Citrus Sinensis ID: 045316

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MAEEDQEDQEQPLPAAVAVEAAQEKPNQLVSEADDDTEITKGSSLSLKLKIPITKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSSSDEDEDEDEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPEYYQFHGCEAAGPSAAAATIS
Secondary Structure (PSIPRED)
cccccHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcHHHccccccHHHHHHHHHHcccccEcccHHHcccccccccccEEEEcccccHHHHccccccccHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHccccHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHccccccccccccccEcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEccccccccccccHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
maeedqedqeqplPAAVAVEAAQekpnqlvseadddteitkgsslslklkipitkppaaaaaeaddRQFMEEDLLLQREQEQDqqdrggvlglprtcsecgkqftsgkalgghkRACLQKikngtthnnqnprLIKKAVavkpeeageegninnhiCYVCHQSFRSVKSLYGhmrkhperewrgvqppkhyllnhrrqhpspsssptihyrlsrdnrdhdhydddgydvdgsmgsggEDLVESLRGWSakrkrgqrlimssssdededeDEEEAMQQAVSDLLLLAQLsaddcndnkeqrgtfdhhrvvssvdsgygvlkikdnnkidddndedderekkkgnvemkdgnglgfdncnseDMWTKKQQKKNKRRRLNELDDAVLegttagggalkeepvvmstAQTYSCLICNKSFDkhqalgghvashnknknvkesssasaaaedskgeDKLAAAASDEETGESSRELAAAAaggggssehkcnicnkifptgqalgghkrchwtgpaealssssqvttsagevtqrapspsrrvhdfdlndtppeyyqfhgceaagpsaaaatis
Flexible Loop (DISEMBL)
maeedqedqeqpLPAAVAVEAAQEkpnqlvseadddteitkgsslslklkipiTKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFtsgkalgghKRACLQKIkngtthnnqnprlIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNhrrqhpspsssptIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRgwsakrkrgqrlimssssdededEDEEEAMQQAVSDLLLLAQLSADDCNDNKEqrgtfdhhrvvssvdsgygvlkikdnnkidddndedderekkkgnvemkdgnglgfdncnsedMWTKkqqkknkrrrlnelddavlegttagggalkeepvVMSTAQTYSCLICNKSFDKHQALGGHVashnknknvkesssasaaaedskgeDKLAAAAsdeetgesSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGevtqrapspsrrvhDFDLNDTPPEYYQFHGCEAAGPSAAAATIS
Low Complexity Region (SEG)
MAeedqedqeqPLPAAVAVEAAQEKPNQLVSEADDDTEitkgsslslklkipitkppaaaaaEADDRQFMeedlllqreqeqdqqdrGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHpspssspTIHYRLSRDNRdhdhydddgydvdgsmgsggEDLVESLRGWSAKRKRGQRLIMssssdedededeeeAMqqavsdllllaqlsaddCNDNKEQRGTFDHHRVVSSVDSGYGVLkikdnnkidddndedderekkkGNVEMKDGNGLGFDNCNSEDMWTkkqqkknkrrrLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKEsssasaaaEDSKGEDKLAAAASDEETgessrelaaaaaggggsseHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPEYYQFHGCEaagpsaaaaTIS
Disordered region (IsUnstruct)
***********************************************************************************************TCSECGKQFT**KALGGHKRACLQKI****************************GNINNHICYVCHQSFRSVKSLYGHM***********************************************************************************************************LLLLA********************RVVSSVDSGYGVL******************************************************************************PVVMSTAQTYSCLICNKSFDKHQA**************************************************************KCNICNKIFPTGQALGGHKRCHWT*****************************************YYQFHG**************
Disordered Region (DISOPRED)
***********************************************************************************************TCSECGKQFTSGKALGGH*******************************************CYVCHQSFRSVKSLYGHMRKHP**************************************************************************************************************************************************************************************************************************************CLICNKSFDKHQALGGHVASHNKNK**************************************************KCNICNKIFPTGQALGGHKRCHWT*******************************DFDLNDTPPEYYQFH*C*AA***AAAA***
Disordered Region (DISEMBL)
************LPAAVAVEAAQEKPNQLVSEADDDTEITKGSSLSLKLKIPITK**********DRQFMEEDLLLQR*********GGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNH************IHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWS****************************QAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKID***********KKGNVEMKDGNGLGFDNCNSEDMW***********RLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNK***************************************************HKCNICNKIFPTGQALGGHKRCHWTG***************************RVHDFDLNDTPPEYYQFHGCEA***********
Disordered Region (DISPRO)
**********QPLPAAVAVEAA******************K**SLSLKLKIPITKPPAAAA***********************QDRGGVLGLPRTCSECGKQFTSGKALGG****************************************NNHICYVCHQSFRSVKSLYGHMRKHP***W**********************************************************************************************QAVSDLLLLAQLSADDCND**********************V***K***************************************************RRLNELDDAVLEGTTAG************TAQTYSCLICNKSFDKHQAL**********************************************************SEHKCNICNKIFPTGQAL************************************RRVHDFDLNDTPPE********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEDQEDQEQPLPAAVAVEAAQEKPNQLVSEADDDTEITKGSSLSLKLKIPITKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSSSDEDEDEDEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPEYYQFHGCEAAGPSAAAATIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
Q96289	227	Zinc finger protein ZAT10	no	no	0.220	0.550	0.38	3e-15
Q9SSW2	273	Zinc finger protein AZF2	no	no	0.146	0.304	0.44	5e-14
O22533	238	Zinc finger protein ZAT6	no	no	0.227	0.542	0.36	5e-13
Q42430	261	Zinc finger protein 1 OS=	N/A	no	0.184	0.402	0.387	6e-12
Q9SIJ0	270	Zinc finger protein ZAT2	no	no	0.153	0.322	0.38	2e-11
O65499	284	Zinc finger protein ZAT3	no	no	0.156	0.313	0.380	3e-11
Q9SSW1	245	Zinc finger protein AZF1	no	no	0.153	0.355	0.384	2e-10
Q9SLD4	178	Zinc finger protein ZAT11	no	no	0.202	0.646	0.349	3e-10
Q9SSW0	193	Zinc finger protein AZF3	no	no	0.260	0.766	0.292	8e-10
Q39092	267	Zinc finger protein ZAT1	no	no	0.172	0.367	0.341	5e-09

>sp|Q96289|ZAT10_ARATH Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 75/150 (50%), Gaps = 25/150 (16%)

Query: 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGE 465
           +Y C +C+K+F  +QALGGH ASH KN     S + S   +D         +A    +G+
Sbjct: 79  SYKCSVCDKTFSSYQALGGHKASHRKNL----SQTLSGGGDDHSTSSATTTSAVTTGSGK 134

Query: 466 SSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGE 525
           S                H C ICNK FP+GQALGGHKRCH+ G      ++S V+ S G 
Sbjct: 135 S----------------HVCTICNKSFPSGQALGGHKRCHYEGNNNI--NTSSVSNSEGA 176

Query: 526 VTQRAPSPSRRVHDFDLNDTP-PEYYQFHG 554
            +    S S R   FDLN  P PE+   +G
Sbjct: 177 GSTSHVSSSHR--GFDLNIPPIPEFSMVNG 204

Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW2|AZF2_ARATH Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 17/100 (17%)

Query: 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGES 466
           Y C +C K+F  +QALGGH ASH     +K  +  S  A+DS        A      GE 
Sbjct: 106 YKCNVCEKAFPSYQALGGHKASHR----IKPPTVISTTADDSTAPTISIVA------GEK 155

Query: 467 SRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW 506
                 AA+G      H+C+IC+K+FPTGQALGGHKRCH+
Sbjct: 156 H---PIAASGKI----HECSICHKVFPTGQALGGHKRCHY 188

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source.

Arabidopsis thaliana (taxid: 3702)

>sp|O22533|ZAT6_ARATH Zinc finger protein ZAT6 OS=Arabidopsis thaliana GN=ZAT6 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 21/150 (14%)

Query: 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGE 465
            Y C +C+K+F  +QALGGH ASH K+ ++ +S+          G D+L+ +++   +G 
Sbjct: 88  IYKCSVCDKAFSSYQALGGHKASHRKSFSLTQSA----------GGDELSTSSAITTSGI 137

Query: 466 SSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGE 525
           S     +  +       H C+IC+K F TGQALGGHKRCH+ G      SSS   +    
Sbjct: 138 SGGGGGSVKS-------HVCSICHKSFATGQALGGHKRCHYEGKNGGGVSSSVSNSEDVG 190

Query: 526 VTQRAPSPSRRVHDFDLNDTP-PEYYQFHG 554
            T    S  R    FDLN  P PE+   +G
Sbjct: 191 STSHVSSGHR---GFDLNIPPIPEFSMVNG 217

Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1

 Score = 73.2 bits (178), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGES 466
           + C +C KSF  +QALGGH  SH   +    S +A+A          +  +A      E 
Sbjct: 90  FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSA------EP 143

Query: 467 SRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSS 517
           +    AA++ G  +  H+C+IC K FPTGQALGGHKR H+ G   A +SS+
Sbjct: 144 ATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASST 194

Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes.

Triticum aestivum (taxid: 4565)

>sp|Q9SIJ0|ZAT2_ARATH Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGES 466
           + C  C K F  HQALGGH A+H   K+VK   +     ED            D++ G+S
Sbjct: 148 FECDGCKKVFGSHQALGGHRATH---KDVKGCFANKNITEDPPPPPPQEIV--DQDKGKS 202

Query: 467 SRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW 506
            + ++           H+CNIC+++F +GQALGGH RCHW
Sbjct: 203 VKLVSGM--------NHRCNICSRVFSSGQALGGHMRCHW 234

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O65499|ZAT3_ARATH Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 16/105 (15%)

Query: 402 STAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDE 461
           S+ + + C  C K F  HQALGGH ASH   KNVK   + +   +D      ++ ++  +
Sbjct: 157 SSIERFECGGCKKVFGSHQALGGHRASH---KNVKGCFAITNVTDDPM---TVSTSSGHD 210

Query: 462 ETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW 506
             G+              S  HKCNIC ++F +GQALGGH RCHW
Sbjct: 211 HQGKILTF----------SGHHKCNICFRVFSSGQALGGHMRCHW 245

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW1|AZF1_ARATH Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGES 466
           Y C +C KSF  +QALGGH  SH K  N   +S          G  +L+  +        
Sbjct: 97  YKCTVCGKSFSSYQALGGHKTSHRKPTNTSITS----------GNQELSNNSHSNS---G 143

Query: 467 SRELAAAAAGGGGSSE----HKCNICNKIFPTGQALGGHKRCHW 506
           S  +      G G S+    H C+IC K F +GQALGGHKRCH+
Sbjct: 144 SVVINVTVNTGNGVSQSGKIHTCSICFKSFASGQALGGHKRCHY 187

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 63/146 (43%), Gaps = 31/146 (21%)

Query: 403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEE 462
           T+  + C  CNK F   QALGGH ASH K K   E       + D KG            
Sbjct: 43  TSNQFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYKG------------ 90

Query: 463 TGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTS 522
                            +  HKC+IC++ F TGQALGGH R H +      S  S +  S
Sbjct: 91  -----------------NHFHKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIPS 133

Query: 523 AGEVTQRAPSPSRRVHDFDLNDTPPE 548
              V +R  S S+R+   DLN TP E
Sbjct: 134 M-PVLKRCGS-SKRILSLDLNLTPLE 157

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW0|AZF3_ARATH Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 54/202 (26%)

Query: 358 NSEDMWTKKQQKKNKRR-------RLNELD--DAVLEGTTAGGGALKEEPVVMSTAQTYS 408
           N  + WTK +++  + R       RL E +     L      GG L  + V ++   +Y 
Sbjct: 19  NGVEQWTKCKKRSKRSRSDLHHNHRLTEEEYLAFCLMLLARDGGDL--DSVTVAEKPSYK 76

Query: 409 CLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSR 468
           C +C K+F  +QALGGH ASH          S     E+ K     A  +          
Sbjct: 77  CGVCYKTFSSYQALGGHKASHR---------SLYGGGENDKSTPSTAVKS---------- 117

Query: 469 ELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQ 528
                         H C++C K F TGQALGGHKRCH+ G          V+ S G V  
Sbjct: 118 --------------HVCSVCGKSFATGQALGGHKRCHYDG---------GVSNSEG-VGS 153

Query: 529 RAPSPSRRVHDFDLNDTPPEYY 550
            +   S     FDLN  P + +
Sbjct: 154 TSHVSSSSHRGFDLNIIPVQGF 175

Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 54/126 (42%), Gaps = 28/126 (22%)

Query: 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGES 466
           + C  C K F  +QALGGH ASH K            A  D  G D+L            
Sbjct: 160 FECETCEKVFKSYQALGGHRASHKKK----------IAETDQLGSDELKKKKKK------ 203

Query: 467 SRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEV 526
                        SS H+C IC K+F +GQALGGHKR H +   E  +  S +  S  ++
Sbjct: 204 -----------STSSHHECPICAKVFTSGQALGGHKRSHASANNE-FTRRSGIIISLIDL 251

Query: 527 TQRAPS 532
              APS
Sbjct: 252 NLPAPS 257

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
1786140	444	tapetum-specific zinc finger protein 1 [	0.623	0.797	0.321	6e-33
48209897	470	Putative zinc finger protein, identical	0.698	0.844	0.295	7e-28
224054214	518	predicted protein [Populus trichocarpa]	0.695	0.762	0.280	4e-23
296090038	461	unnamed protein product [Vitis vinifera]	0.267	0.329	0.414	9e-21
147788254	595	hypothetical protein VITISV_005345 [Viti	0.295	0.282	0.414	1e-20
297793113	467	hypothetical protein ARALYDRAFT_495709 [	0.228	0.278	0.417	2e-20
147785749	441	hypothetical protein VITISV_035545 [Viti	0.566	0.730	0.261	9e-20
15241151	493	C2H2 type zinc finger transcription fact	0.218	0.251	0.435	6e-18
414586799	472	TPA: hypothetical protein ZEAMMB73_52890	0.614	0.739	0.258	3e-17
414586796	484	TPA: hypothetical protein ZEAMMB73_14578	0.632	0.741	0.26	3e-17

>gi|1786140|dbj|BAA19113.1| tapetum-specific zinc finger protein 1 [Petunia x hybrida]

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 212/479 (44%), Gaps = 125/479 (26%)

Query: 95  RTCSECGKQFTSGKALGGHKRACLQKIKN----GTTHNNQNP---RLIKKAVAVKPEEAG 147
           R C  C K F+SGKALGGH R  +Q  K     G      NP   R  KK + ++ ++  
Sbjct: 48  RICEVCNKGFSSGKALGGHMRIHVQAAKKLLSVGKKCKKLNPFGSRYYKKRILLQQDDHQ 107

Query: 148 EEGN--INNH---ICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSP 202
           +  N  I N    IC VC ++F S+KSL+GHMR HPER WRG+QPP              
Sbjct: 108 DNYNNDIKNQLAPICSVCGKNFPSMKSLFGHMRSHPERAWRGIQPP-------------- 153

Query: 203 SSSPTIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSS 262
             +P  +  LS  +           ++  +  SG  DL  S+ GWS K KRG++  ++ +
Sbjct: 154 --APNKNSCLSSASN----------EIAATTKSG--DL--SVPGWSVKAKRGRKGTIAEA 197

Query: 263 -----------SDEDEDEDEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSS 311
                      S + E +DEE  +  AV  L+LLA       N NK            +S
Sbjct: 198 SSNSSLGSRSFSFDQEKDDEEHELHDAVGHLMLLA-------NGNK------------TS 238

Query: 312 VDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKN 371
            D     L+I ++N +             K   E  D N              KK++KK 
Sbjct: 239 ADQE---LEITNSNSL-----------TSKAETEQVDEN--------------KKKKKKI 270

Query: 372 KRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNK 431
           K RRL  + D V     +      ++ +VM T + Y C  C KSF  HQALGGH +SHNK
Sbjct: 271 KLRRLGSVQDLV-----SPVSVHHDQKLVMDTPEKYKCNTCEKSFATHQALGGHRSSHNK 325

Query: 432 NKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKI 491
            + V ++S      ED    D +   A+    G       AAA+      +H     NK 
Sbjct: 326 FRMVIQNS-----VED----DVVTNVATSSIIGPVEEREEAAASTSKLLVDH-----NKN 371

Query: 492 FPTGQALGGHKRCHWTGPA--EALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPE 548
               Q LG   RC W  P   +A  S+SQ+ TS GEV+    S  R++ DFDLN+ PP+
Sbjct: 372 ASASQVLGVQNRCQWGSPIDHQAGPSTSQL-TSPGEVSH---SIGRQILDFDLNELPPQ 426

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48209897|gb|AAT40491.1| Putative zinc finger protein, identical [Solanum demissum]

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 150/507 (29%), Positives = 215/507 (42%), Gaps = 110/507 (21%)

Query: 66  DRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGT 125
           D    EE  LL  +Q++D             C ECGK+F+SGKALGGH           +
Sbjct: 40  DEDVREEKNLLLIKQKKDH-----------ICCECGKEFSSGKALGGHM---------SS 79

Query: 126 THNNQNPRL----IKKAVAVK-----------PEEAGEEGNINNHI--CYVCHQSFRSVK 168
            H   N RL     KK  ++K                EE  I + +  C +CH++F S K
Sbjct: 80  AHVQANQRLEESWKKKKYSIKRSRFDDYDDDEEVVLEEEEEIGDVVVSCEICHKNFPSKK 139

Query: 169 SLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDNRDHDHYDDDGYD 228
           SL+GHMR HP+REWRG++PP            S   S    ++ + ++ +    D     
Sbjct: 140 SLFGHMRCHPDREWRGMKPP------------SKKISKNKGFQATFEDVNEGFEDRFASL 187

Query: 229 VDGSMGSGGE---DLVE--SLRGWSAKRKRGQRLIMSSSSDEDEDEDEE--EAMQQAVSD 281
            D     GG    ++VE   L+ W AK +RG+  +  S S    D+D+E  +A+QQ +S 
Sbjct: 188 RDEEEEEGGGIHFNVVELPPLKDWGAKDRRGRSPLKRSVSSTIMDDDKELHDAVQQLIS- 246

Query: 282 LLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKK 341
            L+   ++ ++ N+N            V S         +KD             + KKK
Sbjct: 247 -LVNGDVNNNNNNNNNRSEVMMSSSNSVGSAPKEAVFCDLKD-------------KSKKK 292

Query: 342 GNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVM 401
           G V+               D   K  ++  KR+R  EL    LE     G  L   PV+ 
Sbjct: 293 GVVD---------------DTKEKNHEETKKRKREKEL--VKLES----GQDLVHIPVLK 331

Query: 402 STAQT-YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASD 460
            + +  Y C  C + F  HQALGGH +SHNK K   E++       + +  +       D
Sbjct: 332 KSVEVKYKCNECGRMFATHQALGGHRSSHNKFKISIENTIDGMKGRNQEENNSQDHGHQD 391

Query: 461 EETG-ESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQV 519
            + G +              ++ HKC  C+KIFPTGQALGGH+R H T   E   SSSQ 
Sbjct: 392 VQLGNQEINNYGKIIINDNNNNVHKCKFCDKIFPTGQALGGHQRSHLTNNQE--ESSSQN 449

Query: 520 TTSAGEVTQRAPSPSRRVHDFDLNDTP 546
            +              +V DFDLN+ P
Sbjct: 450 AS--------------KVLDFDLNELP 462

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054214|ref|XP_002298148.1| predicted protein [Populus trichocarpa] gi|222845406|gb|EEE82953.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 196/496 (39%), Gaps = 101/496 (20%)

Query: 95  RTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNIN- 153
           R C  CGK+F+SGKA GGHKR  L+  K+           I++    K E    + N + 
Sbjct: 68  RVCEYCGKEFSSGKAWGGHKRHHLKNDKDLKKAKKLELTKIQREKTKKHELKLSKSNASR 127

Query: 154 -NHI--------------CYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQ 198
            N I              C +C + F S+ SL+GHMR HP+R W+G QPP     +    
Sbjct: 128 CNTIKAGDVSVASGGKPTCCLCAKVFPSMNSLFGHMRFHPDRGWKGTQPPSFSDKHSSSS 187

Query: 199 HPSPSSSPTIHYRLSRDNRDHDHYDDDGYDVDG---SMGSG---GEDLVESLRGWSAKRK 252
             S S++                    G +VD    +M  G   G DL+ SL  W+ + K
Sbjct: 188 SLSESAA--------------------GLEVDQIGLAMEKGLDDGVDLLASLSSWNKRDK 227

Query: 253 RGQRLIMSSSSDEDEDEDEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSV 312
           RG+ L          D  E       V     L +LS D         G  +  ++    
Sbjct: 228 RGRTL----------DPVEAVCDLDPVVAACNLIELSRDG-------TGQLEKKKIEE-- 268

Query: 313 DSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNK 372
                 ++     KI+D++      + K     M D   + FD+      W  +++ K K
Sbjct: 269 ------VRQSKKLKINDESATYKSFQPKNSGKPMDDQKAVAFDSEGGVSCWFNEEKGKTK 322

Query: 373 RRRLNELDDAVLEGTTAGGGALKEEPVVM-----------STAQTYSCLICNKSFDKHQA 421
           R   +E DD      T            M           + +    C   +K+F    A
Sbjct: 323 RES-DEQDDESHSMITKKKKKKMMMMNWMCKLNDSETSKGTGSYKIGCRSYDKAFPTFHA 381

Query: 422 LGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS 481
            GGHV     N +  E    ++   D KG        S  E  + S E+    +   G S
Sbjct: 382 PGGHVPPGLANADRAELLDYNSNM-DVKGH-----VLSSTEV-KQSEEIEEEGSVPMGIS 434

Query: 482 EHKCNICNKIFPTGQALGGHKRCHWTGPAEA--------LSSSSQVTT---SAGEVTQRA 530
             +C+IC+K FPTGQALGGHKRCHW GP +A        L  +SQ T+   S+GE  Q A
Sbjct: 435 SFQCDICHKTFPTGQALGGHKRCHWKGPVKATPSHEVALLGEASQNTSNTESSGEANQ-A 493

Query: 531 PSPSRRVH---DFDLN 543
             P+R       FDLN
Sbjct: 494 GEPTRASACRLSFDLN 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090038|emb|CBI39857.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 93/181 (51%), Gaps = 29/181 (16%)

Query: 392 GALKEEP----VVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAED 447
           G +K  P     V +T   Y C  CNKSF  HQALGGH +SHNK KN       S   +D
Sbjct: 301 GNMKNSPEEAKQVPTTPDRYRCSTCNKSFPTHQALGGHRSSHNKFKN-------SQTMDD 353

Query: 448 SKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWT 507
           S   + L    +D     +S            S+ H+C  CNK FPTGQALGGH RCHW 
Sbjct: 354 SASHEALGC--NDAAAALASML----------STTHQCKCCNKTFPTGQALGGHMRCHWN 401

Query: 508 GPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPEYYQFHGCEAAGPSAAAATI 567
           GP+EA   SSQV TS GE +Q  P   + +  FDLN+ P    +  G E+   +A  A+ 
Sbjct: 402 GPSEA--PSSQV-TSPGEASQTGP---KLLLGFDLNELPAMDEEDEGTESVTLAAGDASS 455

Query: 568 S 568
           S
Sbjct: 456 S 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788254|emb|CAN74052.1| hypothetical protein VITISV_005345 [Vitis vinifera]

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 100/205 (48%), Gaps = 37/205 (18%)

Query: 384 LEGTTAGGGALKEEPV-------VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVK 436
           LE T  GG A    PV       V +T   Y C  CNKSF  HQALGGH +SHNK KN  
Sbjct: 403 LEAT--GGAAGDIVPVNQIHQKQVPTTPDRYRCSTCNKSFPTHQALGGHRSSHNKFKN-- 458

Query: 437 ESSSASAAAEDSKGEDKLAAAASDEETGESSR-ELAAAAAGGGG------------SSEH 483
                S   +DS   D  A  A  E  G +    L   A    G            S+ H
Sbjct: 459 -----SQTMDDSACAD--APPADYEXYGFTPNVNLTTQAHEAXGCNDAAAALASMLSTTH 511

Query: 484 KCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLN 543
           +C  CNK FPTGQALGGH RCHW GP+EA   SSQV TS GE +Q  P   + +  FDLN
Sbjct: 512 QCKCCNKTFPTGQALGGHMRCHWNGPSEA--PSSQV-TSPGEASQTGP---KLLLGFDLN 565

Query: 544 DTPPEYYQFHGCEAAGPSAAAATIS 568
           + P    +  G E+   +A  A+ S
Sbjct: 566 ELPAMDEEDEGTESVTLAAGDASSS 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793113|ref|XP_002864441.1| hypothetical protein ARALYDRAFT_495709 [Arabidopsis lyrata subsp. lyrata] gi|297310276|gb|EFH40700.1| hypothetical protein ARALYDRAFT_495709 [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 85/158 (53%), Gaps = 28/158 (17%)

Query: 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK-GEDKLAAAASDEETG 464
           ++ C+ CNKSF  +QALGGH ASHNK K + E+  A A AE S  G + +        TG
Sbjct: 318 SHVCVTCNKSFSSYQALGGHRASHNKVK-ILENHQARANAEASLLGTEAIT-------TG 369

Query: 465 ESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEAL----------- 513
            +S + +  +     + +H CNIC+K F TGQALGGHKRCHWTGP               
Sbjct: 370 LASAQGSNTSLSSSHNGDHVCNICHKSFSTGQALGGHKRCHWTGPVSTEAATAAPTSAPT 429

Query: 514 ----SSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPP 547
               +SSSQVT    E  Q      R+  +FDLN+ PP
Sbjct: 430 APAGASSSQVT----ETVQEVKKLKRKFLEFDLNELPP 463

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785749|emb|CAN66381.1| hypothetical protein VITISV_035545 [Vitis vinifera]

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 163/405 (40%), Gaps = 83/405 (20%)

Query: 157 CYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDN 216
           C VC +SF S K+++GHMR HPEREWRG+ PP           PS  ++         D 
Sbjct: 102 CPVCSKSFHSKKAMHGHMRCHPEREWRGINPP-----------PSTKTASCSSASQEIDG 150

Query: 217 RDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSSSDEDEDEDEEEAMQ 276
             H          D S         E    W+   +RGQ  I++S S      +   +  
Sbjct: 151 LSHASMTSTVVSSDISPS-------EPPLQWTKXGRRGQNRIINSYSSSGSSCNISSSQN 203

Query: 277 QAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDE 336
           + + +   +++ +        ++R      +V +  D     LKI +   +     ED  
Sbjct: 204 KGIXEKHQVSERAG------LQKRQQLKMLQVGNLRDYPSKKLKIHERGALGFRGQED-- 255

Query: 337 REKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKE 396
               K     KD   +GF N   +++ T K+   ++     +LDD + + T       K 
Sbjct: 256 -AGNKSGASWKDFLKIGF-NLGPKEVDTDKKSSDDRIIPEGQLDDQIAKNTK------KR 307

Query: 397 EPVVMS--------------TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442
            P  +S                + Y C  CNK+F  +QAL             K +SS+ 
Sbjct: 308 TPKFVSYMDVSXNNRFLKTLLPRKYKCGTCNKTFPTYQAL---------TMGNKYASSSH 358

Query: 443 AAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHK 502
            AA + +G+  L  +   ++  + S               HKC ICNK FPTGQALGGH+
Sbjct: 359 TAASEEEGQ-ALGTSKHAKQVVQKS---------------HKCRICNKSFPTGQALGGHQ 402

Query: 503 RCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPP 547
             H   PA+  ++  + + +AG           RV DFDLN+ PP
Sbjct: 403 XTHRPKPAQLATTKQEASQNAGP----------RVLDFDLNELPP 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241151|ref|NP_200431.1| C2H2 type zinc finger transcription factor-like protein [Arabidopsis thaliana] gi|9758747|dbj|BAB09111.1| unnamed protein product [Arabidopsis thaliana] gi|225879124|dbj|BAH30632.1| hypothetical protein [Arabidopsis thaliana] gi|332009351|gb|AED96734.1| C2H2 type zinc finger transcription factor-like protein [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 82/154 (53%), Gaps = 30/154 (19%)

Query: 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK--GEDKLAAAASDEE 462
           + + C+ CNKSF  +QALGGH ASHNK K + E+  A A AE S    E  +   AS + 
Sbjct: 340 EKHVCVTCNKSFSSYQALGGHRASHNKVK-ILENHQARANAEASLLGTEAIITGLASAQG 398

Query: 463 TGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPAE----------- 511
           T  S   L+++  G     +H CNIC+K F TGQALGGHKRCHWT P             
Sbjct: 399 TNTS---LSSSHNG-----DHVCNICHKSFSTGQALGGHKRCHWTAPVSTVAPTTVPTAA 450

Query: 512 ----ALSSSSQVTTSAGEVTQRAPSPSRRVHDFD 541
               A +SSSQVT    E  Q      RRV +FD
Sbjct: 451 PTVPATASSSQVT----ETVQEVKKLKRRVLEFD 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414586799|tpg|DAA37370.1| TPA: hypothetical protein ZEAMMB73_528900 [Zea mays]

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 177/448 (39%), Gaps = 99/448 (22%)

Query: 157 CYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDN 216
           C  C + F S+K++ GH+R+HP+R++RG               P+P++            
Sbjct: 59  CPECPKWFPSLKAMCGHLRQHPDRDYRGAT------------RPTPATISAAAAVSVAVA 106

Query: 217 RDHDHYDD----DGYDVDGSMGSGGEDLV------ESLRGWSAKRKRGQRLIMSSSSDED 266
            D++  +     +   V  +M +     V      E+   W AK KRG+  +    +   
Sbjct: 107 GDNEPTNKVPRKESVVVAINMVAAAATAVQKQPWEEAETQWPAKAKRGRTHVAPMQASSI 166

Query: 267 EDEDEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVL--KIKDN 324
            +E+E    ++A   LL +++ S++          T    + V  V S Y V   +I+  
Sbjct: 167 SEEEEAAMEEEAAMILLEMSRTSSE----------TQRQQQPVEPVRSPYAVSGHQIQTT 216

Query: 325 NKIDDDNDEDDEREKKKGNVE------------------MKDGNGLGFDNCNSEDMWTKK 366
           + +++   +       + + E                  M   N   F + NS       
Sbjct: 217 SVVEELMQQQTPENALELSAESQTSVAKHVTDLVEAVLIMVPANKAIFPSLNS----GAG 272

Query: 367 QQKKNKRRRLNELDDAVLEGTTAGG---GALKEEPVVMSTAQTYSCLICNKSFDKHQALG 423
            +K  KR   N +  A    TT+     GA++  P      + ++C  C KSF  HQALG
Sbjct: 273 DKKPKKRWVRNPVHTAA--STTSPPPPEGAVRTPPA----GKMHTCPTCPKSFSTHQALG 326

Query: 424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGG----- 478
           GH+ASH KNK         AAA      D L  A SD+  G    ++  A++G G     
Sbjct: 327 GHMASHVKNKTTSARHDDHAAAHAVIKPDVL--AHSDQSAGNGDVDIIPASSGAGKGGAL 384

Query: 479 ------------------GSSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVT 520
                              S+ HKC+ C K F +GQALGGHKR HW       S   Q  
Sbjct: 385 QERQDAQPPPARAPTPPQTSAPHKCDECTKSFSSGQALGGHKRKHW-------SLEKQQA 437

Query: 521 TSAGEVTQRAPSPSRRVHDFDLNDTPPE 548
            +A       P P  R  DFDLN+ P E
Sbjct: 438 RAALFAPVIEPEPELR--DFDLNELPKE 463

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414586796|tpg|DAA37367.1| TPA: hypothetical protein ZEAMMB73_145788 [Zea mays]

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 181/450 (40%), Gaps = 91/450 (20%)

Query: 157 CYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSPTIHYRLSRDN 216
           C  C + F S+K++ GH+R+HP+R++RG   P    +         S++  +   ++ DN
Sbjct: 59  CPECPKWFPSLKAMCGHLRQHPDRDYRGATRPTPATI---------SAAAAVAVAVAGDN 109

Query: 217 RDHDHYD-DDGYDVDGSMGSGGEDLV------ESLRGWSAKRKRGQRLIMSSSSDEDEDE 269
              +     +   V  +M +     V      E+   W AK KRG+  +    +    +E
Sbjct: 110 EPTNKVPRKESVVVAINMVAAAASAVQKQPWEEAETKWPAKAKRGRTSVAPMQASSISEE 169

Query: 270 DEEEAMQQAVSDLLLLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVL--KIKDNNKI 327
           +E    ++A   LL +++ S++          T    + V  V S Y V   +I+  + +
Sbjct: 170 EEAAMEEEAAMILLEMSRTSSE----------TQQRQQPVEPVRSPYAVSGHQIQTTSVV 219

Query: 328 DDDNDEDDEREKKKGNVE------------------MKDGNGLGFDNCNSEDMWTKKQQK 369
           ++   +       + + E                  M   N   F + NS         K
Sbjct: 220 EELMQQQTPENALELSAESQTSVAKHVTDLVEAVLIMVPANKAIFPSLNS-----GAGDK 274

Query: 370 KNKRRRLNELDDAVLEGTTAGG--GALKEEPV--VMSTA--QTYSCLICNKSFDKHQALG 423
           K K+R +          T+     GA++  P   + S A  + ++C  C+KSF  HQALG
Sbjct: 275 KPKKRWVRNPGRTAASTTSPPPPEGAVRTPPARRIPSPASGKMHTCPTCHKSFSTHQALG 334

Query: 424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAA---AGGGG- 479
           GH+ASH KNK         AAA      D L  A SD+  G    ++  A+   AG GG 
Sbjct: 335 GHMASHVKNKTTSARHDDHAAAHAMIKPDVL--AHSDQSAGNGDVDIIPASDDGAGKGGA 392

Query: 480 ---------------------SSEHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQ 518
                                S+ HKC+ C K F +GQALGGHKR HW       S   Q
Sbjct: 393 LQERQDAQPPPPARAPTPPQTSAPHKCDECTKTFSSGQALGGHKRKHW-------SLEKQ 445

Query: 519 VTTSAGEVTQRAPSPSRRVHDFDLNDTPPE 548
              +A         P   + DFDLN+ P E
Sbjct: 446 QARAALPAPAPVIEPEPELRDFDLNELPKE 475

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:2156435	493	AT5G56200 "AT5G56200" [Arabido	0.274	0.316	0.357	1e-39
TAIR|locus:2122118	284	DAZ2 "AT4G35280" [Arabidopsis	0.176	0.352	0.362	7.7e-20
TAIR|locus:2059672	270	DAZ1 "AT2G17180" [Arabidopsis	0.156	0.329	0.352	2.7e-18
TAIR|locus:2199246	227	STZ "AT1G27730" [Arabidopsis t	0.119	0.299	0.493	2.3e-16
TAIR|locus:2205583	324	AT1G02040 "AT1G02040" [Arabido	0.200	0.351	0.382	1.5e-15
TAIR|locus:2179964	238	ZAT6 "AT5G04340" [Arabidopsis	0.170	0.407	0.375	6.4e-14
TAIR|locus:2197128	917	AT1G49900 "AT1G49900" [Arabido	0.204	0.126	0.305	9.7e-05
TAIR|locus:2049811	178	ZAT11 "AT2G37430" [Arabidopsis	0.112	0.359	0.454	2.9e-12
TAIR|locus:2167766	193	ZF3 "AT5G43170" [Arabidopsis t	0.072	0.212	0.522	3.4e-12
TAIR|locus:2091201	273	ZF2 "AT3G19580" [Arabidopsis t	0.123	0.256	0.432	1.7e-11

TAIR|locus:2156435 AT5G56200 "AT5G56200" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
 Identities = 65/182 (35%), Positives = 83/182 (45%)

Query:   377 NELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVK 436
             ++LD  V+     GGGA   E  V        C+ CNKSF  +QALGGH ASHNK K ++
Sbjct:   320 HQLDQVVVVAAEEGGGAGAREKHV--------CVTCNKSFSSYQALGGHRASHNKVKILE 371

Query:   437 EXXXXXXXXEDSKGEDKLAAAASDEETXXXXXXXXXXXXXXXXXXXHKCNICNKIFPTGQ 496
                          G + +        T                   H CNIC+K F TGQ
Sbjct:   372 NHQARANAEASLLGTEAII-------TGLASAQGTNTSLSSSHNGDHVCNICHKSFSTGQ 424

Query:   497 ALGGHKRCHWTGPAEALSSSS--------QVTTSAGEVT---QRAPSPSRRVHDFDLNDT 545
             ALGGHKRCHWT P   ++ ++          T S+ +VT   Q      RRV +FDLN+ 
Sbjct:   425 ALGGHKRCHWTAPVSTVAPTTVPTAAPTVPATASSSQVTETVQEVKKLKRRVLEFDLNEL 484

Query:   546 PP 547
             PP
Sbjct:   485 PP 486

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2122118 DAZ2 "AT4G35280" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
 Identities = 42/116 (36%), Positives = 51/116 (43%)

Query:   402 STAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKEXXXXXXXXEDSKGEDKLAAAASDE 461
             S+ + + C  C K F  HQALGGH ASH   KNVK             G   +     D 
Sbjct:   157 SSIERFECGGCKKVFGSHQALGGHRASH---KNVK-------------GCFAITNVTDDP 200

Query:   462 ETXXXXXXXXXXXXXXXXXXXHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSS 517
              T                   HKCNIC ++F +GQALGGH RCHW    E + S +
Sbjct:   201 MTVSTSSGHDHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKEEEPMISGA 256

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2059672 DAZ1 "AT2G17180" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 36/102 (35%), Positives = 46/102 (45%)

Query:   405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKEXXXXXXXXEDSKGEDKLAAAASDEETX 464
             + + C  C K F  HQALGGH A+H   K+VK         ED            D+   
Sbjct:   146 ERFECDGCKKVFGSHQALGGHRATH---KDVKGCFANKNITEDPPPPPPQEIVDQDK--- 199

Query:   465 XXXXXXXXXXXXXXXXXXHKCNICNKIFPTGQALGGHKRCHW 506
                               H+CNIC+++F +GQALGGH RCHW
Sbjct:   200 -------GKSVKLVSGMNHRCNICSRVFSSGQALGGHMRCHW 234

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2199246 STZ "AT1G27730" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
 Identities = 36/73 (49%), Positives = 43/73 (58%)

Query:   483 HKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDL 542
             H C ICNK FP+GQALGGHKRCH+ G     +SS  V+ S G  +    S S R   FDL
Sbjct:   136 HVCTICNKSFPSGQALGGHKRCHYEGNNNINTSS--VSNSEGAGSTSHVSSSHR--GFDL 191

Query:   543 NDTP-PEYYQFHG 554
             N  P PE+   +G
Sbjct:   192 NIPPIPEFSMVNG 204

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=RCA;IMP

GO:0009644 "response to high light intensity" evidence=IEP

GO:0010117 "photoprotection" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;IEP

TAIR|locus:2205583 AT1G02040 "AT1G02040" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 44/115 (38%), Positives = 54/115 (46%)

Query:   403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKEXXXXXXXXEDSKGEDKLAAAASDEE 462
             TAQ + C  C K F  HQALGGH ASH K K            E+   ED       DE+
Sbjct:   146 TAQVFQCKACKKVFTSHQALGGHRASHKKVKGCFASQDKEEEEEEEYKEDD-DDNDEDED 204

Query:   463 TXXXXXXXXXXXXXXXXXXXHKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSS 517
                                 H+C IC+++F +GQALGGHKRCHW  P+  L  +S
Sbjct:   205 EEEDEEDKSTAHIARKRSNAHECTICHRVFSSGQALGGHKRCHWLTPSNYLRMTS 259

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2179964 ZAT6 "AT5G04340" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
 Identities = 39/104 (37%), Positives = 47/104 (45%)

Query:   456 AAASDE-ETXXXXXXXXXXXXXXXXXXXHKCNICNKIFPTGQALGGHKRCHWTGP-AEAL 513
             +A  DE  T                   H C+IC+K F TGQALGGHKRCH+ G     +
Sbjct:   120 SAGGDELSTSSAITTSGISGGGGGSVKSHVCSICHKSFATGQALGGHKRCHYEGKNGGGV 179

Query:   514 SSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTP-PEYYQFHGCE 556
             SSS   +   G  T    S  R    FDLN  P PE+   +G E
Sbjct:   180 SSSVSNSEDVGS-TSHVSSGHR---GFDLNIPPIPEFSMVNGDE 219

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0055062 "phosphate ion homeostasis" evidence=IGI

GO:2000280 "regulation of root development" evidence=IGI

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2197128 AT1G49900 "AT1G49900" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 47/154 (30%), Positives = 68/154 (44%)

Query:   407 YSCLICNKSFDKHQALGGHVASHNKNKNVKEXXXXXXXXEDSKGEDKLAAAASDEETXXX 466
             + C IC K F  +QALGGH ASH+    +K          ++ G D      + E+T   
Sbjct:   193 FKCSICEKVFTSYQALGGHKASHS----IKAAQL------ENAGAD------AGEKTRSK 236

Query:   467 XXXXXXXXXXXXXXXXHKCNICNKIFPTGQALGGHKRCHWTGPA--------EAL----- 513
                             HKC+IC+ +FPTGQALGGHKR H+ G          EA+     
Sbjct:   237 MLSPSGKI--------HKCDICHVLFPTGQALGGHKRRHYEGLLGGHKRGNDEAVLKLSP 288

Query:   514 SSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPP 547
             +S+  V T   +  Q   + S  +H  + ++  P
Sbjct:   289 NSNKSVVTKVLDAEQSLRA-SDNIHKRNQDEVVP 321

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2049811 ZAT11 "AT2G37430" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 30/66 (45%), Positives = 38/66 (57%)

Query:   483 HKCNICNKIFPTGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDL 542
             HKC+IC++ F TGQALGGH R H +      S  S +  S   V +R  S S+R+   DL
Sbjct:    94 HKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIPSM-PVLKRCGS-SKRILSLDL 151

Query:   543 NDTPPE 548
             N TP E
Sbjct:   152 NLTPLE 157

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2167766 ZF3 "AT5G43170" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 23/44 (52%), Positives = 32/44 (72%)

Query:   483 HKCNICNKIFPTGQALGGHKRCHWTGP---AEALSSSSQVTTSA 523
             H C++C K F TGQALGGHKRCH+ G    +E + S+S V++S+
Sbjct:   118 HVCSVCGKSFATGQALGGHKRCHYDGGVSNSEGVGSTSHVSSSS 161

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2091201 ZF2 "AT3G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 32/74 (43%), Positives = 41/74 (55%)

Query:   483 HKCNICNKIFPTGQALGGHKRCHWTGP-AEALSSSSQVTTSAGEVTQRAPSPSRRVHDF- 540
             H+C+IC+K+FPTGQALGGHKRCH+ G         S+  + +G V+    S  R    F 
Sbjct:   165 HECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGSKSISHSGSVSSTV-SEERSHRGFI 223

Query:   541 DLN-DTPPEYYQFH 553
             DLN    PE    H
Sbjct:   224 DLNLPALPELSLHH 237

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IEP;RCA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011134 hypothetical protein (518 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	2e-06
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	4e-05
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	0.002

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 483 HKCNICNKIFPTGQALGGHKRCHW 506
           H C +C K F + QALGGHK+ H 
Sbjct: 2   HTCGVCGKTFSSLQALGGHKKSHC 25

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 95  RTCSECGKQFTSGKALGGHKR 115
            TC  CGK F+S +ALGGHK+
Sbjct: 2   HTCGVCGKTFSSLQALGGHKK 22

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 155 HICYVCHQSFRSVKSLYGHMRKH 177
           H C VC ++F S+++L GH + H
Sbjct: 2   HTCGVCGKTFSSLQALGGHKKSH 24

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.98
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.97
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.96
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.96
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.94
KOG3608	467	consensus Zn finger proteins [General function pre	99.92
KOG3608	467	consensus Zn finger proteins [General function pre	99.85
KOG3576	267	consensus Ovo and related transcription factors [T	99.67
KOG3576	267	consensus Ovo and related transcription factors [T	99.55
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.54
PHA00733	128	hypothetical protein	99.16
PHA02768	55	hypothetical protein; Provisional	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	99.05
KOG3993	500	consensus Transcription factor (contains Zn finger	99.01
PHA02768	55	hypothetical protein; Provisional	99.0
PLN03086	567	PRLI-interacting factor K; Provisional	98.99
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.94
KOG3993	500	consensus Transcription factor (contains Zn finger	98.9
PHA00733	128	hypothetical protein	98.89
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.82
PHA00616	44	hypothetical protein	98.65
PHA00732	79	hypothetical protein	98.46
PHA00616	44	hypothetical protein	98.41
PHA00732	79	hypothetical protein	98.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.07
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.06
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.81
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.77
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.72
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.72
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.7
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.68
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.64
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.45
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.37
smart00355	26	ZnF_C2H2 zinc finger.	97.18
KOG1146	1406	consensus Homeobox protein [General function predi	97.18
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.17
smart00355	26	ZnF_C2H2 zinc finger.	97.03
PRK04860	160	hypothetical protein; Provisional	96.87
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.83
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.7
PRK04860	160	hypothetical protein; Provisional	96.67
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.59
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.46
COG5048	467	FOG: Zn-finger [General function prediction only]	96.36
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.33
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.18
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.06
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	95.93
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	95.04
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.82
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.62
KOG2893	341	consensus Zn finger protein [General function pred	94.15
KOG2893	341	consensus Zn finger protein [General function pred	94.06
KOG1146	1406	consensus Homeobox protein [General function predi	93.99
COG5048	467	FOG: Zn-finger [General function prediction only]	93.9
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.85
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.68
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	93.57
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.42
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.69
COG4049	65	Uncharacterized protein containing archaeal-type C	91.58
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.49
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.63
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	89.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.93
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	88.93
KOG2186	276	consensus Cell growth-regulating nucleolar protein	88.18
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	87.36
PHA00626	59	hypothetical protein	86.59
COG1592	166	Rubrerythrin [Energy production and conversion]	86.52
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	83.81
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.77
COG4049	65	Uncharacterized protein containing archaeal-type C	82.31
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	82.27
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	81.09
COG1592	166	Rubrerythrin [Energy production and conversion]	80.54
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.47
KOG4167	907	consensus Predicted DNA-binding protein, contains	80.4
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.39
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.32
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	80.05

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.98  E-value=2.2e-32  Score=270.17  Aligned_cols=79  Identities=16%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             cCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhhCCCC-----Ccccc---CCCchhHHHHHhhC
Q 045316          128 NNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPER-----EWRGV---QPPKHYLLNHRRQH  199 (568)
Q Consensus       128 c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~-----~~~C~---~c~~~~l~~H~~~h  199 (568)
                      |-.|-++..-...|+.|.++|+|||| |+|.+||+.|.++++|+.||-+|..+     +|.|+   +|.+.|        
T Consensus       608 CiiC~rVlSC~saLqmHyrtHtGERP-FkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf--------  678 (958)
T KOG1074|consen  608 CIICLRVLSCPSALQMHYRTHTGERP-FKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF--------  678 (958)
T ss_pred             eeeeeecccchhhhhhhhhcccCcCc-cccccccchhccccchhhcccccccCccccccccCCchhhhcccc--------
Confidence            44567777778999999999999999 99999999999999999999999843     58898   898888        


Q ss_pred             CCCCCCCcccccccCCC
Q 045316          200 PSPSSSPTIHYRLSRDN  216 (568)
Q Consensus       200 ~~~~~~l~~h~~~~~~~  216 (568)
                       .+.-.|.+|+++|.+.
T Consensus       679 -tn~V~lpQhIriH~~~  694 (958)
T KOG1074|consen  679 -TNAVTLPQHIRIHLGG  694 (958)
T ss_pred             -cccccccceEEeecCC
Confidence             7778889999998854

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.97  E-value=1.1e-30  Score=253.57  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=99.3

Q ss_pred             cchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccC----------CCCcccC
Q 045316           60 AAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIK----------NGTTHNN  129 (568)
Q Consensus        60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~----------~~~~~c~  129 (568)
                      .+|.+|++.+.....|++|++..+.     ..+..|.|..|.++|.++..|.+||.+|..-.+          .+++.|.
T Consensus       211 ltcpycdrgykrltslkeHikyrhe-----kne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCt  285 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHE-----KNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCT  285 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHh-----hCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccc
Confidence            3789999999999999999887663     366789999999999999999999999965433          3678889


Q ss_pred             CCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316          130 QNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR  175 (568)
Q Consensus       130 ~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~  175 (568)
                      .|++.|+-+.+|+.|+|+|.|++| |.|+.|+|+|+..+.+..||-
T Consensus       286 ECgKAFKfKHHLKEHlRIHSGEKP-feCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  286 ECGKAFKFKHHLKEHLRIHSGEKP-FECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccchhhhhHHHHHhhheeecCCCC-cCCcccccccccCCccccccc
Confidence            999999999999999999999999 999999999999999999984

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.96  E-value=1.5e-30  Score=257.37  Aligned_cols=57  Identities=5%  Similarity=-0.096  Sum_probs=50.5

Q ss_pred             hhccccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhh
Q 045316          284 LLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKK  340 (568)
Q Consensus       284 ~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~  340 (568)
                      ...+..|-+|-+...-+++|+.|.|.|+|++||+|.+||+.|.++-+|..|+-.+..
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka  658 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA  658 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc
Confidence            345778999999999999999999999999999999999999999997776665553

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.96  E-value=8.3e-31  Score=228.71  Aligned_cols=136  Identities=19%  Similarity=0.288  Sum_probs=126.3

Q ss_pred             hhccccccccccccccccccccccccccCC---CccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCc
Q 045316          284 LLAQLSADDCNDNKEQRGTFDHHRVVSSVD---SGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSE  360 (568)
Q Consensus       284 ~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~---~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (568)
                      ....|+|+.||+.+.+.+.|.+|+..|-.-   +.+.|..|++.+.....                              
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpA------------------------------  176 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPA------------------------------  176 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHH------------------------------
Confidence            346899999999999999999999988653   78999999999888777                              


Q ss_pred             chhhHhhhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          361 DMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                                                       |..|+++|+  -+++|.+|||.|.+.+-|+.|+|+|||||||.|+.|
T Consensus       177 ---------------------------------LkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC  221 (279)
T KOG2462|consen  177 ---------------------------------LKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHC  221 (279)
T ss_pred             ---------------------------------HhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcc
Confidence                                             888999998  569999999999999999999999999999999999


Q ss_pred             chhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccccccccc
Q 045316          441 ASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRC  504 (568)
Q Consensus       441 ~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~  504 (568)
                      +++|.+.+.                    |+.||.+|++.|+|+|..|+|+|..++.|.+|...
T Consensus       222 ~kAFADRSN--------------------LRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  222 GKAFADRSN--------------------LRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cchhcchHH--------------------HHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999886                    99999999999999999999999999999999754

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.94  E-value=3.9e-28  Score=212.07  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             cccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHh
Q 045316          287 QLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKK  366 (568)
Q Consensus       287 ~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (568)
                      .+.|++|++.|.+..+|..|+++|+  -+.+|.+||+.|.+.|.                                    
T Consensus       161 a~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWL------------------------------------  202 (279)
T KOG2462|consen  161 AFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWL------------------------------------  202 (279)
T ss_pred             cccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHH------------------------------------
Confidence            4669999999999999999999997  58999999999999999                                    


Q ss_pred             hhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhc
Q 045316          367 QQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAE  446 (568)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~  446 (568)
                                                 |+.|+|.|||||||.|..|+|+|..+++|+.||++|.+.|+|+|..|+|.|..
T Consensus       203 ---------------------------LQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  203 ---------------------------LQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             ---------------------------hhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence                                       99999999999999999999999999999999999999999999666666554


Q ss_pred             cCc
Q 045316          447 DSK  449 (568)
Q Consensus       447 ~~~  449 (568)
                      .++
T Consensus       256 ~Sy  258 (279)
T KOG2462|consen  256 KSY  258 (279)
T ss_pred             HHH
Confidence            443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.92  E-value=3.3e-26  Score=204.43  Aligned_cols=227  Identities=15%  Similarity=0.224  Sum_probs=171.9

Q ss_pred             ccccchhhHhHhhcchHHHHHHHHHhhcc-----ccCCCCC-CCcccc--ccccccCCchhHHHHHHHhccccCCCCccc
Q 045316           57 PAAAAAEADDRQFMEEDLLLQREQEQDQQ-----DRGGVLG-LPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHN  128 (568)
Q Consensus        57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~-----~~~~~~~-~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c  128 (568)
                      .+.|.-+.|+..|.+...|..|+-.|.-.     ...+..+ ..+.|.  .|-+.|.+++.|++|+++|+++|.   ..|
T Consensus       134 ~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKv---vAC  210 (467)
T KOG3608|consen  134 NFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKV---VAC  210 (467)
T ss_pred             hhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeE---Eec
Confidence            55667788999999999999999877521     1112223 347775  599999999999999999999998   555


Q ss_pred             CCCchhhhhhhccchhhhhhc--CCcCCcccccccccccCchhHHHHhhhCCCCCccccCCCchhHHHHHhhCCCCCCCC
Q 045316          129 NQNPRLIKKAVAVKPEEAGEE--GNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSP  206 (568)
Q Consensus       129 ~~c~~~f~~~~~l~~H~~~h~--~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~C~~c~~~~l~~H~~~h~~~~~~l  206 (568)
                      ..|+..|.+...|-.|++..+  ...+ |.|..|.|+|.+...|+.|++.|-                            
T Consensus       211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~-fqC~~C~KrFaTeklL~~Hv~rHv----------------------------  261 (467)
T KOG3608|consen  211 PHCGELFRTKTKLFDHLRRQTELNTNS-FQCAQCFKRFATEKLLKSHVVRHV----------------------------  261 (467)
T ss_pred             chHHHHhccccHHHHHHHhhhhhcCCc-hHHHHHHHHHhHHHHHHHHHHHhh----------------------------
Confidence            566888888888888876543  2334 888888888888888888888773                            


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccCccccCCCCCCCCCChhHHHHHHHHhhhhhhhc
Q 045316          207 TIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSSSDEDEDEDEEEAMQQAVSDLLLLA  286 (568)
Q Consensus       207 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (568)
                                                                                                     .
T Consensus       262 -------------------------------------------------------------------------------n  262 (467)
T KOG3608|consen  262 -------------------------------------------------------------------------------N  262 (467)
T ss_pred             -------------------------------------------------------------------------------h
Confidence                                                                                           2


Q ss_pred             cccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHh
Q 045316          287 QLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKK  366 (568)
Q Consensus       287 ~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (568)
                      -|+|+.|..+....+.|..|++.-                                                        
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~r--------------------------------------------------------  286 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYR--------------------------------------------------------  286 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhh--------------------------------------------------------
Confidence            356888888888888888887642                                                        


Q ss_pred             hhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc--cchhh
Q 045316          367 QQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS--SASAA  444 (568)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f  444 (568)
                                                        |...|||+|+.|++.|.+.+.|.+|..+|+ +-.|+|+.  |.++|
T Consensus       287 ----------------------------------Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~  331 (467)
T KOG3608|consen  287 ----------------------------------HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSV  331 (467)
T ss_pred             ----------------------------------hccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHH
Confidence                                              444678999999999999999999998888 66799976  55555


Q ss_pred             hccCchhhhhhhhhcccccccchHHHHHHHhcCC-C--CCceeCCccccccCcccccccc-cccC
Q 045316          445 AEDSKGEDKLAAAASDEETGESSRELAAAAAGGG-G--SSEHKCNICNKIFPTGQALGGH-KRCH  505 (568)
Q Consensus       445 ~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~-~--~k~f~C~~C~k~F~~~~~L~~H-~r~H  505 (568)
                      ...-                    .|++|++-+. |  +-+|.|..|++.|++..+|.+| ||.|
T Consensus       332 r~~~--------------------q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  332 RTYT--------------------QMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKH  376 (467)
T ss_pred             HHHH--------------------HHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhh
Confidence            3322                    2777776543 4  4579999999999999999999 5666

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.85  E-value=1.2e-22  Score=181.90  Aligned_cols=121  Identities=15%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             cccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhc--cccCCCCcccCCCchhh
Q 045316           58 AAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACL--QKIKNGTTHNNQNPRLI  135 (568)
Q Consensus        58 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--~~~~~~~~~c~~c~~~f  135 (568)
                      ..|.-..|-+.|.+++.|++|++.|.       ++|...|+.||..|+++..|-.|++.-+  ...+|   .|..|.+.|
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs-------~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~f---qC~~C~KrF  247 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHS-------NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSF---QCAQCFKRF  247 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcC-------CCeEEecchHHHHhccccHHHHHHHhhhhhcCCch---HHHHHHHHH
Confidence            34555679999999999999999998       7999999999999999999999998543  44564   455779999


Q ss_pred             hhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh-CC-CCCccccCCCchh
Q 045316          136 KKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK-HP-EREWRGVQPPKHY  191 (568)
Q Consensus       136 ~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~-~~~~~C~~c~~~~  191 (568)
                      .+...|+.|+..|..-   |+|+.|+.+....+.|.+||+. |. .|||+|..|++.+
T Consensus       248 aTeklL~~Hv~rHvn~---ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c  302 (467)
T KOG3608|consen  248 ATEKLLKSHVVRHVNC---YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRC  302 (467)
T ss_pred             hHHHHHHHHHHHhhhc---ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhh
Confidence            9999999999999987   9999999999999999999986 77 8999999998665

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.67  E-value=7.2e-18  Score=139.53  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCC-----
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGG-----  478 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~-----  478 (568)
                      |.|-|..|||.|..--.|++|+|+|+|.+||+|..|+++|.+.-.                    |..|++ +|.     
T Consensus       144 kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs--------------------leshl~kvhgv~~~y  203 (267)
T KOG3576|consen  144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS--------------------LESHLKKVHGVQHQY  203 (267)
T ss_pred             HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc--------------------HHHHHHHHcCchHHH
Confidence            468899999999999999999999999999999888888875433                    666653 343     


Q ss_pred             -----CCCceeCCccccccCcccccccccccCcCC
Q 045316          479 -----GSSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       479 -----~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                           ..|.|.|+.||.+-.....+..|++.|+..
T Consensus       204 aykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  204 AYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             HHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence                 357899999999999999999999998543

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.55  E-value=1.5e-15  Score=125.89  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             ccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccC
Q 045316           59 AAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIK  122 (568)
Q Consensus        59 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~  122 (568)
                      ...|..|+|.|.-...|.+|++-|.       ..+.|-|..|||.|..--.|++|+|+|+|.+|
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~-------~vkr~lct~cgkgfndtfdlkrh~rthtgvrp  173 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHS-------DVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP  173 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhcc-------HHHHHHHhhccCcccchhhhhhhhccccCccc
Confidence            3467788888888888888887776       56778888888888888888888888877777

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.54  E-value=4.4e-15  Score=145.83  Aligned_cols=92  Identities=22%  Similarity=0.275  Sum_probs=80.6

Q ss_pred             ccccccCCCCCCccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCC
Q 045316           45 LSLKLKIPITKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNG  124 (568)
Q Consensus        45 ~~~~~~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  124 (568)
                      .......+.......|.|+.|+|.|...+.|.+|.-.|.       |.+||+|.+|.|.|+.+..|..|+|.|.|+||  
T Consensus       880 s~k~~tk~~kte~gmyaCDqCDK~FqKqSSLaRHKYEHs-------GqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP--  950 (1007)
T KOG3623|consen  880 SGKAETKHAKTEDGMYACDQCDKAFQKQSSLARHKYEHS-------GQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP--  950 (1007)
T ss_pred             ccccccccccCccccchHHHHHHHHHhhHHHHHhhhhhc-------CCCCcccchhhHhhhhhhhhhhhhhhccCCCc--
Confidence            333334455666778889999999999999999999888       89999999999999999999999999999988  


Q ss_pred             CcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316          125 TTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR  175 (568)
Q Consensus       125 ~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~  175 (568)
                                                    |.|+.|+|+|+..+.+..||.
T Consensus       951 ------------------------------fQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  951 ------------------------------FQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             ------------------------------chhhhhhhhcccccchHhhhc
Confidence                                          999999999999999999993

>PHA00733 hypothetical protein

Probab=99.16  E-value=7.2e-12  Score=101.64  Aligned_cols=84  Identities=10%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             cCCCCcccccccccccCChhhhhhh--hh---cCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGH--VA---SHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA  475 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H--~~---~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~  475 (568)
                      ....+++.|.+|++.|.....|..|  ++   .+.+++||.|+.||+.|.....                    |..|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~--------------------L~~H~r   94 (128)
T PHA00733         35 TPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVS--------------------LKQHIR   94 (128)
T ss_pred             ChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHH--------------------HHHHHh
Confidence            3345789999999999998888877  22   3456899999999999877665                    899999


Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +|  +.+|.|.+|++.|.....|.+|++..+
T Consensus        95 ~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         95 YT--EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             cC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            87  458999999999999999999987653

>PHA02768 hypothetical protein; Provisional

Probab=99.06  E-value=5e-11  Score=78.17  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=37.9

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCc
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK  449 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~  449 (568)
                      -|.|+.|||.|...++|.+||++|+  ++|+|..|++.|...+.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~   46 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGE   46 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccce
Confidence            3999999999999999999999999  79999999998875543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.05  E-value=9e-11  Score=117.36  Aligned_cols=94  Identities=14%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCc--hhhhhhhhhcccccccchHHHH
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK--GEDKLAAAASDEETGESSRELA  471 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~--~f~~~~~l~~h~~~~~~~~~L~  471 (568)
                      |..|+.++.  ++|.|+ ||+.| .+..|..|+++|.+++|+.|+.|++.|.....  .+..            .+..|.
T Consensus       468 LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d------------~~s~Lt  531 (567)
T PLN03086        468 MEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD------------RLRGMS  531 (567)
T ss_pred             HHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh------------hhhhHH
Confidence            667777764  789999 99866 67999999999999999999999998842211  0100            112388


Q ss_pred             HHHhcCCCCCceeCCccccccCccccccccc-ccC
Q 045316          472 AAAAGGGGSSEHKCNICNKIFPTGQALGGHK-RCH  505 (568)
Q Consensus       472 ~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~-r~H  505 (568)
                      .|..+. |.+++.|..||+.|..+ .|..|+ ..|
T Consensus       532 ~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        532 EHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             HHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            898886 99999999999988765 577774 444

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=99.01  E-value=3.6e-11  Score=111.57  Aligned_cols=52  Identities=23%  Similarity=0.383  Sum_probs=44.2

Q ss_pred             CCccccccccccCCchhHHHHHH--HhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKR--ACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL  170 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L  170 (568)
                      ..|.|.+|...|.+.-.|.+|.=  +-+-|                                  |+|+.|+|+|+...+|
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vE----------------------------------YrCPEC~KVFsCPANL  311 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVE----------------------------------YRCPECDKVFSCPANL  311 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEee----------------------------------ecCCcccccccCchhh
Confidence            45999999999999999998863  11111                                  9999999999999999


Q ss_pred             HHHhhhCC
Q 045316          171 YGHMRKHP  178 (568)
Q Consensus       171 ~~H~~~H~  178 (568)
                      ..|.|||.
T Consensus       312 ASHRRWHK  319 (500)
T KOG3993|consen  312 ASHRRWHK  319 (500)
T ss_pred             hhhhcccC
Confidence            99999997

>PHA02768 hypothetical protein; Provisional

Probab=99.00  E-value=1.6e-10  Score=75.83  Aligned_cols=45  Identities=18%  Similarity=0.236  Sum_probs=38.0

Q ss_pred             CCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY  171 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~  171 (568)
                      -.|.|+.||+.|....+|.+||++|+  ++                                |+|..|++.|.+.+.|.
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~--------------------------------~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRKHN--TN--------------------------------LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHhcC--Cc--------------------------------ccCCcccceecccceeE
Confidence            35899999999999999999999987  44                                88888899888877764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.99  E-value=2.5e-10  Score=114.19  Aligned_cols=123  Identities=10%  Similarity=0.083  Sum_probs=94.5

Q ss_pred             cchhhHhHhhcchHHHHHHHHHhhccc------------cCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcc
Q 045316           60 AAAEADDRQFMEEDLLLQREQEQDQQD------------RGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTH  127 (568)
Q Consensus        60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~------------~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  127 (568)
                      ..|..|.+..... .|..|........            .....++.+.|++|++.|. ...|..|+++|+  +++.|. 
T Consensus       408 V~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-  482 (567)
T PLN03086        408 VECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-  482 (567)
T ss_pred             EECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-
Confidence            3678888766554 5557776543110            0112356789999999996 688999999986  676665 


Q ss_pred             cCCCchhhhhhhccchhhhhhcCCcCCccccccccccc----------CchhHHHHhhhCCCCCccccCCCchhH
Q 045316          128 NNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFR----------SVKSLYGHMRKHPEREWRGVQPPKHYL  192 (568)
Q Consensus       128 c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~----------~~~~L~~H~~~H~~~~~~C~~c~~~~l  192 (568)
                         |++.+ .+..|..|+.+|.+.++ +.|++|++.|.          ....|..|+.++..+++.|..|++.+.
T Consensus       483 ---Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        483 ---CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVM  552 (567)
T ss_pred             ---CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeee
Confidence               77655 56899999999999999 99999999995          245899999998899999999997763

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.94  E-value=2.6e-10  Score=64.00  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=23.8

Q ss_pred             HHHHHhcCCCCCceeCCccccccCc
Q 045316          470 LAAAAAGGGGSSEHKCNICNKIFPT  494 (568)
Q Consensus       470 L~~H~~~H~~~k~f~C~~C~k~F~~  494 (568)
                      |.+||++|+|+|||+|++|+++|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            8999999999999999999999974

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.90  E-value=1.6e-09  Score=100.82  Aligned_cols=113  Identities=17%  Similarity=0.265  Sum_probs=74.6

Q ss_pred             cccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhh
Q 045316           58 AAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKK  137 (568)
Q Consensus        58 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~  137 (568)
                      ..|.|..|...|..-..|.+|.-...       ..--|+|+.|+|+|+-..+|..|.|.|.-...-...--+.-.+....
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RI-------V~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~  338 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRI-------VHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET  338 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCee-------EEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence            35688999999999999999964322       23569999999999999999999999964332110000000000011


Q ss_pred             hhccchhhhh--hcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316          138 AVAVKPEEAG--EEGNINNHICYVCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       138 ~~~l~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  178 (568)
                      ....+.-.+.  ...+.. |.|.+|+|.|.+...|+.|+.+|.
T Consensus       339 rae~~ea~rsg~dss~gi-~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  339 RAEVQEAERSGDDSSSGI-FSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhhhhhccccCCcccCce-eecHHhhhhhHHHHHHHHhHHhhh
Confidence            1111110000  112223 999999999999999999999986

>PHA00733 hypothetical protein

Probab=98.89  E-value=1.7e-09  Score=87.80  Aligned_cols=80  Identities=23%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             cchhhHhHhhcchHHHHHH--HHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhh
Q 045316           60 AAAEADDRQFMEEDLLLQR--EQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKK  137 (568)
Q Consensus        60 ~~C~~C~k~f~~~~~L~~H--~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~  137 (568)
                      ..|.+|.+.|.....|..|  ++.+..  .  .+.++|.|+.||+.|.+...|..|++.|.  .+               
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~--~--~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~---------------   99 (128)
T PHA00733         41 LIRAVVKTLIYNPQLLDESSYLYKLLT--S--KAVSPYVCPLCLMPFSSSVSLKQHIRYTE--HS---------------   99 (128)
T ss_pred             HHHHHHhhhccChhhhcchHHHHhhcc--c--CCCCCccCCCCCCcCCCHHHHHHHHhcCC--cC---------------
Confidence            4678888888887777776  322210  0  14678999999999999999999988662  23               


Q ss_pred             hhccchhhhhhcCCcCCcccccccccccCchhHHHHhhhC
Q 045316          138 AVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKH  177 (568)
Q Consensus       138 ~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H  177 (568)
                                       |.|++|++.|.....|..|+...
T Consensus       100 -----------------~~C~~CgK~F~~~~sL~~H~~~~  122 (128)
T PHA00733        100 -----------------KVCPVCGKEFRNTDSTLDHVCKK  122 (128)
T ss_pred             -----------------ccCCCCCCccCCHHHHHHHHHHh
Confidence                             99999999999999999998654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.82  E-value=6.4e-10  Score=62.39  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.3

Q ss_pred             hhhhhhhcCCCCCCccccccchhhh
Q 045316          421 ALGGHVASHNKNKNVKESSSASAAA  445 (568)
Q Consensus       421 ~L~~H~~~H~~~k~~~C~~C~~~f~  445 (568)
                      +|.+||++|+|++||.|++|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            5889999999999999999998885

...

>PHA00616 hypothetical protein

Probab=98.65  E-value=6.3e-09  Score=64.79  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=32.6

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      ||+|..||+.|..++.|.+|++.|+|+++|.|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            59999999999999999999999999999998653

>PHA00732 hypothetical protein

Probab=98.46  E-value=9.5e-08  Score=69.80  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             cccccccccccCChhhhhhhhhc-CCCCCCccccccchhhh
Q 045316          406 TYSCLICNKSFDKHQALGGHVAS-HNKNKNVKESSSASAAA  445 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~~~f~  445 (568)
                      ||.|+.||+.|.+...|+.|++. |+   ++.|+.||+.|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            58999999999999999999985 65   468999999887

>PHA00616 hypothetical protein

Probab=98.41  E-value=9.3e-08  Score=59.64  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=27.5

Q ss_pred             CccccccccccCCchhHHHHHHHhccccCCC
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACLQKIKNG  124 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  124 (568)
                      ||+|..||+.|..++.|.+|++.|+|++++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            6899999999999999999999999998843

>PHA00732 hypothetical protein

Probab=98.41  E-value=1.4e-07  Score=68.91  Aligned_cols=47  Identities=30%  Similarity=0.433  Sum_probs=37.9

Q ss_pred             CccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG  172 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~  172 (568)
                      ||.|..||+.|.+...|+.|++. |.+                                   +.|+.||+.|.   .|..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~-----------------------------------~~C~~CgKsF~---~l~~   42 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL-----------------------------------TKCPVCNKSYR---RLNQ   42 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC-----------------------------------CccCCCCCEeC---Chhh
Confidence            58899999999999999999984 432                                   77888999887   5788


Q ss_pred             HhhhCC
Q 045316          173 HMRKHP  178 (568)
Q Consensus       173 H~~~H~  178 (568)
                      |++++.
T Consensus        43 H~~~~~   48 (79)
T PHA00732         43 HFYSQY   48 (79)
T ss_pred             hhcccC
Confidence            886665

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.07  E-value=1.8e-06  Score=47.08  Aligned_cols=23  Identities=39%  Similarity=0.691  Sum_probs=20.7

Q ss_pred             ccccccccccCCchhHHHHHHHh
Q 045316           95 RTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      |.|++|++.|.++..|.+||+.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=1.4e-06  Score=47.59  Aligned_cols=23  Identities=43%  Similarity=0.781  Sum_probs=21.6

Q ss_pred             cccccccccccCchhHHHHhhhC
Q 045316          155 HICYVCHQSFRSVKSLYGHMRKH  177 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~H  177 (568)
                      |+|++|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.98  E-value=7.2e-06  Score=55.65  Aligned_cols=50  Identities=28%  Similarity=0.465  Sum_probs=36.2

Q ss_pred             CccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG  172 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~  172 (568)
                      .|.|++|++ ..+...|..|+.. |..+..                              . +.|++|...+.  .+|..
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~------------------------------~-v~CPiC~~~~~--~~l~~   47 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESK------------------------------N-VVCPICSSRVT--DNLIR   47 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCC------------------------------C-ccCCCchhhhh--hHHHH
Confidence            488999999 5557889999885 433211                              1 88999998765  38888


Q ss_pred             HhhhC
Q 045316          173 HMRKH  177 (568)
Q Consensus       173 H~~~H  177 (568)
                      |+..+
T Consensus        48 Hl~~~   52 (54)
T PF05605_consen   48 HLNSQ   52 (54)
T ss_pred             HHHHh
Confidence            88764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.81  E-value=9.1e-06  Score=64.11  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=21.5

Q ss_pred             cccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316           96 TCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR  175 (568)
Q Consensus        96 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~  175 (568)
                      +|.+|+..|.+...|..||...++-..       .....+.....+..+++.-... . +.|.+|++.|.+...|..||+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~-------~~~~~l~~~~~~~~~~~~~~~~-~-~~C~~C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI-------PDQKYLVDPNRLLNYLRKKVKE-S-FRCPYCNKTFRSREALQEHMR   71 (100)
T ss_dssp             -------------------------------------------------------S-S-EEBSSSS-EESSHHHHHHHHH
T ss_pred             Ccccccccccccccccccccccccccc-------ccccccccccccccccccccCC-C-CCCCccCCCCcCHHHHHHHHc
Confidence            488899999998899999875444221       0111122223333333322222 3 999999999999999999998


Q ss_pred             hC
Q 045316          176 KH  177 (568)
Q Consensus       176 ~H  177 (568)
                      .+
T Consensus        72 ~~   73 (100)
T PF12756_consen   72 SK   73 (100)
T ss_dssp             HT
T ss_pred             Cc
Confidence            75

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.77  E-value=6e-06  Score=47.05  Aligned_cols=26  Identities=38%  Similarity=0.717  Sum_probs=24.3

Q ss_pred             ceeCCccccccCcccccccccccCcC
Q 045316          482 EHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      ||+|.+|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            69999999999999999999999954

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.75  E-value=1.5e-05  Score=71.86  Aligned_cols=69  Identities=20%  Similarity=0.501  Sum_probs=49.4

Q ss_pred             CCCcccccc--cccccCChhhhhhhhhc-CCCCCCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcC
Q 045316          403 TAQTYSCLI--CNKSFDKHQALGGHVAS-HNKNKNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGG  477 (568)
Q Consensus       403 ~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H  477 (568)
                      ++|||+|++  |+|.+.....|+.|+.- |-..+...-+  +=-..|                                -
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F--------------------------------~  393 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF--------------------------------S  393 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc--------------------------------c
Confidence            359999998  99999999999999853 5332221110  000111                                2


Q ss_pred             CCCCceeCCccccccCcccccccccc
Q 045316          478 GGSSEHKCNICNKIFPTGQALGGHKR  503 (568)
Q Consensus       478 ~~~k~f~C~~C~k~F~~~~~L~~H~r  503 (568)
                      ...|||.|++|+|+|+....|+.|+.
T Consensus       394 ~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         394 AKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ccCCceeccccchhhccCccceeccc
Confidence            34579999999999999999999964

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.72  E-value=1.9e-05  Score=43.55  Aligned_cols=24  Identities=38%  Similarity=0.614  Sum_probs=19.6

Q ss_pred             ccccccccccCCchhHHHHHHHhc
Q 045316           95 RTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      |.|++|++.|.+...|+.|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999874

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.72  E-value=3.4e-05  Score=52.34  Aligned_cols=51  Identities=14%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             cchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhc
Q 045316           60 AAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      +.|+.|++ ..+...|..|....+.     ...+.+.|++|...+.  .+|.+||+.++
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~-----~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHR-----SESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCc-----CCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            57899999 4556889999887663     2456799999999766  49999999765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.70  E-value=1.5e-05  Score=45.40  Aligned_cols=26  Identities=35%  Similarity=0.609  Sum_probs=24.0

Q ss_pred             cccccccccccCChhhhhhhhhcCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      +|.|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999998864

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.68  E-value=1.1e-05  Score=44.60  Aligned_cols=24  Identities=38%  Similarity=0.848  Sum_probs=20.1

Q ss_pred             ccccccccccCChhhhhhhhhcCC
Q 045316          407 YSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |.|++|++.|.+...|+.|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998763

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.64  E-value=1.7e-05  Score=71.57  Aligned_cols=71  Identities=17%  Similarity=0.358  Sum_probs=48.9

Q ss_pred             CCCCccccc--cccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCc
Q 045316           91 LGLPRTCSE--CGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSV  167 (568)
Q Consensus        91 ~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~  167 (568)
                      ++|||+|++  |.|.|++...|+.|+.- |...+..+-. -..--..|            -...+| |+|++|+|+++..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p-~p~~~~~F------------~~~~KP-YrCevC~KRYKNl  411 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP-SPEKMNIF------------SAKDKP-YRCEVCDKRYKNL  411 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC-Cccccccc------------cccCCc-eeccccchhhccC
Confidence            469999997  99999999999999983 4332211000 00001111            233456 9999999999999


Q ss_pred             hhHHHHhh
Q 045316          168 KSLYGHMR  175 (568)
Q Consensus       168 ~~L~~H~~  175 (568)
                      ..|+.|..
T Consensus       412 NGLKYHr~  419 (423)
T COG5189         412 NGLKYHRK  419 (423)
T ss_pred             ccceeccc
Confidence            99999974

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.45  E-value=3e-05  Score=61.15  Aligned_cols=73  Identities=23%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             cccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          408 SCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       408 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|.+|+..|.+...|..||...++...-..    ..+....       .             +..+.+.- -...|.|.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----~~l~~~~-------~-------------~~~~~~~~-~~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ----KYLVDPN-------R-------------LLNYLRKK-VKESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Cccccccccccccccccccccccccccccc----ccccccc-------c-------------cccccccc-cCCCCCCCc
Confidence            599999999999999999976544321100    0001110       0             22222211 122799999


Q ss_pred             cccccCcccccccccccC
Q 045316          488 CNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       488 C~k~F~~~~~L~~H~r~H  505 (568)
                      |++.|.+...|..||+.+
T Consensus        56 C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SS-EESSHHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHHcCc
Confidence            999999999999999976

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=6.7e-05  Score=47.79  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccC
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIK  122 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~  122 (568)
                      .+.|-.|++|+..+....+|++|+.++++.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            68899999999999999999999998888766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.18  E-value=0.00017  Score=40.44  Aligned_cols=24  Identities=38%  Similarity=0.768  Sum_probs=22.3

Q ss_pred             ccccccccccCChhhhhhhhhcCC
Q 045316          407 YSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999875

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=97.18  E-value=0.00061  Score=74.04  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=71.4

Q ss_pred             ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhh
Q 045316           57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLI  135 (568)
Q Consensus        57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f  135 (568)
                      .....|..|+..|.....+.-|+..-+      .-.+.|+|+.|+..|+....|..|||+ |..-..   .+|.    .+
T Consensus       434 ~~l~e~~~~e~~~~s~r~~~~~t~~L~------S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~----~g  500 (1406)
T KOG1146|consen  434 GTLVELTKAEPLLESKRSLEGQTVVLH------SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCK----AG  500 (1406)
T ss_pred             Cccccccchhhhhhhhcccccceeeee------cccccccCCccchhhhhHHHhhhcccccccccch---hHhH----hc
Confidence            444467778888888888888877655      245899999999999999999999996 433221   2221    00


Q ss_pred             hhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh
Q 045316          136 KKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       136 ~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      ...-.+.+=...-.+.++ |.|..|..+|.++.+|-+||..
T Consensus       501 q~~~~~arg~~~~~~~~p-~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  501 QNHPRLARGEVYRCPGKP-YPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccccccccccccCCCCc-ccceeeeeeeecchHHHHHHHH
Confidence            000000000011123345 9999999999999999999965

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.17  E-value=0.00016  Score=46.10  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKN  434 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  434 (568)
                      +..+.|-.|++|+..+++..+|++|+.++++.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3456789999999999999999999988887775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.03  E-value=0.00045  Score=38.68  Aligned_cols=24  Identities=46%  Similarity=0.754  Sum_probs=20.9

Q ss_pred             ccccccccccCCchhHHHHHHHhc
Q 045316           95 RTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      |.|..|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999998774

>PRK04860 hypothetical protein; Provisional

Probab=96.87  E-value=0.00037  Score=58.94  Aligned_cols=38  Identities=11%  Similarity=0.211  Sum_probs=34.3

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhcc
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAED  447 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~  447 (568)
                      +|.|. |++   ....+++|.++|+|+++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            69998 998   888999999999999999999999887643

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.83  E-value=0.00034  Score=38.86  Aligned_cols=23  Identities=43%  Similarity=0.829  Sum_probs=21.2

Q ss_pred             ccccccccccCChhhhhhhhhcC
Q 045316          407 YSCLICNKSFDKHQALGGHVASH  429 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H  429 (568)
                      |.|.+|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999864

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.70  E-value=0.00062  Score=37.77  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             ccccccccccCCchhHHHHHHHh
Q 045316           95 RTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999854

>PRK04860 hypothetical protein; Provisional

Probab=96.67  E-value=0.00082  Score=56.83  Aligned_cols=28  Identities=11%  Similarity=0.188  Sum_probs=25.4

Q ss_pred             HHHHHhcCCCCCceeCCccccccCcccc
Q 045316          470 LAAAAAGGGGSSEHKCNICNKIFPTGQA  497 (568)
Q Consensus       470 L~~H~~~H~~~k~f~C~~C~k~F~~~~~  497 (568)
                      +++|.++|+|+++|.|..|++.|.....
T Consensus       131 ~rrH~ri~~g~~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        131 VRRHNRVVRGEAVYRCRRCGETLVFKGE  158 (160)
T ss_pred             HHHHHHHhcCCccEECCCCCceeEEecc
Confidence            8999999999999999999999986543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.59  E-value=0.0014  Score=35.89  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             ccccccccccCCchhHHHHHHHhcc
Q 045316           95 RTCSECGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~H~~  119 (568)
                      |+|+.|+.... +..|.+|++.|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999888 8899999998753

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.46  E-value=0.0014  Score=37.07  Aligned_cols=22  Identities=32%  Similarity=0.677  Sum_probs=20.8

Q ss_pred             ccccccccccCChhhhhhhhhc
Q 045316          407 YSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      |.|.+|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999975

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.36  E-value=0.034  Score=57.20  Aligned_cols=73  Identities=16%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             CcccccccccccCChhhhhhhhh--cCCCC--CCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVA--SHNKN--KNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGG  478 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~--k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~  478 (568)
                      .++.|..|...|.....|.+|.+  .|+++  +|+.|+  .|++.|..-..                    +..|..+|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~--------------------~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDA--------------------LKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCcccccccc--------------------ccCCccccc
Confidence            46899999999999999999999  79999  888887  67777776665                    777777777


Q ss_pred             CCCceeCCc--cccccCcccc
Q 045316          479 GSSEHKCNI--CNKIFPTGQA  497 (568)
Q Consensus       479 ~~k~f~C~~--C~k~F~~~~~  497 (568)
                      +.+++.|..  |.+.+.....
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~  368 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLN  368 (467)
T ss_pred             CCCccccccccCccccccccC
Confidence            777777765  4444444433

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.33  E-value=0.0012  Score=37.29  Aligned_cols=23  Identities=26%  Similarity=0.658  Sum_probs=21.3

Q ss_pred             eeCCccccccCcccccccccccC
Q 045316          483 HKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       483 f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      |-|.+|++.|.+...|..|++.+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0098  Score=61.39  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             cccccccccccCchhHHHHhh-hCCCCCccccCC
Q 045316          155 HICYVCHQSFRSVKSLYGHMR-KHPEREWRGVQP  187 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~C~~c  187 (568)
                      ..|..| -.|.+...|+.||+ .|.  .+.|.+|
T Consensus       116 ~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC  146 (669)
T KOG2231|consen  116 KECLHC-TEFKSVENLKNHMRDQHK--LHLCSLC  146 (669)
T ss_pred             CCCccc-cchhHHHHHHHHHHHhhh--hhccccc
Confidence            568888 77888999999984 463  5666666

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.06  E-value=0.0013  Score=36.01  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=18.8

Q ss_pred             ccccccccccCChhhhhhhhhcCC
Q 045316          407 YSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |+|+.|+.... +..|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999998 999999998764

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.0072  Score=62.35  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             chhhHhHhh---------------cchHHHHHHHHHhhccccCCCCCCCccccccc---ccc------CCchhHHHHHHH
Q 045316           61 AAEADDRQF---------------MEEDLLLQREQEQDQQDRGGVLGLPRTCSECG---KQF------TSGKALGGHKRA  116 (568)
Q Consensus        61 ~C~~C~k~f---------------~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~---k~F------~~~~~L~~H~~~  116 (568)
                      .|..|++.|               .+...|+.|++..|         +.+.|.+|-   +.|      -++..|.+|++.
T Consensus       101 ~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~  171 (669)
T KOG2231|consen  101 SCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------KLHLCSLCLQNLKIFINERKLYTRAELNLHLMF  171 (669)
T ss_pred             hcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------hhhccccccccceeeeeeeehehHHHHHHHHhc
Confidence            667777666               37888999997666         566666652   222      345778888874


Q ss_pred             h-ccccCCC-CcccCCCchhhhhhhccchhhhhhcCCcCCccccccc------ccccCchhHHHHhhhCCCCCcccc--C
Q 045316          117 C-LQKIKNG-TTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCH------QSFRSVKSLYGHMRKHPEREWRGV--Q  186 (568)
Q Consensus       117 H-~~~~~~~-~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~------k~F~~~~~L~~H~~~H~~~~~~C~--~  186 (568)
                      = .+++.+. -..|..|...|.....|.+|++.++     |.|.+|.      .-|.....|..|.+.++   |.|+  +
T Consensus       172 gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H---flCE~~~  243 (669)
T KOG2231|consen  172 GDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH---FLCEEEF  243 (669)
T ss_pred             CCCccccccCCccchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC---ccccccc
Confidence            2 2343332 3677888999999999999998866     7787774      46777778999988765   6665  5


Q ss_pred             C
Q 045316          187 P  187 (568)
Q Consensus       187 c  187 (568)
                      |
T Consensus       244 C  244 (669)
T KOG2231|consen  244 C  244 (669)
T ss_pred             c
Confidence            5

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=95.04  E-value=0.02  Score=54.25  Aligned_cols=82  Identities=20%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             CccccccccccCCchhHHHHHHH--hccc-cCCCCcccCCCchhhhhhhccchh---hhhhcCCcCCcccccccccccCc
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA--CLQK-IKNGTTHNNQNPRLIKKAVAVKPE---EAGEEGNINNHICYVCHQSFRSV  167 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~--H~~~-~~~~~~~c~~c~~~f~~~~~l~~H---~~~h~~~~~~~~C~~C~k~F~~~  167 (568)
                      .|.|.-|...|.+...-+.|+++  |.-. |.---...++-...|..+.....-   ...-.+..+ +.|.+|.+.|...
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~-~~c~~c~k~~~s~   81 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESV-VYCEACNKSFASP   81 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccc-eehHHhhccccCh
Confidence            58999999999999999999985  4311 100001112333344332111110   011233344 9999999999999


Q ss_pred             hhHHHHhhh
Q 045316          168 KSLYGHMRK  176 (568)
Q Consensus       168 ~~L~~H~~~  176 (568)
                      .....|+..
T Consensus        82 ~a~~~hl~S   90 (390)
T KOG2785|consen   82 KAHENHLKS   90 (390)
T ss_pred             hhHHHHHHH
Confidence            999999854

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.82  E-value=0.013  Score=32.21  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=18.4

Q ss_pred             ccccccccccCChhhhhhhhhc
Q 045316          407 YSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      ..|+.||+.| ....|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            6799999999 88899999764

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.62  E-value=0.024  Score=31.18  Aligned_cols=21  Identities=29%  Similarity=0.746  Sum_probs=16.8

Q ss_pred             ccccccccccCCchhHHHHHHH
Q 045316           95 RTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      ..|+.||+.| ....|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4688899988 77888888763

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=94.15  E-value=0.012  Score=51.30  Aligned_cols=24  Identities=29%  Similarity=0.617  Sum_probs=21.3

Q ss_pred             ccccccccccCChhhhhhh-hhcCC
Q 045316          407 YSCLICNKSFDKHQALGGH-VASHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H-~~~H~  430 (568)
                      |+|.+|.|...+--.|..| |.+|.
T Consensus        35 fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   35 FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             ceeeeehhhhccCCCceeehhhhhh
Confidence            9999999998888899999 78885

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=94.06  E-value=0.017  Score=50.44  Aligned_cols=47  Identities=32%  Similarity=0.523  Sum_probs=37.2

Q ss_pred             cccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHH-h
Q 045316           96 TCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGH-M  174 (568)
Q Consensus        96 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H-~  174 (568)
                      -|-+|++.|....-|..|++.-+                                    |+|.+|.|...+--.|..| |
T Consensus        12 wcwycnrefddekiliqhqkakh------------------------------------fkchichkkl~sgpglsihcm   55 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH------------------------------------FKCHICHKKLFSGPGLSIHCM   55 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc------------------------------------ceeeeehhhhccCCCceeehh
Confidence            47788888888888888877321                                    9999999988888888888 6


Q ss_pred             hhCC
Q 045316          175 RKHP  178 (568)
Q Consensus       175 ~~H~  178 (568)
                      .+|.
T Consensus        56 qvhk   59 (341)
T KOG2893|consen   56 QVHK   59 (341)
T ss_pred             hhhh
Confidence            7776

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.99  E-value=0.017  Score=63.30  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             CCCccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCch
Q 045316           54 TKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPR  133 (568)
Q Consensus        54 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~  133 (568)
                      ......+.|..|++.|...-.+. |+-          ...+|.|..|...|.....|..|.+              .|.+
T Consensus      1255 ~~~sGe~~c~~~~~~~~~~~~~~-~l~----------~~~~~~~~~~~~~~~~~~~l~~~~~--------------k~~~ 1309 (1406)
T KOG1146|consen 1255 LPASGEGECGAVDELLTPSFGIS-TLD----------VTHRYLCRQCKMAFDGEAPLTAHQR--------------KFCF 1309 (1406)
T ss_pred             CcCCCcchhhhccccccCcccee-ecc----------cchhHHHHHHHhhhcchhHHHHHHH--------------HHHh
Confidence            33456678999999998887777 654          5678999999999999999999994              4556


Q ss_pred             hhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh
Q 045316          134 LIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       134 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      .+.....+..|+..+..... | |..|...|.....|..||++
T Consensus      1310 ~~~~~~~~~~~~l~~~d~~~-~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1310 AGRGSGGSMPPPLRVPDCTY-H-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             ccCccccCCCCcccCccccc-c-chHHHhhcchhHHHHHHHHH
Confidence            67777777777777777776 7 99999999999999999986

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.90  E-value=0.094  Score=53.92  Aligned_cols=156  Identities=13%  Similarity=0.018  Sum_probs=96.4

Q ss_pred             ccccccccccccccccccccccc--cccCC--Cccccc--cccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCC
Q 045316          286 AQLSADDCNDNKEQRGTFDHHRV--VSSVD--SGYGVL--KIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNS  359 (568)
Q Consensus       286 ~~~~C~~C~~~F~~~~~L~~H~~--~h~~~--~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (568)
                      ..+.|..|...|.....|..|.+  .|.++  +++.|.  .|++.|.+...+..+.........................
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            46889999999999999999999  89999  999999  8999999998877776665544322222111111110000


Q ss_pred             cch--hhHhhhhhHhhhccccccchhhcccccCCCCCcccccccCCCC--cccccccccccCChhhhhhhhhcCCCCCCc
Q 045316          360 EDM--WTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQ--TYSCLICNKSFDKHQALGGHVASHNKNKNV  435 (568)
Q Consensus       360 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~  435 (568)
                      ...  .....................+.........+..+...|...+  .+.|..|.+.|.....|..|++.|....++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            000  0000000000011111112223333344444555665665544  577888999999999999999999988887


Q ss_pred             cccccc
Q 045316          436 KESSSA  441 (568)
Q Consensus       436 ~C~~C~  441 (568)
                      .|..++
T Consensus       448 ~~~~~~  453 (467)
T COG5048         448 LCSILK  453 (467)
T ss_pred             eecccc
Confidence            774443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.85  E-value=0.031  Score=33.83  Aligned_cols=23  Identities=22%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             cccccccccccCChhhhhhhhhc
Q 045316          406 TYSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      +|.|++|++.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.68  E-value=0.29  Score=45.55  Aligned_cols=118  Identities=21%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             hHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccc---cccCC------chhHHHHHHHhccccCC-CCcccCCCch
Q 045316           64 ADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECG---KQFTS------GKALGGHKRACLQKIKN-GTTHNNQNPR  133 (568)
Q Consensus        64 ~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~---k~F~~------~~~L~~H~~~H~~~~~~-~~~~c~~c~~  133 (568)
                      .|.........|..|.+..|         ..+.|.+|-   +.|..      +..|..|...=..+..| +-..|..|..
T Consensus       158 kc~~~C~~~k~lk~H~K~~H---------~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         158 KCHRRCGSLKELKKHYKAQH---------GFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             hhhhhhhhHHHHHHHHHhhc---------CcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            47777777888888888766         567777773   44543      34555555432222222 2244555667


Q ss_pred             hhhhhhccchhhhhhcCCcCCcccccccc-------cccCchhHHHHhhhCCCCCccccC-----------CCchhHHHH
Q 045316          134 LIKKAVAVKPEEAGEEGNINNHICYVCHQ-------SFRSVKSLYGHMRKHPEREWRGVQ-----------PPKHYLLNH  195 (568)
Q Consensus       134 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~k-------~F~~~~~L~~H~~~H~~~~~~C~~-----------c~~~~l~~H  195 (568)
                      .|.....|..|++..+     -+|-+|++       -|+.-..|..|.+.-+   |.|.|           .....|..|
T Consensus       229 ~FYdDDEL~~HcR~~H-----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~~el~~h  300 (493)
T COG5236         229 YFYDDDELRRHCRLRH-----EACHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYHTELLEH  300 (493)
T ss_pred             eecChHHHHHHHHhhh-----hhhhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccHHHHHHH
Confidence            7888888888877644     34666665       3666777777775422   55533           234557777


Q ss_pred             Hhh
Q 045316          196 RRQ  198 (568)
Q Consensus       196 ~~~  198 (568)
                      +-.
T Consensus       301 ~~~  303 (493)
T COG5236         301 LTR  303 (493)
T ss_pred             HHH
Confidence            543

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=93.57  E-value=0.049  Score=50.49  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=45.8

Q ss_pred             CCCCccccccccccC-CchhHHHHHH-Hhccc--cCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccC
Q 045316           91 LGLPRTCSECGKQFT-SGKALGGHKR-ACLQK--IKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRS  166 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~-~~~~L~~H~~-~H~~~--~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~  166 (568)
                      .....+|-+|...+. .++.+..|+- .|.-.  .|-        ..+|  ...|..|++.-...   ++|-+|.+.|..
T Consensus       141 t~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpD--------niVy--vnelLehLkekL~r---~~CLyCekifrd  207 (423)
T KOG2482|consen  141 TIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPD--------NIVY--VNELLEHLKEKLER---LRCLYCEKIFRD  207 (423)
T ss_pred             CeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCc--------ceee--HHHHHHHHHHHHhh---heeeeeccccCC
Confidence            345678999988775 5567777776 34321  110        1111  12233333332222   999999999999


Q ss_pred             chhHHHHhhh
Q 045316          167 VKSLYGHMRK  176 (568)
Q Consensus       167 ~~~L~~H~~~  176 (568)
                      +..|+.||+.
T Consensus       208 kntLkeHMrk  217 (423)
T KOG2482|consen  208 KNTLKEHMRK  217 (423)
T ss_pred             cHHHHHHHHh
Confidence            9999999975

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.42  E-value=0.045  Score=33.07  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCccccccccccCCchhHHHHHHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      .+|.|++|++.|.+...|..|++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHCh
Confidence            368899999999999999999984

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.69  E-value=0.063  Score=31.90  Aligned_cols=24  Identities=17%  Similarity=0.423  Sum_probs=19.5

Q ss_pred             ccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316          407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS  442 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~  442 (568)
                      |.|.+||..+....            .++.|++||.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            88999998876543            7899999975

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=91.58  E-value=0.083  Score=34.49  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=25.0

Q ss_pred             CCCCCccccccccccCCchhHHHHHHHh
Q 045316           90 VLGLPRTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      .|+-.+.|+.||+.|....++.+|+..-
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            4788899999999999999999999853

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.49  E-value=0.078  Score=31.51  Aligned_cols=11  Identities=18%  Similarity=0.628  Sum_probs=9.2

Q ss_pred             CceeCCccccc
Q 045316          481 SEHKCNICNKI  491 (568)
Q Consensus       481 k~f~C~~C~k~  491 (568)
                      .++.|++||..
T Consensus        16 ~~~~CP~Cg~~   26 (33)
T cd00350          16 APWVCPVCGAP   26 (33)
T ss_pred             CCCcCcCCCCc
Confidence            58999999863

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.63  E-value=0.23  Score=46.19  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhccccCCCCcccCCC---chhhh------hhhccchhhhhhcCCcC---Ccccc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQKIKNGTTHNNQN---PRLIK------KAVAVKPEEAGEEGNIN---NHICY  158 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c---~~~f~------~~~~l~~H~~~h~~~~~---~~~C~  158 (568)
                      -.|.|+.  |..+......|+.|.+.-++.     .+|..|   .+.|.      +...|..|...-..+..   --.|.
T Consensus       150 L~F~CP~skc~~~C~~~k~lk~H~K~~H~~-----~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~  224 (493)
T COG5236         150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGF-----VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI  224 (493)
T ss_pred             HHhcCCchhhhhhhhhHHHHHHHHHhhcCc-----EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence            3588986  888888889999999975543     444444   34444      44677777665433322   12599


Q ss_pred             cccccccCchhHHHHhhhCCCCCcccc
Q 045316          159 VCHQSFRSVKSLYGHMRKHPEREWRGV  185 (568)
Q Consensus       159 ~C~k~F~~~~~L~~H~~~H~~~~~~C~  185 (568)
                      +|...|-.-..|.+|+|.-+++-|-|.
T Consensus       225 FC~~~FYdDDEL~~HcR~~HE~ChICD  251 (493)
T COG5236         225 FCKIYFYDDDELRRHCRLRHEACHICD  251 (493)
T ss_pred             hccceecChHHHHHHHHhhhhhhhhhh
Confidence            999999999999999998666655554

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=89.70  E-value=0.13  Score=30.70  Aligned_cols=10  Identities=40%  Similarity=1.009  Sum_probs=8.1

Q ss_pred             CceeCCcccc
Q 045316          481 SEHKCNICNK  490 (568)
Q Consensus       481 k~f~C~~C~k  490 (568)
                      .|..|++||.
T Consensus        17 ~p~~CP~Cg~   26 (34)
T cd00729          17 APEKCPICGA   26 (34)
T ss_pred             CCCcCcCCCC
Confidence            4788999986

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.93  E-value=0.14  Score=46.25  Aligned_cols=44  Identities=18%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             CcccccccccccCChhhhhhhhhc---CC-------CCCC-----ccccccchhhhccC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVAS---HN-------KNKN-----VKESSSASAAAEDS  448 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~---H~-------~~k~-----~~C~~C~~~f~~~~  448 (568)
                      +.+.|++|++.|..+.-+....|+   .+       +..|     ..||.||++|....
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~   62 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEED   62 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccc
Confidence            568999999999999888877754   22       3334     38999999987664

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.93  E-value=0.27  Score=42.20  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=64.6

Q ss_pred             ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhh
Q 045316           57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLI  135 (568)
Q Consensus        57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f  135 (568)
                      .+.|+-..|-+.|.....+..|...-|          .-.|.+|.+.|.+...|..|+.- |..              .|
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h----------~~sCs~C~r~~Pt~hLLd~HI~E~HDs--------------~F  134 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLH----------GNSCSFCKRAFPTGHLLDAHILEWHDS--------------LF  134 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcc----------cchhHHHHHhCCchhhhhHHHHHHHHH--------------HH
Confidence            445555569999999998988876444          34799999999999999999984 421              11


Q ss_pred             hhhhccchhhhhhcCCcCCcccc--cccccccCchhHHHHh-hhCC
Q 045316          136 KKAVAVKPEEAGEEGNINNHICY--VCHQSFRSVKSLYGHM-RKHP  178 (568)
Q Consensus       136 ~~~~~l~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~-~~H~  178 (568)
                      .-        .+-.|... |.|-  -|+..|.+....+.|| ++|.
T Consensus       135 qa--------~veRG~dM-y~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  135 QA--------LVERGQDM-YQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HH--------HHHcCccH-HHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            11        12233333 9995  4999999999999998 4564

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.18  E-value=0.25  Score=44.10  Aligned_cols=50  Identities=12%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             ccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCcccccccccccCcC
Q 045316          435 VKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       435 ~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      |.|.+||-+.+.-.                     |.+||..-.+ .-|.|-.|++.|.. ...+.|...=+.
T Consensus         4 FtCnvCgEsvKKp~---------------------vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ---------------------VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             Eehhhhhhhccccc---------------------hHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcch
Confidence            78888888766443                     8889877777 77999999999999 888999876543

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=87.36  E-value=0.58  Score=43.70  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             CccccchhhHhHhhc-chHHHHHHHHHhhccccCCCC---------------CCCccccccccccCCchhHHHHHHH--h
Q 045316           56 PPAAAAAEADDRQFM-EEDLLLQREQEQDQQDRGGVL---------------GLPRTCSECGKQFTSGKALGGHKRA--C  117 (568)
Q Consensus        56 ~~~~~~C~~C~k~f~-~~~~L~~H~~~h~~~~~~~~~---------------~~~~~C~~C~k~F~~~~~L~~H~~~--H  117 (568)
                      ..+.-+|-.|...+. +++....|+-..|....|-+.               -..+.|-+|.|.|+.+..|+.|||.  |
T Consensus       141 t~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~H  220 (423)
T KOG2482|consen  141 TIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRH  220 (423)
T ss_pred             CeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccC
Confidence            355667888877664 466777776654433333221               2358999999999999999999994  6


Q ss_pred             ccccC----CCCccc-C--CCchhhhh-hhccchhhh----hh---------cCCcC-CcccccccccccCchhHHHHhh
Q 045316          118 LQKIK----NGTTHN-N--QNPRLIKK-AVAVKPEEA----GE---------EGNIN-NHICYVCHQSFRSVKSLYGHMR  175 (568)
Q Consensus       118 ~~~~~----~~~~~c-~--~c~~~f~~-~~~l~~H~~----~h---------~~~~~-~~~C~~C~k~F~~~~~L~~H~~  175 (568)
                      ..-.|    |.+.+- +  .-++.+.- .....+-..    .+         .+..+ .-+|-+|....-+...|..||+
T Consensus       221 rrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk  300 (423)
T KOG2482|consen  221 RRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMK  300 (423)
T ss_pred             cccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHH
Confidence            55444    222111 0  11111111 011100000    00         01111 1589999999999999999997


Q ss_pred             h-CC
Q 045316          176 K-HP  178 (568)
Q Consensus       176 ~-H~  178 (568)
                      + |.
T Consensus       301 ~vHe  304 (423)
T KOG2482|consen  301 IVHE  304 (423)
T ss_pred             HHHH
Confidence            5 54

>PHA00626 hypothetical protein

Probab=86.59  E-value=0.43  Score=31.47  Aligned_cols=16  Identities=13%  Similarity=0.171  Sum_probs=13.4

Q ss_pred             CceeCCccccccCccc
Q 045316          481 SEHKCNICNKIFPTGQ  496 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~  496 (568)
                      ..|+|+.||..|+.-.
T Consensus        22 nrYkCkdCGY~ft~~~   37 (59)
T PHA00626         22 DDYVCCDCGYNDSKDA   37 (59)
T ss_pred             cceEcCCCCCeechhh
Confidence            4899999999998643

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=86.52  E-value=0.34  Score=41.12  Aligned_cols=15  Identities=27%  Similarity=0.643  Sum_probs=11.6

Q ss_pred             cCCCCCceeCCcccc
Q 045316          476 GGGGSSEHKCNICNK  490 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k  490 (568)
                      +|-|+-|-+|++||-
T Consensus       143 ~~~ge~P~~CPiCga  157 (166)
T COG1592         143 THEGEAPEVCPICGA  157 (166)
T ss_pred             cccCCCCCcCCCCCC
Confidence            345567999999993

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=83.81  E-value=0.66  Score=25.73  Aligned_cols=10  Identities=30%  Similarity=0.587  Sum_probs=6.8

Q ss_pred             eCCccccccC
Q 045316          484 KCNICNKIFP  493 (568)
Q Consensus       484 ~C~~C~k~F~  493 (568)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            5777777764

Several members are annotated as putative helicases.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.77  E-value=0.71  Score=36.23  Aligned_cols=29  Identities=21%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCc
Q 045316           61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSG  107 (568)
Q Consensus        61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~  107 (568)
                      .|..||+.|.-.                  +..|-.|++||..|.-.
T Consensus        11 ~Cp~CG~kFYDL------------------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   11 TCPSCGAKFYDL------------------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCCCcchhccC------------------CCCCccCCCCCCccCcc
Confidence            677788777653                  34677788888777655

The function of members of this family is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=82.31  E-value=0.34  Score=31.76  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhc
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      ..|+--+.|+-||+.|.......+|...
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            3466679999999999999999999753

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=82.27  E-value=0.51  Score=34.54  Aligned_cols=13  Identities=31%  Similarity=0.641  Sum_probs=11.6

Q ss_pred             ceeCCccccccCc
Q 045316          482 EHKCNICNKIFPT  494 (568)
Q Consensus       482 ~f~C~~C~k~F~~  494 (568)
                      .+.|..||..|.-
T Consensus        53 IW~C~kCg~~fAG   65 (89)
T COG1997          53 IWKCRKCGAKFAG   65 (89)
T ss_pred             eEEcCCCCCeecc
Confidence            8999999999973

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.09  E-value=0.27  Score=42.18  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH-----HhcC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA-----AAGG  477 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H-----~~~H  477 (568)
                      ..|.|++  |-..|........|..+-+|.   .|.+|.+.|.       +...|..|+        +..|     ..+-
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~P-------t~hLLd~HI--------~E~HDs~Fqa~ve  139 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFP-------TGHLLDAHI--------LEWHDSLFQALVE  139 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCC-------chhhhhHHH--------HHHHHHHHHHHHH
Confidence            3577877  778888877777776443322   3544444444       333444444        3333     1233


Q ss_pred             CCCCceeCCc--cccccCccccccccc-ccC
Q 045316          478 GGSSEHKCNI--CNKIFPTGQALGGHK-RCH  505 (568)
Q Consensus       478 ~~~k~f~C~~--C~k~F~~~~~L~~H~-r~H  505 (568)
                      .|.--|+|-+  |+-.|.+...-+.|| ++|
T Consensus       140 RG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  140 RGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             cCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence            4566799965  999999999999994 777

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=80.54  E-value=0.96  Score=38.44  Aligned_cols=23  Identities=9%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccccc
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSA  441 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  441 (568)
                      .|.|++||..+             -|+-|-+||+||
T Consensus       134 ~~vC~vCGy~~-------------~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYTH-------------EGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence            59999999864             578999999998

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.47  E-value=1.1  Score=28.78  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=16.8

Q ss_pred             CCCCccccccccccCCc----hhHHHHHH
Q 045316           91 LGLPRTCSECGKQFTSG----KALGGHKR  115 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~----~~L~~H~~  115 (568)
                      +.....|.+|++.+...    +.|.+|++
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            46778899999998875    78999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=80.40  E-value=0.12  Score=53.26  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=26.1

Q ss_pred             CceeCCccccccCcccccccccccCcCCC
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCHWTGP  509 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H~~~~  509 (568)
                      -.|.|..|+|.|.....++.||++|.-.+
T Consensus       791 giFpCreC~kvF~KiKSrNAHMK~Hr~q~  819 (907)
T KOG4167|consen  791 GIFPCRECGKVFFKIKSRNAHMKTHRQQE  819 (907)
T ss_pred             ceeehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            36999999999999999999999996554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.39  E-value=0.41  Score=43.25  Aligned_cols=24  Identities=38%  Similarity=0.685  Sum_probs=19.2

Q ss_pred             CCCccccccccccCCchhHHHHHH
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      .+.+.|++|++.|.++.-+....+
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r   26 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIR   26 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCce
Confidence            477899999999998876666555

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.32  E-value=0.9  Score=29.20  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=17.2

Q ss_pred             CCcccccccccccCCh----hhhhhhh-hcC
Q 045316          404 AQTYSCLICNKSFDKH----QALGGHV-ASH  429 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~----~~L~~H~-~~H  429 (568)
                      .....|.+|++.+...    ++|.+|+ +.|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            4568899999999885    8999998 444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>smart00614 ZnF_BED BED zinc finger

Probab=80.05  E-value=0.88  Score=30.08  Aligned_cols=24  Identities=25%  Similarity=0.571  Sum_probs=20.3

Q ss_pred             ccccccccccCCh-----hhhhhhhh-cCC
Q 045316          407 YSCLICNKSFDKH-----QALGGHVA-SHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~-----~~L~~H~~-~H~  430 (568)
                      -.|.+|++.+...     ++|.+|++ +|.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            5799999999876     69999998 564

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	568
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	4e-06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	6e-06
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	8e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 406 TYSCLICNKSFDKHQALGGHVASHNKNKN 434
           +Y+C  C + F   QALGGH+  H +++ 
Sbjct: 6   SYTCSFCKREFRSAQALGGHMNVHRRDRA 34

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 483 HKCNICNKIFPTGQALGGHKRCH 505
           + C+ C + F + QALGGH   H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 438 SSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGG-----GGSSEHKCNICNKIF 492
           +  + +   D++G       ++      S+      A  G          ++C++C+ + 
Sbjct: 131 NELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL 190

Query: 493 PTGQALGGHKRCHWTGPAEALSSSS 517
            +   L  H   H       L+SS 
Sbjct: 191 FSPLDLDAHVASHGLHGNMTLTSSE 215

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 94  PRTCSECGKQFTSGKAL------GGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAG 147
              C +C   + +   L       GH R    +  N        PR  +  + ++ +E  
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK-RSLLEMEGKEDA 77

Query: 148 EEGNINNHICYVCHQSFRSVKSLYGHMRKH 177
           ++       C  C  SF S++ L  HM K 
Sbjct: 78  QK----VLKCMYCGHSFESLQDLSVHMIKT 103

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 17/112 (15%)

Query: 400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAAS 459
           + + A  + C  C+ ++D    L  H+      ++    +  +     SK   +      
Sbjct: 13  IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72

Query: 460 DEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGH--KRCHWTGP 509
            +E  +                  KC  C   F + Q L  H  K  H+   
Sbjct: 73  GKEDAQ---------------KVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/84 (16%), Positives = 18/84 (21%), Gaps = 29/84 (34%)

Query: 94  PRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNIN 153
              C  CG       +L  H+R           H            A             
Sbjct: 7   GLQCEICGFTCRQKASLNWHQR----------KHAETV--------AALR---------- 38

Query: 154 NHICYVCHQSFRSVKSLYGHMRKH 177
              C  C + F    S+  H  K 
Sbjct: 39  -FPCEFCGKRFEKPDSVAAHRSKS 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.78
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.76
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.75
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.71
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.7
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.66
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.61
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.61
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.61
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.6
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.59
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.59
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.58
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.58
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.56
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.56
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.55
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.55
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.55
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.55
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.55
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.54
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.54
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.51
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.5
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.48
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.44
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.44
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.42
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.41
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.41
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.4
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.4
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.4
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.4
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.4
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.39
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.39
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.39
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.39
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.39
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.38
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.38
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.38
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.37
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.36
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.36
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.34
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.33
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.3
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.29
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.28
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.28
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.25
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.23
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.23
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.22
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.21
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.21
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.2
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.2
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.2
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.19
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.17
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.15
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.14
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.11
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.09
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.09
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.08
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.02
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.01
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.98
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.94
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.88
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.88
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.81
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.81
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.79
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.72
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.68
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.66
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.65
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.64
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.63
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.63
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.57
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.57
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.52
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.51
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.5
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.49
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.49
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.48
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.47
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.46
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.45
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.83
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.45
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.44
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.43
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.43
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.42
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.41
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.4
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.39
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.39
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.39
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.72
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.34
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.34
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.68
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.33
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.32
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.62
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.28
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.24
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.22
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.08
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.08
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.87
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.06
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.97
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.89
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.88
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.75
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.74
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.41
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.08
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.9
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.6
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.98
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.56
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	90.29
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	89.76
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.34
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	86.47
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.62
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.89
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.47
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	82.12
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	81.71
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	81.66
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	80.67

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2e-37  Score=278.13  Aligned_cols=82  Identities=28%  Similarity=0.467  Sum_probs=73.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCcee
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHK  484 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~  484 (568)
                      ++|.|++|++.|.+...|..|+++|++++||+|++|++.|.....                    |..|+++|++++||+
T Consensus       104 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------L~~H~~~H~~~~~~~  163 (190)
T 2i13_A          104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN--------------------LHTHQRTHTGEKPYK  163 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH--------------------HHHHHHHHHCCCCEE
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHH--------------------HHHHHHhcCCCCCeE
Confidence            468999999999999999999999999999999999988877665                    899999999999999


Q ss_pred             CCccccccCcccccccccccCc
Q 045316          485 CNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       485 C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |.+|++.|.+...|..|+++|+
T Consensus       164 C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          164 CPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHTTC-
T ss_pred             CCCCCCccCCHHHHHHHHHhcC
Confidence            9999999999999999999994

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.7e-35  Score=264.20  Aligned_cols=60  Identities=22%  Similarity=0.366  Sum_probs=47.1

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCce
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEH  483 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f  483 (568)
                      +++|.|++||+.|.+...|..|+++|++++||+|++|++.|.....                    |..|+++|+|++||
T Consensus       131 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~--------------------L~~H~~~H~~~k~~  190 (190)
T 2i13_A          131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA--------------------LNVHQRTHTGKKTS  190 (190)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHH--------------------HHHHHTTC------
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHH--------------------HHHHHHhcCCCCCC
Confidence            4578999999999999999999999999999999999888877665                    88999999998886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=5.5e-32  Score=242.58  Aligned_cols=80  Identities=23%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             Ccccc--cccccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCC
Q 045316          405 QTYSC--LICNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGS  480 (568)
Q Consensus       405 k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~  480 (568)
                      ++|.|  ++||+.|.+...|..|+++|++++||.|++  |++.|.....                    |..|+++|+| 
T Consensus       103 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~--------------------L~~H~~~H~~-  161 (190)
T 1tf6_A          103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR--------------------LKRHEKVHAG-  161 (190)
T ss_dssp             SCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHH--------------------HHHHHTSSCS-
T ss_pred             ceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHH--------------------HHHHHHHhCC-
Confidence            46999  889999999999999999999999999988  9999987765                    9999999998 


Q ss_pred             CceeCCc---cccccCcccccccccccCcC
Q 045316          481 SEHKCNI---CNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       481 k~f~C~~---C~k~F~~~~~L~~H~r~H~~  507 (568)
                        |.|.+   |++.|.+...|.+|+++|++
T Consensus       162 --~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          162 --YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             --CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             --CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence              99999   99999999999999999954

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.6e-28  Score=212.37  Aligned_cols=85  Identities=20%  Similarity=0.332  Sum_probs=79.4

Q ss_pred             CCCcccccc--cccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHH-hcC
Q 045316          403 TAQTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAA-AGG  477 (568)
Q Consensus       403 ~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~-~~H  477 (568)
                      ++++|.|++  |++.|.+...|..|+++|++++||.|++  |++.|.....                    |..|+ ++|
T Consensus        64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------L~~H~~~~H  123 (155)
T 2gli_A           64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD--------------------RAKHQNRTH  123 (155)
T ss_dssp             CCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSST--------------------THHHHHHTT
T ss_pred             CCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHH--------------------HHHHHHHhc
Confidence            346799986  9999999999999999999999999998  9999998887                    99998 899


Q ss_pred             CCCCceeCCc--cccccCcccccccccccCcC
Q 045316          478 GGSSEHKCNI--CNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       478 ~~~k~f~C~~--C~k~F~~~~~L~~H~r~H~~  507 (568)
                      ++++||.|.+  |++.|.+...|..|+++|++
T Consensus       124 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999999999  99999999999999999953

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=6.5e-27  Score=209.50  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=76.3

Q ss_pred             Cccccc--ccccccCChhhhhhhh-hcC-CCCCCccc--cccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCC
Q 045316          405 QTYSCL--ICNKSFDKHQALGGHV-ASH-NKNKNVKE--SSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGG  478 (568)
Q Consensus       405 k~~~C~--~C~k~F~~~~~L~~H~-~~H-~~~k~~~C--~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~  478 (568)
                      ++|.|+  +|++.|.+...|.+|+ +.| .++++|.|  ++|++.|.....                    |..|+++|+
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~--------------------L~~H~~~H~  130 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ--------------------LKVHQFSHT  130 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHH--------------------HHHHHGGGS
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHH--------------------HHHHHHHhC
Confidence            358999  8999999999999999 778 57899999  889999987665                    999999999


Q ss_pred             CCCceeCCc--cccccCcccccccccccCcC
Q 045316          479 GSSEHKCNI--CNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       479 ~~k~f~C~~--C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +++||+|.+  |++.|.+...|.+|+++|++
T Consensus       131 ~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            999999988  99999999999999999954

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=3.3e-26  Score=197.81  Aligned_cols=85  Identities=19%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             CCccccccccccCCchhHHHHHH---HhccccCCCCcc--cCCCchhhhhhhccchhhhhhcCCcCCccccc--cccccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKR---ACLQKIKNGTTH--NNQNPRLIKKAVAVKPEEAGEEGNINNHICYV--CHQSFR  165 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~---~H~~~~~~~~~~--c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~k~F~  165 (568)
                      .+|.|+.|++.|.+...|.+|++   +|.++++|.|.+  |..|++.|.....|..|+++|.++++ |.|++  |++.|.
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~   80 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYS   80 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC-CCCCSTTCCCCCS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC-ccCCCCCCCCccc
Confidence            56788888888888888888887   577778877765  45666777777777777777777766 88875  888888


Q ss_pred             CchhHHHHhhhCC
Q 045316          166 SVKSLYGHMRKHP  178 (568)
Q Consensus       166 ~~~~L~~H~~~H~  178 (568)
                      +...|..|+++|.
T Consensus        81 ~~~~l~~H~~~h~   93 (155)
T 2gli_A           81 RLENLKTHLRSHT   93 (155)
T ss_dssp             SHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcC
Confidence            8888888887775

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=2.5e-25  Score=184.27  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA  473 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H  473 (568)
                      +..|.++|+|+++|+|++||++|.+...|.+|+++|++++||+|++|++.|.....                    |..|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H   69 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEY--------------------RTKH   69 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHH--------------------HHHH
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccc--------------------hhhh
Confidence            45667889999999999999999999999999999999999999999999987765                    9999


Q ss_pred             HhcCCCCCceeCCccccccCcccccccccccCcCC
Q 045316          474 AAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                      +++|+|++||.|++||+.|.+...|..|+++|+++
T Consensus        70 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             HHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             ccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            99999999999999999999999999999999654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=1.9e-23  Score=172.99  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             CCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchh
Q 045316           90 VLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKS  169 (568)
Q Consensus        90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~  169 (568)
                      .++++|.|++|++.|.+...|.+|+++|.++++                                |.|++|++.|.+...
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~~~   50 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP--------------------------------FECPKCGKCYFRKEN   50 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS--------------------------------CBCTTTCCBCSSHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC--------------------------------eECCCCCchhcCHHH
Confidence            467899999999999999999999999988877                                999999999999999


Q ss_pred             HHHHhhhC
Q 045316          170 LYGHMRKH  177 (568)
Q Consensus       170 L~~H~~~H  177 (568)
                      |..|++.|
T Consensus        51 l~~H~~~~   58 (124)
T 2dlq_A           51 LLEHEARN   58 (124)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhh
Confidence            99999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=3.8e-25  Score=183.24  Aligned_cols=110  Identities=13%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             ccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHhhhhhHhhhccccccc
Q 045316          302 TFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNELDD  381 (568)
Q Consensus       302 ~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (568)
                      .+..|.++|+|+++|.|..|++.|.....                                                   
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~---------------------------------------------------   37 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTS---------------------------------------------------   37 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHH---------------------------------------------------
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHH---------------------------------------------------
Confidence            35666778999999999999999988777                                                   


Q ss_pred             hhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhccc
Q 045316          382 AVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDE  461 (568)
Q Consensus       382 ~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~  461 (568)
                                  |..|+++|+++++|.|++||++|.+...|..|+++|+|++||.|++||+.|.....            
T Consensus        38 ------------L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~------------   93 (133)
T 2lt7_A           38 ------------LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQF------------   93 (133)
T ss_dssp             ------------HHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHH------------
T ss_pred             ------------HHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHH------------
Confidence                        88899999999999999999999999999999999999999999999999987775            


Q ss_pred             ccccchHHHHHHHhcCCCC------CceeCCccccccCc
Q 045316          462 ETGESSRELAAAAAGGGGS------SEHKCNICNKIFPT  494 (568)
Q Consensus       462 ~~~~~~~~L~~H~~~H~~~------k~f~C~~C~k~F~~  494 (568)
                              |..|+++|+++      ++|+|.+|++.|.+
T Consensus        94 --------L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           94 --------MSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             --------HHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             --------HHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence                    99999998776      46999999998864

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=4.2e-24  Score=176.99  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=88.5

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhc---CCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHH
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVAS---HNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSREL  470 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~---H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L  470 (568)
                      |..|+++|.++++|.|++|++.|.+...|.+|++.   |.++++|.|++|++.|.....                    |
T Consensus        23 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~--------------------l   82 (124)
T 2dlq_A           23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME--------------------L   82 (124)
T ss_dssp             HHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHH--------------------H
T ss_pred             HHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHH--------------------H
Confidence            88899999999999999999999999999999984   689999999999999987665                    9


Q ss_pred             HHHHhcCCCCCceeCCccccccCcccccccccccCcCCCC
Q 045316          471 AAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPA  510 (568)
Q Consensus       471 ~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~~~  510 (568)
                      ..|+++|++++||.|.+|++.|.+...|.+|++.+++++.
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999999985446543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=3.1e-24  Score=176.33  Aligned_cols=92  Identities=20%  Similarity=0.358  Sum_probs=87.6

Q ss_pred             CcccccccCCCCccccc--ccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHH
Q 045316          394 LKEEPVVMSTAQTYSCL--ICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELA  471 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~  471 (568)
                      |..|+++|.++++|.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.....                    |.
T Consensus        24 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~   83 (119)
T 2jp9_A           24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH--------------------LK   83 (119)
T ss_dssp             HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH--------------------HH
T ss_pred             HHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH--------------------HH
Confidence            88888899999999999  799999999999999999999999999999999987665                    99


Q ss_pred             HHHhcCCCCCceeC--CccccccCcccccccccccC
Q 045316          472 AAAAGGGGSSEHKC--NICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       472 ~H~~~H~~~k~f~C--~~C~k~F~~~~~L~~H~r~H  505 (568)
                      .|+++|+++++|+|  ++|++.|.+...|.+|+++|
T Consensus        84 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999  89999999999999999998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=1.6e-23  Score=173.26  Aligned_cols=84  Identities=23%  Similarity=0.284  Sum_probs=77.2

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      +++|.|++|++.|.+...|..|+++|+++++|.|++  |++.|.....                    |..|+++|++++
T Consensus        32 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------l~~H~~~h~~~~   91 (124)
T 1ubd_C           32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN--------------------LRTHVRIHTGDR   91 (124)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHH--------------------HHHHHHHHHCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHH--------------------HHHHHHHhCCCC
Confidence            357999999999999999999999999999999986  9999987665                    999999999999


Q ss_pred             ceeCC--ccccccCcccccccccccCcC
Q 045316          482 EHKCN--ICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       482 ~f~C~--~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +|.|.  .|++.|.+...|.+|+++|++
T Consensus        92 ~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           92 PYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            99996  599999999999999999943

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=5.9e-23  Score=177.15  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=78.7

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCce
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEH  483 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f  483 (568)
                      .|.|.+|++.|.+...|..|+++|+++++|.|++  |++.|.....                    |..|+++|++++||
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------L~~H~~~h~~~~~~  121 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN--------------------LKIHKRTHTGEKPF  121 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHH--------------------HHHHHTTTCSSCSB
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHH--------------------HHHHHHhhCCCCCc
Confidence            4899999999999999999999999999999998  9999987665                    99999999999999


Q ss_pred             eCCc--cccccCcccccccccccCcCCCCC
Q 045316          484 KCNI--CNKIFPTGQALGGHKRCHWTGPAE  511 (568)
Q Consensus       484 ~C~~--C~k~F~~~~~L~~H~r~H~~~~~~  511 (568)
                      .|.+  |++.|.+...|.+|+++| .++.+
T Consensus       122 ~C~~~~C~k~f~~~~~L~~H~~~H-~~~k~  150 (155)
T 2rpc_A          122 KCEFEGCDRRFANSSDRKKHMHVH-TSDKS  150 (155)
T ss_dssp             CCSSTTCCCCBSSHHHHHHSSTTT-TSCCC
T ss_pred             cCCCCCCCCccCCHHHHHHHHHHh-cCCCC
Confidence            9998  999999999999999999 44444

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.5e-22  Score=164.87  Aligned_cols=100  Identities=18%  Similarity=0.263  Sum_probs=90.3

Q ss_pred             CCCCCcccccccCCCCcccccccccccCChhhhhhhhhc--CCCCCCcc-ccccchhh--hccCchhhhhhhhhcccccc
Q 045316          390 GGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVAS--HNKNKNVK-ESSSASAA--AEDSKGEDKLAAAASDEETG  464 (568)
Q Consensus       390 ~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~-C~~C~~~f--~~~~~~f~~~~~l~~h~~~~  464 (568)
                      ....|..|+++|+++++|.|++|++.|.+...|..|+++  |.++++|. |++|++.|  .....               
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~---------------   67 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS---------------   67 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCC---------------
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHH---------------
Confidence            345699999999999999999999999999999999999  88888765 99999988  66655               


Q ss_pred             cchHHHHHHHhcCCCCCceeCCccccccCcccccccccccCcCCC
Q 045316          465 ESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGP  509 (568)
Q Consensus       465 ~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~~  509 (568)
                           |..|+++|++++||.|.+|++.|.+...|.+|+++|+...
T Consensus        68 -----l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           68 -----LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             -----CCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             -----HHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence                 8888999999999999999999999999999999985543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=4.8e-22  Score=171.40  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=106.8

Q ss_pred             ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCC--------ccccccccccCCchhHHHHHHHhccccCCCCccc
Q 045316           57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLP--------RTCSECGKQFTSGKALGGHKRACLQKIKNGTTHN  128 (568)
Q Consensus        57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~--------~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c  128 (568)
                      ...+.|..|++.|.+...|..|++.++.      +..+        |.|.+|++.|.+...|.+|+++|+++++|.|.+ 
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~------~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-   95 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHV------GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF-   95 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTS------CCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC-
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcC------CCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc-
Confidence            4556889999999999999999998441      3332        899999999999999999999999999955442 


Q ss_pred             CCCchhhhhhhccchhhhhhcCCcCCccccc--ccccccCchhHHHHhhhCC-CCCcccc
Q 045316          129 NQNPRLIKKAVAVKPEEAGEEGNINNHICYV--CHQSFRSVKSLYGHMRKHP-EREWRGV  185 (568)
Q Consensus       129 ~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~-~~~~~C~  185 (568)
                      ..|++.|.....|..|+++|+++++ |.|++  |++.|.+...|.+|+++|+ ++||.|.
T Consensus        96 ~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            1289999999999999999999999 99997  9999999999999999999 7999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=5.1e-22  Score=156.03  Aligned_cols=89  Identities=25%  Similarity=0.345  Sum_probs=82.8

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCC
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGS  480 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~  480 (568)
                      +.++++|.|.+|++.|.+...|..|+++|+++++|.|++|++.|.....                    |..|+++|+++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~~   62 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSS--------------------LNKHLRIHSDE   62 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHH--------------------HHHHHHHSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHH--------------------HHHHHHHhCCC
Confidence            4567899999999999999999999999999999999999999987665                    99999999999


Q ss_pred             CceeCCccccccCcccccccccccCcCCC
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCHWTGP  509 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H~~~~  509 (568)
                      ++|+|.+|++.|.+...|..|+++|++..
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999995443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=7.5e-22  Score=158.18  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=82.4

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      ....+++|.|.+|++.|.+...|.+|+++|+++++|.|++|++.|.....                    |..|+++|++
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~   70 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--------------------LRDHRYIHSK   70 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHH--------------------HHHHGGGSCC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHH--------------------HHHHHHHhCC
Confidence            34567899999999999999999999999999999999999999987665                    9999999999


Q ss_pred             CCceeCCccccccCcccccccccccCcCC
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                      +++|+|.+|++.|.+...|.+|+++|++.
T Consensus        71 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           71 EKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            99999999999999999999999999443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.7e-21  Score=159.91  Aligned_cols=106  Identities=16%  Similarity=0.309  Sum_probs=95.9

Q ss_pred             chhh--HhHhhcchHHHHHHHHHhhccccCCCCCCCcccc--ccccccCCchhHHHHHHHhccccCCCCcccCCCchhhh
Q 045316           61 AAEA--DDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIK  136 (568)
Q Consensus        61 ~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~  136 (568)
                      .|..  |++.|.+...|..|++.|.       ++++|.|+  .|++.|.+...|.+|+++|+++++|   .|..|++.|.
T Consensus         8 ~C~~~~C~~~f~~~~~l~~H~~~h~-------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~---~C~~C~~~f~   77 (119)
T 2jp9_A            8 MCAYPGCNKRYFKLSHLQMHSRKHT-------GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF---QCKTCQRKFS   77 (119)
T ss_dssp             CCCSTTSCCCBSCHHHHHHHHHHHH-------TTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCE---ECTTTCCEES
T ss_pred             eCCCCCCcchhCCHHHHHHHHHhhC-------CCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCc---cCCccCchhC
Confidence            4565  9999999999999999998       78999999  7999999999999999999999995   4557899999


Q ss_pred             hhhccchhhhhhcCCcCCccc--ccccccccCchhHHHHhhhC
Q 045316          137 KAVAVKPEEAGEEGNINNHIC--YVCHQSFRSVKSLYGHMRKH  177 (568)
Q Consensus       137 ~~~~l~~H~~~h~~~~~~~~C--~~C~k~F~~~~~L~~H~~~H  177 (568)
                      ....|..|+++|+++++ |.|  ++|++.|.+...|..|+++|
T Consensus        78 ~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           78 RSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CHHHHHHHHHHHHTCCC-EECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhcCCCC-eeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999998 999  88999999999999999887

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=1.5e-21  Score=161.40  Aligned_cols=116  Identities=16%  Similarity=0.269  Sum_probs=96.6

Q ss_pred             ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhh
Q 045316           57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIK  136 (568)
Q Consensus        57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~  136 (568)
                      ++.|.+..|++.|.+...|..|++.|.        .++|.|.+|++.|.+...|.+|+++|.++++|.|.+ ..|++.|.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-~~C~~~f~   75 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTHG--------PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF-EGCGKRFS   75 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGGS--------CCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCS-TTCCCEES
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHcC--------CCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC-CCCcCccC
Confidence            444433489999999999999998774        689999999999999999999999999999955432 13789999


Q ss_pred             hhhccchhhhhhcCCcCCcccc--cccccccCchhHHHHhhhCC-CCCc
Q 045316          137 KAVAVKPEEAGEEGNINNHICY--VCHQSFRSVKSLYGHMRKHP-EREW  182 (568)
Q Consensus       137 ~~~~l~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~-~~~~  182 (568)
                      ....|..|+++|.++++ |.|+  .|++.|.+...|..|+++|+ ++++
T Consensus        76 ~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           76 LDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CHHHHHHHHHHHHCCCC-CCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CHHHHHHHHHHhCCCCc-eECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            99999999999999998 9996  49999999999999999988 5554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.2e-21  Score=155.61  Aligned_cols=96  Identities=13%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA  473 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H  473 (568)
                      ...++++|+++++|.|.+|++.|.....|..|+++|  +++|+|++|++.|.....                    |..|
T Consensus         4 ~ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~--------------------l~~H   61 (107)
T 1wjp_A            4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPEL--------------------KQEH   61 (107)
T ss_dssp             CCCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHH--------------------HHHH
T ss_pred             ccccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHH--------------------HHHH
Confidence            345677899999999999999999999999999999  479999999999987665                    9999


Q ss_pred             HhcCCCCCceeCCccccccCcccccccccc-cCcCCCCCCC
Q 045316          474 AAGGGGSSEHKCNICNKIFPTGQALGGHKR-CHWTGPAEAL  513 (568)
Q Consensus       474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r-~H~~~~~~~~  513 (568)
                      ++ |++++||+|.+|++.|.+...|.+|++ +| +++.+.+
T Consensus        62 ~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H-~~~~~~~  100 (107)
T 1wjp_A           62 ES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVH-NQNNMAP  100 (107)
T ss_dssp             HH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTS-CCCCCCC
T ss_pred             HH-cCCCCCccCccccchhCCHHHHHHHHHHHc-CCCCCCC
Confidence            96 999999999999999999999999998 77 6655544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=8.1e-22  Score=159.09  Aligned_cols=88  Identities=20%  Similarity=0.256  Sum_probs=83.1

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      .|+++++|.| +|++.|.+...|.+|+++|+++++|.|++|++.|.....                    |..|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH--------------------LVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHH--------------------HHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHH--------------------HHHHHHHcCC
Confidence            5789999999 999999999999999999999999999999999987765                    9999999999


Q ss_pred             CCceeCCccccccCcccccccccccCcCC
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                      +++|+|.+|++.|.+...|.+|+++|+..
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHHcccc
Confidence            99999999999999999999999999543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=1.3e-21  Score=148.70  Aligned_cols=81  Identities=26%  Similarity=0.479  Sum_probs=77.2

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC  485 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C  485 (568)
                      ||.|++|++.|.+...|..|+++|+++++|.|++|++.|.....                    |..|+++|+++++|.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSD--------------------MKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHH--------------------HHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHH--------------------HHHHHHHhcCCCCCcC
Confidence            58999999999999999999999999999999999999987665                    9999999999999999


Q ss_pred             CccccccCcccccccccccCc
Q 045316          486 NICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       486 ~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      .+|++.|.+...|.+|+++|+
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHHC
T ss_pred             CCcchhhCChHHHHHHHHhhC
Confidence            999999999999999999994

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=2.3e-21  Score=150.22  Aligned_cols=85  Identities=19%  Similarity=0.425  Sum_probs=78.4

Q ss_pred             CCCccccc--ccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCC
Q 045316          403 TAQTYSCL--ICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGS  480 (568)
Q Consensus       403 ~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~  480 (568)
                      ++++|.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.....                    |..|+++|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDH--------------------LTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH--------------------HHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHH--------------------HHHHHHHcCCC
Confidence            35789998  599999999999999999999999999999999987665                    99999999999


Q ss_pred             CceeCCccccccCcccccccccccCcC
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      ++|.|.+|++.|.+...|.+|+++|++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            999999999999999999999999944

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.1e-20  Score=147.95  Aligned_cols=87  Identities=26%  Similarity=0.430  Sum_probs=80.2

Q ss_pred             CCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCC-
Q 045316          402 STAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGS-  480 (568)
Q Consensus       402 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~-  480 (568)
                      +++++|.|.+|++.|.+...|.+|+++|+++++|.|++|++.|.....                    |..|+++|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR--------------------MSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHH--------------------HHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHH--------------------HHHHHHHhcCCC
Confidence            567899999999999999999999999999999999999999987665                    99999999997 


Q ss_pred             -CceeCCccccccCcccccccccc-cCcCCC
Q 045316          481 -SEHKCNICNKIFPTGQALGGHKR-CHWTGP  509 (568)
Q Consensus       481 -k~f~C~~C~k~F~~~~~L~~H~r-~H~~~~  509 (568)
                       ++|+|.+|++.|.+...|..|++ +| +++
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H-~~~   92 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVH-SGP   92 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTS-CCC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhc-CCC
Confidence             99999999999999999999986 78 443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.78  E-value=2.6e-20  Score=129.33  Aligned_cols=59  Identities=12%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      .||||+|++|||+|...+.|.+|+++|+|++||.|++||++|...+.                    |..|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~--------------------L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSE--------------------VNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHH--------------------HHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHH--------------------HHHHhCccCCCC
Confidence            37899999999999999999999999999999999999999988776                    999999999986

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.76  E-value=7.4e-20  Score=141.34  Aligned_cols=82  Identities=22%  Similarity=0.405  Sum_probs=77.3

Q ss_pred             CCcccccc--cccccCChhhhhhhhhcCCCCCCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          404 AQTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       404 ~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      .++|.|++  ||+.|.+...|..|+++|+++++|.|+  .|++.|.....                    |..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDE--------------------LTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHH--------------------HHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHH--------------------HHHHHHHcCC
Confidence            45799999  999999999999999999999999997  59999977665                    9999999999


Q ss_pred             CCceeCCccccccCcccccccccccC
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      +++|.|.+|++.|.+...|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999999999

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.75  E-value=1.3e-19  Score=143.38  Aligned_cols=84  Identities=23%  Similarity=0.390  Sum_probs=78.1

Q ss_pred             CCCcccccc--cccccCChhhhhhhhhcCCCCCCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCC
Q 045316          403 TAQTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGG  478 (568)
Q Consensus       403 ~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~  478 (568)
                      ..++|.|.+  |++.|.....|..|+++|+++++|.|+  .|++.|.....                    |..|+++|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDE--------------------LTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHH--------------------HHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHH--------------------HHHHHHHhC
Confidence            456899997  999999999999999999999999996  69999876665                    999999999


Q ss_pred             CCCceeCCccccccCcccccccccccCc
Q 045316          479 GSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       479 ~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ++++|+|.+|++.|.+...|..|+++|+
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            9999999999999999999999999994

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.75  E-value=6.7e-19  Score=122.16  Aligned_cols=58  Identities=28%  Similarity=0.560  Sum_probs=54.8

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY  171 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~  171 (568)
                      ||||.|.+||+.|.+...|.+|+++|+|++|                                |.|++||++|.+.+.|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp--------------------------------~~C~~C~k~F~~~~~L~   49 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRP--------------------------------RSCPECGKCFRDQSEVN   49 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCC--------------------------------EECTTTCCEESSHHHHH
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcC--------------------------------eECCCCCCCcCCHHHHH
Confidence            7999999999999999999999999999988                                99999999999999999


Q ss_pred             HHhhhCCCCC
Q 045316          172 GHMRKHPERE  181 (568)
Q Consensus       172 ~H~~~H~~~~  181 (568)
                      +|+++|+++|
T Consensus        50 ~H~~~Htgep   59 (60)
T 4gzn_C           50 RHLKVHQNKP   59 (60)
T ss_dssp             HHGGGGSCC-
T ss_pred             HHhCccCCCC
Confidence            9999999654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.3e-19  Score=145.91  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHH--hccccCCCCcccCCCchhh--hhhhccchhhhh
Q 045316           72 EDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRA--CLQKIKNGTTHNNQNPRLI--KKAVAVKPEEAG  147 (568)
Q Consensus        72 ~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~~~~c~~c~~~f--~~~~~l~~H~~~  147 (568)
                      ...|..|+++|.       ++++|.|++|++.|.+...|.+|+++  |.+.+++  ..|..|++.|  .....|..|+++
T Consensus         4 ~~~l~~H~~~H~-------~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~--~~C~~C~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH--ETDNNNPKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCCCCCCCCC-------CCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC--CCCCCCCSCCSSCCCCCCCCCCCS
T ss_pred             chhhhhheeeeC-------CCCCEECCccCchhcCHHHHHHHHHHhCccccCCC--ccCCCCCcccccccHHHHHHHhhc
Confidence            345677887777       78999999999999999999999998  7777663  2267888888  889999999999


Q ss_pred             hcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316          148 EEGNINNHICYVCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       148 h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  178 (568)
                      |.++++ |.|++|++.|.+...|.+|+++|.
T Consensus        75 H~~~~~-~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           75 EDAQKV-LKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             CCCCSS-CBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             cCCCcc-eECCCCCCccCCHHHHHHHHHHhC
Confidence            999999 999999999999999999999976

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=2.5e-18  Score=137.51  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL  170 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L  170 (568)
                      .+++|.|.+|++.|.+...|.+|+++|.++++|.   |..|++.|.....|..|+++|.++++ |.|++|++.|.+...|
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~---C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT---CDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCB---CSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCSSHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcC---CCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCcccCHHHH
Confidence            3556666666666666666666666666666633   33456666666666666666666666 9999999999999999


Q ss_pred             HHHhhhCC-CCCccc
Q 045316          171 YGHMRKHP-EREWRG  184 (568)
Q Consensus       171 ~~H~~~H~-~~~~~C  184 (568)
                      ..|+++|. +++|.+
T Consensus        90 ~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           90 AVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHTTSCCCCCC
T ss_pred             HHHHHHhCCCCCCcC
Confidence            99999998 677754

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.2e-17  Score=133.59  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             cccCCCCCCccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcc
Q 045316           48 KLKIPITKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTH  127 (568)
Q Consensus        48 ~~~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  127 (568)
                      +++.|.+++++  .|..|++.|.....|..|++.|.         ++|.|.+|++.|.+...|.+|++ |++++|     
T Consensus         7 ~~~~h~~~~~~--~C~~C~~~f~~~~~l~~H~~~H~---------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~-----   69 (107)
T 1wjp_A            7 GASPVENKEVY--QCRLCNAKLSSLLEQGSHERLCR---------NAAVCPYCSLRFFSPELKQEHES-KCEYKK-----   69 (107)
T ss_dssp             CCCCCCCCCCC--BCTTTCCBCSSHHHHHHHHHHHH---------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGG-----
T ss_pred             cCcccCCCcCe--ECCCCCCccCCHHHHHHHHHHCC---------CCccCCCCCCccCCHHHHHHHHH-cCCCCC-----
Confidence            34455555443  44667777777777777776664         46777777777777777777764 666655     


Q ss_pred             cCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh-hCC-CCCccccC
Q 045316          128 NNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR-KHP-EREWRGVQ  186 (568)
Q Consensus       128 c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~-~~~~~C~~  186 (568)
                                                 |.|++|++.|.+...|..|++ +|. +++|.|.-
T Consensus        70 ---------------------------~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           70 ---------------------------LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             ---------------------------GEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             ---------------------------ccCccccchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence                                       999999999999999999997 888 78887753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=5e-18  Score=133.02  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=57.5

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL  170 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L  170 (568)
                      ++++|.|.+|++.|.+...|..|+++|.++++|   .|..|++.|.....|..|+++|.++++ |.|++|++.|.+...|
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~---~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPY---KCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSE---ECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEESSHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCE---eCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHH
Confidence            455566666666666666666666666555553   233445555555555555555555555 9999999999999999


Q ss_pred             HHHhhhCC
Q 045316          171 YGHMRKHP  178 (568)
Q Consensus       171 ~~H~~~H~  178 (568)
                      ..|+++|+
T Consensus        81 ~~H~~~h~   88 (96)
T 2dmd_A           81 TVHLRSHT   88 (96)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHhc
Confidence            99999998

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.71  E-value=4.3e-18  Score=129.07  Aligned_cols=79  Identities=24%  Similarity=0.398  Sum_probs=59.6

Q ss_pred             chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhc
Q 045316           61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVA  140 (568)
Q Consensus        61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~  140 (568)
                      .|..|++.|.....|..|++.|.       ++++|.|.+|++.|.+...|.+|+++|+++++                  
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~-------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------------------   57 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLIHS-------DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP------------------   57 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHH-------TCCCEECSSSCCEESSHHHHHHHHHHHHTCCC------------------
T ss_pred             cCCCCcccccCchhHHHHHHHcC-------CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC------------------
Confidence            45666666666666666666665       55666666666666666666666666666555                  


Q ss_pred             cchhhhhhcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316          141 VKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       141 l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  178 (568)
                                    |.|++|++.|.+...|..|+++|+
T Consensus        58 --------------~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           58 --------------HKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             --------------EECTTTSCEESSHHHHHHHHHHHC
T ss_pred             --------------CcCCCcchhhCChHHHHHHHHhhC
Confidence                          999999999999999999999986

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=7.5e-20  Score=140.68  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCce
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEH  483 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f  483 (568)
                      +++|.|++||+.|.+...|..|+++|++++||.|++|++.|.....                    |..|+++|.+ .+|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE--------------------RKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHH--------------------HHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHH--------------------HHHHHHHhCC-Ccc
Confidence            4789999999999999999999999999999999999999987665                    9999999885 899


Q ss_pred             eCCccccccCcccccccccccC
Q 045316          484 KCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       484 ~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      .|..|++.|.+...|..|++.+
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999998765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=6e-18  Score=129.55  Aligned_cols=80  Identities=15%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             CCcccccccCCCCcccccccccccCChhhhhhhhhcCCCC----CCccccccchhhhccCchhhhhhhhhcccccccchH
Q 045316          393 ALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKN----KNVKESSSASAAAEDSKGEDKLAAAASDEETGESSR  468 (568)
Q Consensus       393 ~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~----k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~  468 (568)
                      ++..|+++|+++++|.|.+|++.|.....|.+|+++|+++    ++|+|++|++.|.....                   
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~-------------------   62 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT-------------------   62 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHH-------------------
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHH-------------------
Confidence            5788999999999999999999999999999999887765    89999999999987665                   


Q ss_pred             HHHHHHhcCCCCCceeCCcccccc
Q 045316          469 ELAAAAAGGGGSSEHKCNICNKIF  492 (568)
Q Consensus       469 ~L~~H~~~H~~~k~f~C~~C~k~F  492 (568)
                       |..|+++|+++++|.|..|+..|
T Consensus        63 -L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           63 -MARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             -HHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             -HHHHHHHccCCCCcccCCCCCCC
Confidence             99999999999999999999876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=4.7e-18  Score=131.42  Aligned_cols=83  Identities=17%  Similarity=0.300  Sum_probs=55.0

Q ss_pred             CCCcccc--ccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchh
Q 045316           92 GLPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKS  169 (568)
Q Consensus        92 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~  169 (568)
                      +++|.|+  .|++.|.+...|.+|+++|.++++|   .|..|++.|.....|..|+++|.++++ |.|++|++.|.+...
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~---~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~   77 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPF---QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDE   77 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCE---ECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCc---cCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCchhCCHHH
Confidence            3455555  3555555555555555555555552   233445555555555555555555555 999999999999999


Q ss_pred             HHHHhhhCC
Q 045316          170 LYGHMRKHP  178 (568)
Q Consensus       170 L~~H~~~H~  178 (568)
                      |..|+++|+
T Consensus        78 l~~H~~~H~   86 (90)
T 1a1h_A           78 RKRHTKIHL   86 (90)
T ss_dssp             HHHHHGGGG
T ss_pred             HHHHHHHhc
Confidence            999999997

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.1e-17  Score=124.82  Aligned_cols=72  Identities=22%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA  473 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H  473 (568)
                      ...+...+.++++|.|++|++.|.....|.+|+++|++++||+|++|++.|.....                    |..|
T Consensus         6 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------L~~H   65 (77)
T 2cot_A            6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH--------------------LIGH   65 (77)
T ss_dssp             CCCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHH--------------------HHHH
T ss_pred             CCCCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHH--------------------HHHH
Confidence            34455667889999999999999999999999999999999999999999987765                    9999


Q ss_pred             HhcCCCCCceeC
Q 045316          474 AAGGGGSSEHKC  485 (568)
Q Consensus       474 ~~~H~~~k~f~C  485 (568)
                      +++|++++||+|
T Consensus        66 ~~~H~~~~p~~C   77 (77)
T 2cot_A           66 HRVHTGSGPSSG   77 (77)
T ss_dssp             GGGSCCCCCCCC
T ss_pred             HHHhCCCCCCCC
Confidence            999999999998

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.6e-18  Score=128.39  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             CCCCcccccc--cccccCChhhhhhhhh-cCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhc
Q 045316          402 STAQTYSCLI--CNKSFDKHQALGGHVA-SHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAG  476 (568)
Q Consensus       402 ~~~k~~~C~~--C~k~F~~~~~L~~H~~-~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~  476 (568)
                      +++++|.|..  |++.|.+...|.+|++ +|++++||+|++  |++.|.....                    |..|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~--------------------L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH--------------------LKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHH--------------------HHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHH--------------------HHHHHHH
Confidence            5678899998  9999999999999999 799999999999  9999987665                    9999999


Q ss_pred             CCCCCceeCCccccccC
Q 045316          477 GGGSSEHKCNICNKIFP  493 (568)
Q Consensus       477 H~~~k~f~C~~C~k~F~  493 (568)
                      |++++||.|.+|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            99999999999999994

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.9e-17  Score=129.37  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCC--cCCcccccccccccCch
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGN--INNHICYVCHQSFRSVK  168 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~--~~~~~C~~C~k~F~~~~  168 (568)
                      ++++|.|.+|++.|.+...|.+|+++|.++++|   .|..|++.|.....|..|+++|.++  ++ |.|++|++.|.+..
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~---~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~~f~~~~   79 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY---SCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGKGFSRPD   79 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSE---ECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCCCBSSHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCC---cCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccchhCCHH
Confidence            566777777777777777777777777777763   3445667777777777777777665  55 99999999999999


Q ss_pred             hHHHHhh-hCCC
Q 045316          169 SLYGHMR-KHPE  179 (568)
Q Consensus       169 ~L~~H~~-~H~~  179 (568)
                      .|..|++ +|.+
T Consensus        80 ~L~~H~~~~H~~   91 (95)
T 2yt9_A           80 HLNGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHhcCC
Confidence            9999986 7863

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.68  E-value=2.3e-18  Score=131.59  Aligned_cols=78  Identities=23%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             cccc--cccccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          406 TYSC--LICNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       406 ~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      ||.|  ++||+.|.+...|..|+++|++++||+|++  |++.|.....                    |..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~--------------------l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR--------------------LKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHH--------------------HHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHH--------------------HHHHHHHhCC--
Confidence            5899  999999999999999999999999999988  9999987665                    9999999998  


Q ss_pred             ceeCCc---cccccCcccccccccccCc
Q 045316          482 EHKCNI---CNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       482 ~f~C~~---C~k~F~~~~~L~~H~r~H~  506 (568)
                       |.|.+   |++.|.+...|.+|+++|+
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence             99999   9999999999999999984

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.4e-17  Score=129.53  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhh-cC---CCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH-H
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVA-SH---NKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA-A  474 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H---~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H-~  474 (568)
                      ..+++++|.|++||+.|..++.|.+|++ +|   ++++||.|++||+.|...+.                    |..| +
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~--------------------L~~H~~   71 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA--------------------LSEHNL   71 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHH--------------------HHTHHH
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHH--------------------HHHHHH
Confidence            3568899999999999999999999998 59   67999999999999988776                    9999 8


Q ss_pred             hcCCCCCceeCCcccc
Q 045316          475 AGGGGSSEHKCNICNK  490 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k  490 (568)
                      ++|+|++||.|.++.+
T Consensus        72 r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           72 KYHPGEENFKLTMVKR   87 (102)
T ss_dssp             HTSTTCCCEEEEECCC
T ss_pred             HhcCCCCCeeCCcccC
Confidence            9999999999998543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1e-17  Score=131.26  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             cccCChhhhhhhhhcCCCCCCccccccchhhh-ccCchhhhhhhhhcccccccchHHHHHHHhcCCC-CCceeCCccccc
Q 045316          414 KSFDKHQALGGHVASHNKNKNVKESSSASAAA-EDSKGEDKLAAAASDEETGESSRELAAAAAGGGG-SSEHKCNICNKI  491 (568)
Q Consensus       414 k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~-~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~-~k~f~C~~C~k~  491 (568)
                      ..+.....+.+|+++|+++++|+|++|++.|. ....                    |..|+++|++ ++||.|.+|++.
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~--------------------L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVG--------------------LKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHH--------------------HHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHH--------------------HHHHHHHHcCCCCCEECCCCCCc
Confidence            45667778888888898889999988888887 6665                    8888889888 899999999999


Q ss_pred             cCcccccccccccCcC
Q 045316          492 FPTGQALGGHKRCHWT  507 (568)
Q Consensus       492 F~~~~~L~~H~r~H~~  507 (568)
                      |.++..|.+|+++|++
T Consensus        64 F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CSCHHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHHHHHcC
Confidence            9999999999999943

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=4e-17  Score=131.33  Aligned_cols=83  Identities=18%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL  170 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L  170 (568)
                      ++++|.| .|++.|.+...|.+|+++|.++++|   .|..|++.|.....|..|+++|.++++ |.|++|++.|.+...|
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~---~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY---GCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSE---ECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEESCHHHH
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCc---cCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchhcCHHHH
Confidence            5666666 6666666666666666666666663   334456666666666666666666666 9999999999999999


Q ss_pred             HHHhhhCC
Q 045316          171 YGHMRKHP  178 (568)
Q Consensus       171 ~~H~~~H~  178 (568)
                      .+|+++|.
T Consensus        82 ~~H~~~~~   89 (110)
T 2csh_A           82 HRHVTSCT   89 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99999885

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.6e-17  Score=122.75  Aligned_cols=71  Identities=13%  Similarity=0.196  Sum_probs=47.9

Q ss_pred             hhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCCCC-CceeCCccccccCcccccc
Q 045316          422 LGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGGGS-SEHKCNICNKIFPTGQALG  499 (568)
Q Consensus       422 L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~~~-k~f~C~~C~k~F~~~~~L~  499 (568)
                      |.+|+++|++++||.|++|++.|.....                    |..|++ .|+++ ++|+|.+|++.|.+...|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~   62 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGT--------------------MKMHILQKHTENVAKFHCPHCDTVIARKSDLG   62 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHH--------------------HHHHHHHHSSSSCSSEECSSSSCEESSHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHH--------------------HHHHHHHhcCCCCCccCCCCCCCccCCHHHHH
Confidence            4455555555555555555555544433                    555554 45553 6889999999999999999


Q ss_pred             cccccCcCCCCCC
Q 045316          500 GHKRCHWTGPAEA  512 (568)
Q Consensus       500 ~H~r~H~~~~~~~  512 (568)
                      +|+++|++++.++
T Consensus        63 ~H~~~~H~~~~p~   75 (77)
T 2ct1_A           63 VHLRKQHSYSGPS   75 (77)
T ss_dssp             HHHHHTSCCSCCC
T ss_pred             HHHHHhCCCCCCC
Confidence            9999887766543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=9.2e-17  Score=126.83  Aligned_cols=76  Identities=22%  Similarity=0.384  Sum_probs=53.8

Q ss_pred             hHhHhhcchHHHHHHHHHhhccccCCCCCCCcccc--ccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhcc
Q 045316           64 ADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAV  141 (568)
Q Consensus        64 ~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l  141 (568)
                      .|++.|.....|..|++.|.       ++++|.|.  .|++.|.+...|.+|+++|+++++                   
T Consensus        22 ~C~~~f~~~~~l~~H~~~h~-------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-------------------   75 (100)
T 2ebt_A           22 GCTKVYTKSSHLKAHLRTHT-------GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-------------------   75 (100)
T ss_dssp             SCCCEESCHHHHHHHHHHHS-------CCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS-------------------
T ss_pred             CCCCcccCHHHHHHHHHHhC-------CCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-------------------
Confidence            36666666666666666555       45566664  366666666666666666655554                   


Q ss_pred             chhhhhhcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316          142 KPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       142 ~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  178 (568)
                                   |.|++|++.|.+...|..|+++|+
T Consensus        76 -------------~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           76 -------------FQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             -------------CBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             -------------eECCCCcCccCCHHHHHHHHHHhC
Confidence                         999999999999999999999986

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.63  E-value=1.4e-16  Score=122.79  Aligned_cols=75  Identities=21%  Similarity=0.383  Sum_probs=51.9

Q ss_pred             HhHhhcchHHHHHHHHHhhccccCCCCCCCcccc--ccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccc
Q 045316           65 DDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVK  142 (568)
Q Consensus        65 C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~  142 (568)
                      |++.|.....|..|++.|.       ++++|.|+  .|++.|.+...|.+|+++|+++++                    
T Consensus        13 C~~~f~~~~~l~~H~~~h~-------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~--------------------   65 (89)
T 2wbs_A           13 CGKTYTKSSHLKAHLRTHT-------GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP--------------------   65 (89)
T ss_dssp             TCCEESSHHHHHHHHTTSC-------SSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC--------------------
T ss_pred             CCCcCCCHHHHHHHHHhcC-------CCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC--------------------
Confidence            5555555555555555554       45555554  355555555555555555555544                    


Q ss_pred             hhhhhhcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316          143 PEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       143 ~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~  178 (568)
                                  |.|++|++.|.+...|..|+++|.
T Consensus        66 ------------~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           66 ------------FQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             ------------EECSSSSCEESSHHHHHHHGGGGC
T ss_pred             ------------ccCCCCCcccCCHHHHHHHHHhhC
Confidence                        999999999999999999999984

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-16  Score=118.22  Aligned_cols=64  Identities=17%  Similarity=0.273  Sum_probs=59.8

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      .++++++|.|++|++.|.+...|.+|+++|++++||+|++|++.|.....                    |..|+++|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN--------------------LKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHH--------------------HHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHH--------------------HHHHHHhcCC
Confidence            46678899999999999999999999999999999999999999987765                    9999999999


Q ss_pred             CCce
Q 045316          480 SSEH  483 (568)
Q Consensus       480 ~k~f  483 (568)
                      ++||
T Consensus        71 ~kp~   74 (74)
T 2lce_A           71 EKPY   74 (74)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9997

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=6.8e-17  Score=118.68  Aligned_cols=66  Identities=27%  Similarity=0.363  Sum_probs=58.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCcccccccccc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKR  503 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r  503 (568)
                      .+.++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|++.|.+...|.+|++
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSI--------------------LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHH--------------------HHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHH--------------------HHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHH
Confidence            35678889999999888888876665                    9999999999999999999999999999999999


Q ss_pred             cCcCCC
Q 045316          504 CHWTGP  509 (568)
Q Consensus       504 ~H~~~~  509 (568)
                      +|++++
T Consensus        64 ~H~~~~   69 (72)
T 1x6e_A           64 IHTSGP   69 (72)
T ss_dssp             HHHSSS
T ss_pred             hcCCCC
Confidence            996554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=3.9e-16  Score=116.81  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             CCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHH
Q 045316          393 ALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAA  472 (568)
Q Consensus       393 ~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~  472 (568)
                      .....+.++.+.++|.|++|||.|.++..|.+|+++|++++||.|++|++.|.....                    |.+
T Consensus        15 ~~~~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~   74 (85)
T 2lv2_A           15 EGAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPG--------------------LTR   74 (85)
T ss_dssp             CCCSCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHH--------------------HHH
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHH--------------------HHH
Confidence            344455677888999999999999999999999999999999999999999987776                    999


Q ss_pred             HH-hcCCCCC
Q 045316          473 AA-AGGGGSS  481 (568)
Q Consensus       473 H~-~~H~~~k  481 (568)
                      |+ ++|++|.
T Consensus        75 H~~~~H~~E~   84 (85)
T 2lv2_A           75 HINKCHPSEN   84 (85)
T ss_dssp             HHHTTCTTCC
T ss_pred             hCcccCcCCC
Confidence            96 6899875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=2.2e-16  Score=118.14  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             hhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccccccc-cc
Q 045316          426 VASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHK-RC  504 (568)
Q Consensus       426 ~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~-r~  504 (568)
                      +.++.+.++|.|++||+.|.....                    |.+|+++|++++||+|.+|+++|.++..|.+|+ ++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGA--------------------QERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKC   79 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHH--------------------HHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHH--------------------HhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCccc
Confidence            456888999999999999988776                    999999999999999999999999999999997 56


Q ss_pred             CcCCC
Q 045316          505 HWTGP  509 (568)
Q Consensus       505 H~~~~  509 (568)
                      | +++
T Consensus        80 H-~~E   83 (85)
T 2lv2_A           80 H-PSE   83 (85)
T ss_dssp             C-TTC
T ss_pred             C-cCC
Confidence            7 443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.2e-16  Score=123.96  Aligned_cols=73  Identities=10%  Similarity=0.056  Sum_probs=63.3

Q ss_pred             cccCChhhhhhhhhcCCCCCCccccccchhh-hccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcccccc
Q 045316          414 KSFDKHQALGGHVASHNKNKNVKESSSASAA-AEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIF  492 (568)
Q Consensus       414 k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f-~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F  492 (568)
                      .+|.....|..|+++|++++||.|++|++.| .....                    |..|+++| +++||.|.+|+|.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~--------------------L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEG--------------------LKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHH--------------------HHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHH--------------------HHHHHHHH-CCCCeECCCCCCee
Confidence            4678888889999999999999999988888 76665                    88999999 89999999999999


Q ss_pred             Ccccccccc-cccCcC
Q 045316          493 PTGQALGGH-KRCHWT  507 (568)
Q Consensus       493 ~~~~~L~~H-~r~H~~  507 (568)
                      .++..|++| +++|++
T Consensus        73 ~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNS   88 (96)
T ss_dssp             SSHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHhHHhcCC
Confidence            999999999 889943

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.2e-15  Score=118.23  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             hhcchHHHHHHHHHhhccccCCCCCCCcccccccccc-CCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhh
Q 045316           68 QFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQF-TSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEA  146 (568)
Q Consensus        68 ~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F-~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~  146 (568)
                      .|.....|..|++.|.       ++++|.|++|++.| .+...|+.|+++| +++|                        
T Consensus        15 ~~~~~~~~~~~~~~~~-------~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~------------------------   62 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIV-------DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM------------------------   62 (96)
T ss_dssp             SSCTTCHHHHHHHHHH-------HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC------------------------
T ss_pred             CCCCchHHHHHHHHhc-------CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC------------------------
Confidence            4567788899999888       68999999999999 9999999999999 8887                        


Q ss_pred             hhcCCcCCcccccccccccCchhHHHH-hhhCCCCCc
Q 045316          147 GEEGNINNHICYVCHQSFRSVKSLYGH-MRKHPEREW  182 (568)
Q Consensus       147 ~h~~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~  182 (568)
                              |.|.+|++.|.++..|..| +++|+++||
T Consensus        63 --------~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           63 --------FTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             --------CCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             --------eECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence                    9999999999999999999 899997765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7e-17  Score=126.48  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=70.1

Q ss_pred             cCCCCCcccccccCCCCcccccccccccC-ChhhhhhhhhcCCC-CCCccccccchhhhccCchhhhhhhhhcccccccc
Q 045316          389 AGGGALKEEPVVMSTAQTYSCLICNKSFD-KHQALGGHVASHNK-NKNVKESSSASAAAEDSKGEDKLAAAASDEETGES  466 (568)
Q Consensus       389 ~~~~~l~~h~~~h~~~k~~~C~~C~k~F~-~~~~L~~H~~~H~~-~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~  466 (568)
                      .....+..|+++|+++++|.|++|++.|. ....|.+|+++|++ ++||+|++|++.|.....                 
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~-----------------   69 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAG-----------------   69 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHH-----------------
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHH-----------------
Confidence            33455788999999999999999999999 99999999999999 999999999999987765                 


Q ss_pred             hHHHHHHHhcCCCCCceeCC
Q 045316          467 SRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       467 ~~~L~~H~~~H~~~k~f~C~  486 (568)
                         |..|+++|++++|+...
T Consensus        70 ---L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           70 ---LNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             ---HHHHHHHHSCSCSSCCC
T ss_pred             ---HHHHHHHHcCCCCCCCC
Confidence               99999999999986543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-16  Score=117.11  Aligned_cols=71  Identities=11%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             CCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHH
Q 045316          391 GGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSREL  470 (568)
Q Consensus       391 ~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L  470 (568)
                      ...|..|+++|.++++|.|++||+.|.+...|..       +++|.|++|++.|.....                    |
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~--------------------l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAA--------------------L   55 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCS--------------------S
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHH--------------------H
Confidence            3568999999999999999999999999999998       799999999999998887                    9


Q ss_pred             HHHHhcCCCCCceeCCcc
Q 045316          471 AAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       471 ~~H~~~H~~~k~f~C~~C  488 (568)
                      ..|+++|++++||+|.+|
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999999999999999998

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=1.8e-16  Score=121.61  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=48.5

Q ss_pred             chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhc
Q 045316           61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVA  140 (568)
Q Consensus        61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~  140 (568)
                      .|..|++.|.....|..|++.|.       ++++|.|++|++.|.+...|.+|+++|++                     
T Consensus         5 ~C~~C~k~f~~~~~L~~H~~~H~-------~~~~~~C~~C~k~f~~~~~L~~H~~~h~~---------------------   56 (88)
T 1llm_C            5 QCRICMRNFSRSDHLTTHIRTHT-------GEKPFACDICGRKFARSDERKRHRDIQHI---------------------   56 (88)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHH-------CCCCEECTTTCCEESSHHHHHHHHHHHTH---------------------
T ss_pred             cCCCCCCccCCHHHHHHHHHHcC-------CCCCccCCCCCCccCCHHHHHHHHHHhCC---------------------
Confidence            34555555555555555555554       44555555555555555555555555442                     


Q ss_pred             cchhhhhhcCCcCCcccccccccccCchhHHHHhhhC
Q 045316          141 VKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKH  177 (568)
Q Consensus       141 l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H  177 (568)
                                 .+ |.|+.|++.|.+...|..|++.+
T Consensus        57 -----------~~-~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C           57 -----------LP-ILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             -----------HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------Cc-chHHHHHHHHHHHhhhHHHHHHH
Confidence                       22 99999999999999999998654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=2.1e-15  Score=113.05  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             CCccccchhhHhHhhcchHHHHHHHH-HhhccccCCCCCCCccccc--cccccCCchhHHHHHHHhccccCCCCcccCCC
Q 045316           55 KPPAAAAAEADDRQFMEEDLLLQREQ-EQDQQDRGGVLGLPRTCSE--CGKQFTSGKALGGHKRACLQKIKNGTTHNNQN  131 (568)
Q Consensus        55 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c  131 (568)
                      ++++.|.|+.|++.|.+...|..|++ .|.       ++++|.|++  |++.|.++..|.+|+++|++++|         
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~---------   68 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD---------   68 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGG-------SCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC---------
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhC-------CCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC---------
Confidence            44555655667777777777777776 455       567777776  77777777777777777776666         


Q ss_pred             chhhhhhhccchhhhhhcCCcCCccccccccccc
Q 045316          132 PRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFR  165 (568)
Q Consensus       132 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~  165 (568)
                                             |.|++|+++|.
T Consensus        69 -----------------------~~C~~C~k~F~   79 (79)
T 2dlk_A           69 -----------------------YICEFSGPSSG   79 (79)
T ss_dssp             -----------------------CSCCSSSCCCC
T ss_pred             -----------------------eeCCCCCCCCC
Confidence                                   99999999884

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=6e-16  Score=112.90  Aligned_cols=61  Identities=16%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             cCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCcccccccccccCcC
Q 045316          428 SHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       428 ~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +|++++||+|++|++.|.....                    |..|+++|+++++|+|.+|++.|.+...|.+|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAA--------------------LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHH--------------------HHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            5788899999888888876665                    99999999999999999999999999999999999954


Q ss_pred             C
Q 045316          508 G  508 (568)
Q Consensus       508 ~  508 (568)
                      .
T Consensus        63 ~   63 (70)
T 1x5w_A           63 D   63 (70)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.5e-16  Score=113.37  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA  475 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~  475 (568)
                      .+.++|+++++|.|++|++.|.....|.+|+++|++++||+|++|++.|.....                    |..|++
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------L~~H~~   63 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSG--------------------LINHQR   63 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHH--------------------HHHHHH
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHH--------------------HHHHHH
Confidence            356789999999999999999999999999999999999999999999987665                    999999


Q ss_pred             cCCCCCc
Q 045316          476 GGGGSSE  482 (568)
Q Consensus       476 ~H~~~k~  482 (568)
                      +|+++.+
T Consensus        64 ~H~~~~~   70 (72)
T 1x6e_A           64 IHTSGPS   70 (72)
T ss_dssp             HHHSSSS
T ss_pred             hcCCCCC
Confidence            9988653

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.5e-15  Score=116.77  Aligned_cols=68  Identities=16%  Similarity=0.231  Sum_probs=61.2

Q ss_pred             CCCCCCccccccccccCCchhHHHHHH-Hh---ccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccc
Q 045316           89 GVLGLPRTCSECGKQFTSGKALGGHKR-AC---LQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSF  164 (568)
Q Consensus        89 ~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H---~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F  164 (568)
                      ..+++||.|.+||+.|.++..|.+|++ +|   .+++|                                |.|++||++|
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp--------------------------------f~C~~Cgk~F   60 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS--------------------------------YVCVECNFLT   60 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC--------------------------------EEETTTTEEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC--------------------------------cCCCCCCccc
Confidence            357999999999999999999999998 48   44555                                9999999999


Q ss_pred             cCchhHHHH-hhhCC-CCCccccCCC
Q 045316          165 RSVKSLYGH-MRKHP-EREWRGVQPP  188 (568)
Q Consensus       165 ~~~~~L~~H-~~~H~-~~~~~C~~c~  188 (568)
                      .++..|..| +++|+ ++||.|.++.
T Consensus        61 ~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           61 KRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             SSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            999999999 89999 8999999864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.8e-15  Score=111.63  Aligned_cols=62  Identities=29%  Similarity=0.499  Sum_probs=57.0

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL  170 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L  170 (568)
                      ++++|.|++|++.|.+...|.+|+++|++++|                                |.|++|++.|.+...|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~~~L   62 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP--------------------------------YKCDECGKAFIQRSHL   62 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS--------------------------------EECSSSCCEESSHHHH
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcC--------------------------------eeCCCCCCccCCHHHH
Confidence            67899999999999999999999999988877                                9999999999999999


Q ss_pred             HHHhhhCC-CCCccc
Q 045316          171 YGHMRKHP-EREWRG  184 (568)
Q Consensus       171 ~~H~~~H~-~~~~~C  184 (568)
                      .+|+++|+ ++||+|
T Consensus        63 ~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           63 IGHHRVHTGSGPSSG   77 (77)
T ss_dssp             HHHGGGSCCCCCCCC
T ss_pred             HHHHHHhCCCCCCCC
Confidence            99999998 788887

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.7e-16  Score=112.64  Aligned_cols=65  Identities=18%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      .|+++++|.|++|++.|.+...|.+|+++|++++||+|++|++.|.....                    |..|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~--------------------L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSN--------------------LSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHH--------------------HHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHH--------------------HHHHHHHHhC
Confidence            46788999999999999999999999999999999999999999987765                    9999999999


Q ss_pred             CCcee
Q 045316          480 SSEHK  484 (568)
Q Consensus       480 ~k~f~  484 (568)
                      ++|..
T Consensus        63 ~~p~p   67 (70)
T 1x5w_A           63 DMSGP   67 (70)
T ss_dssp             SSCCS
T ss_pred             CCCCC
Confidence            98753

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=5.9e-16  Score=115.71  Aligned_cols=66  Identities=11%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             cCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC---CCceeCCccccccCccccccccccc
Q 045316          428 SHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG---SSEHKCNICNKIFPTGQALGGHKRC  504 (568)
Q Consensus       428 ~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~---~k~f~C~~C~k~F~~~~~L~~H~r~  504 (568)
                      +|++++||+|++|++.|.....                    |..|+++|++   +++|.|.+|++.|.+...|.+|++.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKAS--------------------LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHH--------------------HHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCeECCCCCCeeCCHHH--------------------HHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            4889999999999988877665                    9999999996   8999999999999999999999966


Q ss_pred             CcCCCCCCC
Q 045316          505 HWTGPAEAL  513 (568)
Q Consensus       505 H~~~~~~~~  513 (568)
                      ++.+..+..
T Consensus        61 ~H~~~~~~~   69 (78)
T 2d9h_A           61 SHPALLLAP   69 (78)
T ss_dssp             TSTTTSSCC
T ss_pred             hCCCCCCCc
Confidence            657766544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.1e-15  Score=116.80  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=59.1

Q ss_pred             HHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCC
Q 045316           75 LLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINN  154 (568)
Q Consensus        75 L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~  154 (568)
                      |.+|+++|.       ++++|.|.+|++.|.+...|.+|+++|++...                           .+++ 
T Consensus         3 ~~~H~~~H~-------~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~---------------------------~~~~-   47 (86)
T 1x6h_A            3 SGSSGRTHT-------GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF---------------------------VPAA-   47 (86)
T ss_dssp             TTCCSTTCC-------CCCCEECSSSSCEESSHHHHHHHHHHTTCSSC---------------------------CCCC-
T ss_pred             cccccceec-------CCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC---------------------------CCcc-
Confidence            445677666       67888888888888888888888887665410                           0112 


Q ss_pred             cccccccccccCchhHHHHhhhCC-CCCccccCCCch
Q 045316          155 HICYVCHQSFRSVKSLYGHMRKHP-EREWRGVQPPKH  190 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~H~-~~~~~C~~c~~~  190 (568)
                      |.|++|++.|.+...|..|+++|+ ++++.|..|+.+
T Consensus        48 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             eECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            888888888888888888888877 678888777643

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=3.7e-15  Score=113.53  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             hhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccc--cccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhc
Q 045316           63 EADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSE--CGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVA  140 (568)
Q Consensus        63 ~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~  140 (568)
                      +.|++.|.....|..|++.|.       ++++|.|++  |++.|.+...|.+|+++|++                     
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~-------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---------------------   58 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHT-------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---------------------   58 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH-------TTCCEECCSTTCCCEESSHHHHHHHHHHHHS---------------------
T ss_pred             CCCCcccCCHHHHHHHHHHhC-------CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---------------------
Confidence            666666666666666666665       456666666  66666666666666666654                     


Q ss_pred             cchhhhhhcCCcCCccccc---ccccccCchhHHHHhhhCC
Q 045316          141 VKPEEAGEEGNINNHICYV---CHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       141 l~~H~~~h~~~~~~~~C~~---C~k~F~~~~~L~~H~~~H~  178 (568)
                                    |.|++   |++.|.+...|..|+++|+
T Consensus        59 --------------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           59 --------------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             --------------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             --------------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence                          78888   9999999999999999874

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.54  E-value=1.3e-16  Score=132.46  Aligned_cols=82  Identities=10%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             CCcccccccccccC------ChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcC
Q 045316          404 AQTYSCLICNKSFD------KHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGG  477 (568)
Q Consensus       404 ~k~~~C~~C~k~F~------~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H  477 (568)
                      .+.|.|++|++.|.      ....|..|+ .|++++||.|++||+.|.....                    |..|+++|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~--------------------l~~H~~~H   97 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVS--------------------LKQHIRYT   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHH--------------------HHHHHHHT
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhH--------------------HHHHHHHC
Confidence            35688999888776      666777777 6999999999999999987665                    99999999


Q ss_pred             CCCCceeCCccccccCcccccccccccCcCC
Q 045316          478 GGSSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       478 ~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                        ++||.|.+|++.|.+...|.+|+++|++.
T Consensus        98 --~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 --EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             --CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             --CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence              89999999999999999999999999543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=3e-15  Score=111.47  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=62.3

Q ss_pred             CCcccccccCCCCcccccccccccCChhhhhhhhh-cCCCC-CCccccccchhhhccCchhhhhhhhhcccccccchHHH
Q 045316          393 ALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVA-SHNKN-KNVKESSSASAAAEDSKGEDKLAAAASDEETGESSREL  470 (568)
Q Consensus       393 ~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L  470 (568)
                      .+..|+++|+++++|.|++|++.|.....|.+|++ .|.++ ++|+|++|++.|.....                    |
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~--------------------L   61 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD--------------------L   61 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHH--------------------H
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHH--------------------H
Confidence            47889999999999999999999999999999997 78875 89999999999987765                    9


Q ss_pred             HHHHhc-CCCCCce
Q 045316          471 AAAAAG-GGGSSEH  483 (568)
Q Consensus       471 ~~H~~~-H~~~k~f  483 (568)
                      ..|+++ |.++.|.
T Consensus        62 ~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           62 GVHLRKQHSYSGPS   75 (77)
T ss_dssp             HHHHHHTSCCSCCC
T ss_pred             HHHHHHhCCCCCCC
Confidence            999986 5555553

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=9.1e-15  Score=107.89  Aligned_cols=61  Identities=25%  Similarity=0.457  Sum_probs=52.2

Q ss_pred             CCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchh
Q 045316           90 VLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKS  169 (568)
Q Consensus        90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~  169 (568)
                      .++++|.|.+|++.|.+...|.+|+++|+++++                                |+|++|++.|.+...
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~--------------------------------~~C~~C~k~f~~~~~   60 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP--------------------------------YRCNICGAQFNRPAN   60 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS--------------------------------EECTTTCCEESCHHH
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC--------------------------------EECCCCCchhCCHHH
Confidence            467889999999999999999999998888777                                888899999999999


Q ss_pred             HHHHhhhCC-CCCc
Q 045316          170 LYGHMRKHP-EREW  182 (568)
Q Consensus       170 L~~H~~~H~-~~~~  182 (568)
                      |.+|+++|+ ++||
T Consensus        61 L~~H~~~H~~~kp~   74 (74)
T 2lce_A           61 LKTHTRIHSGEKPY   74 (74)
T ss_dssp             HHHHHHHHCCSCCC
T ss_pred             HHHHHHhcCCCCCC
Confidence            999988888 5665

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.5e-15  Score=109.98  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=65.4

Q ss_pred             cccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHhhhhhHhhhcccc
Q 045316          299 QRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKKNKRRRLNE  378 (568)
Q Consensus       299 ~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (568)
                      +...|..|+++|.++++|.|..|++.|.....                                                
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~------------------------------------------------   33 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST------------------------------------------------   33 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCC------------------------------------------------
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHH------------------------------------------------
Confidence            45789999999999999999999999998877                                                


Q ss_pred             ccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          379 LDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       379 ~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                                     |..       +++|.|++||+.|.+...|.+|+++|++++||.|++|
T Consensus        34 ---------------l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           34 ---------------LSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             ---------------CCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             ---------------hCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence                           222       4689999999999999999999999999999999887

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.2e-15  Score=109.91  Aligned_cols=62  Identities=10%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             hhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhc-C-CCCCceeCCccccccCcccccccccc
Q 045316          426 VASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAG-G-GGSSEHKCNICNKIFPTGQALGGHKR  503 (568)
Q Consensus       426 ~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~-H-~~~k~f~C~~C~k~F~~~~~L~~H~r  503 (568)
                      +++|++++||.|++|++.|.....                    |..|+++ | ++++||.|++|++.|.+...|.+|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~--------------------l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISN--------------------FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHH--------------------HHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHH--------------------HHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHH
Confidence            467888999999999888876665                    9999998 8 69999999999999999999999999


Q ss_pred             cCcC
Q 045316          504 CHWT  507 (568)
Q Consensus       504 ~H~~  507 (568)
                      +|++
T Consensus        62 ~~H~   65 (66)
T 2drp_A           62 IIHK   65 (66)
T ss_dssp             HHTC
T ss_pred             HHcC
Confidence            9854

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.48  E-value=1e-14  Score=101.42  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      ||.|++||+.|.+...|..|+++|++++||.|++|++.|...+.                    |..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN--------------------LTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHH--------------------HHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHH--------------------HHHHHHHhcccC
Confidence            59999999999999999999999999999999999999987665                    999999999876

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=2.6e-14  Score=99.39  Aligned_cols=55  Identities=31%  Similarity=0.431  Sum_probs=48.9

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY  171 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~  171 (568)
                      +++|.|.+|++.|.+...|.+|+++|++++|                                |.|++|++.|.+...|.
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~~~l~   49 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKP--------------------------------YKCEFCEYAAAQKTSLR   49 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCC--------------------------------EECSSSSCEESSHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCC--------------------------------cCCCCCcchhCCHHHHH
Confidence            6899999999999999999999999998887                                99999999999999999


Q ss_pred             HHhhhCC
Q 045316          172 GHMRKHP  178 (568)
Q Consensus       172 ~H~~~H~  178 (568)
                      .|+++|+
T Consensus        50 ~H~~~hh   56 (57)
T 3uk3_C           50 YHLERHH   56 (57)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=6e-15  Score=102.68  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             CCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      ++++|.|++||+.|.+...|..|+++|++++||.|++|++.|.....                    |..|+++|.+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTS--------------------LRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHH--------------------HHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHH--------------------HHHHHHHhcC
Confidence            35789999999999999999999999999999999999999987665                    8899888753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=5.4e-15  Score=122.55  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             chhhHhHhhc------chHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchh
Q 045316           61 AAEADDRQFM------EEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRL  134 (568)
Q Consensus        61 ~C~~C~k~f~------~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~  134 (568)
                      .|+.|.+.|.      ....|..|+ .|+       ++++|.|++||+.|.+...|.+|+++|  ++|            
T Consensus        43 ~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~------------  100 (129)
T 2wbt_A           43 IRAIVKTLIHNPQLLDESSYLYRLL-ASK-------AISQFVCPLCLMPFSSSVSLKQHIRYT--EHT------------  100 (129)
T ss_dssp             HHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------HHCSEECTTTCCEESSHHHHHHHHHHT--CCC------------
T ss_pred             cchhhhcccCCCcccCCHHHHHHHH-HhC-------CCCCeECCCCCcccCCHhHHHHHHHHC--CCC------------
Confidence            4566666655      445555555 455       467777777777777777777777777  555            


Q ss_pred             hhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhhCCC
Q 045316          135 IKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPE  179 (568)
Q Consensus       135 f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~  179 (568)
                                          |.|++|++.|.+...|.+|+++|++
T Consensus       101 --------------------~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A          101 --------------------KVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             --------------------CBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             --------------------CCCCCCCcccCCHHHHHHHHHHHCC
Confidence                                9999999999999999999999873

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.5e-14  Score=108.05  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=60.4

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCC---CCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHH-h
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNK---NKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAA-A  475 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~---~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~-~  475 (568)
                      .|+++++|.|++|++.|.....|.+|+++|++   +++|.|++|++.|.....                    |..|+ +
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~   60 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDS--------------------VAAHRSK   60 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHH--------------------HHHHHHH
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHH--------------------HHHHHHH
Confidence            37889999999999999999999999999996   899999999999987665                    99998 7


Q ss_pred             cCCCCCceeCCc
Q 045316          476 GGGGSSEHKCNI  487 (568)
Q Consensus       476 ~H~~~k~f~C~~  487 (568)
                      .|.++++.....
T Consensus        61 ~H~~~~~~~~~~   72 (78)
T 2d9h_A           61 SHPALLLAPQES   72 (78)
T ss_dssp             TSTTTSSCCSSS
T ss_pred             hCCCCCCCcccc
Confidence            899988876543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=8.7e-15  Score=105.32  Aligned_cols=62  Identities=13%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             ccccCCCCcccccccccccCChhhhhhhhhc-C-CCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316          398 PVVMSTAQTYSCLICNKSFDKHQALGGHVAS-H-NKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA  475 (568)
Q Consensus       398 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H-~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~  475 (568)
                      +++|+++++|.|++||+.|.+...|.+|+++ | .+++||.|++|++.|...+.                    |..|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~   61 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN--------------------MTAHVK   61 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHH--------------------HHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHH--------------------HHHHHH
Confidence            3568899999999999999999999999998 8 69999999999999987665                    999998


Q ss_pred             cCCC
Q 045316          476 GGGG  479 (568)
Q Consensus       476 ~H~~  479 (568)
                      +|.+
T Consensus        62 ~~H~   65 (66)
T 2drp_A           62 IIHK   65 (66)
T ss_dssp             HHTC
T ss_pred             HHcC
Confidence            8765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=9.6e-15  Score=107.49  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=25.2

Q ss_pred             HHHHHhcCCCCCceeCCccccccCcccccccccccC
Q 045316          470 LAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       470 L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      |..|+++|++++||.|.+|++.|.+...|.+|+++|
T Consensus        37 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             HHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            555555555556777777777777777777777777

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=3.5e-14  Score=99.87  Aligned_cols=56  Identities=21%  Similarity=0.378  Sum_probs=51.2

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHH-hcCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAA-AGGGGS  480 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~-~~H~~~  480 (568)
                      ++|.|++|++.|.+...|.+|+++|++++||.|++|++.|.....                    |..|+ ++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~--------------------l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDL--------------------LIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHH--------------------HHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHH--------------------HHHHHHHHcCCc
Confidence            479999999999999999999999999999999999999987665                    99996 789875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=9.6e-14  Score=91.56  Aligned_cols=45  Identities=24%  Similarity=0.363  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.42  E-value=1.2e-13  Score=95.94  Aligned_cols=53  Identities=26%  Similarity=0.463  Sum_probs=47.2

Q ss_pred             CccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGH  173 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H  173 (568)
                      ||.|++|++.|.+...|.+|+++|++++|                                |.|++|++.|.+...|..|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~~~l~~H   48 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP--------------------------------YHCTYCNFSFKTKGNLTKH   48 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC--------------------------------EECSSSSCEESSHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC--------------------------------ccCCCCCchhcCHHHHHHH
Confidence            68899999999999999999998888777                                8999999999999999999


Q ss_pred             hhhCC
Q 045316          174 MRKHP  178 (568)
Q Consensus       174 ~~~H~  178 (568)
                      +++|.
T Consensus        49 ~~~h~   53 (57)
T 1bbo_A           49 MKSKA   53 (57)
T ss_dssp             HHSSS
T ss_pred             HHHhc
Confidence            98887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.41  E-value=9.8e-14  Score=91.55  Aligned_cols=45  Identities=27%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=91.38  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|..++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999999999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=91.44  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.3e-13  Score=91.02  Aligned_cols=45  Identities=22%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1e-13  Score=91.39  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.2e-13  Score=91.12  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=91.25  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1e-13  Score=91.47  Aligned_cols=45  Identities=27%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.2e-13  Score=91.17  Aligned_cols=45  Identities=31%  Similarity=0.426  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=91.24  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.3e-13  Score=90.97  Aligned_cols=45  Identities=27%  Similarity=0.375  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=91.37  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.5e-13  Score=90.60  Aligned_cols=45  Identities=24%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999999999999999999999999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.5e-13  Score=90.56  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.1e-13  Score=91.28  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.40  E-value=9.6e-14  Score=91.54  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      +|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.5e-13  Score=90.69  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.40  E-value=1.1e-13  Score=91.19  Aligned_cols=45  Identities=24%  Similarity=0.397  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.40  E-value=1.1e-13  Score=91.38  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.3e-13  Score=90.95  Aligned_cols=45  Identities=22%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.6e-13  Score=90.47  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.4e-13  Score=90.73  Aligned_cols=45  Identities=27%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-13  Score=90.76  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.5e-13  Score=90.63  Aligned_cols=45  Identities=27%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=7.6e-14  Score=108.66  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             CcccccccccccCChhhhhhhhhc-CCCCCC--------ccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316          405 QTYSCLICNKSFDKHQALGGHVAS-HNKNKN--------VKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA  475 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~--------~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~  475 (568)
                      ..|.|++|++.|.....|.+|+++ |+++++        |.|++|++.|.....                    |..|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~--------------------L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK--------------------LVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHH--------------------HHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHH--------------------HHHHHH
Confidence            458899999999999999999998 999988        999999999987665                    999999


Q ss_pred             cCCCCCceeCC
Q 045316          476 GGGGSSEHKCN  486 (568)
Q Consensus       476 ~H~~~k~f~C~  486 (568)
                      +|++++||+|.
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            99999999996

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.1e-13  Score=91.34  Aligned_cols=45  Identities=24%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.1e-13  Score=91.38  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.6e-13  Score=90.52  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.1e-13  Score=91.32  Aligned_cols=45  Identities=27%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.38  E-value=1.8e-13  Score=90.32  Aligned_cols=45  Identities=27%  Similarity=0.325  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.38  E-value=3.6e-14  Score=100.15  Aligned_cols=58  Identities=9%  Similarity=0.086  Sum_probs=39.6

Q ss_pred             hhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCcccccccc
Q 045316          422 LGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGH  501 (568)
Q Consensus       422 L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H  501 (568)
                      |..|+++|++++||.|++||+.|.....                    |.   ++|++++||+|.+||+.|....++..+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~--------------------l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEA--------------------NQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHH--------------------HH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHH--------------------hH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            5567777777777777777666654322                    33   577777788888888888877777655


Q ss_pred             c
Q 045316          502 K  502 (568)
Q Consensus       502 ~  502 (568)
                      .
T Consensus        59 ~   59 (62)
T 1vd4_A           59 K   59 (62)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.6e-13  Score=90.53  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-13  Score=90.29  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=42.2

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      |+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.5e-13  Score=90.59  Aligned_cols=45  Identities=24%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      +|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.8e-13  Score=90.21  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=43.0

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      +|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=9.5e-14  Score=91.56  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=43.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            688999999999999999999999999999999999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=1.4e-13  Score=90.80  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-13  Score=90.10  Aligned_cols=45  Identities=27%  Similarity=0.339  Sum_probs=43.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=90.01  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=43.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-13  Score=91.37  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-13  Score=91.30  Aligned_cols=45  Identities=24%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.8e-13  Score=90.23  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3.2e-13  Score=94.89  Aligned_cols=55  Identities=22%  Similarity=0.421  Sum_probs=49.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG  172 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~  172 (568)
                      ++|.|++|++.|.+...|.+|+++|++++|                                |.|++|++.|.+...|..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~~~l~~   48 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP--------------------------------YPCGLCNRAFTRRDLLIR   48 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS--------------------------------EECTTTCCEESSHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC--------------------------------ccCCCCCCccCCHHHHHH
Confidence            579999999999999999999999988877                                999999999999999999


Q ss_pred             Hh-hhCCC
Q 045316          173 HM-RKHPE  179 (568)
Q Consensus       173 H~-~~H~~  179 (568)
                      |+ ++|.+
T Consensus        49 H~~~~H~~   56 (60)
T 2adr_A           49 HAQKIHSG   56 (60)
T ss_dssp             HHTTTSCC
T ss_pred             HHHHHcCC
Confidence            97 67863

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-13  Score=91.25  Aligned_cols=45  Identities=24%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|..++.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.5e-13  Score=90.59  Aligned_cols=45  Identities=27%  Similarity=0.421  Sum_probs=43.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=90.43  Aligned_cols=45  Identities=20%  Similarity=0.367  Sum_probs=43.0

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.2e-13  Score=88.96  Aligned_cols=45  Identities=24%  Similarity=0.356  Sum_probs=43.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhh-cCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVA-SHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.....|.+|++ +|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            58899999999999999999999999999999 9999999999887

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.9e-13  Score=100.49  Aligned_cols=57  Identities=25%  Similarity=0.518  Sum_probs=52.8

Q ss_pred             CCCCCcccc--ccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCc
Q 045316           90 VLGLPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSV  167 (568)
Q Consensus        90 ~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~  167 (568)
                      .++++|.|+  .|++.|.+...|.+|+++|.++++                                |.|++|++.|.+.
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~--------------------------------~~C~~C~~~f~~~   62 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP--------------------------------FQCRICMRNFSRS   62 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC--------------------------------EECTTTCCEESCH
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC--------------------------------eECCCCCchhCCH
Confidence            478999997  599999999999999999998887                                9999999999999


Q ss_pred             hhHHHHhhhCC
Q 045316          168 KSLYGHMRKHP  178 (568)
Q Consensus       168 ~~L~~H~~~H~  178 (568)
                      ..|.+|+++|+
T Consensus        63 ~~l~~H~~~Ht   73 (73)
T 1f2i_G           63 DHLTTHIRTHT   73 (73)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-13  Score=89.70  Aligned_cols=45  Identities=24%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578899999999999999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.1e-13  Score=89.86  Aligned_cols=45  Identities=16%  Similarity=0.034  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSH--------------------LARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHH--------------------HHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHH--------------------HHHHhhhcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-13  Score=90.10  Aligned_cols=45  Identities=13%  Similarity=-0.063  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|...+.                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASS--------------------LRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHH--------------------HHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCcCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-13  Score=89.78  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=43.0

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.7e-13  Score=97.25  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc-ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES-SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG  479 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~-~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~  479 (568)
                      ..++++|.|++||+.|. ...|..|+++ ++++||+|+ +||+.|...+.                    |..|+++|..
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~--------------------L~~H~~~hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVARED--------------------LPGHLKDSCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTT--------------------HHHHHHTTSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHH--------------------HHHHHHhhcc
Confidence            34678999999999999 9999999999 999999999 99999998887                    9999999987


Q ss_pred             CCc
Q 045316          480 SSE  482 (568)
Q Consensus       480 ~k~  482 (568)
                      .+|
T Consensus        63 ~~~   65 (66)
T 2eod_A           63 TAL   65 (66)
T ss_dssp             SCC
T ss_pred             cCc
Confidence            765

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.34  E-value=2e-13  Score=90.02  Aligned_cols=45  Identities=16%  Similarity=-0.024  Sum_probs=42.5

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|...+.                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQ--------------------LIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHH--------------------HHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            69999999999999999999987776                    9999999999999999998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.6e-13  Score=89.49  Aligned_cols=45  Identities=11%  Similarity=-0.036  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQ--------------------LIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHH--------------------HHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.6e-13  Score=88.73  Aligned_cols=45  Identities=24%  Similarity=0.386  Sum_probs=42.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-13  Score=89.83  Aligned_cols=46  Identities=15%  Similarity=0.040  Sum_probs=42.8

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            1 GSSGSSGTGEKPYECSICGKSFTKKSQ--------------------LHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSSCCCSEECSSSCCEESSHHH--------------------HHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCCcCcCCCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            369999999999999999999987775                    9999999999999999998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.4e-13  Score=89.68  Aligned_cols=45  Identities=9%  Similarity=-0.076  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPC--------------------LLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHH--------------------HHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.1e-13  Score=89.94  Aligned_cols=46  Identities=13%  Similarity=0.011  Sum_probs=42.8

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            1 GSSGSSGSSTKSHQCHECGRGFTLKSH--------------------LNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSCSEECSSSCCEESSHHH--------------------HHHHHTTTSCSCCSSCCCC
T ss_pred             CCCcCCCCCCCCeECCcCCCccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            369999999999999999999987775                    9999999999999999998

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2e-13  Score=90.02  Aligned_cols=45  Identities=13%  Similarity=-0.004  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQS--------------------LSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHH--------------------HHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHH--------------------HHHHHHHhcCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.3e-13  Score=89.75  Aligned_cols=46  Identities=13%  Similarity=0.008  Sum_probs=42.7

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||+|++|++.|.....                    |..|+++|++++||.|.+|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            1 GSSGSSGTGEKPFKCDICGKSFCGRSR--------------------LNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSSCSCCCSSSCCCCSSHHH--------------------HHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCCcCCCcCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            369999999999999999999987765                    9999999999999999998

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.9e-13  Score=90.07  Aligned_cols=46  Identities=13%  Similarity=-0.068  Sum_probs=42.8

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||.|++|++.|...+.                    |..|+++|++++||.|++|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            1 GSSGSSGTGEKPYICAECGKAFTIRSN--------------------LIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CCSSCTTSSCCSEECSSSCCEESSHHH--------------------HHHHHHHTSCCCCSSCSCC
T ss_pred             CCcccCCCCCcCeECCCCChhhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            369999999999999999999987776                    9999999999999999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3e-13  Score=89.14  Aligned_cols=45  Identities=20%  Similarity=0.054  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSK--------------------LARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHH--------------------HHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.5e-13  Score=89.54  Aligned_cols=45  Identities=16%  Similarity=-0.001  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSH--------------------LARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHH--------------------HHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.3e-13  Score=89.76  Aligned_cols=45  Identities=16%  Similarity=0.023  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH--------------------LANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHH--------------------HHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.6e-13  Score=89.46  Aligned_cols=45  Identities=11%  Similarity=-0.125  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|...+.                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISA--------------------LRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHH--------------------HHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.7e-13  Score=89.36  Aligned_cols=45  Identities=13%  Similarity=-0.018  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|...+.                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSY--------------------LSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHH--------------------HHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHH--------------------HHHHHhhcCCCCCCCCCCC
Confidence            59999999999999999999987765                    9999999999999999998

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.33  E-value=1.9e-13  Score=90.10  Aligned_cols=45  Identities=11%  Similarity=-0.003  Sum_probs=42.5

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|...+.                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTH--------------------LIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHH--------------------HHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987776                    9999999999999999998

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.8e-13  Score=89.33  Aligned_cols=45  Identities=13%  Similarity=-0.046  Sum_probs=42.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++||+.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQ--------------------LIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHH--------------------HHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            69999999999999999999988876                    9999999999999999998

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.32  E-value=3.5e-13  Score=88.82  Aligned_cols=45  Identities=13%  Similarity=-0.021  Sum_probs=42.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSA--------------------LNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTH--------------------HHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            58999999999999999999998886                    9999999999999999998

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.1e-13  Score=88.48  Aligned_cols=45  Identities=11%  Similarity=-0.046  Sum_probs=42.1

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIG--------------------LNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHH--------------------HHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            48999999999999999999987765                    9999999999999999998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.7e-13  Score=89.40  Aligned_cols=46  Identities=13%  Similarity=-0.023  Sum_probs=42.8

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            1 GSSGSSGSGEKPYVCDYCGKAFGLSAE--------------------LVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCSEECSSSCCEESSHHH--------------------HHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCCeECCCCChhhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            369999999999999999999987765                    9999999999999999998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=2.2e-13  Score=89.78  Aligned_cols=45  Identities=13%  Similarity=0.034  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQ--------------------LSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHH--------------------HHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3e-13  Score=89.09  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKST--------------------LSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHH--------------------HHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            58999999999999999999987775                    9999999999999999998

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=8.7e-13  Score=86.88  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|..+..|.+|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.4e-13  Score=88.30  Aligned_cols=45  Identities=16%  Similarity=-0.014  Sum_probs=42.1

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSY--------------------LIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHH--------------------HHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            48999999999999999999987765                    9999999999999999998

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=86.51  Aligned_cols=44  Identities=25%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999963

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.9e-13  Score=87.06  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999963

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9.3e-13  Score=86.74  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=89.22  Aligned_cols=46  Identities=15%  Similarity=0.083  Sum_probs=42.7

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            1 GSSGSSGSGEKPFKCEECGKRFTQNSQ--------------------LHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSTTCCCCCCSEEETTTTEEESSHHH--------------------HHHHGGGGSCCCCSCCCCC
T ss_pred             CCcccCCCCCCCeeCCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            369999999999999999999987765                    9999999999999999998

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1e-12  Score=86.56  Aligned_cols=44  Identities=20%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=9.9e-13  Score=86.60  Aligned_cols=44  Identities=25%  Similarity=0.371  Sum_probs=41.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999963

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=89.25  Aligned_cols=45  Identities=16%  Similarity=0.009  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSR--------------------LRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHH--------------------HHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.6e-13  Score=90.53  Aligned_cols=46  Identities=9%  Similarity=-0.060  Sum_probs=42.9

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      ++|+++|++++||.|++||+.|...+.                    |..|+++|++++||+|.+|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSH--------------------LIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHH--------------------HHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHH--------------------HHHHHHHHcCCCCCCCCCC
Confidence            479999999999999999999987776                    9999999999999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.4e-13  Score=86.97  Aligned_cols=44  Identities=27%  Similarity=0.370  Sum_probs=41.7

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      ++++|+++++|.|++|++.|.+...|.+|+++|++++||+|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.3e-13  Score=89.75  Aligned_cols=45  Identities=9%  Similarity=-0.025  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|...+.                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAH--------------------LIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHH--------------------HHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4e-13  Score=88.54  Aligned_cols=45  Identities=13%  Similarity=0.011  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSN--------------------LFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHH--------------------HHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999986

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=7.8e-13  Score=90.40  Aligned_cols=47  Identities=26%  Similarity=0.463  Sum_probs=43.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhh-cCCCCCCccccccchhhhc
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVA-SHNKNKNVKESSSASAAAE  446 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~~~f~~  446 (568)
                      .|+++++|.|++|++.|.....|.+|++ +|++++||+|++|++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4778899999999999999999999997 9999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=86.37  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=41.5

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999964

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=86.49  Aligned_cols=44  Identities=27%  Similarity=0.324  Sum_probs=41.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999964

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.7e-13  Score=89.36  Aligned_cols=45  Identities=11%  Similarity=-0.007  Sum_probs=42.6

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVH--------------------LTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHH--------------------HHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999988776                    9999999999999999998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.3e-13  Score=89.67  Aligned_cols=45  Identities=13%  Similarity=-0.003  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSH--------------------LTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHH--------------------HHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHH--------------------HHHHHHHHCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=86.49  Aligned_cols=44  Identities=27%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|..+..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58889999999999999999999999999999999999999964

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.5e-13  Score=89.53  Aligned_cols=45  Identities=9%  Similarity=-0.010  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQ--------------------LISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHH--------------------HHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=86.17  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=41.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999963

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=86.22  Aligned_cols=44  Identities=27%  Similarity=0.398  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999963

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2e-13  Score=90.00  Aligned_cols=45  Identities=13%  Similarity=-0.073  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|...+.                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSS--------------------LTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHH--------------------HHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987776                    9999999999999999998

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.9e-13  Score=89.21  Aligned_cols=45  Identities=16%  Similarity=-0.015  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTH--------------------LNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHH--------------------HHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.30  E-value=7.1e-13  Score=87.30  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999964

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=4e-13  Score=88.56  Aligned_cols=45  Identities=11%  Similarity=-0.088  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASC--------------------LLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHH--------------------HHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            69999999999999999999987765                    9999999999999999998

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.7e-13  Score=88.19  Aligned_cols=45  Identities=11%  Similarity=-0.062  Sum_probs=42.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLN--------------------LDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHH--------------------HHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            48999999999999999999987765                    9999999999999999998

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.5e-13  Score=87.21  Aligned_cols=44  Identities=25%  Similarity=0.456  Sum_probs=41.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999964

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=86.48  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-12  Score=100.45  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             CCccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY  171 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~  171 (568)
                      ..|.|.+|++.|.+...|.+|+++ |.++++..+..|.                       . |.|++|++.|.+...|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~-----------------------~-~~C~~C~k~f~~~~~L~   79 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY-----------------------W-EECPREGKSFKAKYKLV   79 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCC-----------------------C-TTCSSTTCCCSSHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCcccee-----------------------c-cCCCCCCcccCCHHHHH
Confidence            446677777777777777777776 6666554333221                       1 67777777777777777


Q ss_pred             HHhhhCC-CCCcccc
Q 045316          172 GHMRKHP-EREWRGV  185 (568)
Q Consensus       172 ~H~~~H~-~~~~~C~  185 (568)
                      .|+++|+ ++||.|.
T Consensus        80 ~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           80 NHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHTCCCCSSC
T ss_pred             HHHHhcCCCCCCCCC
Confidence            7777776 5677764

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.3e-13  Score=88.39  Aligned_cols=45  Identities=11%  Similarity=-0.076  Sum_probs=42.1

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRD--------------------LYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHH--------------------HHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999998

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.30  E-value=9e-13  Score=87.64  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=40.5

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS  442 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~  442 (568)
                      .|+++++|.|++|++.|.+...|.+|+++|++++||+|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4678899999999999999999999999999999999999985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.3e-13  Score=89.68  Aligned_cols=45  Identities=16%  Similarity=0.037  Sum_probs=42.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH--------------------LARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHH--------------------HHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999988776                    9999999999999999998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.30  E-value=4.8e-13  Score=88.15  Aligned_cols=45  Identities=9%  Similarity=-0.117  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLR--------------------LLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHH--------------------HHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999998

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-13  Score=89.83  Aligned_cols=45  Identities=11%  Similarity=-0.031  Sum_probs=42.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSN--------------------LIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHH--------------------HHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHH--------------------HHHHHHhcCCCCCCCCCCC
Confidence            69999999999999999999987776                    9999999999999999998

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.30  E-value=1.1e-12  Score=84.50  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=40.0

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      |+++|+++++|.|++||+.|.+++.|.+|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            678899999999999999999999999999999999999994

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=83.86  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=40.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      .|+++|+++++|.|++||+.|.....|.+|+++|++++||+|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999999999999998

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=86.14  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|..+..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999963

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.3e-13  Score=87.99  Aligned_cols=44  Identities=11%  Similarity=-0.044  Sum_probs=41.5

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      |+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSY--------------------LLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHH--------------------HHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            7899999999999999999987775                    9999999999999999998

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=8.4e-13  Score=86.93  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999963

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=86.14  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=41.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999953

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.2e-13  Score=87.96  Aligned_cols=45  Identities=11%  Similarity=-0.051  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFN--------------------LDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHH--------------------HHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHH--------------------HHHHHHhhCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999998

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9e-13  Score=86.82  Aligned_cols=44  Identities=27%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=84.64  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=41.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999999994

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.2e-13  Score=87.60  Aligned_cols=45  Identities=11%  Similarity=-0.003  Sum_probs=42.1

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQ--------------------CYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHH--------------------HHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999998

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=96.05  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             ccccccCCCCcccccc--cccccCChhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHH
Q 045316          396 EEPVVMSTAQTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELA  471 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~  471 (568)
                      .....+...++|.|.+  |++.|.....|.+|+++|++++||+|++  |++.|.....                    |.
T Consensus         7 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~--------------------l~   66 (72)
T 2epa_A            7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE--------------------LS   66 (72)
T ss_dssp             CCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHH--------------------HH
T ss_pred             CCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHH--------------------HH
Confidence            3444566778999999  9999999999999999999999999975  9999877665                    88


Q ss_pred             HHHhcC
Q 045316          472 AAAAGG  477 (568)
Q Consensus       472 ~H~~~H  477 (568)
                      .|+++|
T Consensus        67 ~H~~~H   72 (72)
T 2epa_A           67 RHRRTH   72 (72)
T ss_dssp             HHTTTC
T ss_pred             hHhhcC
Confidence            888876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=86.15  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999964

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.4e-13  Score=88.89  Aligned_cols=45  Identities=13%  Similarity=0.014  Sum_probs=42.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSI--------------------LSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHH--------------------HHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            69999999999999999999987775                    9999999999999999998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=9.4e-13  Score=86.24  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=40.9

Q ss_pred             cccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccc
Q 045316          399 VVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSA  441 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  441 (568)
                      ..|+++++|.|++|++.|..+..|.+|+++|+++++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3688999999999999999999999999999999999999986

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=83.38  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      |+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678899999999999999999999999999999999999983

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8e-13  Score=87.04  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .+++|+++++|.|++|++.|.+...|.+|+++|++++||+|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45779999999999999999999999999999999999999887

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.4e-12  Score=84.72  Aligned_cols=43  Identities=26%  Similarity=0.454  Sum_probs=40.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778899999999999999999999999999999999999995

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.7e-13  Score=88.13  Aligned_cols=45  Identities=13%  Similarity=-0.020  Sum_probs=42.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSS--------------------CTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHH--------------------HHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            48999999999999999999987765                    9999999999999999998

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=84.55  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=41.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.++..|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999994

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=86.85  Aligned_cols=45  Identities=11%  Similarity=-0.053  Sum_probs=42.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|++ +|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTS--------------------LIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHH--------------------HHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHH--------------------HHHHhHhhcCCCCCCCCCCC
Confidence            58999999999999999999987776                    999999 9999999999998

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=84.09  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=41.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.....|..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5889999999999999999999999999999999999999994

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2e-12  Score=85.05  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|..+..|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788999999999999999999999999999999999999995

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.3e-13  Score=87.94  Aligned_cols=45  Identities=9%  Similarity=-0.065  Sum_probs=42.1

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVS--------------------LIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHH--------------------HHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999998

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.3e-12  Score=82.92  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      |+++|+++++|.|++||+.|.+.+.|.+|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            77889999999999999999999999999999999999998

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=85.02  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCC-CCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNK-NKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~  439 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++ ++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999 99999963

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=84.39  Aligned_cols=43  Identities=19%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999999994

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=86.44  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999964

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.3e-12  Score=86.06  Aligned_cols=43  Identities=23%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      +|+++|+++++|.|++||+.|..+..|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999995

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.5e-12  Score=84.62  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=41.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.....|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999995

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=85.52  Aligned_cols=43  Identities=23%  Similarity=0.392  Sum_probs=41.4

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999995

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=1.8e-12  Score=88.51  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             hcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCCCCCceeCCccccccCcc
Q 045316          427 ASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGGGSSEHKCNICNKIFPTG  495 (568)
Q Consensus       427 ~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~~~k~f~C~~C~k~F~~~  495 (568)
                      ..|++++||.|++|++.|.....                    |..|++ +|++++||+|.+|++.|.++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDH--------------------LNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHH--------------------HHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHH--------------------HHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            46889999999999999987665                    999997 99999999999999999864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.3e-13  Score=98.25  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=53.4

Q ss_pred             hhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccc
Q 045316          419 HQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQAL  498 (568)
Q Consensus       419 ~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L  498 (568)
                      +..|..|+++|.+++||.|+.|++.|...                     .|..|+ .|.+++||.|..|++.|. ...|
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~~~---------------------~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l   58 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELSIL---------------------KLKEHE-DYCGARTELCGNCGRNVL-VKDL   58 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEECHH---------------------HHHHHH-HHHHHCEEECSSSCCEEE-TTGG
T ss_pred             chHHHhhCcccCCCcccCCcccChHhhHH---------------------HHHHHH-hHcCCCceEcccCCCcCc-HHHH
Confidence            45788888888888888888888877421                     288888 888899999999999887 5999


Q ss_pred             ccccccCc
Q 045316          499 GGHKRCHW  506 (568)
Q Consensus       499 ~~H~r~H~  506 (568)
                      ..|+++|.
T Consensus        59 ~~H~~~c~   66 (75)
T 2d9k_A           59 KTHPEVCG   66 (75)
T ss_dssp             GTHHHHBT
T ss_pred             HHHHHHcc
Confidence            99999993

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.8e-12  Score=83.46  Aligned_cols=43  Identities=14%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|.....|.+|+++|++++||+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999999983

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.1e-13  Score=87.30  Aligned_cols=45  Identities=11%  Similarity=-0.086  Sum_probs=41.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLD--------------------LDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHH--------------------HHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHH--------------------HHHHHHHHcCCCCCCCCCC
Confidence            48999999999999999999987765                    9999999999999999998

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-12  Score=86.45  Aligned_cols=45  Identities=16%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIH--------------------LASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHH--------------------HHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            58999999999999999999987765                    9999999999999999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.24  E-value=3e-12  Score=82.43  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      |+++|+++++|.|++||+.|.+++.|.+|+++|++++||+|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999999999999999999999999998

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.23  E-value=1.5e-12  Score=91.83  Aligned_cols=53  Identities=11%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCc
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK  449 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~  449 (568)
                      |..|+++|+++++|.|++||++|.....|.   ++|++++||+|++||+.|.....
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            678999999999999999999999999887   89999999999999999977654

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=85.38  Aligned_cols=43  Identities=26%  Similarity=0.487  Sum_probs=41.3

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999999995

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.3e-12  Score=84.79  Aligned_cols=44  Identities=14%  Similarity=0.034  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH--------------------LVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHH--------------------HHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHH--------------------HHHHHHhhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999975

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.5e-12  Score=91.32  Aligned_cols=55  Identities=18%  Similarity=0.355  Sum_probs=50.5

Q ss_pred             CCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccc-cccccccCch
Q 045316           90 VLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICY-VCHQSFRSVK  168 (568)
Q Consensus        90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~-~C~k~F~~~~  168 (568)
                      -+.++|.|.+|++.|. ...|..|+++ ++++|                                |.|+ +||+.|..++
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p--------------------------------~~C~~~C~k~f~~~~   51 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP--------------------------------VACPNQCGVGTVARE   51 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE--------------------------------EECTTCCSCCEEETT
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcC--------------------------------ccCCcccCcccccHH
Confidence            3678999999999999 9999999998 88777                                9999 9999999999


Q ss_pred             hHHHHhhhCC
Q 045316          169 SLYGHMRKHP  178 (568)
Q Consensus       169 ~L~~H~~~H~  178 (568)
                      .|..|+++|.
T Consensus        52 ~L~~H~~~hc   61 (66)
T 2eod_A           52 DLPGHLKDSC   61 (66)
T ss_dssp             THHHHHHTTS
T ss_pred             HHHHHHHhhc
Confidence            9999999986

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=83.71  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      .|+++|+++++|.|++||+.|.+...|.+|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            588999999999999999999999999999999999999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.1e-12  Score=83.12  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      |+++|+++++|.|++||++|.+...|.+|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            77899999999999999999999999999999999999998

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.2e-12  Score=84.88  Aligned_cols=44  Identities=18%  Similarity=0.062  Sum_probs=41.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSK--------------------LARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHH--------------------HHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCC
Confidence            69999999999999999999987776                    999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.5e-12  Score=84.62  Aligned_cols=44  Identities=16%  Similarity=0.051  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH--------------------LARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHH--------------------HHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhH--------------------HHHHhHhcCCCCCCCCCC
Confidence            69999999999999999999987775                    999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=84.71  Aligned_cols=44  Identities=16%  Similarity=0.032  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKST--------------------LIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHH--------------------HHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987775                    999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.6e-12  Score=83.28  Aligned_cols=43  Identities=21%  Similarity=0.156  Sum_probs=40.1

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      .+++|+++++|.|++|++.|.++..|.+|+++|++++||+|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999963

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=84.74  Aligned_cols=44  Identities=11%  Similarity=0.032  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSH--------------------LHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHH--------------------HHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHH--------------------HHHHHHhcCCCCCCCCCC
Confidence            69999999999999999999987775                    999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.9e-12  Score=84.28  Aligned_cols=44  Identities=14%  Similarity=-0.005  Sum_probs=40.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSH--------------------LQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHH--------------------HHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCC
Confidence            68999999999999999999987765                    999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.6e-12  Score=82.88  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      +.++|+++++|.|++|++.|.++..|.+|+++|++++||.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            4667999999999999999999999999999999999999963

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=4.2e-12  Score=82.63  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++||+.|.....|.+|+++|++++||+|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4778899999999999999999999999999999999999994

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.21  E-value=1.1e-12  Score=89.61  Aligned_cols=44  Identities=16%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCc
Q 045316          392 GALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNV  435 (568)
Q Consensus       392 ~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~  435 (568)
                      ..|..|+++|+++++|.|++||+.|...+.|.+|+++|+|++||
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            33444555555555555555555555555555555555555444

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.2e-12  Score=84.14  Aligned_cols=44  Identities=9%  Similarity=-0.047  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTN--------------------LIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHH--------------------HHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            59999999999999999999987765                    999999999999999975

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.5e-12  Score=83.51  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             ccccccCCCCccccc--ccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316          396 EEPVVMSTAQTYSCL--ICNKSFDKHQALGGHVASHNKNKNVKESSS  440 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C  440 (568)
                      .|.++|+++++|.|.  +|++.|..+..|.+|+++|++++||+|++|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366789999999998  899999999999999999999999999887

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=84.27  Aligned_cols=44  Identities=16%  Similarity=0.030  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSN--------------------LTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHH--------------------HHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.7e-12  Score=84.52  Aligned_cols=44  Identities=14%  Similarity=0.017  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQ--------------------LHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHH--------------------HHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999975

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.4e-12  Score=84.77  Aligned_cols=43  Identities=19%  Similarity=0.293  Sum_probs=41.2

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      .|+++|+++++|.|++|++.|.....|.+|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999994

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.8e-12  Score=84.39  Aligned_cols=44  Identities=11%  Similarity=-0.034  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSH--------------------LNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHH--------------------HHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHH--------------------HHHHHHhcCCCCCcCCCC
Confidence            69999999999999999999987765                    999999999999999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=90.63  Aligned_cols=56  Identities=27%  Similarity=0.469  Sum_probs=51.0

Q ss_pred             CCCCCccccc--cccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCccccc--cccccc
Q 045316           90 VLGLPRTCSE--CGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYV--CHQSFR  165 (568)
Q Consensus        90 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~k~F~  165 (568)
                      ...++|.|.+  |++.|.....|.+|+++|++++|                                |+|++  |++.|.
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~--------------------------------~~C~~~~C~k~f~   60 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP--------------------------------FSCSWKGCERRFA   60 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS--------------------------------EECCCTTCCCEES
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC--------------------------------ccCCCCCCCcccC
Confidence            3578999998  99999999999999999998887                                99965  999999


Q ss_pred             CchhHHHHhhhC
Q 045316          166 SVKSLYGHMRKH  177 (568)
Q Consensus       166 ~~~~L~~H~~~H  177 (568)
                      +...|.+|+++|
T Consensus        61 ~~~~l~~H~~~H   72 (72)
T 2epa_A           61 RSDELSRHRRTH   72 (72)
T ss_dssp             SHHHHHHHTTTC
T ss_pred             CHHHHHhHhhcC
Confidence            999999999887

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3e-12  Score=84.24  Aligned_cols=44  Identities=16%  Similarity=0.037  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSN--------------------LIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHH--------------------HHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987775                    999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.20  E-value=1.9e-12  Score=85.23  Aligned_cols=44  Identities=14%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQ--------------------LATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHH--------------------HHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.2e-12  Score=84.16  Aligned_cols=44  Identities=14%  Similarity=0.039  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKAN--------------------LTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHH--------------------HHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHH--------------------HHHHHHHcCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=7.4e-12  Score=81.39  Aligned_cols=42  Identities=21%  Similarity=0.223  Sum_probs=40.5

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      .|+++|+++++|.|++|++.|.+.+.|.+|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588999999999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.9e-12  Score=83.62  Aligned_cols=44  Identities=16%  Similarity=0.012  Sum_probs=40.5

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSH--------------------LVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHH--------------------HHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHH--------------------HHHHHHhcCCCCCCCCCC
Confidence            48999999999999999999987765                    999999999999999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-12  Score=84.94  Aligned_cols=44  Identities=20%  Similarity=0.077  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSS--------------------LAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHH--------------------HHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHH--------------------HHHHHHHcCCCCCCCCCC
Confidence            69999999999999999999987776                    999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-12  Score=84.93  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAH--------------------LAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHH--------------------HHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.2e-12  Score=82.66  Aligned_cols=43  Identities=16%  Similarity=0.005  Sum_probs=40.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSY--------------------LIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHH--------------------HHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHH--------------------HHHHhhhcCCCCCCCCC
Confidence            69999999999999999999987765                    99999999999999995

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.19  E-value=3.5e-12  Score=82.06  Aligned_cols=42  Identities=12%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      |+++|++++||+|++|++.|.....                    |..|+++|++++||+|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQ--------------------LISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHH--------------------HHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHH--------------------HHHHHHhcCCCCCCCCC
Confidence            7899999999999999999987765                    99999999999999995

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=6.4e-12  Score=81.20  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=38.5

Q ss_pred             cccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          399 VVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      ++|+++++|.|++|++.|..+..|.+|+++|++++||+|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46889999999999999999999999999999999999964

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.4e-12  Score=83.44  Aligned_cols=44  Identities=14%  Similarity=-0.057  Sum_probs=40.9

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      ++++|++++||+|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSS--------------------LTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHH--------------------HHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            5789999999999999999987765                    9999999999999999998

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.6e-12  Score=82.03  Aligned_cols=42  Identities=17%  Similarity=0.131  Sum_probs=38.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC  485 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C  485 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGS--------------------LIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHH--------------------HHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHH--------------------HHHHHHHhCCCCCCCC
Confidence            58999999999999999999987665                    9999999999999998

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=4.7e-12  Score=82.40  Aligned_cols=43  Identities=12%  Similarity=-0.001  Sum_probs=40.3

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNY--------------------LVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHH--------------------HHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHH--------------------HHHHhHhcCCCCCCCCC
Confidence            69999999999999999999988776                    99999999999999995

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.4e-12  Score=81.19  Aligned_cols=42  Identities=7%  Similarity=0.012  Sum_probs=38.9

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      |+++|++++||.|++|++.|.....                    |..|+++|++++||+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNR--------------------LVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHH--------------------HHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHH--------------------HHHHHHHhCCCCCCCCC
Confidence            7899999999999999999987765                    99999999999999985

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.3e-12  Score=83.50  Aligned_cols=44  Identities=14%  Similarity=0.033  Sum_probs=40.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKST--------------------LSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHH--------------------HHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHH--------------------HHHHHhHhCCCCCCCCCC
Confidence            58999999999999999999987765                    999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=3e-12  Score=84.23  Aligned_cols=44  Identities=11%  Similarity=0.003  Sum_probs=40.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSS--------------------LICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHH--------------------HHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHH--------------------HHHHHHhcCCCCCCCCCC
Confidence            58999999999999999999987765                    999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.5e-12  Score=83.90  Aligned_cols=44  Identities=14%  Similarity=0.004  Sum_probs=40.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSS--------------------LTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHH--------------------HHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHH--------------------HHHHHHHcCCCCCCCCCC
Confidence            68999999999999999999987765                    999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=79.02  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             cccCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          399 VVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      ++|+++++|.|++||+.|.....|.+|+++|++++||+|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            468899999999999999999999999999999999998

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.8e-12  Score=82.35  Aligned_cols=43  Identities=9%  Similarity=0.067  Sum_probs=39.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQ--------------------LVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHH--------------------HHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHH--------------------HHHHHHHcCCCCCCCCC
Confidence            58999999999999999999987765                    99999999999999995

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.7e-12  Score=84.44  Aligned_cols=44  Identities=9%  Similarity=-0.108  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAH--------------------LNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHH--------------------HHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6.1e-12  Score=82.75  Aligned_cols=44  Identities=16%  Similarity=0.019  Sum_probs=40.6

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSS--------------------LTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHH--------------------HHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            69999999999999999999987765                    999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.4e-12  Score=82.53  Aligned_cols=43  Identities=16%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSN--------------------LMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHH--------------------HHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhH--------------------HHHHHHHhCCCCCCCCC
Confidence            69999999999999999999987765                    99999999999999995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=7.1e-12  Score=82.40  Aligned_cols=44  Identities=11%  Similarity=-0.071  Sum_probs=41.0

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCC-CCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGG-SSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~-~k~f~C~~  487 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++ ++||+|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKY--------------------LTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHH--------------------HHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            58999999999999999999988776                    9999999999 99999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6.6e-12  Score=82.55  Aligned_cols=43  Identities=9%  Similarity=-0.041  Sum_probs=39.9

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      .|+++|++++||+|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGH--------------------LNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHH--------------------HHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHH--------------------HHHHHHHhCCCCCCCCC
Confidence            58999999999999999999987765                    99999999999999996

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.9e-12  Score=81.69  Aligned_cols=44  Identities=11%  Similarity=0.006  Sum_probs=40.5

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHAS--------------------LTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHH--------------------HHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            48899999999999999999988776                    999999999999999963

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.8e-12  Score=82.35  Aligned_cols=44  Identities=14%  Similarity=0.060  Sum_probs=40.3

Q ss_pred             hhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          423 GGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       423 ~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      .+|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            1 GSSGSSGHTRKRYECSKCQATFNLRKH--------------------LIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCSCCCCCSSEECTTTCCEESCHHH--------------------HHHHGGGGCCCCCTTCC
T ss_pred             CCcccccCCCCCeECCCCCCccCCHHH--------------------HHHHHHHcCCCCCcCCC
Confidence            369999999999999999999987765                    99999999999999995

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-12  Score=84.08  Aligned_cols=44  Identities=16%  Similarity=0.030  Sum_probs=40.6

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQ--------------------LQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHH--------------------HHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHH--------------------HHHHHHhcCCCCCCCCCC
Confidence            59999999999999999999987765                    999999999999999975

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.1e-12  Score=83.59  Aligned_cols=43  Identities=19%  Similarity=0.074  Sum_probs=40.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSG--------------------LHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHH--------------------HHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhH--------------------HHHHHHHcCCCCCCCCC
Confidence            69999999999999999999987765                    99999999999999997

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.5e-12  Score=80.47  Aligned_cols=41  Identities=12%  Similarity=-0.042  Sum_probs=38.5

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC  485 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C  485 (568)
                      |+++|++++||+|++|++.|...+.                    |..|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQT--------------------LKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHH--------------------HHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHH--------------------HHHHHHhcCCCCCCCC
Confidence            8899999999999999999987765                    9999999999999998

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=1.8e-12  Score=97.89  Aligned_cols=49  Identities=16%  Similarity=0.277  Sum_probs=43.4

Q ss_pred             CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316          394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS  442 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~  442 (568)
                      +..+.++|+++++|.|++|++.|.....|.+|+++|++++||+|..|..
T Consensus        13 ~~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           13 IILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CCCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             eeccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            3445667999999999999999999999999999999999999976643

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=1.2e-11  Score=82.15  Aligned_cols=43  Identities=12%  Similarity=0.014  Sum_probs=39.7

Q ss_pred             cCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcccc
Q 045316          428 SHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNK  490 (568)
Q Consensus       428 ~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k  490 (568)
                      .|.++++|.|++|++.|.....                    |..|+++|++++||+|.+|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYH--------------------LNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHH--------------------HHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHH--------------------HHHHHHhcCCCCCccCCCCCC
Confidence            5789999999999999987765                    999999999999999999996

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.9e-12  Score=83.66  Aligned_cols=44  Identities=11%  Similarity=-0.012  Sum_probs=40.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      +|+++|++++||+|++|++.|.....                    |..|+++|++++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSH--------------------LAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHH--------------------HHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            68999999999999999999987765                    999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5.4e-12  Score=82.97  Aligned_cols=44  Identities=9%  Similarity=-0.077  Sum_probs=40.7

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .+++|++++||.|++|++.|.....                    |..|+++|++++||+|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYR--------------------LTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHH--------------------HHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHH--------------------HHHHHHHcCCCCCCCCCCC
Confidence            4688999999999999999987776                    9999999999999999998

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.12  E-value=1.1e-11  Score=79.69  Aligned_cols=41  Identities=10%  Similarity=0.001  Sum_probs=38.4

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC  485 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C  485 (568)
                      |+++|++++||.|++|++.|.....                    |..|+++|++++||+|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~--------------------l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGS--------------------LAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHH--------------------HHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHH--------------------HHHHhhhcCCCCCCCC
Confidence            7899999999999999999987765                    9999999999999998

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.8e-12  Score=81.94  Aligned_cols=43  Identities=12%  Similarity=-0.044  Sum_probs=40.2

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFH--------------------LTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHH--------------------HHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHH--------------------HHHHHHHhCCCCCCCCC
Confidence            69999999999999999999988776                    99999999999999984

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5e-12  Score=83.16  Aligned_cols=43  Identities=7%  Similarity=-0.088  Sum_probs=40.4

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      +|+++|++++||.|++|++.|.....                    |..|+++|++++||+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCS--------------------LFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHH--------------------HHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHH--------------------HHHHHHHhCCCCCCCCC
Confidence            69999999999999999999988776                    99999999999999996

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=1.7e-11  Score=83.60  Aligned_cols=44  Identities=5%  Similarity=-0.093  Sum_probs=35.6

Q ss_pred             ccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhccccc
Q 045316          413 NKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEET  463 (568)
Q Consensus       413 ~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~  463 (568)
                      +|.|.....|..|+++|++++||.|++||+.|.       ..+.|..|++.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~-------~~~~L~~H~~~   46 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIR-------QSRNLRRHLEL   46 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEES-------SHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccC-------CHHHHHHHHHH
Confidence            578999999999999999999999977776655       45566666543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.11  E-value=1.2e-11  Score=80.81  Aligned_cols=43  Identities=7%  Similarity=0.018  Sum_probs=39.7

Q ss_pred             hcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccc
Q 045316          427 ASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICN  489 (568)
Q Consensus       427 ~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~  489 (568)
                      .+|++++||.|++|++.|.....                    |..|+++|+++++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~--------------------l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDR--------------------MSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHH--------------------HHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHH--------------------HHHHHHHccCCCCCCCcCCC
Confidence            47999999999999999987665                    99999999999999999997

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.8e-11  Score=79.53  Aligned_cols=43  Identities=16%  Similarity=0.024  Sum_probs=39.7

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSL--------------------LIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHH--------------------HHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHH--------------------HHHHHhHhcCCCCCCCC
Confidence            69999999999999999999987765                    99999999999999984

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.4e-11  Score=80.68  Aligned_cols=45  Identities=9%  Similarity=-0.013  Sum_probs=41.1

Q ss_pred             hhhhcCCCCCCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcc
Q 045316          424 GHVASHNKNKNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNIC  488 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C  488 (568)
                      .|.++|++++||+|.  +|++.|.....                    |..|+++|++++||+|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDE--------------------LSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHH--------------------HHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHH--------------------HHHHHHHhCCCCCCCCCCC
Confidence            477899999999998  89999987665                    9999999999999999998

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-11  Score=79.68  Aligned_cols=43  Identities=14%  Similarity=0.019  Sum_probs=39.5

Q ss_pred             hhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316          424 GHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN  486 (568)
Q Consensus       424 ~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~  486 (568)
                      .|+++|++++||.|++|++.|.....                    |..|+++|++++||+|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSL--------------------LIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHH--------------------HHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHH--------------------HHHHHHHHCCCCCCCCC
Confidence            48899999999999999999987665                    99999999999999995

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=9.7e-12  Score=91.01  Aligned_cols=68  Identities=9%  Similarity=0.049  Sum_probs=60.2

Q ss_pred             CCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHH
Q 045316          391 GGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSREL  470 (568)
Q Consensus       391 ~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L  470 (568)
                      ...|..|++.+.+.++|.|.+|++.|. ...|..|+ .|.+++||.|+.|++.|.. ..                    |
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~--------------------l   58 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KD--------------------L   58 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TG--------------------G
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HH--------------------H
Confidence            356899999999999999999999995 99999999 9999999999999998764 33                    8


Q ss_pred             HHHHhcCCCCC
Q 045316          471 AAAAAGGGGSS  481 (568)
Q Consensus       471 ~~H~~~H~~~k  481 (568)
                      ..|+++|++++
T Consensus        59 ~~H~~~c~~~~   69 (75)
T 2d9k_A           59 KTHPEVCGREG   69 (75)
T ss_dssp             GTHHHHBTTBS
T ss_pred             HHHHHHccCCc
Confidence            88998888764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=1.3e-11  Score=93.16  Aligned_cols=57  Identities=7%  Similarity=0.002  Sum_probs=50.2

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccccccccc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRC  504 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~  504 (568)
                      |.++|++++||+|++|++.|.....                    |..|+++|++++||+|..|    .....|..|.++
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~--------------------L~~H~~~Ht~ekp~~C~~~----~~~~~~~~~~~~   71 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAE--------------------LTSHLNIHNEEFQKRAKRQ----ERRKQLLSKQKY   71 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHH--------------------HHHHHHHHHHHHHHHCCCC----SCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHH--------------------HHHHHHHhCCCCCcccchh----hhHHHHHhhhcc
Confidence            3466999999999999999987765                    9999999999999999765    568889999999


Q ss_pred             C
Q 045316          505 H  505 (568)
Q Consensus       505 H  505 (568)
                      |
T Consensus        72 ~   72 (88)
T 1x6f_A           72 A   72 (88)
T ss_dssp             C
T ss_pred             c
Confidence            9

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=78.82  Aligned_cols=43  Identities=9%  Similarity=-0.007  Sum_probs=39.2

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      |.++|++++||+|++|++.|.....                    |..|+++|++++||.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGN--------------------LVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHH--------------------HHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            5788999999999999999987765                    999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.6e-11  Score=79.61  Aligned_cols=43  Identities=9%  Similarity=-0.034  Sum_probs=39.2

Q ss_pred             hhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          425 HVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       425 H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      ++++|++++||+|++|++.|.....                    |..|+++|++++||+|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~--------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASN--------------------FIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHH--------------------HHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHH--------------------HHHHHHHhCCCCCCCCCC
Confidence            5789999999999999999987765                    999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.02  E-value=1.1e-10  Score=73.55  Aligned_cols=37  Identities=30%  Similarity=0.696  Sum_probs=34.5

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      |+++++|.|++||+.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5678999999999999999999999999999999986

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=6.2e-11  Score=76.46  Aligned_cols=41  Identities=7%  Similarity=-0.015  Sum_probs=37.5

Q ss_pred             hcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316          427 ASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI  487 (568)
Q Consensus       427 ~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~  487 (568)
                      ++|++++||+|++|++.|.....                    |..|+++|++++||+|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEAS--------------------LKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHH--------------------HHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHH--------------------HHHHHHhhCCCCCccCCC
Confidence            57999999999999999987765                    999999999999999975

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=1.5e-10  Score=79.62  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=35.8

Q ss_pred             ccCCCCcccccc--cccccCChhhhhhhh-hcCCCCCCcccc
Q 045316          400 VMSTAQTYSCLI--CNKSFDKHQALGGHV-ASHNKNKNVKES  438 (568)
Q Consensus       400 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~-~~H~~~k~~~C~  438 (568)
                      ..+++|||+|.+  |||+|...++|.+|+ ++|+++|||.|.
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            478999999976  999999999999998 689999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-10  Score=74.30  Aligned_cols=39  Identities=8%  Similarity=0.028  Sum_probs=36.1

Q ss_pred             hcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316          427 ASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC  485 (568)
Q Consensus       427 ~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C  485 (568)
                      ++|++++||+|++|++.|.....                    |..|+++|++++||+|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~--------------------L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGS--------------------LTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHH--------------------HHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHH--------------------HHHHHHHhCCCCCcCC
Confidence            57999999999999999987765                    9999999999999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1e-10  Score=75.01  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             hhhhhcCCcCCcccccccccccCchhHHHHhhhCC-CCCccc
Q 045316          144 EEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHP-EREWRG  184 (568)
Q Consensus       144 H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-~~~~~C  184 (568)
                      |+++|+++++ |.|++|++.|.+...|..|+++|+ ++||.|
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCS-EECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCC-EeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            6788899988 999999999999999999999998 789987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.94  E-value=1.5e-10  Score=71.92  Aligned_cols=34  Identities=24%  Similarity=0.552  Sum_probs=32.6

Q ss_pred             HHhcCCCCCceeCCccccccCcccccccccccCc
Q 045316          473 AAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       473 H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |+++|++++||+|.+|++.|.+...|.+|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            7889999999999999999999999999999994

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.5e-10  Score=70.84  Aligned_cols=37  Identities=24%  Similarity=0.575  Sum_probs=34.5

Q ss_pred             ccccCCCCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316          398 PVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKN  434 (568)
Q Consensus       398 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  434 (568)
                      +++|+++++|.|++||+.|.....|.+|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3578999999999999999999999999999999886

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.90  E-value=7.5e-10  Score=68.61  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCCC
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      |+++|+++++|.|++||+.|..+..|.+|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            788999999999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.88  E-value=5.2e-10  Score=67.25  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      ++|.|++||+.|...+.|..|+++|+|++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            479999999999999999999999999999963

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.88  E-value=6.6e-10  Score=67.89  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKN  434 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  434 (568)
                      +|+++++|.|++||+.|.+++.|.+|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47889999999999999999999999999999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.88  E-value=7.4e-10  Score=67.66  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=32.8

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKN  434 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  434 (568)
                      +|+++++|.|.+||+.|...+.|.+|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47889999999999999999999999999999875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3.5e-10  Score=70.13  Aligned_cols=33  Identities=18%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             HhcCCCCCceeCCccccccCcccccccccccCc
Q 045316          474 AAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |++|++++||.|.+|++.|.+...|.+|+++|+
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            468999999999999999999999999999994

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=7.1e-10  Score=68.29  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.5

Q ss_pred             cCCCCCceeCCc--cccccCcccccccccccCcC
Q 045316          476 GGGGSSEHKCNI--CNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       476 ~H~~~k~f~C~~--C~k~F~~~~~L~~H~r~H~~  507 (568)
                      .+++++||+|.+  |+|+|.+++.|++||++|++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            578999999987  99999999999999999944

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.1e-09  Score=67.43  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             ccCCCCcccccc--cccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLI--CNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .+++++||+|++  |+|+|..++.|++|+++|+++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367899999987  9999999999999999999863

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.81  E-value=6.2e-10  Score=66.38  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCc
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNV  435 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~  435 (568)
                      ++|.|++||+.|...+.|.+|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4799999999999999999999999999997

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.81  E-value=8.7e-10  Score=72.80  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             cCCCCCceeCCccccccCcccccccccc-cCcCC
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKR-CHWTG  508 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r-~H~~~  508 (568)
                      +|++++||.|.+|++.|.+..+|.+|++ +|.+.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            5899999999999999999999999999 99443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.79  E-value=1.6e-09  Score=66.16  Aligned_cols=31  Identities=29%  Similarity=0.542  Sum_probs=29.5

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +|++++||+|.+|++.|.+...|.+|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            5899999999999999999999999999994

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.77  E-value=1.8e-09  Score=65.92  Aligned_cols=31  Identities=35%  Similarity=0.518  Sum_probs=29.5

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +|++++||.|.+|++.|.+...|.+|+++|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            5899999999999999999999999999994

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=2.9e-09  Score=65.39  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=31.8

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|.|.+|++.|...+.|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999999875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=9.5e-10  Score=68.10  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             HhcCCCCCceeCCccccccCcccccccc-cccCc
Q 045316          474 AAGGGGSSEHKCNICNKIFPTGQALGGH-KRCHW  506 (568)
Q Consensus       474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H-~r~H~  506 (568)
                      |++|++++||+|.+|++.|.++..|.+| +++|+
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            4689999999999999999999999999 99994

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.8e-09  Score=64.87  Aligned_cols=34  Identities=21%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|+|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            5788999999999999999999999999999875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=2.4e-09  Score=66.68  Aligned_cols=36  Identities=22%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             cCCCCccccc--ccccccCChhhhhhhhhcCCCCCCcc
Q 045316          401 MSTAQTYSCL--ICNKSFDKHQALGGHVASHNKNKNVK  436 (568)
Q Consensus       401 h~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k~~~  436 (568)
                      |+++++|.|.  .||+.|.+.+.|.+|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5688999999  59999999999999999999999983

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.7e-09  Score=64.92  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5788999999999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=2.6e-09  Score=66.10  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             cccCCCCcccccccccccCCh-hhhhhhhhcCCCCC
Q 045316          399 VVMSTAQTYSCLICNKSFDKH-QALGGHVASHNKNK  433 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k  433 (568)
                      ++|+++++|.|++|++.|... +.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            468899999999999999999 99999999999874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.7e-09  Score=65.35  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             ccccCCCCcccccccccccCChhhhhhh-hhcCCCC
Q 045316          398 PVVMSTAQTYSCLICNKSFDKHQALGGH-VASHNKN  432 (568)
Q Consensus       398 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~  432 (568)
                      +++|++++||+|++||+.|..++.|.+| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3578999999999999999999999999 9999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=5.3e-09  Score=64.21  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|.|++|++.|.++..|.+|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5788899999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.68  E-value=1.1e-08  Score=61.25  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             CCccccccccccCCchhHHHHHHHhccccCCC
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKIKNG  124 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  124 (568)
                      +||.|++||+.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999863

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=4.6e-09  Score=64.48  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             hcCCCCCceeCCccccccCcccccccccccCc
Q 045316          475 AGGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +.|++++||+|.+|++.|.+...|.+|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999994

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=3.3e-09  Score=65.63  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             hcCCCCCceeCCccccccCcc-cccccccccCcC
Q 045316          475 AGGGGSSEHKCNICNKIFPTG-QALGGHKRCHWT  507 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k~F~~~-~~L~~H~r~H~~  507 (568)
                      ++|++++||+|.+|++.|.+. ..|.+|+++|++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            589999999999999999999 999999999943

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=5e-09  Score=64.33  Aligned_cols=32  Identities=22%  Similarity=0.446  Sum_probs=30.2

Q ss_pred             hcCCCCCceeCCccccccCcccccccccccCc
Q 045316          475 AGGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +.|++++||+|.+|++.|.+...|.+|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            37999999999999999999999999999994

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.66  E-value=7.7e-09  Score=68.14  Aligned_cols=35  Identities=29%  Similarity=0.519  Sum_probs=30.2

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhh-cCCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVA-SHNKNKN  434 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~  434 (568)
                      +|+++++|.|.+|||.|.....|.+|++ +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4889999999999999999999999999 9998754

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.65  E-value=5.3e-09  Score=63.22  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS  439 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~  439 (568)
                      +.+++||+|++|||+|.++++|.+|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            56889999999999999999999999       888843

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=7.1e-09  Score=63.61  Aligned_cols=34  Identities=29%  Similarity=0.590  Sum_probs=31.3

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|.|++|++.|.....|.+|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678899999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.64  E-value=1.3e-08  Score=63.73  Aligned_cols=36  Identities=31%  Similarity=0.489  Sum_probs=31.6

Q ss_pred             hcCCcCCcccccccccccCchhHHHHhhhCC-CCCccc
Q 045316          148 EEGNINNHICYVCHQSFRSVKSLYGHMRKHP-EREWRG  184 (568)
Q Consensus       148 h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-~~~~~C  184 (568)
                      |+++++ |.|++||+.|.+.+.|..|+++|+ ++||.+
T Consensus         1 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRS-YTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSS-EECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCc-eECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            456677 999999999999999999999999 788865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=1.9e-08  Score=69.22  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             CCCCCccccc--cccccCCchhHHHHH-HHhccccCCCCc
Q 045316           90 VLGLPRTCSE--CGKQFTSGKALGGHK-RACLQKIKNGTT  126 (568)
Q Consensus        90 ~~~~~~~C~~--C~k~F~~~~~L~~H~-~~H~~~~~~~~~  126 (568)
                      .++|||+|.+  |++.|...++|.+|+ ++|++++||.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            3789999976  999999999999998 689999996543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.63  E-value=7.6e-09  Score=67.88  Aligned_cols=40  Identities=23%  Similarity=0.519  Sum_probs=35.7

Q ss_pred             CcccccccCCCCccccc--ccccccCChhhhhhhhhcCCCCC
Q 045316          394 LKEEPVVMSTAQTYSCL--ICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       394 l~~h~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +..+...|+++++|.|+  .||+.|..++.|.+|+++|+|++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            45566779999999996  69999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=6.5e-09  Score=63.77  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +|++++||+|.+|++.|.....|.+|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            7999999999999999999999999999994

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=3.8e-08  Score=68.86  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCcCCC
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGP  509 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~~  509 (568)
                      .|+++|||+|.+|+|.|.++..|.+|+++|+++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            6889999999999999999999999999996543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.57  E-value=1.1e-08  Score=63.16  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             ccCCCCcccccc--cccccCChhhhhhhhhcCCCCC
Q 045316          400 VMSTAQTYSCLI--CNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       400 ~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .|+++++|.|.+  ||+.|..++.|.+|+++|+|++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478899999995  9999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.2e-08  Score=62.51  Aligned_cols=31  Identities=32%  Similarity=0.635  Sum_probs=29.7

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +|++++||.|.+|++.|.+...|.+|+++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            6899999999999999999999999999994

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.52  E-value=3.3e-08  Score=57.56  Aligned_cols=30  Identities=27%  Similarity=0.633  Sum_probs=27.8

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +++|.|.+||+.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            368999999999999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.51  E-value=2.7e-08  Score=57.48  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=27.1

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999874

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.9e-08  Score=61.64  Aligned_cols=31  Identities=32%  Similarity=0.622  Sum_probs=29.4

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCc
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      .|++++||+|.+|++.|.....|..|+++|+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            6889999999999999999999999999994

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=6.8e-09  Score=68.11  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCCceeCC--ccccccCcccccccccccCcC
Q 045316          470 LAAAAAGGGGSSEHKCN--ICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       470 L~~H~~~H~~~k~f~C~--~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +..|+.+|++++||+|.  .|++.|.+.+.|.+|+++|++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            34456679999999996  799999999999999999943

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.49  E-value=4.7e-08  Score=68.40  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=34.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccc
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSA  441 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~  441 (568)
                      .+.++++|+|.+|+|.|.++..|.+|+++|+++. ..|.+++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            3678899999999999999999999999999975 4454444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=1.5e-08  Score=58.61  Aligned_cols=29  Identities=31%  Similarity=0.699  Sum_probs=27.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|++||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47999999999999999999999999874

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.49  E-value=3.6e-08  Score=56.88  Aligned_cols=29  Identities=28%  Similarity=0.759  Sum_probs=27.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.48  E-value=5.7e-08  Score=57.09  Aligned_cols=29  Identities=28%  Similarity=0.653  Sum_probs=27.0

Q ss_pred             Cccccc--ccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCL--ICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +||.|+  .||+.|...+.|.+|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            479998  99999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=6.5e-08  Score=57.31  Aligned_cols=30  Identities=33%  Similarity=0.602  Sum_probs=27.7

Q ss_pred             CCccccc--ccccccCChhhhhhhhhcCCCCC
Q 045316          404 AQTYSCL--ICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       404 ~k~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +++|.|+  .||+.|...+.|.+|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3689999  89999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.46  E-value=5.6e-08  Score=55.55  Aligned_cols=28  Identities=29%  Similarity=0.654  Sum_probs=26.0

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      +++|.|++||+.|.+.+.|..|+++|+|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3689999999999999999999999975

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.45  E-value=2.7e-08  Score=59.05  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=24.7

Q ss_pred             CceeCCccccccCcccccccccccCc
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      +||+|.+|++.|.+.+.|.+|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            58999999999999999999999994

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=2.1e-08  Score=58.42  Aligned_cols=29  Identities=34%  Similarity=0.708  Sum_probs=27.2

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            68999999999999999999999999874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.45  E-value=4.4e-08  Score=55.45  Aligned_cols=27  Identities=22%  Similarity=0.592  Sum_probs=25.1

Q ss_pred             CCcccccccccccCChhhhhhhhhcCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      +++|.|++||+.|...+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            368999999999999999999999985

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.45  E-value=2.6e-08  Score=56.45  Aligned_cols=26  Identities=23%  Similarity=0.551  Sum_probs=24.9

Q ss_pred             CCceeCCccccccCcccccccccccC
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      ++||+|.+||+.|.+.+.|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            47999999999999999999999998

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.44  E-value=7.8e-08  Score=54.34  Aligned_cols=27  Identities=33%  Similarity=0.662  Sum_probs=24.3

Q ss_pred             cccccccccccCChhhhhhhhhcCCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +|.|++||+.|.++..|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999999874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.43  E-value=5.7e-08  Score=56.51  Aligned_cols=30  Identities=20%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKN  434 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~  434 (568)
                      ++|.|++||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999998864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.43  E-value=3.1e-08  Score=61.07  Aligned_cols=32  Identities=31%  Similarity=0.616  Sum_probs=29.4

Q ss_pred             cCCCCCceeCCc--cccccCcccccccccccCcC
Q 045316          476 GGGGSSEHKCNI--CNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       476 ~H~~~k~f~C~~--C~k~F~~~~~L~~H~r~H~~  507 (568)
                      .|++++||.|.+  |++.|.+.+.|.+|+++|++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            588999999995  99999999999999999943

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=6.3e-08  Score=54.77  Aligned_cols=27  Identities=22%  Similarity=0.600  Sum_probs=25.1

Q ss_pred             CCcccccccccccCChhhhhhhhhcCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      +++|.|++||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            368999999999999999999999985

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=3.9e-08  Score=55.66  Aligned_cols=27  Identities=22%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             CCceeCCccccccCcccccccccccCc
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ++||+|.+||+.|.+...|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999999983

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.41  E-value=5.2e-08  Score=55.67  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=25.4

Q ss_pred             CCceeCCccccccCcccccccccccCc
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ++||+|.+|++.|.+...|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999994

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=4.1e-08  Score=56.62  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=27.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|.+||+.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47999999999999999999999999875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.39  E-value=1.4e-07  Score=54.88  Aligned_cols=29  Identities=31%  Similarity=0.670  Sum_probs=26.8

Q ss_pred             CcccccccccccCChhhhhhh-hhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGH-VASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k  433 (568)
                      ++|.|+.||+.|.+.+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999 79999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.39  E-value=9.5e-08  Score=57.66  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             hcCCcCCcccccccccccCchhHHHHhhhCCCCCccccC
Q 045316          148 EEGNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQ  186 (568)
Q Consensus       148 h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~C~~  186 (568)
                      +.|++| |+|++||++|.++++|.+|+      ||.|..
T Consensus         3 ~~gekp-~~C~~CgK~F~~~s~L~~H~------py~C~~   34 (36)
T 1fv5_A            3 LLKPAR-FMCLPCGIAFSSPSTLEAHQ------AYYCSH   34 (36)
T ss_dssp             SSSCCC-CEETTTTEECSCHHHHHHHH------HHTSTT
T ss_pred             CCCccC-eECCCCCCccCCHhHccCcC------CeECcC
Confidence            456777 99999999999999999999      677754

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=6e-08  Score=55.86  Aligned_cols=29  Identities=24%  Similarity=0.502  Sum_probs=26.9

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47999999999999999999999998874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=1.6e-07  Score=58.21  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             CCCCcccc--ccccccCCchhHHHHHHHhccccCC
Q 045316           91 LGLPRTCS--ECGKQFTSGKALGGHKRACLQKIKN  123 (568)
Q Consensus        91 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~  123 (568)
                      ++++|.|.  .|++.|.....|.+|+++|++++||
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            68999999  5999999999999999999999885

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.7e-08  Score=54.75  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=24.1

Q ss_pred             CceeCCccccccCcccccccccccC
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      |||+|.+||+.|.+...|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5899999999999999999999998

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.34  E-value=1.7e-07  Score=53.88  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=26.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      ++|.|++||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.34  E-value=2.5e-07  Score=53.20  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=26.5

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      ++|.|++|++.|.....|.+|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999998763

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=6.3e-08  Score=54.20  Aligned_cols=26  Identities=31%  Similarity=0.723  Sum_probs=24.3

Q ss_pred             CcccccccccccCChhhhhhhhhcCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      ++|.|++||+.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=2e-07  Score=54.04  Aligned_cols=30  Identities=20%  Similarity=0.340  Sum_probs=27.4

Q ss_pred             CCCccccccccccCCchhHHHHHHHhcccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +++|.|.+||+.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999998763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.32  E-value=3.2e-07  Score=53.14  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             CCccccccccccCCchhHHHHHHHhccccC
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKIK  122 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~  122 (568)
                      ++|.|.+|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999998753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=3.7e-07  Score=52.38  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      ++|.|++|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998863

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=9e-08  Score=55.65  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=25.3

Q ss_pred             CCceeCCccccccCcccccccccccCc
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ++||+|.+|++.|.+...|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            479999999999999999999999994

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.28  E-value=3e-07  Score=52.78  Aligned_cols=29  Identities=41%  Similarity=0.626  Sum_probs=26.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=2e-07  Score=52.56  Aligned_cols=25  Identities=36%  Similarity=0.723  Sum_probs=23.2

Q ss_pred             ceeCCccccccCcccccccccccCc
Q 045316          482 EHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ||+|.+|++.|.+...|.+|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6999999999999999999999994

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=54.82  Aligned_cols=29  Identities=34%  Similarity=0.559  Sum_probs=26.3

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      ++|.|.+||+.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47999999999999999999999998763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.24  E-value=5.1e-07  Score=53.30  Aligned_cols=30  Identities=30%  Similarity=0.569  Sum_probs=27.3

Q ss_pred             CCCcccc--ccccccCCchhHHHHHHHhcccc
Q 045316           92 GLPRTCS--ECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        92 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +++|.|.  .||+.|.....|.+|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4789999  89999999999999999998763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.22  E-value=4.3e-07  Score=53.15  Aligned_cols=29  Identities=38%  Similarity=0.654  Sum_probs=26.4

Q ss_pred             CCcccc--ccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCS--ECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +||.|+  .||+.|.....|.+|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999998863

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.08  E-value=9.8e-07  Score=51.05  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=25.8

Q ss_pred             CCccccccccccCCchhHHHH-HHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGH-KRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H-~~~H~~~~  121 (568)
                      ++|.|..||+.|.+...|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999 68898763

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.08  E-value=8.8e-07  Score=50.75  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=25.1

Q ss_pred             Cccccc--ccccccCChhhhhhhhhcCCC
Q 045316          405 QTYSCL--ICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       405 k~~~C~--~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      ++|.|.  .||+.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999975

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.87  E-value=4e-06  Score=47.86  Aligned_cols=27  Identities=26%  Similarity=0.650  Sum_probs=24.5

Q ss_pred             CCcccc--ccccccCCchhHHHHHHHhcc
Q 045316           93 LPRTCS--ECGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        93 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~  119 (568)
                      ++|.|.  .|++.|.....|.+|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.06  E-value=7.4e-05  Score=58.50  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             HhcCCCCCceeCCccccccCcccccccccccC
Q 045316          474 AAGGGGSSEHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      ...|+|++||.|..|+|.|.+.+.|..|+++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            44799999999999999999999999998764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00061  Score=47.13  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=14.7

Q ss_pred             cccc--cccccccCchhHHHHhhh
Q 045316          155 HICY--VCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       155 ~~C~--~C~k~F~~~~~L~~H~~~  176 (568)
                      |.|.  .|++.+.....|..|+++
T Consensus        39 ~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           39 LACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             EECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CEeeCCCCcCCCCChHHHHhhccc
Confidence            6665  677666666667777665

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.00096  Score=46.13  Aligned_cols=58  Identities=14%  Similarity=0.001  Sum_probs=43.2

Q ss_pred             ccchhhHhHhhcchHHHHHHHH-HhhccccCCCCCCCcccc--ccccccCCchhHHHHHHHh
Q 045316           59 AAAAEADDRQFMEEDLLLQREQ-EQDQQDRGGVLGLPRTCS--ECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        59 ~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H  117 (568)
                      .|.=..|++.|.+...|..|+. .|.....+ ....+|.|.  .|++.+.....|..|+++.
T Consensus         3 ~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~-~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            3 KCKWKECPESASSLFDLQRHLLKDHVSQDFK-HPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCTTCCCCCSSHHHHHHHHHHHSCCCCCC-CSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eEeeCCCCCcCCCHHHHHHHHHhhccCcccC-CCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3444679999999999999985 55521111 123489997  8999999999999999964

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.88  E-value=0.00025  Score=56.98  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             CCCccccccccccCCchhHHHHH--HHhccc-cCCCCcccC---CCchhhhhhhccchhhhhhcCCcCCccccccccccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHK--RACLQK-IKNGTTHNN---QNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFR  165 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~--~~H~~~-~~~~~~~c~---~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~  165 (568)
                      .+++.|.+|+..|.+...+..|.  +.|... +.+.+....   .-++.+.    ...+...+.+.+. |-|.+|++.|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~C~~C~~~f~  104 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFK----AAPAEISDGEDRS-KCCPVCNMTFS  104 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCS----CCSSCCSSCCCTT-TEETTTTEECS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccC----CCccccccCCCCC-eEcCCCCCEeC
Confidence            46788999999999999999998  456432 111100000   0011111    1112334555666 99999999999


Q ss_pred             CchhHHHHhh
Q 045316          166 SVKSLYGHMR  175 (568)
Q Consensus       166 ~~~~L~~H~~  175 (568)
                      +...|..|+.
T Consensus       105 s~~~~~~H~~  114 (127)
T 1zu1_A          105 SPVVAESHYI  114 (127)
T ss_dssp             SHHHHHHHHT
T ss_pred             CHHHHHHHHC
Confidence            9999999984

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.75  E-value=3e-05  Score=62.37  Aligned_cols=81  Identities=16%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             CcccccccccccCChhhhhhhh--hcCCCC-CCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHV--ASHNKN-KNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~--~~H~~~-k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      +++.|.+|+..|.+.+.+..|.  +.|... +.|.+. ++.....-+..+.                 ...+...+.+.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~   92 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGEDSVPAKKFK-----------------AAPAEISDGEDR   92 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCCCCSCCCCS-----------------CCSSCCSSCCCT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCcccCCCCCccC-----------------CCccccccCCCC
Confidence            4689999999999999999998  567532 444431 1111110011110                 001223567788


Q ss_pred             ceeCCccccccCcccccccccc
Q 045316          482 EHKCNICNKIFPTGQALGGHKR  503 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r  503 (568)
                      .|-|.+|++.|.+...|..|+.
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHT
T ss_pred             CeEcCCCCCEeCCHHHHHHHHC
Confidence            9999999999999999999974

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.74  E-value=0.00028  Score=55.21  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             ccccCCCCcccccccccccCChhhhhhhhhcC
Q 045316          398 PVVMSTAQTYSCLICNKSFDKHQALGGHVASH  429 (568)
Q Consensus       398 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H  429 (568)
                      -..|+|+++|.|..|+|.|.+.+.|..|+++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            34588999999999999999999999999764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.41  E-value=0.0015  Score=40.27  Aligned_cols=26  Identities=38%  Similarity=0.763  Sum_probs=23.5

Q ss_pred             CCCccccccccccCCchhHHHHHHHh
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      ..+|.|+.|+..|.....|++||+.-
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCceeCCcccccccchHHHHhhhhhc
Confidence            37899999999999999999999943

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.08  E-value=0.0029  Score=38.97  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=21.9

Q ss_pred             CcccccccccccCChhhhhhhhh
Q 045316          405 QTYSCLICNKSFDKHQALGGHVA  427 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~  427 (568)
                      .+|.|+.|++.|.....|++||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            57999999999999999999998

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.90  E-value=0.045  Score=46.48  Aligned_cols=57  Identities=16%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCce
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEH  483 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f  483 (568)
                      ++..|+.|+..+ .+..|..|+...-..++-.|+.|+..+....                     |..|..+++|+.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~---------------------l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFED---------------------KEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGGG---------------------HHHHHTTCCC----
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHHH---------------------HHhHHHhCcChhhh
Confidence            467899999999 7888999998888888899999998876655                     99999999998765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.60  E-value=0.069  Score=45.33  Aligned_cols=80  Identities=11%  Similarity=0.093  Sum_probs=58.8

Q ss_pred             cccc--cccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCce
Q 045316          406 TYSC--LICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEH  483 (568)
Q Consensus       406 ~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f  483 (568)
                      ...|  .-|+..+. ...|..|.. .=.-++..|+.|+..+....                     |..|+...-..++-
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~~r~~---------------------l~~H~~~~C~~r~~  138 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPFQKFH---------------------INIHILKDCPRRQV  138 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEEEGGG---------------------HHHHHHHTCTTCEE
T ss_pred             ccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHHHHHH---------------------HHHHhhhhCCCCCe
Confidence            3667  46887764 567888874 33446778988887765444                     88898888888899


Q ss_pred             eCCccccccCcccccccccccCcCCCC
Q 045316          484 KCNICNKIFPTGQALGGHKRCHWTGPA  510 (568)
Q Consensus       484 ~C~~C~k~F~~~~~L~~H~r~H~~~~~  510 (568)
                      .|..|+..|. ...|..|..++ .|+.
T Consensus       139 ~C~~C~~~~~-~~~l~~H~~~~-~~~~  163 (170)
T 3hcs_A          139 SCDNCAASMA-FEDKEIHDQNC-PLAL  163 (170)
T ss_dssp             ECTTTCCEEE-GGGHHHHHTTC-CC--
T ss_pred             ECCCCCCccC-HHHHHhHHHhC-cChh
Confidence            9999999885 57789999999 4443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.98  E-value=0.14  Score=29.63  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             CccccccccccCCchhHHHHHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      .|.|++|.+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            49999999999999999999985

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.56  E-value=0.066  Score=30.93  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             ceeCCccccccCcccccccc-cccCcC
Q 045316          482 EHKCNICNKIFPTGQALGGH-KRCHWT  507 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H-~r~H~~  507 (568)
                      .|.|++|.+.|.+...|..| ...|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            59999999999999999999 566743

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=90.29  E-value=0.094  Score=37.74  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=25.5

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCCCccc
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNKNVKE  437 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C  437 (568)
                      +....|-+|||.|.   .|++|+++|+|..|..+
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCHHHH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCHHHH
Confidence            34578999999998   58899999989887543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=89.76  E-value=0.47  Score=33.70  Aligned_cols=53  Identities=9%  Similarity=0.145  Sum_probs=37.2

Q ss_pred             CCCcccccccCCCCcccc-cccccccCChhhhhhhhhcCCCCCCccccccchhhhc
Q 045316          392 GALKEEPVVMSTAQTYSC-LICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAE  446 (568)
Q Consensus       392 ~~l~~h~~~h~~~k~~~C-~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~  446 (568)
                      ..|..|. .+=.-.+..| ..|+..+. +..|..|+...-..++..|..|+..|..
T Consensus         3 ~~l~~H~-~~C~~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~   56 (76)
T 2yuc_A            3 SGSSGHL-NTCSFNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG   56 (76)
T ss_dssp             CSCSCCC-CCCCCSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH
T ss_pred             hHHHHHH-HHCCCcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH
Confidence            3455565 3334456789 58998875 5788999876667788889888777653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.34  E-value=0.22  Score=35.81  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccccC
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKIK  122 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~  122 (568)
                      .....|-+||+.|.   .|++|+++|+|-.|
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCH
Confidence            45678999999998   48899999888665

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=86.47  E-value=0.18  Score=35.89  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=41.0

Q ss_pred             hhhhhhhhcCCCCCCccc-cccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccc
Q 045316          420 QALGGHVASHNKNKNVKE-SSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQAL  498 (568)
Q Consensus       420 ~~L~~H~~~H~~~k~~~C-~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L  498 (568)
                      ..|..|+ .+-.-.+-.| ..|+..+....                     |..|+...-..++-.|..|+..|.. ..|
T Consensus         3 ~~l~~H~-~~C~~~~v~C~~~C~~~v~r~~---------------------l~~H~~~~C~~r~v~C~~C~~~~~~-~~l   59 (76)
T 2yuc_A            3 SGSSGHL-NTCSFNVIPCPNRCPMKLSRRD---------------------LPAHLQHDCPKRRLKCEFCGCDFSG-EAY   59 (76)
T ss_dssp             CSCSCCC-CCCCCSCCBCTTCCSCBCCSSS---------------------STTTTTTSCTTSCCCCSSSCCCCCH-HHH
T ss_pred             hHHHHHH-HHCCCcccCCCccccHHhhHhH---------------------HHhhCHhhCCCcceECCCCCCccCH-HHH
Confidence            4566666 3444456678 46776655433                     5555554555678899999999875 457


Q ss_pred             ccccccC
Q 045316          499 GGHKRCH  505 (568)
Q Consensus       499 ~~H~r~H  505 (568)
                      ..|...-
T Consensus        60 ~~H~~~C   66 (76)
T 2yuc_A           60 ESHEGMC   66 (76)
T ss_dssp             HHTTTSC
T ss_pred             HHHHhHC
Confidence            8887554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.62  E-value=0.67  Score=32.51  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             HHHHHhcCCCCCceeCCccccccCcccccccccccCcCCCC
Q 045316          470 LAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGPA  510 (568)
Q Consensus       470 L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~~~  510 (568)
                      |..|...=.+-..|.|-.|++.|.. ..++.|-..=+..+.
T Consensus        25 v~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~HtsCISEaeK   64 (79)
T 1wjv_A           25 VEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVKCISEGQK   64 (79)
T ss_dssp             HHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCCCCCSCTTS
T ss_pred             chhHHhhCCCCCcEEecccCCeeCC-CCEeCEeeeCChhhe
Confidence            8888776666678999999999995 668888654433333

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.89  E-value=0.94  Score=25.08  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             CCccccccccccCCchhHHHHHHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      -.-.|.+|.+.|+...+|..|++-
T Consensus         8 ikqhcrfckkkysdvknlikhire   31 (37)
T 2elu_A            8 IKQHCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345699999999999999999994

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.47  E-value=0.56  Score=27.13  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             CcccccccccccCChhhhhhhhh
Q 045316          405 QTYSCLICNKSFDKHQALGGHVA  427 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~  427 (568)
                      ..+.|..|+-+|.+-..+..|++
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            46899999999999999999975

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=82.12  E-value=1  Score=28.78  Aligned_cols=21  Identities=19%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             ccccccccccCCchhHHHHHH
Q 045316           95 RTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      -.|.+|+..|..+..|+.|+=
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            699999999999999999985

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=81.71  E-value=1.3  Score=25.62  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.8

Q ss_pred             CCCCccccccccccCCchhHHHHHH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      ....+.|..|+.+|.+...+..|.+
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhe
Confidence            4567889999999999999999988

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=81.66  E-value=0.57  Score=35.01  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccchh
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASA  443 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~  443 (568)
                      .+|+|..||..|.  .         .-.+|-+|+.|+..
T Consensus        66 ~p~~C~~CG~~F~--~---------~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVFK--A---------EINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBCC--C---------CSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCeec--c---------cCCCCCCCcCCCCC
Confidence            4799999999992  1         12378899988754

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=80.67  E-value=0.7  Score=28.86  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=20.5

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS  442 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~  442 (568)
                      +.|+|.+||..|.-...--  ...-.-...+.|++||.
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--t~f~~lP~dw~CP~Cg~   38 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--VPFDQLPDDWCCPVCGV   38 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--CCGGGSCTTCBCTTTCC
T ss_pred             CEEECCCCCeEEeCCcCCC--cchhhCCCCCcCcCCCC
Confidence            3599999999886432111  00000112379999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	7e-10
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	1e-07
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	3e-05
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	0.001

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.0 bits (125), Expect = 7e-10
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 483 HKCNICNKIFPTGQALGGHKRCH 505
           + C+ C + F + QALGGH   H
Sbjct: 6   YTCSFCKREFRSAQALGGHMNVH 28

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.5 bits (108), Expect = 1e-07
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 405 QTYSCLICNKSFDKHQALGGHVASHNKNKN 434
           ++Y+C  C + F   QALGGH+  H +++ 
Sbjct: 4   RSYTCSFCKREFRSAQALGGHMNVHRRDRA 33

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 96  TCSECGKQFTSGKALGGHKRA 116
           TCS C ++F S +ALGGH   
Sbjct: 7   TCSFCKREFRSAQALGGHMNV 27

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 155 HICYVCHQSFRSVKSLYGHMRKH 177
           + C  C + FRS ++L GHM  H
Sbjct: 6   YTCSFCKREFRSAQALGGHMNVH 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.65
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.45
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.44
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.42
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.41
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.39
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.38
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.34
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.33
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.31
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.26
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.25
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.2
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.19
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.11
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.08
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.06
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.05
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.02
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.0
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.97
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.91
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.89
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.88
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.82
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.8
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.79
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.79
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.78
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.75
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.68
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.54
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.33
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.32
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.27
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.12
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.11
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.1
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.1
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.99
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.94
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.93
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.92
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.92
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.88
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.82
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.79
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.68
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.67
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.61
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.6
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.6
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.58
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.56
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.54
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.52
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.52
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.51
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.46
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.45
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.39
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.36
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.83
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.78
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.51
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.5
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.49
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.46
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.35
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.29
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.25
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.15
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.87
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.85
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.72
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.6
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.41
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.31
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.18
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.16
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.85
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.49
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.26
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.16
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.87
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.46
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.19
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.08
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.93
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.85
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.85
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.08
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.98
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.64
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.5
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.33
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.64
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	88.69
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	88.59
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	87.9
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.48
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.37
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	85.2
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	84.62
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.85
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	80.6

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3e-18  Score=114.01  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=50.2

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGG  477 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H  477 (568)
                      ||+|+|+ |||+|..+.+|..|+++|+|++||.|++||++|.....                    |..||++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~--------------------L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH--------------------LVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHH--------------------HHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHH--------------------HHHHHhcC
Confidence            5899995 99999999999999999999999999999999998886                    99999988

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-17  Score=109.47  Aligned_cols=53  Identities=32%  Similarity=0.515  Sum_probs=50.6

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY  171 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~  171 (568)
                      +|+|.|+ ||+.|..+..|.+|+++|+|++|                                |.|++||++|.+.+.|.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp--------------------------------y~C~~C~k~F~~~~~L~   47 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP--------------------------------YGCGVCGKKFKMKHHLV   47 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS--------------------------------EECTTTSCEESSSHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC--------------------------------CcCCCcCCEecCHHHHH
Confidence            5899995 99999999999999999999988                                99999999999999999


Q ss_pred             HHhhhC
Q 045316          172 GHMRKH  177 (568)
Q Consensus       172 ~H~~~H  177 (568)
                      .||++|
T Consensus        48 ~H~r~H   53 (53)
T d2csha1          48 GHMKIH   53 (53)
T ss_dssp             HHHTTT
T ss_pred             HHHhcC
Confidence            999988

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.7e-15  Score=89.59  Aligned_cols=37  Identities=27%  Similarity=0.598  Sum_probs=34.3

Q ss_pred             CCCcccccccccccCChhhhhhhhh-cCCCCCCccccc
Q 045316          403 TAQTYSCLICNKSFDKHQALGGHVA-SHNKNKNVKESS  439 (568)
Q Consensus       403 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~  439 (568)
                      .+|||+|++|||+|..+++|++||+ +|+|+|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 899999999964

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.7e-15  Score=89.50  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=33.7

Q ss_pred             HHHhcCCCCCceeCCccccccCcccccccccccCcC
Q 045316          472 AAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       472 ~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +|+++|+++|||+|++|||+|.+.++|.+|+|+|++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            478999999999999999999999999999999943

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-14  Score=86.10  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=35.9

Q ss_pred             ccccccCCCCcccccccccccCChhhhhhhhhcCCCC
Q 045316          396 EEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       396 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +|+++|+++|||+|++|||+|...++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-14  Score=82.83  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             cCCCCCceeCCccccccCcccccccccccCcC
Q 045316          476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHWT  507 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~  507 (568)
                      +|+|+|||+|.+|||+|.++++|.+|+|+|++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            69999999999999999999999999999943

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.3e-14  Score=86.30  Aligned_cols=34  Identities=24%  Similarity=0.552  Sum_probs=32.6

Q ss_pred             HHhcCCCCCceeCCccccccCcccccccccccCc
Q 045316          473 AAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       473 H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |.|+|+|||||+|.+|+++|.++++|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6799999999999999999999999999999993

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-14  Score=84.31  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             hcCCCCCceeCCccccccCcccccccccccCcCC
Q 045316          475 AGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                      |+|+|||||+|.+||++|.++++|.+||++|+..
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            6899999999999999999999999999999543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.9e-14  Score=80.51  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=31.9

Q ss_pred             ccCCCCcccccccccccCChhhhhhhhhcCCCC
Q 045316          400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +|+++|||+|.+|||+|..++.|.+|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.1e-14  Score=82.50  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             hcCCCCCceeCCccccccCcccccccccccCcCCC
Q 045316          475 AGGGGSSEHKCNICNKIFPTGQALGGHKRCHWTGP  509 (568)
Q Consensus       475 ~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~~  509 (568)
                      |+|+|||||+|++|+++|+++++|++|++.|++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            58999999999999999999999999986654543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.3e-13  Score=79.89  Aligned_cols=30  Identities=27%  Similarity=0.486  Sum_probs=29.1

Q ss_pred             CCCCCceeCCccccccCcccccccccccCc
Q 045316          477 GGGSSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       477 H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |+|||||+|.+|+|.|.++++|++|||+|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            899999999999999999999999999993

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-13  Score=81.30  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=33.3

Q ss_pred             CCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCCCCCceeCCc
Q 045316          431 KNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGGGSSEHKCNI  487 (568)
Q Consensus       431 ~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~~~k~f~C~~  487 (568)
                      -+|||+|++||++|...+.                    |++||+ +|+|+|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~--------------------L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDH--------------------LNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHH--------------------HHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHH--------------------hhccCcCccCCCcCcCCcC
Confidence            4799999999999988776                    999975 899999999985

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.31  E-value=3e-13  Score=74.91  Aligned_cols=29  Identities=28%  Similarity=0.759  Sum_probs=27.9

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      |||.|++|||+|..+++|++|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.1e-13  Score=79.12  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             cccCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          399 VVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      ++|+++|||+|.+|||+|..+++|.+|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57999999999999999999999999999999763

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=8.2e-13  Score=78.46  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=33.6

Q ss_pred             cccccCCCCcccccccccccCChhhhhhhhhcCCC
Q 045316          397 EPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       397 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      |.++|+++|||+|++|||+|..+++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78999999999999999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=7.9e-13  Score=76.55  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      |+|+|||+|++|+|.|.++++|++|+++|+++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            789999999999999999999999999999763

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.6e-13  Score=73.05  Aligned_cols=29  Identities=28%  Similarity=0.684  Sum_probs=27.9

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      |||.|++|||+|.++++|.+|+|+|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=7.9e-13  Score=72.09  Aligned_cols=28  Identities=25%  Similarity=0.717  Sum_probs=26.9

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      ||||+|++|||+|..+++|.+|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999987

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-12  Score=76.73  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=30.8

Q ss_pred             ccccc--cccccCChhhhhhhhhcCCCCCCcccc
Q 045316          407 YSCLI--CNKSFDKHQALGGHVASHNKNKNVKES  438 (568)
Q Consensus       407 ~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~  438 (568)
                      |.|++  |||+|.++++|++|+++|+|+|||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            88988  999999999999999999999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.9e-12  Score=81.11  Aligned_cols=41  Identities=22%  Similarity=0.613  Sum_probs=36.9

Q ss_pred             CCCcccccccCCCCcccccc--cccccCChhhhhhhhhcCCCCC
Q 045316          392 GALKEEPVVMSTAQTYSCLI--CNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       392 ~~l~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +.+..|+ .|++++||.|.+  |||+|..+++|++|+++|+|||
T Consensus         5 ~~l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3466677 499999999988  9999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.14  E-value=7.7e-12  Score=69.15  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=27.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +||.|++||+.|...+.|++|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.2e-12  Score=74.09  Aligned_cols=33  Identities=24%  Similarity=0.575  Sum_probs=29.5

Q ss_pred             cccCCCCcccccccccccCChhhhhhhhhc-CCC
Q 045316          399 VVMSTAQTYSCLICNKSFDKHQALGGHVAS-HNK  431 (568)
Q Consensus       399 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~  431 (568)
                      ++|+|+|||+|++|||+|..+++|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            579999999999999999999999999754 554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.1e-11  Score=67.56  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=26.9

Q ss_pred             CCCccccccccccCCchhHHHHHHHhcc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~  119 (568)
                      +|||+|++|++.|..++.|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-11  Score=67.59  Aligned_cols=29  Identities=28%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      |||.|++||+.|..++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=5.9e-12  Score=78.86  Aligned_cols=42  Identities=5%  Similarity=-0.061  Sum_probs=38.2

Q ss_pred             hhhhhhhhhcCCCCCCccccc--cchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316          419 HQALGGHVASHNKNKNVKESS--SASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS  481 (568)
Q Consensus       419 ~~~L~~H~~~H~~~k~~~C~~--C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k  481 (568)
                      +..|.+|++ |+|++||+|++  |+++|...+.                    |+.|+++|+|||
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~--------------------L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYN--------------------IRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSS--------------------HHHHHHHHTTTC
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchH--------------------HHhhcccccCCC
Confidence            467888885 99999999988  9999999987                    999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.1e-11  Score=67.55  Aligned_cols=28  Identities=29%  Similarity=0.634  Sum_probs=26.9

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      |||.|++  |||+|.++++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899999  999999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.3e-11  Score=67.59  Aligned_cols=29  Identities=28%  Similarity=0.641  Sum_probs=27.0

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      |||.|++  |||+|...++|++|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            5899965  9999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-11  Score=65.06  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=24.8

Q ss_pred             CcccccccccccCChhhhhhhhhcCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |||+|..|||+|..++.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-11  Score=67.79  Aligned_cols=28  Identities=29%  Similarity=0.624  Sum_probs=26.7

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      |||.|++  |||+|..+++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.2e-10  Score=67.94  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             ccccc--cccccCCchhHHHHHHHhccccCCCCc
Q 045316           95 RTCSE--CGKQFTSGKALGGHKRACLQKIKNGTT  126 (568)
Q Consensus        95 ~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~  126 (568)
                      |.|++  ||+.|..+..|++|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            78987  999999999999999999999996554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.1e-10  Score=60.47  Aligned_cols=26  Identities=38%  Similarity=0.722  Sum_probs=24.9

Q ss_pred             CCccccccccccCCchhHHHHHHHhc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      |||+|..|||.|...+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.5e-10  Score=62.53  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=26.7

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhccc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      |||+|++  ||+.|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.2e-10  Score=62.89  Aligned_cols=28  Identities=32%  Similarity=0.526  Sum_probs=26.5

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhccc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      |||.|++  ||+.|...+.|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.5e-10  Score=54.75  Aligned_cols=26  Identities=27%  Similarity=0.649  Sum_probs=24.7

Q ss_pred             cccccccccccCChhhhhhhhhcCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      |++|++|||.|+++..|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=5.1e-10  Score=62.93  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=25.8

Q ss_pred             CCceeCCc--cccccCcccccccccccCc
Q 045316          480 SSEHKCNI--CNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       480 ~k~f~C~~--C~k~F~~~~~L~~H~r~H~  506 (568)
                      ||||.|.+  |+|+|++.++|++|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999999  9999999999999999994

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.9e-10  Score=61.89  Aligned_cols=29  Identities=38%  Similarity=0.654  Sum_probs=26.6

Q ss_pred             CCcccc--ccccccCCchhHHHHHHHhcccc
Q 045316           93 LPRTCS--ECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        93 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +||.|+  .||+.|...++|++|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689996  59999999999999999999975

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1e-09  Score=61.65  Aligned_cols=29  Identities=34%  Similarity=0.653  Sum_probs=27.0

Q ss_pred             CCcccccc--cccccCChhhhhhhhhcCCCC
Q 045316          404 AQTYSCLI--CNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       404 ~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +|||.|++  |||+|.+.++|++|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999999  999999999999999999864

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3e-10  Score=62.21  Aligned_cols=27  Identities=26%  Similarity=0.771  Sum_probs=25.7

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~  431 (568)
                      |||+|++  |||+|.+.++|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899998  99999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.4e-10  Score=55.01  Aligned_cols=25  Identities=44%  Similarity=0.931  Sum_probs=23.7

Q ss_pred             ceeCCccccccCcccccccccccCc
Q 045316          482 EHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |++|++|+|.|+++..|+.|||.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            6799999999999999999999994

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.7e-10  Score=59.52  Aligned_cols=26  Identities=35%  Similarity=0.811  Sum_probs=24.7

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~  430 (568)
                      |||.|++  |||+|.+.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899999  9999999999999999996

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.8e-10  Score=60.22  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=24.6

Q ss_pred             CceeCCc--cccccCcccccccccccCc
Q 045316          481 SEHKCNI--CNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       481 k~f~C~~--C~k~F~~~~~L~~H~r~H~  506 (568)
                      |||.|++  |||+|++.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999999  9999999999999999993

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.3e-09  Score=57.18  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CcccccccccccCChhhhhhhhhcCCCCCCcc
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVK  436 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~  436 (568)
                      +...|+.|||.|.....|.+|..+|+|||||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45789999999999999999999999999983

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.5e-09  Score=55.72  Aligned_cols=27  Identities=22%  Similarity=0.576  Sum_probs=25.6

Q ss_pred             CCceeCCccccccCcccccccccccCc
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      ||||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999993

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=3.8e-09  Score=57.75  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=25.5

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhcc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  119 (568)
                      |||.|++  |+|.|.+.+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=1.1e-08  Score=52.56  Aligned_cols=27  Identities=22%  Similarity=0.576  Sum_probs=25.6

Q ss_pred             CCcccccccccccCChhhhhhhhhcCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      ++||.|++||+.|......++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999995

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-08  Score=52.03  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             CCceeCCccccccCcccccccccccCcCC
Q 045316          480 SSEHKCNICNKIFPTGQALGGHKRCHWTG  508 (568)
Q Consensus       480 ~k~f~C~~C~k~F~~~~~L~~H~r~H~~~  508 (568)
                      ||||.|++|+..|.++..+..|.|.|.++
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=51.66  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccccCC
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKN  123 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  123 (568)
                      .+...|+.|||.|.....|.+|..+|.+++||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            46678999999999999999999999999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1e-07  Score=48.14  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=25.2

Q ss_pred             cccccccccccCChhhhhhhhhcCCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      .+.|..|||+|...+.|++|..+|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            368999999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-07  Score=48.58  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=26.1

Q ss_pred             ccccccccccCChhhhhhhhhcCCCCC
Q 045316          407 YSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      |.|++||......+-|+.|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            899999999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.7e-07  Score=47.51  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=27.2

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      ++||+|.+|...-+..+.|..|+|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47999999999999999999999999984

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.1e-07  Score=48.32  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=27.1

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      ++||.|++|+..|+.+..+..|+|+|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=3.6e-07  Score=45.35  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=24.9

Q ss_pred             cccccccccCChhhhhhhhhcCCCCC
Q 045316          408 SCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       408 ~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      +|+.|.|+|.++..|+.|-|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.8e-07  Score=45.25  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=25.8

Q ss_pred             CccccccccccCCchhHHHHHHHhcccc
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      .|.|++||......+-|+.|+|+|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            4899999999999999999999999864

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.8e-07  Score=45.86  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      ++||+|.+|.+.-.+.+.|..|+|.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            48999999999999999999999999874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=6.5e-07  Score=50.76  Aligned_cols=30  Identities=37%  Similarity=0.963  Sum_probs=27.3

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKNK  433 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k  433 (568)
                      .+.|+|.+|+|.|.+..+|-.||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            357999999999999999999999998765

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.99  E-value=1.7e-06  Score=42.11  Aligned_cols=24  Identities=38%  Similarity=0.787  Sum_probs=23.0

Q ss_pred             ccccccccccCChhhhhhhhhcCC
Q 045316          407 YSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       407 ~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |+|..|.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.3e-06  Score=44.08  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=22.8

Q ss_pred             CccccccccccCCchhHHHHHHHhccc
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      .+.|..|||.|...+.|++|..+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357889999999999999999888874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.5e-06  Score=45.30  Aligned_cols=27  Identities=26%  Similarity=0.641  Sum_probs=24.7

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~  431 (568)
                      |||.|.+  |+|++...++|+.|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899998  99999999999999998765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.8e-06  Score=42.11  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             cccccccccCCchhHHHHHHHhcccc
Q 045316           96 TCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        96 ~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      +|+.|.+.|.++..|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58999999999999999999998874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.3e-06  Score=44.54  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=24.3

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhcc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  119 (568)
                      +||.|.+  |+|+|...++|+.|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899988  99999999999999998764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=9.4e-07  Score=44.38  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             CceeCCccccccCcccccccccccCc
Q 045316          481 SEHKCNICNKIFPTGQALGGHKRCHW  506 (568)
Q Consensus       481 k~f~C~~C~k~F~~~~~L~~H~r~H~  506 (568)
                      |||+|..|+++-...+.|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999994

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.88  E-value=1.6e-06  Score=42.22  Aligned_cols=23  Identities=39%  Similarity=0.829  Sum_probs=22.4

Q ss_pred             eeCCccccccCcccccccccccC
Q 045316          483 HKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       483 f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      |+|.+|.++|..++.|.+|+|+|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=2.6e-06  Score=43.35  Aligned_cols=29  Identities=28%  Similarity=0.696  Sum_probs=26.8

Q ss_pred             CCcccccccccccCChhhhhhhhhcCCCC
Q 045316          404 AQTYSCLICNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +..|.|..|...|..+-.|+.||-+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            35699999999999999999999999986

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.8e-06  Score=42.16  Aligned_cols=27  Identities=22%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             CcccccccccccCChhhhhhhhhcCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      +||+|..|+..-...+.|+.|+|+|..
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCcccccccchhcchhhHhhhhhcccC
Confidence            689999999999999999999999963

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=1.1e-05  Score=45.65  Aligned_cols=30  Identities=37%  Similarity=0.596  Sum_probs=27.3

Q ss_pred             CCCccccccccccCCchhHHHHHHHhcccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQKI  121 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~  121 (568)
                      .+.|.|.+|++.|.+-..|--||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            578999999999999999999999997664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.4e-05  Score=40.60  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=26.8

Q ss_pred             CCCccccccccccCCchhHHHHHHHhccc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      +..|.|..|...|+.+-.|+.||.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            46799999999999999999999999985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=9.6e-06  Score=41.33  Aligned_cols=22  Identities=32%  Similarity=0.603  Sum_probs=21.1

Q ss_pred             cccccccccccCchhHHHHhhh
Q 045316          155 HICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      |.|..|..+|.++++|..||+.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            9999999999999999999975

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.5e-06  Score=46.53  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             CCCCceeCCccccccCccccccccccc
Q 045316          478 GGSSEHKCNICNKIFPTGQALGGHKRC  504 (568)
Q Consensus       478 ~~~k~f~C~~C~k~F~~~~~L~~H~r~  504 (568)
                      +|.|||.|.+|+|.|-.+.++.+|.-.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578999999999999999999999743

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.60  E-value=7.1e-06  Score=43.05  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=22.4

Q ss_pred             ceeCCccccccCcccccccc-cccC
Q 045316          482 EHKCNICNKIFPTGQALGGH-KRCH  505 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H-~r~H  505 (568)
                      ||.|.+|++.|+++..|-+| .+.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            79999999999999999999 5677

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.7e-05  Score=39.86  Aligned_cols=26  Identities=15%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             CCccccccccccCCchhHHHHHHHhc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      +||.|.+|...-...++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            68999999999999999999999743

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.56  E-value=2.1e-05  Score=39.95  Aligned_cols=25  Identities=32%  Similarity=0.709  Sum_probs=22.8

Q ss_pred             CCccccc--cccccCCchhHHHHHHHh
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H  117 (568)
                      .||.|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899976  999999999999999987

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.54  E-value=6.9e-06  Score=41.92  Aligned_cols=28  Identities=25%  Similarity=0.583  Sum_probs=25.7

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +||.|..  |.|.|.+...|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5799977  999999999999999999986

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.52  E-value=8.3e-06  Score=41.42  Aligned_cols=25  Identities=32%  Similarity=0.596  Sum_probs=22.8

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASH  429 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H  429 (568)
                      .||+|+.  |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3799977  999999999999999887

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.8e-05  Score=41.51  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=25.3

Q ss_pred             Ccccccc--cccccCChhhhhhhh-hcCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHV-ASHNKN  432 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~-~~H~~~  432 (568)
                      |||.|++  |+|+|...+.--.|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5899999  999999999999997 999764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.6e-05  Score=40.48  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             CccccccccccCCchhHHHHHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      ||.|..|+..|.++.+|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999984

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.9e-05  Score=39.71  Aligned_cols=28  Identities=29%  Similarity=0.598  Sum_probs=24.6

Q ss_pred             CcccccccccccCChhhhhhhhhc-CCCC
Q 045316          405 QTYSCLICNKSFDKHQALGGHVAS-HNKN  432 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~  432 (568)
                      +||.|.+|...-...++|+.|+++ |..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            589999999999999999999976 5544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.46  E-value=2.2e-05  Score=41.18  Aligned_cols=27  Identities=33%  Similarity=0.732  Sum_probs=23.9

Q ss_pred             cccccccccccCChhhhhhhh-hcCCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHV-ASHNKN  432 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~-~~H~~~  432 (568)
                      ||.|.+|++.|..+.-|.+|. +.|.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            699999999999999999995 678763

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.1e-05  Score=44.41  Aligned_cols=26  Identities=31%  Similarity=0.623  Sum_probs=23.1

Q ss_pred             CCCCcccccccccccCChhhhhhhhh
Q 045316          402 STAQTYSCLICNKSFDKHQALGGHVA  427 (568)
Q Consensus       402 ~~~k~~~C~~C~k~F~~~~~L~~H~~  427 (568)
                      +|-|||.|.+|+|.|-++..+.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            45689999999999999999999973

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.3e-05  Score=41.10  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             CceeCCc--cccccCccccccccc-ccCc
Q 045316          481 SEHKCNI--CNKIFPTGQALGGHK-RCHW  506 (568)
Q Consensus       481 k~f~C~~--C~k~F~~~~~L~~H~-r~H~  506 (568)
                      |||.|.+  |.|+|+..+.-..|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6999999  999999999999996 9994

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.36  E-value=5.8e-05  Score=38.47  Aligned_cols=28  Identities=36%  Similarity=0.496  Sum_probs=24.9

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhccc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      +||.|.+  |.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5888976  999999999999999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=9.5e-05  Score=41.26  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             CCCCceeCCc--cccccCcccccccccccC
Q 045316          478 GGSSEHKCNI--CNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       478 ~~~k~f~C~~--C~k~F~~~~~L~~H~r~H  505 (568)
                      +.+|||.|..  |+.+|.+...|..|.+.|
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhh
Confidence            3589999954  999999999999999998

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00015  Score=39.61  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             ccccc--c---ccccCChhhhhhhhhcCCCC
Q 045316          407 YSCLI--C---NKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       407 ~~C~~--C---~k~F~~~~~L~~H~~~H~~~  432 (568)
                      |.|..  |   ++.|..+..|..|||+||||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            55544  5   46699999999999999986

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00024  Score=34.46  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             ceeCCccccccCccccccccc
Q 045316          482 EHKCNICNKIFPTGQALGGHK  502 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~  502 (568)
                      ||+|.-|...|-++..|+.||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            899999999999999999996

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.50  E-value=0.0005  Score=33.48  Aligned_cols=22  Identities=18%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             cccccccccccCchhHHHHhhh
Q 045316          155 HICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      |.|++|-+.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8999999999999999999865

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0003  Score=35.06  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.2

Q ss_pred             ceeCCccccccCcccccccccc
Q 045316          482 EHKCNICNKIFPTGQALGGHKR  503 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r  503 (568)
                      ||+|..|||.|.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999853

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00094  Score=34.03  Aligned_cols=27  Identities=19%  Similarity=0.301  Sum_probs=23.9

Q ss_pred             CCccccccccccCCchhHHHHHHHhcc
Q 045316           93 LPRTCSECGKQFTSGKALGGHKRACLQ  119 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~  119 (568)
                      +||+|.+|..--...++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999986444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00072  Score=33.66  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.0

Q ss_pred             cccccccccccCChhhhhhhhh
Q 045316          406 TYSCLICNKSFDKHQALGGHVA  427 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~  427 (568)
                      ||+|..|||.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6999999999999999999963

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00085  Score=34.19  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             cccccccccccCchhHHHHhhh
Q 045316          155 HICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      |+|.+|..--++.++|..|++.
T Consensus         3 FkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           3 FKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             cccceecccccCcchHHHHHHH
Confidence            9999999999999999999864

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00074  Score=33.89  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             cccccccccccCChhhhhhhhhcCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      |-+|+.|..+..++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4689999999999999999999985

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0012  Score=31.95  Aligned_cols=22  Identities=41%  Similarity=0.756  Sum_probs=20.6

Q ss_pred             CccccccccccCCchhHHHHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      ||+|.-|...|..+..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999985

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.00091  Score=39.16  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=22.8

Q ss_pred             cccccccccccCChhhhhhhhhcCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~  430 (568)
                      .|.|.+|||.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4999999999999999999987773

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0026  Score=35.37  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=25.0

Q ss_pred             CCCCccc--cccccccCCchhHHHHHHHhc
Q 045316           91 LGLPRTC--SECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        91 ~~~~~~C--~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4799999  559999999999999999885

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.002  Score=32.25  Aligned_cols=25  Identities=40%  Similarity=0.614  Sum_probs=22.2

Q ss_pred             CccccccccccCCchhHHHHHHHhc
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      |-+|+.|.++.+++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4579999999999999999999884

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0021  Score=34.33  Aligned_cols=26  Identities=19%  Similarity=0.597  Sum_probs=23.2

Q ss_pred             cccccccccccCChhhhhhhhhcCCC
Q 045316          406 TYSCLICNKSFDKHQALGGHVASHNK  431 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~~~H~~  431 (568)
                      .|.|..|||+|.++..+.+|...-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            59999999999999999999876655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.60  E-value=0.0031  Score=30.61  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             ccccccccccCCchhHHHHHHH
Q 045316           95 RTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        95 ~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      |.|++|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999985

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0015  Score=34.86  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=22.3

Q ss_pred             ceeCCccccccCcccccccccccC
Q 045316          482 EHKCNICNKIFPTGQALGGHKRCH  505 (568)
Q Consensus       482 ~f~C~~C~k~F~~~~~L~~H~r~H  505 (568)
                      .|.|..|||.|.++..+.+|....
T Consensus         4 afvcskcgktftrrntm~rha~nc   27 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNC   27 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHC
T ss_pred             eeeecccccchhcchHHHHHhhhc
Confidence            699999999999999999998777

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.31  E-value=0.0017  Score=33.63  Aligned_cols=28  Identities=25%  Similarity=0.687  Sum_probs=25.2

Q ss_pred             Ccccccc--cccccCChhhhhhhhhcCCCC
Q 045316          405 QTYSCLI--CNKSFDKHQALGGHVASHNKN  432 (568)
Q Consensus       405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~  432 (568)
                      +.|.|.+  |+..|...+.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4688976  999999999999999999986

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0051  Score=35.92  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CCCccccccccccCCchhHHHHHHHhc
Q 045316           92 GLPRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      ...|.|-+|||.|.....|+.|...|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            457899999999999999999999884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0053  Score=30.61  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             CccccccccccCCchhHHHHHHH
Q 045316           94 PRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      .|.|+.|+.....++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            58999999999999999999984

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0059  Score=33.24  Aligned_cols=20  Identities=20%  Similarity=0.106  Sum_probs=16.1

Q ss_pred             ccccCCchhHHHHHHHhccc
Q 045316          101 GKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus       101 ~k~F~~~~~L~~H~~~H~~~  120 (568)
                      ++.|..+..|..|||+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45688888888888888875

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.49  E-value=0.012  Score=30.36  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCccccc--cccccCCchhHHHHHHHhccc
Q 045316           93 LPRTCSE--CGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      +.|.|.+  |+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688864  888888888888888888875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.0099  Score=29.61  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             cccccccccccCchhHHHHhhh
Q 045316          155 HICYVCHQSFRSVKSLYGHMRK  176 (568)
Q Consensus       155 ~~C~~C~k~F~~~~~L~~H~~~  176 (568)
                      |.|+.|+-...+++.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            9999999999999999999975

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.16  E-value=0.0037  Score=30.92  Aligned_cols=24  Identities=46%  Similarity=0.851  Sum_probs=20.7

Q ss_pred             ccccc--cccccCChhhhhhhhhcCC
Q 045316          407 YSCLI--CNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       407 ~~C~~--C~k~F~~~~~L~~H~~~H~  430 (568)
                      |.|..  |||.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            66755  9999999999999998775

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.01  Score=29.78  Aligned_cols=23  Identities=30%  Similarity=0.703  Sum_probs=19.7

Q ss_pred             cccc--cccccCChhhhhhhhhcCC
Q 045316          408 SCLI--CNKSFDKHQALGGHVASHN  430 (568)
Q Consensus       408 ~C~~--C~k~F~~~~~L~~H~~~H~  430 (568)
                      .|+.  |+|.|+..++++.|+.+|-
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4554  9999999999999998883

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.46  E-value=0.016  Score=30.56  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             CCccccccccccCCchhHHHHHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      ..|.|.-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            56999999999999999999986

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.039  Score=27.90  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             CccccccccccCCchhHHHHHHHhc
Q 045316           94 PRTCSECGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        94 ~~~C~~C~k~F~~~~~L~~H~~~H~  118 (568)
                      .|.|..|||..++...++.|+..-+
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             ceechhHHHHHhhccCceEEEeecc
Confidence            4889999999999999999987533

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.08  E-value=0.0094  Score=33.51  Aligned_cols=16  Identities=31%  Similarity=0.482  Sum_probs=11.9

Q ss_pred             cCCCCCceeCCccccc
Q 045316          476 GGGGSSEHKCNICNKI  491 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~  491 (568)
                      +|.|+-|-+|++|+..
T Consensus        14 i~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2          14 IHKGEDFEKCPICFRP   29 (36)
T ss_dssp             EEESSCCSBCTTTCCB
T ss_pred             EeeCCCCCcCCCCCCc
Confidence            4456678899999853

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.93  E-value=0.027  Score=29.65  Aligned_cols=23  Identities=30%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             CcccccccccccCChhhhhhhhh
Q 045316          405 QTYSCLICNKSFDKHQALGGHVA  427 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~  427 (568)
                      -.|.|.-||-+|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35999999999999999999974

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.85  E-value=0.0099  Score=33.71  Aligned_cols=16  Identities=13%  Similarity=0.374  Sum_probs=11.8

Q ss_pred             cCCCCCceeCCccccc
Q 045316          476 GGGGSSEHKCNICNKI  491 (568)
Q Consensus       476 ~H~~~k~f~C~~C~k~  491 (568)
                      ++.|+-|-.|++|+..
T Consensus        14 i~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2          14 TAVDEAPEYCPVCGAP   29 (37)
T ss_dssp             EEESCCCSBCTTTCCB
T ss_pred             EecCCCCCcCCCCCCc
Confidence            3445678999999864

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.85  E-value=0.029  Score=27.63  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=16.9

Q ss_pred             ccccc--cccccCCchhHHHHHHHhc
Q 045316           95 RTCSE--CGKQFTSGKALGGHKRACL  118 (568)
Q Consensus        95 ~~C~~--C~k~F~~~~~L~~H~~~H~  118 (568)
                      |.|.+  |++.|+.-..|+.|.-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45543  7778877777777777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.016  Score=37.96  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             CCCCCccccccccccCCchhHHHHHHH
Q 045316           90 VLGLPRTCSECGKQFTSGKALGGHKRA  116 (568)
Q Consensus        90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~  116 (568)
                      +|...|-|..|+|.|.+...|..|+++
T Consensus        11 pG~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          11 PGGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCEEecccccCccCCHHHHHHHHcc
Confidence            456779999999999999999999983

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.026  Score=36.90  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.8

Q ss_pred             CcccccccccccCChhhhhhhhhc
Q 045316          405 QTYSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       405 k~~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      ..|-|-.|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            459999999999999999999875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.64  E-value=0.1  Score=30.23  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             CCCCccccccccccCCchhHHHHHHHh
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      .+.|-.|++|+.......+|++|+..-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999853

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.046  Score=35.04  Aligned_cols=40  Identities=10%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             cCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchh
Q 045316          401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASA  443 (568)
Q Consensus       401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~  443 (568)
                      -+....|+|+.|+++|..-..++.   .-...--|.|..|+-.
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             cccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            344567999999999987766655   2233356999888743

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.055  Score=27.10  Aligned_cols=20  Identities=25%  Similarity=0.551  Sum_probs=17.9

Q ss_pred             cccccccCchhHHHHhhhCC
Q 045316          159 VCHQSFRSVKSLYGHMRKHP  178 (568)
Q Consensus       159 ~C~k~F~~~~~L~~H~~~H~  178 (568)
                      -|+|.|...+.++.|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            49999999999999998884

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.64  E-value=0.034  Score=29.68  Aligned_cols=27  Identities=19%  Similarity=0.619  Sum_probs=23.0

Q ss_pred             CCCceeCCccccccCcccccccc-cccC
Q 045316          479 GSSEHKCNICNKIFPTGQALGGH-KRCH  505 (568)
Q Consensus       479 ~~k~f~C~~C~k~F~~~~~L~~H-~r~H  505 (568)
                      |+..|.|.+|.+.|...+++-+| +..|
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            44579999999999999999999 4555

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.69  E-value=0.11  Score=27.65  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=24.0

Q ss_pred             CCCCccccccccccCCchhHHHHHHHh
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRAC  117 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H  117 (568)
                      ++..|.|.+|.+.|...+++-+|..+-
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            567899999999999999999998853

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.11  Score=26.28  Aligned_cols=25  Identities=32%  Similarity=0.655  Sum_probs=21.4

Q ss_pred             cccccccccccCChhhhhhhh-hcCC
Q 045316          406 TYSCLICNKSFDKHQALGGHV-ASHN  430 (568)
Q Consensus       406 ~~~C~~C~k~F~~~~~L~~H~-~~H~  430 (568)
                      .|.|..|||...+...++.|+ .-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            389999999999999999994 4454

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.90  E-value=0.23  Score=28.67  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CCCCcccccccccccCChhhhhhhhhc
Q 045316          402 STAQTYSCLICNKSFDKHQALGGHVAS  428 (568)
Q Consensus       402 ~~~k~~~C~~C~k~F~~~~~L~~H~~~  428 (568)
                      ..+.|-.|++|+.......+|++|+..
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999754

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.1  Score=33.34  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=24.9

Q ss_pred             CCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccc
Q 045316          430 NKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKI  491 (568)
Q Consensus       430 ~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~  491 (568)
                      +...-|+|+.|++.|..                       |..=...-...-.|.|.+|+-.
T Consensus        10 ~~~~~y~Cp~C~~~ys~-----------------------Lda~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTD-----------------------LEANQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEH-----------------------HHHHHHEETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcch-----------------------hhHHHhcCcCCCeEEecCCCCE
Confidence            34456999888777653                       3333333334458999999864

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.37  E-value=0.12  Score=25.89  Aligned_cols=19  Identities=16%  Similarity=0.183  Sum_probs=9.9

Q ss_pred             hhHhHhhcchHHHHHHHHH
Q 045316           63 EADDRQFMEEDLLLQREQE   81 (568)
Q Consensus        63 ~~C~k~f~~~~~L~~H~~~   81 (568)
                      +.|++.|.+...|..|.+.
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4455555555555555443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.25  Score=30.93  Aligned_cols=30  Identities=17%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             CCCCccccccccccCCchhHHHHHHHhccc
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKRACLQK  120 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  120 (568)
                      ....|.|..|...|.+...|..|+..|..+
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            356799999999999999999999999764

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.26  Score=26.54  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             CCCCccccccccccCCchhHHHHHH
Q 045316           91 LGLPRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        91 ~~~~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      ..+-|.|++|-|-.++...|.+|+.
T Consensus         4 lpkLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           4 LPKLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCeeeeehhhhhhhCCHHHHHHHHH
Confidence            3578999999999999999999997

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.85  E-value=0.3  Score=24.55  Aligned_cols=24  Identities=21%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             cccccc--cccccCChhhhhhhh-hcC
Q 045316          406 TYSCLI--CNKSFDKHQALGGHV-ASH  429 (568)
Q Consensus       406 ~~~C~~--C~k~F~~~~~L~~H~-~~H  429 (568)
                      .|+|+-  |+-+|..+.+++.|. |.|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            478864  999999999999995 445

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.60  E-value=0.54  Score=27.46  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             CCccccccccccCCchhHHHHHH
Q 045316           93 LPRTCSECGKQFTSGKALGGHKR  115 (568)
Q Consensus        93 ~~~~C~~C~k~F~~~~~L~~H~~  115 (568)
                      .+-.|.+|+..|+.+.+++.|+-
T Consensus         5 p~~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           5 TKPECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHHT
T ss_pred             CcccCcccceeeeeecchHhhhh
Confidence            35789999999999999999984