Citrus Sinensis ID: 045324

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----

MKRPLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWRRFHHDARSRLSSSSSSSGISMTLRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH

cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEEccHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHcccccccccccccHHHHHHcccEEEccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccEEccccccccccccccc

ccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHccccHHHHHHccccHHHHcccHccHHHHccccccccccHccccHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEcccEEcccccccccccccEEEEEccccccccHHHcccccEEEEEcHHHHHHHHHHcccEEccccccEEEEEEEcccHHHHHHHHHccccccccEcccHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHEEEEEcccccccccEEcccccccccccccHHHHHHHHHHHHcccEEcccccccccccEEEEc

MKRPLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIViveeqapvfnsTFLKLAAIDLGEEKSKQEIERLLegnfdspgrhrtfaSWRRFHHdarsrlsssssssgismtlrspMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIdkhngligsdkkyescavvgnsgillnsnygdlidsHEMVIRLNNARIERYEqhvgsktslsFVNSNILHLCarregcfchpygenvpmIMYICqpmhfldytrcngshkapllitdprFDMLCSRIVKYYSLKGFVEETGKSLEEwgsahegslfhySSGMQAVMLSLGIcdkvsifgfgksaaakhhyhtnqkaelhlHDYNAEYVFYhdlvknqravpfisdkfkippvvvhh

MKRPLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLGEEKSKQEIERLlegnfdspgrHRTFASWRRFHHdarsrlsssssssgismtlrSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDkhngligsdkKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPfisdkfkippvvvhh

MKRPLRPVFtillltilavtliFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWRRFHHDArsrlsssssssgismtlrsPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH

******PVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLG***************************W***********************LRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVV***

*****RP*FTILLLTILAVTLIFRIAV********************************************************************FHHDARSRLSSSSSSSGISMTLRSPMFYRYWLDFRRNLN**ARKKKFQSDVMNDLVRLVKHS***********KKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVH*

MKRPLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWRRFHH**************ISMTLRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH

***PLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLAAIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWRRFHHDARSRLSSSSSSSGISMTLRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH

iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		394	2.2.26 [Sep-21-2011]
P54751		337	CMP-N-acetylneuraminate-b	yes	no	0.545	0.637	0.288	5e-17
Q6KB59		340	CMP-N-acetylneuraminate-b	yes	no	0.581	0.673	0.272	1e-14
Q11201		340	CMP-N-acetylneuraminate-b	yes	no	0.596	0.691	0.256	3e-14
Q02745		343	CMP-N-acetylneuraminate-b	yes	no	0.522	0.600	0.263	9e-14
Q11200		342	CMP-N-acetylneuraminate-b	no	no	0.538	0.619	0.269	1e-12
P70277		373	Alpha-N-acetylgalactosami	no	no	0.545	0.576	0.273	4e-11
Q16842		350	CMP-N-acetylneuraminate-b	no	no	0.560	0.631	0.245	6e-11
Q6KB58		350	CMP-N-acetylneuraminate-b	no	no	0.527	0.594	0.248	1e-10
Q11205		350	CMP-N-acetylneuraminate-b	no	no	0.560	0.631	0.241	2e-10
Q11204		350	CMP-N-acetylneuraminate-b	no	no	0.560	0.631	0.241	2e-10

>sp\|P54751\|SIA4A_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Mus musculus GN=St3gal1 PE=2 SV=1	Back alignment and function desciption

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 38/253 (15%)

Query: 123 YRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDK--HNGLIGSDKKYESCAVVGNS 180
           YR+WL  +R      RK    SD + +L RLV  ++D   +  L+G  +    CAVVGNS
Sbjct: 95  YRWWLRLQRE-----RKPNNLSDTVKELFRLVPGNVDPMLNKRLVGCRR----CAVVGNS 145

Query: 181 GILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHP 240
           G L +S+YG  IDSH+ V+R+N A    +E  VGS+T+      ++++  + RE      
Sbjct: 146 GNLKDSSYGPEIDSHDFVLRMNKAPTVGFEADVGSRTT-----HHLVYPESFRE------ 194

Query: 241 YGENVPMIM--YICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEET 298
            GENV M++  +    + ++      G+     +   P+  +   +I+ Y+    F++  
Sbjct: 195 LGENVNMVLVPFKTTDLQWVISATTTGTITHTYVPVPPKIKVKQEKILIYHP--AFIKYV 252

Query: 299 GKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAK-HHYHTNQKA--- 354
               + W   H     + S+G+ +++ S+ ICD+V ++GFG  +    HHY  N  +   
Sbjct: 253 ---FDNWLQGHGR---YPSTGILSIIFSIHICDEVDLYGFGADSKGNWHHYWENNPSAGA 306

Query: 355 --ELHLHDYNAEY 365
             +  +HD + EY
Sbjct: 307 FRKTGVHDGDFEY 319

It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found on sugar chains O-linked to Thr or Ser and also as a terminal sequence on certain gangliosides. SIAT4A and SIAT4B sialylate the same acceptor substrates but exhibit different Km values.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4

>sp\|Q6KB59\|SIA4A_PANTR CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Pan troglodytes GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|Q11201\|SIA4A_HUMAN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Homo sapiens GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|Q02745\|SIA4A_PIG CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Sus scrofa GN=ST3GAL1 PE=1 SV=1	Back alignment and function description

>sp\|Q11200\|SIA4A_CHICK CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Gallus gallus GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|P70277\|SIA7B_MOUSE Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 OS=Mus musculus GN=St6galnac2 PE=2 SV=2	Back alignment and function description

>sp\|Q16842\|SIA4B_HUMAN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Homo sapiens GN=ST3GAL2 PE=2 SV=1	Back alignment and function description

>sp\|Q6KB58\|SIA4B_PANTR CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Pan troglodytes GN=ST3GAL2 PE=2 SV=1	Back alignment and function description

>sp\|Q11205\|SIA4B_RAT CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Rattus norvegicus GN=St3gal2 PE=2 SV=1	Back alignment and function description

>sp\|Q11204\|SIA4B_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Mus musculus GN=St3gal2 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
224080782		390	predicted protein [Populus trichocarpa]	0.987	0.997	0.691	1e-167
255565593		434	sialyltransferase, putative [Ricinus com	0.984	0.894	0.696	1e-165
225464982		389	PREDICTED: CMP-N-acetylneuraminate-beta-	0.982	0.994	0.694	1e-163
147767984		389	hypothetical protein VITISV_027339 [Viti	0.982	0.994	0.689	1e-161
70663492		384	sialyltransferase-like protein [Gossypiu	0.956	0.981	0.704	1e-159
449505424		388	PREDICTED: CMP-N-acetylneuraminate-beta-	0.984	1.0	0.644	1e-155
449463074		388	PREDICTED: alpha-N-acetylgalactosaminide	0.984	1.0	0.637	1e-154
357471707		421	Beta-galactoside alpha-2,6-sialyltransfe	0.967	0.904	0.645	1e-150
356539272		439	PREDICTED: CMP-N-acetylneuraminate-beta-	0.984	0.883	0.65	1e-145
356544718		445	PREDICTED: uncharacterized protein LOC10	0.987	0.874	0.620	1e-140

>gi\|224080782\|ref\|XP_002306228.1\| predicted protein [Populus trichocarpa] gi\|222849192\|gb\|EEE86739.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 273/395 (69%), Positives = 332/395 (84%), Gaps = 6/395 (1%)

Query: 1   MKRPLRPVFTILLLTILAVTLIFRIAVHGGGFFASLELENKIVIVEEQAPVFNSTFLKLA 60
           MKR +RP+F+ILLL + A+TL  RI +  G     +E E   +I++++ PVFNST LK +
Sbjct: 1   MKRSVRPLFSILLLVVFALTLSCRILIPRGDGVGFIEFEKPKLILQKKVPVFNSTLLKYS 60

Query: 61  AIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWRRF-HHDARSRLSSSSSSSGISMTLRS 119
           AID+GEE++K EIE LLEGNFDS GR+R+FA+WRRF HHD R+R     SS GI + LRS
Sbjct: 61  AIDIGEEQAKHEIEELLEGNFDSRGRYRSFATWRRFNHHDVRAR-----SSRGIPLMLRS 115

Query: 120 PMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGN 179
           P FYRYWLDFRR L+DWARKK++Q ++M++L+ L+K  ID+HNGL+GS+++Y SCAVVGN
Sbjct: 116 PQFYRYWLDFRRALHDWARKKRYQPEIMDELIGLLKGPIDRHNGLVGSERRYGSCAVVGN 175

Query: 180 SGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCH 239
           SGIL+   YG+LID HE+VIRLNNAR ERYE++VG+KT++SFVNSNILHLC RR+GCFCH
Sbjct: 176 SGILMQKEYGELIDRHEVVIRLNNARTERYERNVGAKTNISFVNSNILHLCGRRQGCFCH 235

Query: 240 PYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETG 299
           PYG NVPM+MYICQP HFLDYT CN SH APL++TDPRFD+LC+RIVKYYSLK FVEETG
Sbjct: 236 PYGANVPMVMYICQPAHFLDYTVCNSSHDAPLIVTDPRFDLLCARIVKYYSLKRFVEETG 295

Query: 300 KSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKAELHLH 359
           KSL+EWGSAH+GS+FHYSSGMQAVML++GICDKVSIFGFGKSA A+HHYHTNQKAEL LH
Sbjct: 296 KSLDEWGSAHDGSMFHYSSGMQAVMLAVGICDKVSIFGFGKSALARHHYHTNQKAELKLH 355

Query: 360 DYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH 394
           DY AEY  YHDLV N +AVPFI+DKFK P  V++ 
Sbjct: 356 DYEAEYDLYHDLVNNPQAVPFITDKFKFPAAVIYQ 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255565593\|ref\|XP_002523786.1\| sialyltransferase, putative [Ricinus communis] gi\|223536874\|gb\|EEF38512.1\| sialyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225464982\|ref\|XP_002277132.1\| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147767984\|emb\|CAN64919.1\| hypothetical protein VITISV_027339 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|70663492\|emb\|CAJ15145.1\| sialyltransferase-like protein [Gossypium raimondii]	Back alignment and taxonomy information

>gi\|449505424\|ref\|XP_004162465.1\| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449463074\|ref\|XP_004149259.1\| PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357471707\|ref\|XP_003606138.1\| Beta-galactoside alpha-2,6-sialyltransferase [Medicago truncatula] gi\|70663500\|emb\|CAJ15149.1\| sialyltransferase-like protein [Medicago truncatula] gi\|355507193\|gb\|AES88335.1\| Beta-galactoside alpha-2,6-sialyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356539272\|ref\|XP_003538123.1\| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356544718\|ref\|XP_003540794.1\| PREDICTED: uncharacterized protein LOC100816284 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
TAIR\|locus:2199993		398	AT1G08280 [Arabidopsis thalian	0.994	0.984	0.537	1.1e-112
RGD\|1309373		340	St3gal1 "ST3 beta-galactoside	0.220	0.255	0.418	9.7e-16
UNIPROTKB\|E9PSJ1		340	St3gal1 "Protein St3gal1" [Rat	0.220	0.255	0.418	9.7e-16
MGI\|MGI:98304		337	St3gal1 "ST3 beta-galactoside	0.220	0.258	0.418	1.2e-15
ZFIN\|ZDB-GENE-060321-1		321	st3gal1 "ST3 beta-galactoside	0.223	0.274	0.395	2.2e-14
ZFIN\|ZDB-GENE-060321-2		330	st3gal1l "ST3 beta-galactoside	0.228	0.272	0.378	1.4e-13
UNIPROTKB\|F1RRV7		343	ST3GAL1 "CMP-N-acetylneuramina	0.228	0.262	0.388	4.1e-13
UNIPROTKB\|Q02745		343	ST3GAL1 "CMP-N-acetylneuramina	0.228	0.262	0.388	4.1e-13
UNIPROTKB\|Q11201		340	ST3GAL1 "CMP-N-acetylneuramina	0.225	0.261	0.385	1.9e-12
ZFIN\|ZDB-GENE-120426-1		317	st3gal1l2 "ST3 beta-galactosid	0.233	0.290	0.36	1.9e-12

TAIR\|locus:2199993 AT1G08280 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 215/400 (53%), Positives = 272/400 (68%)

Query:     1 MKRPLRPVFXXXXXXXXXXXXXFRIAVHGGGF-FASL--ELENKIVIVEEQAPVFNSTFL 57
             MKR +RP+F              R+A+    F FAS   EL +  ++ E+   VFN T L
Sbjct:     1 MKRSVRPLFSALLFAFFAATLICRVAIRRSSFSFASAIAELGSSGLMTEDI--VFNETLL 58

Query:    58 KLAAIDLGEEKSKQEIERLLEGNFDSPGRHRTFASWR-RFHHDAXXXXXXXXXXXXXXXX 116
             + AAID GE   KQE++ + + +       R F+S   R                     
Sbjct:    59 EFAAIDPGEPNFKQEVDLISDYDHTRRSHRRHFSSMSIRPSEQQRRVSRDIASSSKFPVT 118

Query:   117 XXXPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIG-SDKKYESCA 175
                   YRYW +F+RNL  WAR++ ++ ++M DL+RLVK+ ID HNG++  S ++Y SCA
Sbjct:   119 LRSSQAYRYWSEFKRNLRLWARRRAYEPNIMLDLIRLVKNPIDVHNGVVSISSERYLSCA 178

Query:   176 VVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREG 235
             VVGNSG LLNS YGDLID HE+VIRLNNA+ ER+E+ VGSKT++SF+NSNILH C RRE 
Sbjct:   179 VVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVGSKTNISFINSNILHQCGRRES 238

Query:   236 CFCHPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFV 295
             C+CHPYGE VP++MYICQP+H LDYT C  SH+APLLITDPRFD++C+RIVKYYS+K F+
Sbjct:   239 CYCHPYGETVPIVMYICQPIHVLDYTLCKPSHRAPLLITDPRFDVMCARIVKYYSVKKFL 298

Query:   296 EET-GKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAKHHYHTNQKA 354
             EE   K   +W   HEGSLFHYSSGMQAVML++GIC+KVS+FGFGK  + KHHYHTNQKA
Sbjct:   299 EEKKAKGFVDWSKDHEGSLFHYSSGMQAVMLAVGICEKVSVFGFGKLNSTKHHYHTNQKA 358

Query:   355 ELHLHDYNAEYVFYHDLVKNQRAVPFISDKFKIPPVVVHH 394
             EL LHDY AEY  Y DL  + RA+PF+  +FKIP V V+H
Sbjct:   359 ELKLHDYEAEYRLYRDLENSPRAIPFLPKEFKIPLVQVYH 398

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008373 "sialyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0030173 "integral to Golgi membrane" evidence=IEA

RGD\|1309373 St3gal1 "ST3 beta-galactoside alpha-2,3-sialyltransferase 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSJ1 St3gal1 "Protein St3gal1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:98304 St3gal1 "ST3 beta-galactoside alpha-2,3-sialyltransferase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060321-1 st3gal1 "ST3 beta-galactoside alpha-2,3-sialyltransferase 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060321-2 st3gal1l "ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RRV7 ST3GAL1 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q02745 ST3GAL1 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q11201 ST3GAL1 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-120426-1 st3gal1l2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.99	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		394
pfam00777		268	pfam00777, Glyco_transf_29, Glycosyltransferase fa	4e-31

>gnl\|CDD\|216114 pfam00777, Glyco_transf_29, Glycosyltransferase family 29 (sialyltransferase)	Back alignment and domain information

 Score =  119 bits (300), Expect = 4e-31
 Identities = 67/265 (25%), Positives = 94/265 (35%), Gaps = 40/265 (15%)

Query: 123 YRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGI 182
           Y+ W             +  +  +   L  L+               +   CAVVGN GI
Sbjct: 20  YKLWYPLGL--------RGSEPLISEALSSLLPKDSPFLLK---QSGRCRRCAVVGNGGI 68

Query: 183 LLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYG 242
           L NS+ G  IDSH+ VIR N A  + YE+ VGSKT+L   N                 Y 
Sbjct: 69  LKNSSLGKEIDSHDFVIRCNLAPTKGYEKDVGSKTTLRTFNPESAP----------KSYQ 118

Query: 243 ENVPMIMYICQPMHFLD-------YTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLK-GF 294
           E      ++  P   LD        T+  G              +      K   L   F
Sbjct: 119 ELDRNTFFVLVPFKGLDLLWLPAFLTK--GLGTYRSFWKYVALRIPLDP-QKVRILNPEF 175

Query: 295 VEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFG--KSAAAKHHYHTNQ 352
           +        E      G     S+G+ A+ L+L +CD+V ++GFG        HHY+ N 
Sbjct: 176 LRYVANFWLEKPEGIHGK--RPSTGLLALTLALHLCDEVHLYGFGPFDRKPIPHHYYDNV 233

Query: 353 K----AELHLHDYNAEYVFYHDLVK 373
           K         HD   E++    L K
Sbjct: 234 KPKAMTFGAYHDMPYEFLLLKRLHK 258

Members of this family belong to glycosyltransferase family 29. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		394
PF00777		266	Glyco_transf_29: Glycosyltransferase family 29 (si	100.0
KOG2692		376	consensus Sialyltransferase [Carbohydrate transpor	100.0
PF06002		291	CST-I: Alpha-2,3-sialyltransferase (CST-I); InterP	94.2

>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

Probab=100.00  E-value=5e-52  Score=401.43  Aligned_cols=215  Identities=28%  Similarity=0.407  Sum_probs=115.1

Q ss_pred             hHHHHHHHHhccCCccccCCCCCCCCCcceEEEEcCCCcCCCCCCCccccccchhhhcCcccccccccccCCCccccccc
Q 045324          144 SDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVN  223 (394)
Q Consensus       144 p~v~~~l~~~i~~p~~~~~~~~~~~~~c~rCAVVGNSGIL~gS~~G~eIDshD~VIR~N~AP~~GfE~DVGsKTtl~~~n  223 (394)
                      ..+.+.+..++|.+.....  .....+|++||||||||||+||+||+|||+||||||||+||++|||+|||+|||++++|
T Consensus        33 ~~i~~~l~~l~~~~~p~~~--~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~~gfe~DVG~kT~~~~~n  110 (266)
T PF00777_consen   33 FKISKELYKLLPESSPFSL--KHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPVKGFEKDVGSKTTLRTMN  110 (266)
T ss_dssp             --HHHHHHHHTTT-S-S-----TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT---TT-HHHH-S--SEEEEB
T ss_pred             hhHHHHHHHhCcccCcccc--ccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccccccccccCccccccccC
Confidence            4567888888886432111  11234499999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhccCCccccCCCCCCCeEEEEecccchhhhhhhcCC----------CCCC---ceecCCccchhhhhhhhhcc
Q 045324          224 SNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGS----------HKAP---LLITDPRFDMLCSRIVKYYS  290 (394)
Q Consensus       224 ~sil~~~~~~~~~~~~~y~~~v~~vl~i~~P~~~ld~~~~~~~----------~k~~---~~i~~p~f~~l~~ri~~y~~  290 (394)
                      ++++....       ..+.++..+   ...+.+..++.|....          +...   ......++.+++|.++++  
T Consensus       111 ~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--  178 (266)
T PF00777_consen  111 PSSLQRRY-------NLLDKDTFL---VLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRY--  178 (266)
T ss_dssp             TTB----------------TT-EE---EE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHH--
T ss_pred             hhHhhhhc-------cccccccce---eccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhh--
Confidence            99985421       112333322   2234544444443110          0000   001112333445544433  


Q ss_pred             cchhhhhhhhhhhhhccccCCCccccChHHHHHHHHhhcCCeEEEeeeec--CCCCcCcccCCCCCC----CCCCChHHH
Q 045324          291 LKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGK--SAAAKHHYHTNQKAE----LHLHDYNAE  364 (394)
Q Consensus       291 ~~~Fl~~t~~~~~~W~~~~~~~~~~pSTG~lav~lAL~lCDeV~vYGFg~--~~~~~~HYye~~~~~----~~~Hd~~~E  364 (394)
                                ....|..... ...+||||++++++||++||||+||||||  ....+|||||+.+..    ...|+|+.|
T Consensus       179 ----------~~~~~~~~~~-~~~~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E  247 (266)
T PF00777_consen  179 ----------IWRFWLRRGG-RGNRPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAE  247 (266)
T ss_dssp             ----------HHHHTSTT----SSS--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHH
T ss_pred             ----------HHHHhhhhhc-cccCCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHH
Confidence                      2345654322 45689999999999999999999999999  346899999996532    346999999


Q ss_pred             HHHHHHHHHcCCCcccccCC
Q 045324          365 YVFYHDLVKNQRAVPFISDK  384 (394)
Q Consensus       365 ~~~l~~L~~~~~~~~fit~k  384 (394)
                      ++++++||+. ++++++++|
T Consensus       248 ~~~~~~L~~~-Gvi~l~~g~  266 (266)
T PF00777_consen  248 FRLLKRLHKQ-GVIKLHTGK  266 (266)
T ss_dssp             HHHHHHHHHT-TSSEEE---
T ss_pred             HHHHHHHHHC-CCeEEecCC
Confidence            9999999988 888988876

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.

>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		394
2wml_A		298	Crystal Structure Of A Mammalian Sialyltransferase		2e-14
2wnb_A		298	Crystal Structure Of A Mammalian Sialyltransferase		4e-14

>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase Length = 298

Back alignment and structure

Iteration: 1

Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 29/235 (12%) Query: 123 YRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDK--HNGLIGSDKKYESCAVVGNS 180 Y++WL +R +K +D + +L ++V ++D L+ + CAVVGNS Sbjct: 56 YKWWLRLQRE-----KKPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRR----CAVVGNS 106 Query: 181 GILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHP 240 G L S YG IDSH+ V+R N A E +E VGSKT+ FV A+ P Sbjct: 107 GNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQEVSXILVP 166 Query: 241 YGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGK 300 + + ++ G + + + +I+ Y+ F++ Sbjct: 167 FK---------TTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHP--AFIKYV-- 213 Query: 301 SLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAK-HHYHTNQKA 354 + W H + S+G+ +V+ SL ICD+V ++GFG + HHY N + Sbjct: 214 -FDRWLQGHGR---YPSTGILSVIFSLHICDEVDLYGFGADSKGNWHHYWENNPS 264

PyMOL of 2wml

>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp Length = 298

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		394
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	3e-35
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A Length = 298	Back alignment and structure

 Score =  130 bits (328), Expect = 3e-35
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 30/262 (11%)

Query: 119 SPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVG 178
               Y++WL  +R             D + +L ++V  ++D              CAVVG
Sbjct: 52  EEDTYKWWLRLQREKQPNNLN-----DTIRELFQVVPGNVDPLLEK--RLVSCRRCAVVG 104

Query: 179 NSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFC 238
           NSG L  S YG  IDSH+ V+R+N A  E +E  VGSKT+  FV        A+      
Sbjct: 105 NSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFRELAQEVSMIL 164

Query: 239 HPYGENVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEET 298
            P+      + ++         +       A + +   +  +     +KY          
Sbjct: 165 VPFKTT--DLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKY---------- 212

Query: 299 GKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAAAK-HHYHTNQKAEL- 356
                 +    +G   + S+G+ +V+ SL ICD+V ++GFG  +    HHY  N  +   
Sbjct: 213 -----VFDRWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGADSKGNWHHYWENNPSAGA 267

Query: 357 ----HLHDYNAEYVFYHDLVKN 374
                +HD + E      L   
Sbjct: 268 FRKTGVHDGDFESNVTTILASI 289

PyMOL of 2wnf

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		394
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	100.0
1ro7_A		259	Alpha-2,3/8-sialyltransferase; mixed alpha/beta, r	99.83
2p2v_A		288	Alpha-2,3-sialyltransferase; mixed alpha-beta; HET	99.82
2wqq_A		291	Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glyc	99.78

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A	Back alignment and structure

Probab=100.00  E-value=4.8e-55  Score=428.42  Aligned_cols=232  Identities=30%  Similarity=0.484  Sum_probs=169.3

Q ss_pred             ccCCchhHHhHHHhhhhchhhHhhhcchhHHHHHHHHhccCCccccCCCCCCCCCcceEEEEcCCCcCCCCCCCcccccc
Q 045324          116 TLRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSH  195 (394)
Q Consensus       116 ~l~~~~~~~~Wl~~~~~~~~W~rl~~~~p~v~~~l~~~i~~p~~~~~~~~~~~~~c~rCAVVGNSGIL~gS~~G~eIDsh  195 (394)
                      ..+++++++||+.++...+.     .....+++++++++|.+.+..  ......+|++||||||||||+||+||+|||+|
T Consensus        49 ~~~~~~~~~~w~~l~~~~~~-----~~~~~v~~~l~~~lP~~~~~~--~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~  121 (298)
T 2wnf_A           49 AHLEEDTYKWWLRLQREKQP-----NNLNDTIRELFQVVPGNVDPL--LEKRLVSCRRCAVVGNSGNLKESYYGPQIDSH  121 (298)
T ss_dssp             CCCCHHHHHHHHHHHCCSSC-----CCHHHHHHHHTTTSCSCCCTT--TTGGGCSCCEEEEECCBGGGTTCCCHHHHHTS
T ss_pred             CCCCHHHHHHHHhccccccc-----ccHHHHHHHHHHhCCCccccc--cccccCCCCeEEEECCccccCCCCccccccch
Confidence            34567889999999987542     234568899999998864311  11234799999999999999999999999999


Q ss_pred             chhhhcCcccccccccccCCCcccccccchhhhhhhccCCccccCCCCCCCeEEEEecccchhhhhhhcCC---------
Q 045324          196 EMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGS---------  266 (394)
Q Consensus       196 D~VIR~N~AP~~GfE~DVGsKTtl~~~n~sil~~~~~~~~~~~~~y~~~v~~vl~i~~P~~~ld~~~~~~~---------  266 (394)
                      |||||||+|||+|||+|||+|||++++|++++.           .+++++.++   ..|++..++.|....         
T Consensus       122 D~ViR~N~aP~~gye~DVG~KTt~~~~n~~s~~-----------~~~~~~~~v---~~~~~~~~~~w~~~~~~~~~~~~~  187 (298)
T 2wnf_A          122 DFVLRMNKAPTEGFEADVGSKTTHHFVYPESFR-----------ELAQEVSMI---LVPFKTTDLEWVISATTTGRISHT  187 (298)
T ss_dssp             SEEEEETTCCCTTCHHHHCSCCSEEEEBTTBCC-----------CCCTTCEEE---ECCSSHHHHHHHHHHTTTCCCCBS
T ss_pred             hheeccCcCCcCcccccCccCceeEEecccccc-----------ccCCCceEE---EeecCccchhhhhHhhcCCcccch
Confidence            999999999999999999999999999988642           345554444   357776666553110         


Q ss_pred             CC-CCcee--cCCccchhhhhhhhhcccchhhhhhhhhhhhhccccCCCccccChHHHHHHHHhhcCCeEEEeeeecCCC
Q 045324          267 HK-APLLI--TDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAA  343 (394)
Q Consensus       267 ~k-~~~~i--~~p~f~~l~~ri~~y~~~~~Fl~~t~~~~~~W~~~~~~~~~~pSTG~lav~lAL~lCDeV~vYGFg~~~~  343 (394)
                      +. .+..+  ....+.+++|++++|            ..+.|...+   ..+||||++++++||++||||+||||+++..
T Consensus       188 ~~~~~~~~~~~~~~v~i~~P~~~~~------------~~~~w~~~~---~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~~  252 (298)
T 2wnf_A          188 YVPVPAKIKVKKEKILIYHPAFIKY------------VFDRWLQGH---GRYPSTGILSVIFSLHICDEVDLYGFGADSK  252 (298)
T ss_dssp             SSBCCSCCCCCGGGEEEBCHHHHHH------------HHHHTSTTC---SSSCCHHHHHHHHHHHHCSEEEEESCSCCTT
T ss_pred             hhhhhHHhhccCCeEEEeCHHHHHH------------HHHHHHHhC---CCCCchhHHHHHHHHHhCCEEEEeeeccCCC
Confidence            00 00000  011233445555544            234576544   2479999999999999999999999999864


Q ss_pred             -CcCcccCCCCC-----CCCCCChHHHHHHHHHHHHcCCCcccccCC
Q 045324          344 -AKHHYHTNQKA-----ELHLHDYNAEYVFYHDLVKNQRAVPFISDK  384 (394)
Q Consensus       344 -~~~HYye~~~~-----~~~~Hd~~~E~~~l~~L~~~~~~~~fit~k  384 (394)
                       .+|||||+.+.     ..+.|+|+.|++++++||++ +.+++.+|+
T Consensus       253 ~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~-G~i~l~~g~  298 (298)
T 2wnf_A          253 GNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASI-NKIRIFKGR  298 (298)
T ss_dssp             SCCCBTTC-----------CCSCHHHHHHHHHHHHHT-TSSEEECCC
T ss_pred             CCceecccCccccccccCCCCCCcHHHHHHHHHHHHC-CCEEEEeCC
Confidence             47999998754     24689999999999999988 788887764

PyMOL of 2wnf

>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*	Back alignment and structure

>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A	Back alignment and structure

>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		394
d1ro7a_		258	Alpha-2,3/8-sialyltransferase CstII {Campylobacter	98.23

>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Alpha-2,3/8-sialyltransferase CstII
superfamily: Alpha-2,3/8-sialyltransferase CstII
family: Alpha-2,3/8-sialyltransferase CstII
domain: Alpha-2,3/8-sialyltransferase CstII
species: Campylobacter jejuni [TaxId: 197]

Probab=98.23  E-value=7.8e-07  Score=82.78  Aligned_cols=187  Identities=14%  Similarity=0.092  Sum_probs=100.7

Q ss_pred             ceEEEEcCCCcCCCCCCCccccccchhhhcCcccccccccccCCCcccccccchhhhhhhccCCccccCCCCCCCeEEEE
Q 045324          172 ESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYI  251 (394)
Q Consensus       172 ~rCAVVGNSGIL~gS~~G~eIDshD~VIR~N~AP~~GfE~DVGsKTtl~~~n~sil~~~~~~~~~~~~~y~~~v~~vl~i  251 (394)
                      ++|.|+|||.+|++..++..+++.| |||||.+-.. .+.++|.++.+.++++.............  ...+......+.
T Consensus         2 Kr~~IlGNGPSLk~iDl~~l~kd~~-vfgcN~fY~~-d~~~~~~~~d~v~~d~~v~~~~y~~~~~i--~~~~~~~~~~~~   77 (258)
T d1ro7a_           2 KKVIIAGNGPSLKEIDYSRLPNDFD-VFRCNQFYFE-DKYYLGKKCKAVFYNPSLFFEQYYTLKHL--IQNQEYETELIM   77 (258)
T ss_dssp             CEEEEECCSGGGGCCCTTSCCSSEE-EEEETTGGGC-SEETTCSEEEEEEECGGGHHHHHHHHHHH--HHTTSCEEEEEE
T ss_pred             ceEEEEecChhcccCCHhHccCCCe-EEEEcchhhc-chhhcCCcceEEEcccceeeccccceeee--eccchhhhhhhh
Confidence            5899999999999999999989887 9999998765 35679999999998887654321100000  000010111111


Q ss_pred             ecccchhhhhhhcCCCC-CCceecCCccchhhhhhhhhcccchhhhhhhhhhhhhccccCCCccccChHHHHHHHHhh-c
Q 045324          252 CQPMHFLDYTRCNGSHK-APLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLG-I  329 (394)
Q Consensus       252 ~~P~~~ld~~~~~~~~k-~~~~i~~p~f~~l~~ri~~y~~~~~Fl~~t~~~~~~W~~~~~~~~~~pSTG~lav~lAL~-l  329 (394)
                      +..+............. .+. ..+....  . ...+.+  ..+..      ..|.... .-..++|||..|+.+|+. -
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~--~~~~~------~~~~~~~-~~~~~~s~g~~alqiA~~LG  144 (258)
T d1ro7a_          78 CSNYNQAHLENENFVKTFYDY-FPDAHLG--Y-DFFKQL--KDFNA------YFKFHEI-YFNQRITSGVYMCAVAIALG  144 (258)
T ss_dssp             ECCCSCTTTSCHHHHHTHHHH-STTCEET--H-HHHTTS--HHHHH------HHHHHHH-HHCCCCCHHHHHHHHHHHHT
T ss_pred             cccccccchhhhhhhhhhhcc-ccccccc--e-Eccccc--CCccc------ceeeccc-cccCCCCHHHHHHHHHHHcC
Confidence            11110000000000000 000 0000000  0 000000  00100      0010000 001257999999999997 5


Q ss_pred             CCeEEEeeeecCCCCcCcccCCCCC--------------CCCCCChHHHHHHHHHHHHcC
Q 045324          330 CDKVSIFGFGKSAAAKHHYHTNQKA--------------ELHLHDYNAEYVFYHDLVKNQ  375 (394)
Q Consensus       330 CDeV~vYGFg~~~~~~~HYye~~~~--------------~~~~Hd~~~E~~~l~~L~~~~  375 (394)
                      +++|.+.|+...+...-|+||.+++              ....|++..-...+.-|.+..
T Consensus       145 fKeIYLlG~D~y~~~~~~~ye~~~~n~~~l~~~~~~~~~~~~~h~~~~d~~~l~~l~~~~  204 (258)
T d1ro7a_         145 YKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTY  204 (258)
T ss_dssp             CCEEEEESCCTTTTSSCCSSCCCCHHHHHHCGGGGSSCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeccCCCCCCccccCcccchhhhCcchhhccCcccchhHHHHHHHHHHHHHhc
Confidence            9999999998655555688887642              113588888888877777753

PyMOL of d1ro7a_