Citrus Sinensis ID: 045346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHcHHcccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHccccHHHHccccccccHHHHHHHcccHHHHHHHHHHccHHHHHcccccccHHHHHHHcccHHHHHHHHHccccHHHHHcccccccccHHHHHHHcccHHHHHHHHHccccHccccccccccHHHHHHcccHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
DAALRKLVEEKKKMIKetdqygwtpihYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNllennplarslinegdamentplhVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKdfgrgqysngvickSELEYIErqnddtkddykdtRESHLVVAALIATVAFAAAftipggyrsengTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Flexible Loop (DISEMBL)
DAALRKLVEEKKKmiketdqygwtPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTqanydavnkrnVSVRHIFSYGYPKLKEEIQKLSKdfgrgqysngvickseleYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Low Complexity Region (SEG)
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHlvvaaliatvafaaaftiPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Disordered region (IsUnstruct)
****************ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIE**************ESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIM**
Disordered Region (DISOPRED)
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDD**DDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Disordered Region (DISEMBL)
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Disordered Region (DISPRO)
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG*ICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.880	0.525	0.263	5e-17
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.928	0.624	0.257	3e-13
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.761	0.503	0.226	8e-12
Q502K3	1071	Serine/threonine-protein	yes	no	0.403	0.132	0.333	6e-08
A2RT91	1465	Ankyrin and armadillo rep	yes	no	0.272	0.065	0.336	4e-07
Q5ZLC8	1073	Serine/threonine-protein	yes	no	0.309	0.101	0.336	8e-07
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.332	0.082	0.336	9e-07
Q54HW1	232	26S proteasome non-ATPase	no	no	0.349	0.530	0.305	9e-07
P23631	1401	Alpha-latrotoxin-Lt1a OS=	N/A	no	0.420	0.105	0.291	1e-06
G0LXV8	1351	Alpha-latrotoxin-Lh1a (Fr	N/A	no	0.420	0.109	0.291	1e-06

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 161/365 (44%), Gaps = 55/365 (15%)

Query: 24  TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
           TP+  AA  G+  +VN LL    +   I+  + K  ALHLAA +GH   ++ +LS  P  
Sbjct: 200 TPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK-NALHLAARQGHVEVIKALLSKDPQL 258

Query: 84  YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF 143
              +D KG   LH A+     E +  LL+ +P   +++ + D   NT LHV    +  E 
Sbjct: 259 ARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---AIVMQPDKSCNTALHVATRKKRAEI 315

Query: 144 HAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG------------- 190
             +++     N + + + + +   I + G P L EE   + +   R              
Sbjct: 316 VELLLSLPDTNANTLTRDHKTALDI-AEGLP-LSEESSYIKECLARSGALRANELNQPRD 373

Query: 191 -------QYSNGVICKSELEYIERQNDDTKDDYKDTRESH-----------LVVAALIAT 232
                  Q  N V    +LE  +R N +  +  K+ R+ H            VVA L AT
Sbjct: 374 ELRSTVTQIKNDVHI--QLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFAT 431

Query: 233 VAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHF-LMSLKIEAT 291
           VAFAA FT+PGG  + +G+A++    +F+ F + +++A+  SL+ V     L+  + +A 
Sbjct: 432 VAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAE 490

Query: 292 KDFDGALFGASLWLTLFSMGAMVIAFVTGTY----------AMLVPSLGLAIITCLIGLS 341
           K     +    +WL         +AF+  +Y          A LV  +G  I+  ++G  
Sbjct: 491 KRV-VEVINKLMWLASMCTS---VAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTM 546

Query: 342 FFLLV 346
            + +V
Sbjct: 547 TYYVV 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 149/376 (39%), Gaps = 49/376 (13%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D    T +H AA  G+  +V  LL+     + IA  + K TALH AA  GH   V+ ++ 
Sbjct: 122 DSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHSAARNGHTVIVKKLIE 180

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV 138
                   VD KG   LH A+     E +  L+E +    SLIN  D   NTPLH+    
Sbjct: 181 KKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG---SLINSADNKGNTPLHIAVRK 237

Query: 139 RPKEFHAVMIKKTQANYDAVNKRNVSVRHIF----------------------------- 169
              E    ++K  + +  AVNK   +   I                              
Sbjct: 238 NRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKV 297

Query: 170 --SYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYI-ERQNDDTKDDYKDTRESHLVV 226
             S    KLKE + ++  +    Q       + E++ I +R N    +   +   S  +V
Sbjct: 298 EPSGSSRKLKETVSEIGHEV-HTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLV 356

Query: 227 AALIATVAFAAAFTIPGGYRSEN---------GTAILRRNKAFQAFIVADSIAMVFSLSA 277
           A LIATVAFAA F +PG Y  +          G A       F  F+V DS A+  SL+ 
Sbjct: 357 AILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAV 416

Query: 278 VFTHFLMSLKIEATKDFDGALFGASLWLT--LFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
           V     + +     K    A+    +W+   + S+  + ++FV         ++G+  I 
Sbjct: 417 VVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIG 476

Query: 336 CLIGLSFF-LLVIWIM 350
            LI +S    +  W++
Sbjct: 477 ALIMVSTLGTMCYWVI 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 36/304 (11%)

Query: 13  KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHART 72
           ++ +  D    +P++ AA   +  +VN +L++D S + I  K+ K T+LH A   G  R 
Sbjct: 119 ELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGK-TSLHTAGRYGLLRI 177

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
           V+ ++        + D KG   LH A+    +E +  +L+ +    +++NE D   NT L
Sbjct: 178 VKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQAD---YTILNERDRKGNTAL 234

Query: 133 HVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-----FSYGYPKLKEEIQKLSKDF 187
           H+       +  ++++  T    +A+N +  +   +     +S    ++ E + +     
Sbjct: 235 HIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKH 294

Query: 188 GR--GQYSNGVICKSELEYIER-------QNDDT---------------KDDYKDTRESH 223
           GR  G+       K  +  I+        QN+ T               ++  ++T  S 
Sbjct: 295 GRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSI 354

Query: 224 LVVAALIATVAFAAAFTIPGGYRSEN---GTAILRRNKAFQAFIVADSIAMVFSLSAVFT 280
            VVA L A++AF A F +PG Y +E    G A +     F+ F + ++ ++  SL+ V  
Sbjct: 355 TVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVV 414

Query: 281 HFLM 284
              +
Sbjct: 415 QITL 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D+ G  P+H+AA  G   MV LLL    + S    KDR+   +H AA  GH   V+ ++S
Sbjct: 137 DRTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQ--PIHWAAYLGHLEVVKLLVS 194

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV 138
              D     D +G+  LH A  S  V+ +  LL N     + I+E +A  NT LHV A  
Sbjct: 195 QGSD-KSCKDKRGYTPLHAAAASGHVDVVKYLLRNG----AEIDEPNAFGNTALHV-ACY 248

Query: 139 RPKEFHAVMIKKTQANYDAVNKRNVSVRHI 168
             +E  A  +    AN +  N R  +  H+
Sbjct: 249 TGQEAVANELVNRGANVNQPNHRGYTPLHL 278

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|A2RT91|ANKAR_MOUSE Ankyrin and armadillo repeat-containing protein OS=Mus musculus GN=Ankar PE=2 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNI-ANKDRKMTALHLAAGRGHARTVETI 76
           T++ GW PIH+AA+Y N  ++  L   D S     A  + + T L LAA  G   T++ +
Sbjct: 612 TEKRGWMPIHFAAFYDNICILIALCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYL 671

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENN 114
            SL  + +   D KG N +H ++++F  E L  ++E N
Sbjct: 672 FSLGAN-WRKTDTKGNNIIHLSVLAFHTEVLKYIIELN 708

Mus musculus (taxid: 10090)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D+ G T +H+A + G+  MVNLLL    S S    KDR+   +H AA  GH   ++ +++
Sbjct: 137 DRTGRTALHHAVHSGHLEMVNLLLNKGASLSTCDKKDRQ--PIHWAAFLGHLEVLKLLVA 194

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
              D     D KG+  LH A  S ++E + +LL         I+E ++  NT LH+
Sbjct: 195 RGADVM-CKDKKGYTLLHTAAASGQIEVVRHLLR----LGVEIDEPNSFGNTALHI 245

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 56/122 (45%)

Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
           ++ KL+  K   + + D  G TP+HYAA  GN  MV+ LL       N A K++K T LH
Sbjct: 649 SVSKLLAGKGAYLNDGDANGMTPLHYAAMTGNLEMVDFLLNQQYININAATKEKKWTPLH 708

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
           LA         E +LS       L  N G N LH A  +   + +  LL  N     L +
Sbjct: 709 LAILFKKNDVAERLLSDENLNIRLETNGGINPLHLASATGNKQLVIELLAKNADVTRLTS 768

Query: 123 EG 124
           +G
Sbjct: 769 KG 770

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D  GWTP+  A   G+  MV LLLE     + +   D K T LH A+ +G +  V+ +L+
Sbjct: 77  DDGGWTPLTSATSAGHTHMVKLLLEFGADPNTV--NDSKRTPLHYASSKGRSDIVDLLLT 134

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV 138
                    D+ G   +H A  +  V  +  LL+      S  NEGD    TPLH+ A  
Sbjct: 135 HG--AKNRKDDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGD----TPLHIAAEY 188

Query: 139 RPKEFHAVMIK 149
             ++    ++K
Sbjct: 189 NHEDVVECLLK 199

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|P23631|LATA_LATTR Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRG 68
           K   + + D+ G+TPIH AA  GN G+VNLL+   Q   +I +K      T LHLAA RG
Sbjct: 515 KSTELNQPDKKGYTPIHVAADSGNAGIVNLLI---QRGVSINSKTYHFLQTPLHLAAQRG 571

Query: 69  HARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR--VEQLTNLLENNPLARSLINEGDA 126
              T + ++          D  G+  LHYA+      +E   N +  +  A+S  N G  
Sbjct: 572 FVTTFQRLMESPEININERDKDGFTPLHYAIRGGERILEAFLNQISIDVNAKS--NTG-- 627

Query: 127 MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRH 167
              TP H+          + ++   + + +AV++ N++  H
Sbjct: 628 --LTPFHLAIIKNDWPVASTLLGSKKVDINAVDENNITALH 666

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|G0LXV8|LATA_LATHA Alpha-latrotoxin-Lh1a (Fragment) OS=Latrodectus hasseltii PE=1 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRG 68
           K   + + D+ G+TPIH AA  GN G+VNLL+   Q   +I +K      T LHLAA RG
Sbjct: 503 KSNELNQPDKKGYTPIHVAADSGNAGIVNLLI---QRGVSINSKTYNFLQTPLHLAAQRG 559

Query: 69  HARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR--VEQLTNLLENNPLARSLINEGDA 126
              T + ++          D  G+  LHYA+      +E   N +  +  A+S  N+G  
Sbjct: 560 FVTTFQRLMESPEININERDKDGFTPLHYAVRGGERILEAFINQIRIDLNAKS--NKG-- 615

Query: 127 MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRH 167
              TP H+          + ++   + + +AV++ N++  H
Sbjct: 616 --LTPFHLAIIKDDWPVASTLLGSKKVDVNAVDENNMTALH 654

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). Induces rapid muscle contracture and loss of twitch tension when added to the isolated and indirectly stimulated chick biventer cervicis nerve-muscle preparation.

Latrodectus hasseltii (taxid: 256736)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224127106	575	predicted protein [Populus trichocarpa]	0.954	0.584	0.444	9e-74
224127102	434	predicted protein [Populus trichocarpa]	0.946	0.767	0.447	3e-72
255585399	575	ankyrin repeat-containing protein, putat	0.926	0.566	0.426	1e-66
296085927	611	unnamed protein product [Vitis vinifera]	0.943	0.543	0.414	2e-59
255551947	582	ankyrin repeat-containing protein, putat	0.815	0.493	0.388	5e-58
359478095	720	PREDICTED: ankyrin repeat-containing pro	0.917	0.448	0.413	1e-56
224126975	381	predicted protein [Populus trichocarpa]	0.920	0.850	0.389	1e-54
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.951	0.525	0.394	3e-54
298205151	1006	unnamed protein product [Vitis vinifera]	0.960	0.335	0.394	8e-54
359477893	617	PREDICTED: ankyrin repeat-containing pro	0.943	0.538	0.387	1e-53

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 159/358 (44%), Positives = 225/358 (62%), Gaps = 22/358 (6%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAY--YGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
           RK++E++KK+ K TD+ GW+P+HYA+Y  + N  +V +LLE D S ++IA  ++K TALH
Sbjct: 211 RKMLEKEKKLTKTTDENGWSPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALH 270

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
           +AA +GH   ++ I+S  P C +LVDN+GWN LHYA+ S   +     L+   LAR L  
Sbjct: 271 IAAIQGHVDAMKEIVSRCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELAR-LQT 329

Query: 123 EGDAMENTPLHVLAAV--RPKEFHAVMIKKTQA----NYDAVNKRNVSVRHIFSYGYPKL 176
           E D   NTP H++AA+     E+  V+   +          +NKR +SV  I+   + ++
Sbjct: 330 EKDDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEI 389

Query: 177 KEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFA 236
           ++EI +   D G G        +        +N + +D     RESHLVVAALIATV FA
Sbjct: 390 QKEILESLNDGGSGPLG-----RRRKVLRRGRNKEGEDALSKARESHLVVAALIATVTFA 444

Query: 237 AAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSL----KIEATK 292
           AAFT+PGGY+S+ GTAIL +  AF  F+V+D+++MV S+SAVF HFL+SL    ++E +K
Sbjct: 445 AAFTLPGGYKSDRGTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEMEKSK 504

Query: 293 DFDG----ALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLV 346
           D        LFG +   T+  MG M+IAF+TGTYA+L PSLGLAI +CLIGLSFF +V
Sbjct: 505 DISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFFIV 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127102|ref|XP_002329396.1| predicted protein [Populus trichocarpa] gi|222870446|gb|EEF07577.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/364 (44%), Positives = 227/364 (62%), Gaps = 31/364 (8%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYG-NYGMVNLLLEIDQSASNIANKDRKMTALHL 63
           RKL+E++KK+ K TDQ GW+P+HYAAYY  +  +V++LLE D SA+ IA  ++K TALH+
Sbjct: 49  RKLLEKEKKLTKTTDQDGWSPLHYAAYYDRSTCIVHVLLENDASAAYIAETEKKRTALHI 108

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
           AA +GH   ++ I+S  P C ELVDN+GWN LHYA+ +   E     +E   LAR L  +
Sbjct: 109 AAIQGHVNAMKEIVSRRPACCELVDNRGWNALHYAVATKDREVFKECMEIPELAR-LKTK 167

Query: 124 GDAMENTPLHVLAAV--RPKEFHAVMIKKT--------QANYD----AVNKRNVSVRHIF 169
            D   NTP H++AA+    K++  V+ K          ++ Y      +N++ +SV  I+
Sbjct: 168 KDDKGNTPFHLIAALAHEKKQWRRVLYKYCYNKRVVCGKSPYKREVCGLNEQKLSVNDIY 227

Query: 170 SYGYPKLKEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAAL 229
              + ++++EI K  +D G G   +  + K        QN+  K+     RESHLVVAAL
Sbjct: 228 EGKFGEIQKEILKSLEDVGNGPLGSRKVLKG-------QNEGEKEALSRARESHLVVAAL 280

Query: 230 IATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSL--K 287
           IATV FAAAFT+PGGY+++ GTAIL +  AF  F+++D+++MV S+ AVF HFL+SL   
Sbjct: 281 IATVTFAAAFTLPGGYKNDRGTAILAKKAAFIVFVISDAMSMVLSILAVFIHFLISLIHG 340

Query: 288 IEATK------DFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLS 341
            E  K      D    LF  +   T+  MG M+IAFVTGTYA+L PSL LAI TCLIGLS
Sbjct: 341 FEMVKDKVIDEDTTEILFVVATLFTMIGMGTMIIAFVTGTYAVLEPSLELAISTCLIGLS 400

Query: 342 FFLL 345
           FF+L
Sbjct: 401 FFVL 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/352 (42%), Positives = 219/352 (62%), Gaps = 26/352 (7%)

Query: 7   LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAG 66
           ++++K  ++ + D+ GWTP+HYAAY G   +V  LL  D+  +  A+K R+ TALHLAA 
Sbjct: 229 ILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAAC 288

Query: 67  RGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA 126
           + + +++  I+   PDC +LVDN+GWN  HYA++S   + L  LL  NP    L+NE DA
Sbjct: 289 QANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKSDDALKILLA-NPSCIYLVNEKDA 347

Query: 127 MENTPLHVLAAVR--PKEFHAVMIKKTQANYDAVNKRN-VSVRHIFSYGYPKLKEEIQKL 183
             NTPLH+LAA++  P+     ++   + +  AV ++N + ++ + S   P  K+EIQ+ 
Sbjct: 348 QGNTPLHLLAALQSHPRS----LMHHAKGHRFAVYRQNFLCIKELLSRS-PCRKKEIQEW 402

Query: 184 SKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFTIPG 243
            +D G G     VI K          DD    ++  R+SH+VVAAL+ATV FAAAFT+PG
Sbjct: 403 MRDLGGGPLGQIVIKK----------DDFILTFERARDSHIVVAALVATVTFAAAFTLPG 452

Query: 244 GYRS-----ENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGAL 298
           GYRS     + G AIL +N AF+AF++ D+IAMV S S++F HF  +L +   +     L
Sbjct: 453 GYRSNDDEKDQGVAILGKNSAFKAFLITDAIAMVLSTSSLFIHF--TLALHGYRQRFMWL 510

Query: 299 FGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIM 350
              +    +F++ AMV+AFVTGTYA+L PS GLAI TC IGLSFF+ V +I+
Sbjct: 511 MVYAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVFFIL 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/355 (41%), Positives = 214/355 (60%), Gaps = 23/355 (6%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHL 63
           +L+E K  + KE D+ GW+P+H AAY G+  +V  LL+   D+S + +  KD K TALH+
Sbjct: 248 RLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHI 307

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL--ARSLI 121
           AA R H   V+ +LS SPDC E VD+KG N LHYA++S +      +L  N L   R LI
Sbjct: 308 AANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLI 367

Query: 122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK----LK 177
           NE DA  +TPLH+LA+ +   +   +    + +  A+NK  ++   I S    K     K
Sbjct: 368 NEKDAKGDTPLHLLASYQV--YDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFK 425

Query: 178 EEIQKLSKDFGR---GQYS-----NGVICKSELEYIERQNDDTKDDYKDTRESHLVVAAL 229
           EEI++  +++ +   G +S     N     S+ E +E+  D++    K   E+HL+VAAL
Sbjct: 426 EEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDVEK--DESISTTKREGETHLIVAAL 483

Query: 230 IATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIE 289
           +ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F MS  + 
Sbjct: 484 VATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMS--VH 540

Query: 290 ATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFL 344
             +D+         +LT+ SMGAMV+AF+TG YA+L  S GL I+TC+I   F L
Sbjct: 541 EDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVTCIICCIFLL 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 202/355 (56%), Gaps = 68/355 (19%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAY-----YGNYGMVNLLLEIDQSASNIANKDRKMTA 60
           ++++ +K++  E ++ GWTP+HYAAY     +G Y +V  LLE D+SA+ + +KDRK TA
Sbjct: 252 EILKREKRLTIEAEENGWTPLHYAAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTA 311

Query: 61  LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL 120
           LHLAA RG+ R ++ I+S  PDC E+ D++GWN LHYA+VS   E L  +L N+ L   L
Sbjct: 312 LHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLI-DL 370

Query: 121 INEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEI 180
           +N+ DA  NTPLH+LA  RP  +    +   + + +A  K+NV                 
Sbjct: 371 VNDRDAQGNTPLHLLAVSRP--YLPSFVFDGEDDLNAFYKQNV----------------- 411

Query: 181 QKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFAAAFT 240
             LS+D                   +  ++  +  Y+  R+                 FT
Sbjct: 412 --LSRD-------------------DLIHELLQPKYQQKRQX---------------XFT 435

Query: 241 IPGGYRSE-----NGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFD 295
           +PGGYRS+      GTAIL ++ AF+AFI+ D+IAMV S  +VF HF++ L     K + 
Sbjct: 436 LPGGYRSDENDPRQGTAILSKSSAFEAFIITDTIAMVLSTCSVFIHFIVMLLGYQEKYW- 494

Query: 296 GALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIM 350
             L  ++L   +F+MGAMV+AF TGTYA+L PSLGLA+ TC IGLSFF+ V +++
Sbjct: 495 -WLIRSALLFIMFAMGAMVVAFATGTYAVLSPSLGLAVATCFIGLSFFIYVFYML 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478095|ref|XP_002274107.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/346 (41%), Positives = 209/346 (60%), Gaps = 23/346 (6%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHL 63
           +L+E K  + KE D+ GW+P+H AAY G+  +V  LL+   D+S + +  KD K TALH+
Sbjct: 263 RLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALHI 322

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL--ARSLI 121
           AA R H   V+ +LS SPDC E VD+KG N LHYA++S +      +L  N L   R LI
Sbjct: 323 AANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLI 382

Query: 122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK----LK 177
           NE DA  +TPLH+LA+   + +   +    + +  A+NK  ++   I S    K     K
Sbjct: 383 NEKDAKGDTPLHLLASY--QVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFK 440

Query: 178 EEIQKLSKDFGR---GQYS-----NGVICKSELEYIERQNDDTKDDYKDTRESHLVVAAL 229
           EEI++  +++ +   G +S     N     S+ E +E+  D++    K   E+HL+VAAL
Sbjct: 441 EEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSEDVEK--DESISTTKREGETHLIVAAL 498

Query: 230 IATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIE 289
           +ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F MS  + 
Sbjct: 499 VATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMS--VH 555

Query: 290 ATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
             +D+         +LT+ SMGAMV+AF+TG YA+L  S GL I+T
Sbjct: 556 EDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126975|ref|XP_002329352.1| predicted protein [Populus trichocarpa] gi|222870402|gb|EEF07533.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/352 (38%), Positives = 201/352 (57%), Gaps = 28/352 (7%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAY--YGNYGM--VNLLLEIDQSASNIANKDRKMTA 60
           RK+++    + + TD  GW+P+HYAA+  Y ++G+  V +LLE D SA+ I + +++ TA
Sbjct: 9   RKILKRNPSLTRRTDDDGWSPLHYAAFFPYLSHGVPTVKVLLEHDVSAAYIVDSEKR-TA 67

Query: 61  LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL 120
           LHLA  RG    V  I++  P C ELVDN+GWN LHYA  +  ++      +  P    L
Sbjct: 68  LHLAVVRGDVAAVRAIMNPCPACCELVDNRGWNVLHYAATT--IKGYFYFPQWIPHFEKL 125

Query: 121 INEGDAMENTPLHVLAAVR--PKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKE 178
             E D   NTPLH+ AA+   P++  +            +NKRN+SV  I    +P+ K+
Sbjct: 126 KYEKDNDGNTPLHLYAALGNFPQQRLSSDWIHAYKKMCGLNKRNLSVDDILGRNFPETKK 185

Query: 179 EIQKLSKDFGRG--QYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFA 236
           EI +  KD   G  Q    ++ K  L   ER             E+ ++VAAL+ATV FA
Sbjct: 186 EILESLKDVRSGPLQRPIAMMKKEYLSISERG-----------METRVLVAALVATVTFA 234

Query: 237 AAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFL---MSLKIEATKD 293
           AAFT+PGGY++E G A+L +N AF  F+++D+IAM+ S+SA+F HF    +  + +  +D
Sbjct: 235 AAFTMPGGYKNEQGIAVLLKNAAFVVFVISDAIAMLLSISALFMHFCWAPIGTRGQVEED 294

Query: 294 FDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLL 345
             G        LT+ ++ AMVIAF+TG+YA+L PS  LAI TC IG +F   
Sbjct: 295 MKGNWTST---LTICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFIFF 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 40/375 (10%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHL 63
           +L+E K  + KE D+ GW+P+H AAY G   +V  LL+   D+S + +  KD K TALH+
Sbjct: 263 RLLEWKPDLTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHI 322

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL--ARSLI 121
           AA R H   V+ +LS SPDC E VD+KG N LH A++S R     N+  +N L     LI
Sbjct: 323 AANRHHQDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLI 382

Query: 122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK------ 175
           NE DA  +TPLH+LA+ +   +   + +  + +  A+NK  ++   I S    K      
Sbjct: 383 NEKDAKGDTPLHLLASYQV--YDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNISR 440

Query: 176 -------------------LKEEIQKLSKDFGRGQY-SNGVICKSELEYIERQNDDTKDD 215
                               +E I K S   G G    NG   KS+    +   D    +
Sbjct: 441 EVLLKQLKEGEKVDVGPFSWQEAINKDSGSTGNGSADDNGSSSKSK----DVGEDKIISN 496

Query: 216 YKDTRESHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSL 275
                E+HL+VAAL+ATV FAA FT+PGGY S+ G A L +  AF AFIV D+IA+  S+
Sbjct: 497 INRIGETHLIVAALVATVTFAAGFTLPGGYDSD-GMATLTKKAAFIAFIVTDTIAVTLSV 555

Query: 276 SAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
           SAVF +F MSL  E     +  LF    +LT+F +GAM++AF+TG YA+L  S GL I+ 
Sbjct: 556 SAVFVYFFMSLH-EDEGFLEKHLF-TGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVA 613

Query: 336 CLIGLSFFLLVIWIM 350
           C+I  SFFLL  + +
Sbjct: 614 CII-CSFFLLPFYFV 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205151|emb|CBI17210.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 207/350 (59%), Gaps = 12/350 (3%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYG-NYGMVNLLLE-IDQSASNIANKDRKMTALH 62
           + ++E K  + KE D+ GW+P+HYAA  G +  +V LLLE  ++S + + +KD K TALH
Sbjct: 46  KTILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALH 105

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQL--TNLLENNPL-ARS 119
           +A+   H + VE ILS SP C E VD+KG N  H+AM+    +    ++   N  L +R 
Sbjct: 106 IASFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRG 165

Query: 120 LINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEE 179
           L+NE +A  NTP+H+L+  +  +F  V   K   +  A N  +++   I       + EE
Sbjct: 166 LVNEKNAQGNTPIHLLSLNQILDFRFVWNYKV--DKKAYNNEDLTAYDIILRDKEDISEE 223

Query: 180 ---IQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALIATVAFA 236
              IQ   +    G+ S+    +++ + IE++  +     +   E+HL+V+ALI TV FA
Sbjct: 224 KDRIQSWLEAVTTGRISSFWEKETKRQEIEQERKEYISQLQKQGETHLIVSALITTVTFA 283

Query: 237 AAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDG 296
           A FT+PGGY+ ++G AIL +  AF+AF+V D+IAMV SL AVF HFLM+L  +  K  + 
Sbjct: 284 AGFTLPGGYKEDDGQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFLMTLH-KRGKFLEK 342

Query: 297 ALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLV 346
            L  A   LT+  MGAM IAF TG YA+L  S GL+++TC++   FFL +
Sbjct: 343 HLLWA-FSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLSI 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477893|ref|XP_002271294.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 204/356 (57%), Gaps = 24/356 (6%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYG-NYGMVNLLLE-IDQSASNIANKDRKMTALH 62
           + ++E K  + KE D+ GW+P+HYAA  G +  +V LLLE  ++S + + +KD K TALH
Sbjct: 254 KTILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALH 313

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNP------- 115
           +A+   H + VE ILS SP C E VD+KG N  H+AM+    +        NP       
Sbjct: 314 IASFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDF------NPSSYFFNY 367

Query: 116 --LARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGY 173
              +R L+NE +A  NTP+H+L+  +  +F  V   K      A N  +++   I     
Sbjct: 368 WLRSRGLVNEKNAQGNTPIHLLSLNQILDFRFVWNYKVDKK--AYNNEDLTAYDIILRDK 425

Query: 174 PKLKEE---IQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHLVVAALI 230
             + EE   IQ   +    G+ S+    +++ + IE++  +     +   E+HL+V+ALI
Sbjct: 426 EDISEEKDRIQSWLEAVTTGRISSFWEKETKRQEIEQERKEYISQLQKQGETHLIVSALI 485

Query: 231 ATVAFAAAFTIPGGYRSENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEA 290
            TV FAA FT+PGGY+ ++G AIL +  AF+AF+V D+IAMV SL AVF HFLM+L  + 
Sbjct: 486 TTVTFAAGFTLPGGYKEDDGQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFLMTLH-KR 544

Query: 291 TKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLV 346
            K  +  L  A   LT+  MGAM IAF TG YA+L  S GL+++TC++   FFL +
Sbjct: 545 GKFLEKHLLWA-FSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLSI 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.914	0.475	0.280	8.2e-16
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.497	0.322	0.294	8.1e-15
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.937	0.475	0.25	2.4e-12
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.934	0.513	0.258	2.8e-12
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.403	0.230	0.311	4.4e-12
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.519	0.291	0.291	1.1e-11
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.522	0.277	0.279	2.4e-10
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.420	0.243	0.320	2.4e-08
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.508	0.341	0.293	2.5e-08
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.392	0.257	0.299	7.3e-08

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 8.2e-16, P = 8.2e-16
 Identities = 100/357 (28%), Positives = 155/357 (43%)

Query:     7 LVEEKKKMIKETDQYGWTPIHYAAYYGNY-GMVNLLLEIDQSASNI-ANKDRKMTALHLA 64
             ++ E   +I   D+ G T + + A  G Y G   LL   D++  ++  + D     +H+A
Sbjct:   302 ILSEDASLINFRDE-GRTCLSFGASLGYYEGFCYLL---DKALDSVYVSDDDGSFPIHMA 357

Query:    65 AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE--NNPLARSLIN 122
                G+ + ++ IL   PD  EL+D +  N LH A  + ++E L  +L    +     LIN
Sbjct:   358 VKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLIN 417

Query:   123 EGDAMENTPLHVLAAV-RPKEFHAVM----IKKTQANYDAVNKRNVSVRHI-FSYGYPKL 176
             E DA  NTPLH+      PK    +     +     N+D V   +++ +++  SY + + 
Sbjct:   418 EEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSYTFFER 477

Query:   177 KEEIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHXXXXXXXXXXXXX 236
                +  +S    RG        K  L     QN D    YKD   +              
Sbjct:   478 LTWMALISAGAPRGP-------KLILSTPVTQNSDG-GKYKDRVNTLLLVATLVATMTFT 529

Query:   237 XXXXXPGGYRSE--N-GTAILRRNKAFQAFIVADSIAM---VFSLSAVFTHFLMSLKIEA 290
                  PGGY     N G A L +  AFQ F+V D++AM   + ++ A+    L  L +  
Sbjct:   530 AGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALIWAQLGDLSL-I 588

Query:   291 TKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVI 347
              K F+ AL    L L L SM    IAF+ GTYA +   L + ++T    L F LL +
Sbjct:   589 MKAFNLAL--PLLGLALTSMS---IAFMAGTYAAVYGLLIVGVLTSSY-LDFLLLFV 639

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 53/180 (29%), Positives = 86/180 (47%)

Query:     4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
             L+ L E   ++    D    T +H AA  G+  +VN LLE+  S + IA  + K TALH 
Sbjct:   117 LKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGK-TALHS 175

Query:    64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
             A+  GH + ++ +L+  P     +D KG   LH A+    VE +  L++ +   RS IN 
Sbjct:   176 ASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKAD---RSSINI 232

Query:   124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN-VSVRHIFSYGYPKLKEEIQK 182
              D   NT LH+ A     +   +++     +  AVN+    ++      G P++   +QK
Sbjct:   233 ADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQK 292

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 89/356 (25%), Positives = 150/356 (42%)

Query:     7 LVEEKKKMIKETDQYGWTPIHYAAYYGNY-GMVNLLLEIDQSASNIANKDRKMTALHLAA 65
             +++E   ++ E D  GWT +  AA+ G Y G+ NLL E       + ++D     +H AA
Sbjct:   310 ILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLL-ERSTKGVYVCDQDGSFP-IHTAA 367

Query:    66 GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
              +GH   VE  +   P    L++  G N LH A  + +   ++N+L  N     L    D
Sbjct:   368 EKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKF-WISNMLIINKDTEHLGVGQD 426

Query:   126 AMENTPLHVLAAVRPKEFHAV--MIKKTQA----NYDAVNKRNVSVRHIFS-YGYPKLKE 178
                NTPLH+  AV    F ++  + + ++     N + +  R+++ R +   Y + +   
Sbjct:   427 VDGNTPLHL--AVMNWHFKSITWLARSSKILKVRNKNGLRARDIAEREVKPHYIFQERWT 484

Query:   179 EIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESHXXXXXXXXXXXXXXX 238
                 L     RG  S   + K  +    + N D    Y +T                   
Sbjct:   485 LALLLYAIHSRGFESVHSLTKPSVPLDPKNNRD----YVNTL---LLVAALVATMTFAAG 537

Query:   239 XXXPGGYRSEN---GTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFD 295
                PGG+ S     G A L  N     F+V D +AM  S++ +    L+  ++       
Sbjct:   538 FTIPGGFNSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATI--GILIWAQLGDPVLIR 595

Query:   296 GALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIMG 351
              +L  A L L LF++  M +AF+ G    +     L +I C+I + FF   I+++G
Sbjct:   596 SSLHVA-LPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFFSWAIFVLG 650

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 94/364 (25%), Positives = 157/364 (43%)

Query:     7 LVEEKKKMIKETDQYGWTPIHYAAYYGNY-GMVNLLLEIDQSASNIANKDRKMT-ALHLA 64
             ++ E   ++ E D+ G T +  AAY G Y G+VNLL    +S SN+   D   +  +H+A
Sbjct:   242 ILSEDPSLVNERDEEGRTCLSVAAYVGYYKGVVNLL---HRSTSNVFECDDDGSYPIHMA 298

Query:    65 AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV-EQLTNLLENNPLARS-LIN 122
               +G  +    +L   PD   L++ +G N LH A  S +    L  +++   L ++ LI 
Sbjct:   299 VEKGRVKIFLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIM 358

Query:   123 EGDAMENTPLHVLAAV-RPKEFHAVMIKKTQANYDAV-NKRNVSVRHIF------SYGYP 174
             E D   NTPLH+     RP+  + ++ K T  N+  + NK  +S   I       +Y + 
Sbjct:   359 EQDVDGNTPLHLATLTWRPRTVN-ILNKFTLGNHLHIRNKDGLSALDIAESNLQSNYVFR 417

Query:   175 KLKEEIQKLSKDFGRGQY---SNGVICKSELEYIERQNDDTKDDYKDTRESHXXXXXXXX 231
             +    +  L     RG     ++G+  KS  E +        + YKD+            
Sbjct:   418 ERMTLMVLLCTCSPRGFKMIPTSGITLKSRSEKV------AGNKYKDSINVLLLVATLVA 471

Query:   232 XXXXXXXXXXPGGYRS---ENGTAILRRNKAFQAFIVADSIAMVFSLSAVFTHFLMSL-- 286
                       PGG+ S   + G AIL  +     F+V +++AM  S+ A+       L  
Sbjct:   472 TVAFAAGIAIPGGFSSSTPKRGIAILDDDDFLSIFLVFNTLAMQSSVLAIVALIWAQLGD 531

Query:   287 KIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLV 346
              +   K F  AL   +L+++L SM +   AF  G  A    +  L      I + F  +V
Sbjct:   532 PVLVHKTFHLAL--PALFVSLVSMSS---AFFCGVVATTKHNPWLFDSIIFISIIFLFVV 586

Query:   347 IWIM 350
              +++
Sbjct:   587 AYLL 590

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 47/151 (31%), Positives = 80/151 (52%)

Query:    14 MIKETDQYGWTPIHYAAYYGNY-GMVNLLLEIDQSASNIAN--KDRKMTALHLAAGRGHA 70
             +I+  ++ G T + Y A  G Y G+  +L E D++AS++     D   T +H+AA  GH 
Sbjct:   241 LIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHV 300

Query:    71 RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
             R ++  L   PD  EL++N+  N  H A ++ + + +  LL+ +   + ++NE D   NT
Sbjct:   301 RIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDE-GKRMMNEQDINGNT 359

Query:   131 PLHVLAAVRPKEFHAVMIKKTQANYDAVNKR 161
             PLH LA    K  + +++     N D +N R
Sbjct:   360 PLH-LAT---KHRYPIVVNMLTWN-DGINLR 385

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 56/192 (29%), Positives = 88/192 (45%)

Query:     3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
             AL+KL+E    +    D    T +H AA  G+  +VNLLL+ D   + IA  + K TALH
Sbjct:   203 ALKKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGK-TALH 261

Query:    63 LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
              AA  GH   V++++          D KG   LH A+       +  L++ +P   ++++
Sbjct:   262 SAARMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDP---AILS 318

Query:   123 EGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS-YGYPKL----K 177
               D+  NTPLH        +    ++     N +A+NK   +   I    G P+L    K
Sbjct:   319 VEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLK 378

Query:   178 EEIQKLSKDFGR 189
             E     +KD G+
Sbjct:   379 EAGAATAKDLGK 390

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 54/193 (27%), Positives = 87/193 (45%)

Query:     4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
             L+ L+E    +   TD    T +H AA  G+  +VNLLLE D + + IA  + K TALH 
Sbjct:   240 LKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGK-TALHS 298

Query:    64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
             AA  GH   V++++   P      D KG   LH A+       +  L++ +    ++++ 
Sbjct:   299 AARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDV---AVLSV 355

Query:   124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS-YGYPKL----KE 178
              D   NTPLH+       +    ++     N + +NK   +   +    G  +L    KE
Sbjct:   356 EDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKE 415

Query:   179 EIQKLSKDFGRGQ 191
                  +KD G+ Q
Sbjct:   416 AGAATAKDLGKPQ 428

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 50/156 (32%), Positives = 76/156 (48%)

Query:     7 LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAG 66
             L+E + ++ K   Q   TP+  AA  G+  +VN LL  D S   I+  + K  ALHLAA 
Sbjct:   197 LLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGK-NALHLAAR 255

Query:    67 RGHARTVETILSLSPDCYELVDNKGWNFLHYAM--VSFRVEQLTNLLENNPLARSLINEG 124
             +GH   V T+L   P      D KG   LH A+  VS +V +L  LL  +P   +++   
Sbjct:   256 QGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRL--LLRADP---AIVMLP 310

Query:   125 DAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK 160
             D   NT LH+    +  E    +++    N +A+ +
Sbjct:   311 DKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTR 346

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 54/184 (29%), Positives = 80/184 (43%)

Query:     7 LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAG 66
             L+E   ++    D    T +H AA  G+  +V  LL+     + IA  + K TALH AA 
Sbjct:   110 LIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHSAAR 168

Query:    67 RGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA 126
              GH   V+ ++         VD KG   LH A+     E +  L+E +    SLIN  D 
Sbjct:   169 NGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG---SLINSADN 225

Query:   127 MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSY-GYPKLKEEIQKLSK 185
               NTPLH+       E    ++K  + +  AVNK   +   I    G  ++   +QK+  
Sbjct:   226 KGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGM 285

Query:   186 DFGR 189
                R
Sbjct:   286 QNAR 289

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
 Identities = 47/157 (29%), Positives = 73/157 (46%)

Query:    12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHAR 71
             KK+ ++ + +G T +H A   GN  +V  ++EI  S  +  N  +  T LHLAA  GH  
Sbjct:    17 KKLEEQDESFGGTFLHLAVKLGNEELVKKIVEIHPSLVSSTNT-KSDTPLHLAARLGHTS 75

Query:    72 --------TVETILSLS---PD---CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
                     T E+I SL    P+     E+V+  G+  LH A+++  VE LT  +   PL+
Sbjct:    76 ILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLS 135

Query:   118 RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN 154
                +    +   T  H+  A R K+  A +     AN
Sbjct:   136 FDSVTLQTS--ETVFHL--AARHKKMEAFIFMAKNAN 168

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  116 bits (292), Expect = 5e-32
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 10/118 (8%)

Query: 213 KDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSEN-----GTAILRRNK-AFQAFIVA 266
            +  + TR S LVVA LIATV FAA FT PGGY  ++     GT IL      F+AF V+
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 267 DSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAM 324
           ++IA V SL AV    L+ +    ++        A L L   S+ ++++AF  G+Y +
Sbjct: 61  NTIAFVASLVAVI--LLLYIVPSFSR--RLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI 76
             D+ G TP+H AA  G+  +V LLLE    A   A  +   T LHLAA  GH   V+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
           L    D     D  G   LH A  +  ++ +  LL++     + +N  D    TPLH+
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           E    +   D  G TP+H AA  G+  +V LLLE    A   A      T LHLAA  G+
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--ADVNARDKDGNTPLHLAARNGN 85

Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAM 99
              V+ +L    D     D  G   LH A 
Sbjct: 86  LDVVKLLLKHGADVNA-RDKDGRTPLHLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 26  IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYE 85
           +H AA  GN  +V LLLE         N     TALHLAA  G+   V+ +L    D   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 86  LVDNKGWNFLHYAMVSFRVEQLTNLLENNP 115
             D  G   LH A  +  +E +  LLE+  
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           EK   +   D+ G TP+H AA  GN  +V LLL+      N  +KD + T LHLAA  GH
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGR-TPLHLAAKNGH 118

Query: 70  ARTVETIL 77
              V+ +L
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGN-----YGMVNLLLE--IDQSASNIANKDRKMTALHLAAGR 67
           +   D  G TP+H AA  GN       +  LLLE   D   +N+ ++D   T LH AA  
Sbjct: 99  VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN-TPLHWAALN 157

Query: 68  GHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM 127
           G A  VE +L    D     ++ G   L  A  + R+E +  LL+       L    + +
Sbjct: 158 GDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGV 216

Query: 128 ENTPL 132
            N  +
Sbjct: 217 ANANV 221

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 3  ALRKLVEEKKKM-IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTA 60
           ++ L+E+   + + +TD    T +H AA  GN  +V LLLE     +++  KD+   TA
Sbjct: 12 LVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHG---ADVNAKDKDGNTA 64

Query: 61 LHLAAGRGHARTVETILSLSPD 82
          LHLAA  G+   V+ +L    D
Sbjct: 65 LHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 13/225 (5%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK-DRKMTALHLA 64
           KL+ EK       D  G +P+H AA YG+Y  + LL++     ++I NK     T LH A
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID---HGNHIMNKCKNGFTPLHNA 230

Query: 65  AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM-VSFRVEQLTNLLENNPLARSLINE 123
               H R+   +L ++       D  G   LH+A+     ++ +  LL +        N+
Sbjct: 231 I--IHNRSAIELL-INNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNK 287

Query: 124 GDAMENTPL-HVLAAVRPKEF--HAVMIKKTQ--ANYDAVNKRNVSVRHIFSYGYPKLKE 178
           G+   +T   ++      K+   +AV+IK+     + D +    +     FS    +  E
Sbjct: 288 GENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNE 347

Query: 179 EIQKLSKDFGRGQYSNGVICKSELEYIERQNDDTKDDYKDTRESH 223
           EI+ + K       +   +C   +++    N+D+  DY +  + +
Sbjct: 348 EIEDMKKTKCGCDKNIFDLCLIRIKHKFDGNEDSIKDYLNCLDDN 392

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETIL 77
          G T +H AA  G   +V  LLE      +I   D    TALH+AA  G+   ++ +L
Sbjct: 1  GRTALHKAAISGRLELVKYLLE---KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 30/166 (18%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
           +++ E    +   D Y  TPIHYAA  GN  MVNLLL      + IA  D  ++ L  A 
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVLECAV 219

Query: 66  GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL----- 120
              +  T++ I          +DN+       + ++     L   + N  L  SL     
Sbjct: 220 DSKNIDTIKAI----------IDNR-------SNINKNDLSLLKAIRNEDLETSLLLYDA 262

Query: 121 ---INEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNV 163
              +N  D  +NTPLH   A +      ++ K  +   D VN +N+
Sbjct: 263 GFSVNSIDDCKNTPLH--HASQAPSLSRLVPKLLERGAD-VNAKNI 305

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 24/186 (12%)

Query: 1   DAALRKLVEEKKKMIKE-----TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD 55
                 L E   K+I +      D  G  P+H AA  G+  +V LL  +   A   A   
Sbjct: 47  LLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL--LASGADVNAKDA 104

Query: 56  RKMTALHLAAGRGH-----ARTVETILSL--SPDCYELVDNKGWNFLHYAMVSFRVEQLT 108
              T LHLAA  G+         + +L      D   L D  G   LH+A ++   + + 
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 109 NLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKK------TQANYDAVNKRN 162
            LLE      S  + G     T L   A     E   +++ K       + N + V   N
Sbjct: 165 LLLEAGADPNSRNSYGV----TALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANAN 220

Query: 163 VSVRHI 168
           VS R+I
Sbjct: 221 VSKRNI 226

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 21 YGWTPIHYAAYYGNYGMVNLLLE 43
           G TP+H AA  G+  +V LLLE
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 3  ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLL 42
           ++ L+E+    I  TD+ G T +H AA  GN  ++ LLL
Sbjct: 16 LVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 7  LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLA 64
          L+E     +  TD  G TP+H AA YG   +V  LL+      N+ + D   TAL LA
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I   D YG+TP+HYA Y  N   V  LL  D  A+ N+ NK    T LH+A    +    
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLL--DLGANPNLVNKYGD-TPLHIAILNNNKEIF 241

Query: 74  ETILSLSPD 82
           + +L+  P 
Sbjct: 242 KLLLNNGPS 250

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 29/137 (21%)

Query: 15  IKETDQYGWTPIHYAAYYGN----YGMVNLLLE--IDQSASNIANKDRKMTALH--LAAG 66
           +   D+ G TP+H   Y         ++ LLL    D +A ++      MT L   L + 
Sbjct: 110 VNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALDLYG----MTPLAVLLKSR 163

Query: 67  RGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG-- 124
             +   +  ++    D Y  VD++  + LH+ + SF+            + R LI  G  
Sbjct: 164 NANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFK--------PRARIVRELIRAGCD 214

Query: 125 ----DAMENTPLHVLAA 137
               D + NTPLH +A 
Sbjct: 215 PAATDMLGNTPLHSMAT 231

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           I   ++YG TP+HYAA + N      L+ +    + +++     T L L     + R V 
Sbjct: 250 INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN--TPLSLMVRNNNGRAVR 307

Query: 75  TILSLSPDCYELVDN 89
             L+ +P   E V  
Sbjct: 308 AALAKNPS-AETVAA 321

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 21 YGWTPIHYAAYYGNYGMVNLLLE 43
           G TP+H AA  GN  +V LLL+
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLD 23

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 21 YGWTPIHYAAYYGNYGMVNLLLE 43
           G TP+H AA  GN  +V LLLE
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PF13962	113	PGG: Domain of unknown function	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02917	661	ankyrin-like protein; Provisional	99.89
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
PHA02730	672	ankyrin-like protein; Provisional	99.87
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02792	631	ankyrin-like protein; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02792	631	ankyrin-like protein; Provisional	99.84
PHA02730	672	ankyrin-like protein; Provisional	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
KOG0514	452	consensus Ankyrin repeat protein [General function	99.77
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.42
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.3
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.24
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.05
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.86
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.76
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.73
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.64
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
PF13606	30	Ank_3: Ankyrin repeat	98.61
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.26
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.22
KOG2384	223	consensus Major histocompatibility complex protein	98.21
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.2
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.17
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0511	516	consensus Ankyrin repeat protein [General function	97.99
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.96
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.7
KOG2384	223	consensus Major histocompatibility complex protein	97.64
KOG0511	516	consensus Ankyrin repeat protein [General function	97.21
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.88
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.76
KOG2505	591	consensus Ankyrin repeat protein [General function	96.35
KOG2505	591	consensus Ankyrin repeat protein [General function	95.38
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.57
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.63
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	83.57
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	82.89
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	81.74

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=232.89  Aligned_cols=182  Identities=26%  Similarity=0.320  Sum_probs=159.8

Q ss_pred             HHHHHHHHhccccccccCC-CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh-
Q 045346            2 AALRKLVEEKKKMIKETDQ-YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL-   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-   79 (352)
                      ..+++++.+.+..++.+|. +|+||||+||+.|+.+++++|++......+.+| +.|+||||+|+..|+.++|+.|+.+ 
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkD-daGWtPlhia~s~g~~evVk~Ll~r~   95 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKD-DAGWTPLHIAASNGNDEVVKELLNRS   95 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcc-ccCCchhhhhhhcCcHHHHHHHhcCC
Confidence            4578889888866777665 999999999999999999999975444447778 8999999999999999999999999 


Q ss_pred             CCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccc
Q 045346           80 SPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n  159 (352)
                      ++++ +..++.|+|+||+|+..|+.|+.++|++    .|+.++.+|..|.||||-|+..|+.+.+ .+|...|+.+|.+|
T Consensus        96 ~adv-na~tn~G~T~LHyAagK~r~eIaqlLle----~ga~i~~kD~~~qtplHRAAavGklkvi-e~Li~~~a~~n~qD  169 (226)
T KOG4412|consen   96 GADV-NATTNGGQTCLHYAAGKGRLEIAQLLLE----KGALIRIKDKQGQTPLHRAAAVGKLKVI-EYLISQGAPLNTQD  169 (226)
T ss_pred             CCCc-ceecCCCcceehhhhcCChhhHHHHHHh----cCCCCcccccccCchhHHHHhccchhhH-HHHHhcCCCCCccc
Confidence            8888 8999999999999999999999999999    7899999999999999999999999988 55566889999999


Q ss_pred             cCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          160 KRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       160 ~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +.|+||||.|...++.   +.-.+|.++|++...
T Consensus       170 k~G~TpL~~al~e~~~---d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  170 KYGFTPLHHALAEGHP---DVAVLLVRAGADTDR  200 (226)
T ss_pred             ccCccHHHHHHhccCc---hHHHHHHHhccceee
Confidence            9999999999665544   666777777765544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-32  Score=215.65  Aligned_cols=161  Identities=25%  Similarity=0.342  Sum_probs=148.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      |++.-|+.+.+..+|.+|..||||||+|++.|+.++|+.|+.+ ++++ +..+ ..|.||||+|+..|+.+++.+|+++|
T Consensus        52 eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~t-n~G~T~LHyAagK~r~eIaqlLle~g  129 (226)
T KOG4412|consen   52 EIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATT-NGGQTCLHYAAGKGRLEIAQLLLEKG  129 (226)
T ss_pred             hHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceec-CCCcceehhhhcCChhhHHHHHHhcC
Confidence            6777888777888999999999999999999999999999998 7777 8888 79999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccccccc
Q 045346           81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK  160 (352)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~  160 (352)
                      +.+ +.+|..|.||||-|+.-|+.+++++|+.    .++.+|.+|+.|+||||.|...|+.+.. .+|.++|++++..|+
T Consensus       130 a~i-~~kD~~~qtplHRAAavGklkvie~Li~----~~a~~n~qDk~G~TpL~~al~e~~~d~a-~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  130 ALI-RIKDKQGQTPLHRAAAVGKLKVIEYLIS----QGAPLNTQDKYGFTPLHHALAEGHPDVA-VLLVRAGADTDREDK  203 (226)
T ss_pred             CCC-cccccccCchhHHHHhccchhhHHHHHh----cCCCCCcccccCccHHHHHHhccCchHH-HHHHHhccceeeccc
Confidence            888 9999999999999999999999999999    7789999999999999999767776666 678889999999999


Q ss_pred             CCcchHHHHhh
Q 045346          161 RNVSVRHIFSY  171 (352)
Q Consensus       161 ~g~Tpl~~a~~  171 (352)
                      +| ||+.++..
T Consensus       204 e~-t~~~~a~~  213 (226)
T KOG4412|consen  204 EG-TALRIACN  213 (226)
T ss_pred             cC-chHHHHHH
Confidence            99 99888754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=6.5e-31  Score=243.93  Aligned_cols=175  Identities=24%  Similarity=0.216  Sum_probs=158.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.++++++..+..++..|++|.|+||+||.+++.+++++|+++++++ |..+..-|.||||||+++|+..+|+.|+++|+
T Consensus        58 ~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGA  136 (600)
T KOG0509|consen   58 ETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGA  136 (600)
T ss_pred             HHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence            57899999779999999999999999999999999999999999999 66554788999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccc-c
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN-K  160 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n-~  160 (352)
                      ++ +.+|.+|.||+|+|+..++.-.+-+++.    .+.++|.+|.+|+||||+|+.+|+...+. .|++.|+.++.+| +
T Consensus       137 dp-t~~D~~G~~~lHla~~~~~~~~vayll~----~~~d~d~~D~~grTpLmwAaykg~~~~v~-~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  137 DP-TLKDKQGLTPLHLAAQFGHTALVAYLLS----KGADIDLRDNNGRTPLMWAAYKGFALFVR-RLLKFGASLLLTDDN  210 (600)
T ss_pred             CC-ceecCCCCcHHHHHHHhCchHHHHHHHH----hcccCCCcCCCCCCHHHHHHHhcccHHHH-HHHHhcccccccccc
Confidence            99 9999999999999999999999999998    67999999999999999999999877664 4555899999988 9


Q ss_pred             CCcchHHHHhhcCCCcHHHHHHHHHH
Q 045346          161 RNVSVRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       161 ~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (352)
                      +|.||||+|+..|+.   ..+.++.+
T Consensus       211 ~g~TpLHwa~~~gN~---~~v~Ll~~  233 (600)
T KOG0509|consen  211 HGNTPLHWAVVGGNL---TAVKLLLE  233 (600)
T ss_pred             cCCchHHHHHhcCCc---ceEehhhh
Confidence            999999999999887   44454444

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=222.04  Aligned_cols=162  Identities=16%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .+|.+|+||||+|+..|+.+++++|++++++. +.+   +|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh   99 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC---CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            44555555555555555555555555554433 221   2345555555555555555555555444 444555555555


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCC---------------------------------CCcHHHHHHhcCChHH
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAM---------------------------------ENTPLHVLAAVRPKEF  143 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~---------------------------------G~T~Lh~A~~~~~~~~  143 (352)
                      +|+..|+.++++.|++    .+++++.+|..                                 |+||||+|++.|+.++
T Consensus       100 ~Aa~~g~~eivk~Ll~----~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~ei  175 (284)
T PHA02791        100 YAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM  175 (284)
T ss_pred             HHHHcCCHHHHHHHHH----CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHH
Confidence            5555555555555554    33334444333                                 4555555555555555


Q ss_pred             HHHHHhhcCccccccccCCcch-HHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          144 HAVMIKKTQANYDAVNKRNVSV-RHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       144 ~~~lL~~~g~~~~~~n~~g~Tp-l~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                      + ++|.++|++++.+|..|.|| ||+|+..++.   ++++.|.+.|+.+
T Consensus       176 v-~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~---e~v~lLl~~Ga~i  220 (284)
T PHA02791        176 M-ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDL---EMLQALFKYDINI  220 (284)
T ss_pred             H-HHHHHCCCCCCcccCCCCChHHHHHHHcCCH---HHHHHHHHCCCCC
Confidence            5 23333555555555555544 5555555433   5555555555444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.4e-29  Score=236.55  Aligned_cols=182  Identities=17%  Similarity=0.137  Sum_probs=158.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.++.+|.||||+|+..|+.+++++|+++|+++ +..+ ..+.||||.|+..|+.++++.|++.++
T Consensus        16 ~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~~~   92 (413)
T PHA02875         16 DIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKY-PDIESELHDAVEEGDVKAVEELLDLGK   92 (413)
T ss_pred             HHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccC-CCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence            56667665 78899999999999999999999999999999999887 6676 688999999999999999999999988


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      +..+..+.+|+||||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..|+.+.++ +|.++|++++.+|..
T Consensus        93 ~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh~A~~~~~~~~v~-~Ll~~g~~~~~~d~~  167 (413)
T PHA02875         93 FADDVFYKDGMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLHLAVMMGDIKGIE-LLIDHKACLDIEDCC  167 (413)
T ss_pred             cccccccCCCCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHhcCCCCCCCCCC
Confidence            8766677889999999999999999999998    78889999999999999999999988884 555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |.||||+|+..++.   +++++|.+.|+.+...
T Consensus       168 g~TpL~~A~~~g~~---eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        168 GCTPLIIAMAKGDI---AICKMLLDSGANIDYF  197 (413)
T ss_pred             CCCHHHHHHHcCCH---HHHHHHHhCCCCCCcC
Confidence            99999999988665   8889999888776543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3e-28  Score=226.31  Aligned_cols=162  Identities=26%  Similarity=0.295  Sum_probs=150.1

Q ss_pred             HHHHHHHHhccccccccC-CCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346            2 AALRKLVEEKKKMIKETD-QYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      ++++.|++ +|+++|..+ .-|.||||+|+++|+..++++|+++|+++ +.+| .+|.||||.|++.|+.-.+-+|+.++
T Consensus        92 ~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D-~~G~~~lHla~~~~~~~~vayll~~~  168 (600)
T KOG0509|consen   92 DVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKD-KQGLTPLHLAAQFGHTALVAYLLSKG  168 (600)
T ss_pred             HHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceec-CCCCcHHHHHHHhCchHHHHHHHHhc
Confidence            45666665 889999998 56999999999999999999999999999 9999 89999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccc
Q 045346           81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n  159 (352)
                      .++ +.+|.+|+||||+|+.+|....++.|++    .++.++.+| +.|+||||+|+..|+...+. ++++.|++.+.+|
T Consensus       169 ~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~----f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~  242 (600)
T KOG0509|consen  169 ADI-DLRDNNGRTPLMWAAYKGFALFVRRLLK----FGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTN  242 (600)
T ss_pred             ccC-CCcCCCCCCHHHHHHHhcccHHHHHHHH----hcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccc
Confidence            888 9999999999999999999887899998    778888888 89999999999999999996 8888999999999


Q ss_pred             cCCcchHHHHhhc
Q 045346          160 KRNVSVRHIFSYG  172 (352)
Q Consensus       160 ~~g~Tpl~~a~~~  172 (352)
                      .+|+||+++|.+.
T Consensus       243 ~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  243 TNGKTPFDLAQER  255 (600)
T ss_pred             cCCCCHHHHHHHh
Confidence            9999999999765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.3e-28  Score=215.47  Aligned_cols=142  Identities=16%  Similarity=-0.039  Sum_probs=125.1

Q ss_pred             cCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHH
Q 045346           32 YGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL  111 (352)
Q Consensus        32 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  111 (352)
                      .++.+++++|+++++.   .+| .+|.||||+|+..|+.++++.|++.++++ +..  +|+||||+|+..|+.++++.|+
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D-~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KAD-VHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCC-CCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            3678999999998764   467 79999999999999999999999999887 443  4789999999999999999999


Q ss_pred             hcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC-cchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          112 ENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN-VSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       112 ~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g-~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      +    .|++++.+|.+|+||||+|+..|+.++++ +|.++|++++.+++.| .||+|+|+..++.   +++++|.+.+
T Consensus        82 ~----~Gadvn~~d~~G~TpLh~Aa~~g~~eivk-~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~---eivk~LL~~~  151 (284)
T PHA02791         82 F----SGMDDSQFDDKGNTALYYAVDSGNMQTVK-LFVKKNWRLMFYGKTGWKTSFYHAVMLNDV---SIVSYFLSEI  151 (284)
T ss_pred             H----CCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCcCccCCCCCcHHHHHHHHcCCH---HHHHHHHhcC
Confidence            8    78899999999999999999999999985 5556899999999988 5999999999765   7888887754

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=233.11  Aligned_cols=174  Identities=17%  Similarity=0.148  Sum_probs=131.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHhh
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETILSL   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~   79 (352)
                      |+++.|+. +|.++|.+|.+|+||||+|++.|+.+++++|+++|+++ +.+| .+|.||||+|+..+  ..++++.|+++
T Consensus        53 ~iv~~Ll~-~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d-~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         53 RFVEELLH-RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACD-KQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             HHHHHHHH-CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCC-CCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            45666665 78999999999999999999999999999999999998 8889 89999999998866  47899999999


Q ss_pred             CCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCCh--HHHHHHHhhcCccccc
Q 045346           80 SPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPK--EFHAVMIKKTQANYDA  157 (352)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~--~~~~~lL~~~g~~~~~  157 (352)
                      |+++....|.+|.|||| |+..++.++++.|++    .|.+++.+|..|+||||+|+..++.  +.+ ++|.+.|++++.
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~----~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v-~~Ll~~Gadin~  203 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS----IGFEARIVDKFGKNHIHRHLMSDNPKASTI-SWMMKLGISPSK  203 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHh----ccccccccCCCCCCHHHHHHHhcCCCHHHH-HHHHHcCCCCcc
Confidence            99985456888888887 556677788888877    5666666777777777766654432  334 445556777777


Q ss_pred             cccCCcchHHHHhhcCCCcHHHHHHHHH
Q 045346          158 VNKRNVSVRHIFSYGYPKLKEEIQKLSK  185 (352)
Q Consensus       158 ~n~~g~Tpl~~a~~~~~~~~~~i~~~l~  185 (352)
                      +|.+|+||||+|+..+.. ..++++++.
T Consensus       204 ~d~~G~TpLH~Aa~~~~~-~~~iv~lLl  230 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVK-NVDIINLLL  230 (446)
T ss_pred             cCCCCCCHHHHHHHcCCC-cHHHHHHHH
Confidence            777777777777665421 124444444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.4e-28  Score=229.12  Aligned_cols=182  Identities=18%  Similarity=0.174  Sum_probs=164.0

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|++++..+..|.||||+|+..|+.++++.|++++....+..+ .+|.||||+|+..|+.++++.|+++|+
T Consensus        49 ~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~~~~~iv~~Ll~~ga  126 (413)
T PHA02875         49 EAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFY-KDGMTPLHLATILKKLDIMKLLIARGA  126 (413)
T ss_pred             HHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccccc-CCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            45655555 7888999999999999999999999999999999987756666 789999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.++..|.||||+|+..|+.++++.|++    .+.+++.+|..|+||||+|+..|+.+.+ ++|.+.|++++..+.+
T Consensus       127 d~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~g~~eiv-~~Ll~~ga~~n~~~~~  200 (413)
T PHA02875        127 DP-DIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLIIAMAKGDIAIC-KMLLDSGANIDYFGKN  200 (413)
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHhCCCCCCcCCCC
Confidence            98 8889999999999999999999999999    7788999999999999999999999988 5566799999999988


Q ss_pred             Cc-chHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NV-SVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~-Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |. ||+|+|+..++.   +++++|.+.|+++...
T Consensus       201 ~~~t~l~~A~~~~~~---~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        201 GCVAALCYAIENNKI---DIVRLFIKRGADCNIM  231 (413)
T ss_pred             CCchHHHHHHHcCCH---HHHHHHHHCCcCcchH
Confidence            75 899999999665   9999999999887643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.4e-28  Score=229.43  Aligned_cols=181  Identities=20%  Similarity=0.175  Sum_probs=163.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.+++++...+..++..+.+|.||||.|++.|+.+++++|+++|+++ +..+ ..|.||||.|+..|+.+++++|+++|+
T Consensus        15 ~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~-~~~~t~L~~A~~~~~~~iv~~Ll~~g~   92 (434)
T PHA02874         15 EAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHIN-TKIPHPLLTAIKIGAHDIIKLLIDNGV   92 (434)
T ss_pred             HHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            67889999888889999999999999999999999999999999988 7777 789999999999999999999998876


Q ss_pred             Cc----------------------cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC
Q 045346           82 DC----------------------YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR  139 (352)
Q Consensus        82 ~~----------------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (352)
                      +.                      .+.+|..|.||||+|+..|+.+++++|++    .|.++|.+|.+|+||||+|+..+
T Consensus        93 ~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~----~gad~n~~d~~g~tpLh~A~~~~  168 (434)
T PHA02874         93 DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE----YGADVNIEDDNGCYPIHIAIKHN  168 (434)
T ss_pred             CCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHCC
Confidence            53                      24578899999999999999999999999    78899999999999999999999


Q ss_pred             ChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          140 PKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       140 ~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      +.+++ ++|.+.|++++..|..|.||+|+|+..++.   +++++|.+.|....
T Consensus       169 ~~~iv-~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~---~iv~~Ll~~g~~i~  217 (434)
T PHA02874        169 FFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDY---ACIKLLIDHGNHIM  217 (434)
T ss_pred             cHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHhCCCCCc
Confidence            99988 555678999999999999999999999765   89999998776543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=204.04  Aligned_cols=151  Identities=17%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             ccccCCCCChHHHHHHHcC--CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhc---CcHHHHHHHHhhCCCccccccC
Q 045346           15 IKETDQYGWTPIHYAAYYG--NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGR---GHARTVETILSLSPDCYELVDN   89 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~   89 (352)
                      ++..|..|.||||+|+..+  +.+++++|+++|+++ +.+++..|.||||+|+..   ++.++++.|+++|+++ +.+|.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCC
Confidence            3455556666666666533  556666666666655 444323566666665542   3456666666666665 55566


Q ss_pred             CCCchhHHHHh--cCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHH-HHhcCChHHHHHHHhhcCccccccccCCcchH
Q 045346           90 KGWNFLHYAMV--SFRVEQLTNLLENNPLARSLINEGDAMENTPLHV-LAAVRPKEFHAVMIKKTQANYDAVNKRNVSVR  166 (352)
Q Consensus        90 ~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~-A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl  166 (352)
                      +|+||||+|+.  .++.+++++|++    .|.++|.+|.+|+||||. |+..++.+++ .+|.+.|++++.+|..|+||+
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~----~gadin~~d~~g~t~Lh~~a~~~~~~~iv-~~Ll~~Gadi~~~d~~g~tpl  196 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLID----SGVSFLNKDFDNNNILYSYILFHSDKKIF-DFLTSLGIDINETNKSGYNCY  196 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHH----cCCCcccccCCCCcHHHHHHHhcCCHHHH-HHHHHcCCCCCCCCCCCCCHH
Confidence            66666666554  245566666665    455566666666666664 3334444555 344445666666666666666


Q ss_pred             HHHhhc
Q 045346          167 HIFSYG  172 (352)
Q Consensus       167 ~~a~~~  172 (352)
                      |+|..+
T Consensus       197 ~la~~~  202 (209)
T PHA02859        197 DLIKFR  202 (209)
T ss_pred             HHHhhh
Confidence            666543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=229.81  Aligned_cols=178  Identities=22%  Similarity=0.281  Sum_probs=127.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHH---------------------------------------------
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYG---------------------------------------------   36 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~---------------------------------------------   36 (352)
                      |+++.|++ +|++++.+|..|+||||+||..|+.+                                             
T Consensus        51 e~vk~Ll~-~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~  129 (477)
T PHA02878         51 DVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQ  129 (477)
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcc
Confidence            45666665 67788888888888888888765543                                             


Q ss_pred             -------------------HHHHHhhcCCCccccccCCC-CCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           37 -------------------MVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        37 -------------------~v~~Ll~~~~~~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                                         ++++|+++|+++ +.++ .. |.||||+|+.+|+.++++.|+++|+++ +.+|..|+||||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~-~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh  206 (477)
T PHA02878        130 TIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKD-RHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLH  206 (477)
T ss_pred             cCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccC-CCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence                               344444445554 5555 44 788888888888888888888888777 667778888888


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc-CChHHHHHHHhhcCcccccccc-CCcchHHHHhhcCC
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV-RPKEFHAVMIKKTQANYDAVNK-RNVSVRHIFSYGYP  174 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~-~~~~~~~~lL~~~g~~~~~~n~-~g~Tpl~~a~~~~~  174 (352)
                      .|+..|+.++++.|++    .|+++|.+|..|+||||+|+.. ++.+++ ++|.++|++++.++. .|.||||+|..   
T Consensus       207 ~A~~~~~~~iv~~Ll~----~ga~in~~d~~g~TpLh~A~~~~~~~~iv-~~Ll~~gadvn~~~~~~g~TpLh~A~~---  278 (477)
T PHA02878        207 HAVKHYNKPIVHILLE----NGASTDARDKCGNTPLHISVGYCKDYDIL-KLLLEHGVDVNAKSYILGLTALHSSIK---  278 (477)
T ss_pred             HHHHhCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHhcCCHHHH-HHHHHcCCCCCccCCCCCCCHHHHHcc---
Confidence            8888888888888887    6677788888888888888765 456666 455567888877765 67888888832   


Q ss_pred             CcHHHHHHHHHHcCCCCCC
Q 045346          175 KLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       175 ~~~~~i~~~l~~~g~~~~~  193 (352)
                        ..+++++|.+.|+++..
T Consensus       279 --~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        279 --SERKLKLLLEYGADINS  295 (477)
T ss_pred             --CHHHHHHHHHCCCCCCC
Confidence              23667777777766544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2e-27  Score=229.60  Aligned_cols=179  Identities=23%  Similarity=0.301  Sum_probs=125.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHH--HcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAA--YYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETIL   77 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll   77 (352)
                      |+++.|++ .|++++..|..|.||||+|+  ..|+.+++++|+++|++. +..+ ..|.||||+|+..|  +.++++.|+
T Consensus        87 ~iv~~Ll~-~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~iv~~Ll  163 (480)
T PHA03100         87 EIVKLLLE-YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKN-SDGENLLHLYLESNKIDLKILKLLI  163 (480)
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccC-CCCCcHHHHHHHcCCChHHHHHHHH
Confidence            34455444 66777777888888888888  778888888888877776 6666 67888888888887  788888888


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCC------CcHHHHHHhcCC--hHHHHHHHh
Q 045346           78 SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAME------NTPLHVLAAVRP--KEFHAVMIK  149 (352)
Q Consensus        78 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G------~T~Lh~A~~~~~--~~~~~~lL~  149 (352)
                      ++|+++ +..|..|.||||+|+..|+.+++++|++    .|++++..+..|      .||||.|+..++  .+.+ .+|.
T Consensus       164 ~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv-~~Ll  237 (480)
T PHA03100        164 DKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLD----NGADINAGDIETLLFTIFETPLHIAACYNEITLEVV-NYLL  237 (480)
T ss_pred             HCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHH----cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHH-HHHH
Confidence            888777 6677778888888888888788877777    556666666666      666666666665  5555 3344


Q ss_pred             hcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          150 KTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       150 ~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      +.|++++.+|..|.||||+|+..++.   +++++|.+.|+++.
T Consensus       238 ~~g~din~~d~~g~TpL~~A~~~~~~---~iv~~Ll~~gad~n  277 (480)
T PHA03100        238 SYGVPINIKDVYGFTPLHYAVYNNNP---EFVKYLLDLGANPN  277 (480)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence            46666666666666666666666443   66666666655443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.3e-27  Score=223.56  Aligned_cols=180  Identities=16%  Similarity=0.117  Sum_probs=155.7

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.++. .|.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.++++.|+++++
T Consensus       105 ~~i~~ll~-~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~  181 (434)
T PHA02874        105 DMIKTILD-CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIED-DNGCYPIHIAIKHNFFDIIKLLLEKGA  181 (434)
T ss_pred             HHHHHHHH-CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence            34444444 77889999999999999999999999999999999998 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +..|..|+||||+|++.|+.+++++|++    .+.+++.++..|.||||.|+..+. +.+ .+|. .|++++.+|.+
T Consensus       182 ~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~----~g~~i~~~~~~g~TpL~~A~~~~~-~~i-~~Ll-~~~~in~~d~~  253 (434)
T PHA02874        182 YA-NVKDNNGESPLHNAAEYGDYACIKLLID----HGNHIMNKCKNGFTPLHNAIIHNR-SAI-ELLI-NNASINDQDID  253 (434)
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHCCh-HHH-HHHH-cCCCCCCcCCC
Confidence            88 7889999999999999999999999999    677888999999999999998775 344 3443 58899999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |+||||+|+..+  ...+++++|.+.|+++...
T Consensus       254 G~TpLh~A~~~~--~~~~iv~~Ll~~gad~n~~  284 (434)
T PHA02874        254 GSTPLHHAINPP--CDIDIIDILLYHKADISIK  284 (434)
T ss_pred             CCCHHHHHHhcC--CcHHHHHHHHHCcCCCCCC
Confidence            999999998764  2347889999888776543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=227.08  Aligned_cols=160  Identities=21%  Similarity=0.206  Sum_probs=144.8

Q ss_pred             HHHHHHHhccccccccCCC-CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            3 ALRKLVEEKKKMIKETDQY-GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +++.|+ +.|++++.+|.. |+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.++++.|++.|+
T Consensus       149 iv~~Ll-~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        149 ITKLLL-SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPD-KTNNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHH-HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            455544 589999999999 999999999999999999999999998 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhc-CCHHHHHHHHhcCchhhhhhccCCC-CCCcHHHHHHhcCChHHHHHHHhhcCccccccc
Q 045346           82 DCYELVDNKGWNFLHYAMVS-FRVEQLTNLLENNPLARSLINEGDA-MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n  159 (352)
                      ++ +.+|..|+||||+|+.. ++.++++.|++    .|+++|.++. .|+||||+|+  ++.+.+ .+|.+.|+|++.+|
T Consensus       226 ~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~----~gadvn~~~~~~g~TpLh~A~--~~~~~v-~~Ll~~gadin~~d  297 (477)
T PHA02878        226 ST-DARDKCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTALHSSI--KSERKL-KLLLEYGADINSLN  297 (477)
T ss_pred             CC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHH----cCCCCCccCCCCCCCHHHHHc--cCHHHH-HHHHHCCCCCCCcC
Confidence            99 88999999999999975 68999999999    7889999886 7999999994  455666 66777999999999


Q ss_pred             cCCcchHHHHhhcC
Q 045346          160 KRNVSVRHIFSYGY  173 (352)
Q Consensus       160 ~~g~Tpl~~a~~~~  173 (352)
                      .+|+||+|+|+..+
T Consensus       298 ~~g~TpL~~A~~~~  311 (477)
T PHA02878        298 SYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCCCHHHHHHHHc
Confidence            99999999998754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.7e-27  Score=226.43  Aligned_cols=177  Identities=24%  Similarity=0.226  Sum_probs=123.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcC--CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYG--NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   79 (352)
                      |+++.|++ +|.+++..|..|.||||+|+..|  +.++++.|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++
T Consensus       122 ~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        122 SIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKN-RYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             HHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-cccc-CCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            34455444 66667777777777777777777  777777777777766 6666 5777777777777777777777777


Q ss_pred             CCCccccccCCC------CchhHHHHhcCC--HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhc
Q 045346           80 SPDCYELVDNKG------WNFLHYAMVSFR--VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKT  151 (352)
Q Consensus        80 ~~~~~~~~d~~g------~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (352)
                      |+++ +..+..|      .||||.|+..++  .++++.|++    .|.++|.+|..|+||||+|+..|+.+++ ++|.+.
T Consensus       199 ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~----~g~din~~d~~g~TpL~~A~~~~~~~iv-~~Ll~~  272 (480)
T PHA03100        199 GADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS----YGVPINIKDVYGFTPLHYAVYNNNPEFV-KYLLDL  272 (480)
T ss_pred             CCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHHc
Confidence            7776 5566666      677777777777  777777777    5667777777777777777777776666 344456


Q ss_pred             CccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          152 QANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       152 g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      |++++.+|.+|+||+|+|+..++.   +++++|.+.|.+
T Consensus       273 gad~n~~d~~g~tpl~~A~~~~~~---~iv~~Ll~~g~~  308 (480)
T PHA03100        273 GANPNLVNKYGDTPLHIAILNNNK---EIFKLLLNNGPS  308 (480)
T ss_pred             CCCCCccCCCCCcHHHHHHHhCCH---HHHHHHHhcCCC
Confidence            777777777777777777776443   677777776653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=5.6e-27  Score=230.09  Aligned_cols=160  Identities=14%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             HHHHHHHHhcc-cccccc-CCCCChHHHHHHHc--CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCc--HHHHHH
Q 045346            2 AALRKLVEEKK-KMIKET-DQYGWTPIHYAAYY--GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH--ARTVET   75 (352)
Q Consensus         2 e~v~~lL~~~~-~~~~~~-d~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~~v~~   75 (352)
                      |+++.|++ +| +++|.+ |..|+||||+|+..  ++.+++++|+++|+++ +.+| ..|.||||+|+..|+  .++++.
T Consensus       156 eiVk~LLe-~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD-~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        156 DLIKYMVD-VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQN-NHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             HHHHHHHH-CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCCCHHHHHH
Confidence            44555554 34 566665 66666666665432  4456666666666665 5555 566666666666663  366666


Q ss_pred             HHhhCCCccccccCCCCchhHHH-------------------------------------HhcCCHHHHHHHHhcCchhh
Q 045346           76 ILSLSPDCYELVDNKGWNFLHYA-------------------------------------MVSFRVEQLTNLLENNPLAR  118 (352)
Q Consensus        76 Ll~~~~~~~~~~d~~g~t~Lh~A-------------------------------------~~~~~~~~v~~Ll~~~~~~~  118 (352)
                      |+++|+++ +.+|..|+||||.|                                     +++|+.++++.|++    .|
T Consensus       233 LLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe----~G  307 (764)
T PHA02716        233 IIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ----PG  307 (764)
T ss_pred             HHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh----CC
Confidence            66666665 55666666666643                                     23455666666666    55


Q ss_pred             hhhccCCCCCCcHHHHHHh--cCChHHHHHHHhhcCccccccccCCcchHHHHh
Q 045346          119 SLINEGDAMENTPLHVLAA--VRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~--~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      +++|.+|.+|+||||+|+.  .++.+++ ++|.+.|++++.+|+.|+||||+|+
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIV-klLLe~GADIN~kD~~G~TPLH~A~  360 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILRHNISTDII-KLLHEYGNDLNEPDNIGNTVLHTYL  360 (764)
T ss_pred             CceeccCCCCCCHHHHHHHHhCCCchHH-HHHHHcCCCCccCCCCCCCHHHHHH
Confidence            5666666666666666543  2344555 3344566666666666666666654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=9.8e-27  Score=228.39  Aligned_cols=149  Identities=19%  Similarity=0.200  Sum_probs=116.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCC--HHHHHHHhhcCCCccccccCCCCCcHHHHH---------------
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGN--YGMVNLLLEIDQSASNIANKDRKMTALHLA---------------   64 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A---------------   64 (352)
                      |+++.|+ ++|++++.+|.+|+||||+|++.|+  .+++++|+++|+++ +.++ ..|.||||.|               
T Consensus       193 eIVklLL-e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD-~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        193 DILEWLC-NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKC-VNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             HHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHhhhccCHHHHHHH
Confidence            4455555 4788899999999999999998885  48899999998887 8888 7899999865               


Q ss_pred             ----------------------HhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHh--cCCHHHHHHHHhcCchhhhh
Q 045346           65 ----------------------AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV--SFRVEQLTNLLENNPLARSL  120 (352)
Q Consensus        65 ----------------------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~  120 (352)
                                            +..|+.++++.|++.|+++ +.+|.+|+||||+|+.  +++.+++++|++    .|++
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe----~GAD  344 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHE----YGND  344 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHH----cCCC
Confidence                                  3457788888888888887 7788889999998764  457788888888    6788


Q ss_pred             hccCCCCCCcHHHHHHhc--------------CChHHHHHHHhhcCccccccc
Q 045346          121 INEGDAMENTPLHVLAAV--------------RPKEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus       121 ~n~~d~~G~T~Lh~A~~~--------------~~~~~~~~lL~~~g~~~~~~n  159 (352)
                      +|.+|..|+||||+|+..              ++.+++ ++|.++|++++.+|
T Consensus       345 IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVV-klLL~~GADIn~kn  396 (764)
T PHA02716        345 LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVI-QCLISLGADITAVN  396 (764)
T ss_pred             CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHH-HHHHHCCCCCCCcC
Confidence            888999999999987652              456666 45556788887654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=224.66  Aligned_cols=176  Identities=13%  Similarity=0.139  Sum_probs=109.1

Q ss_pred             ccccccccCCCCChHHHHHHHcC---CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCc---HHHHHHHHhhCCCcc
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYG---NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH---ARTVETILSLSPDCY   84 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~   84 (352)
                      +|+++|.+|.+|+||||+|++.+   +.+++++|+++|+++ +.+| ..|.||||+|+..|+   .+++++|+++|+++.
T Consensus        98 ~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d-~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798         98 NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLD-KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccC-CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence            55556666656666666665543   455566666655555 5555 555666666665555   556666666655552


Q ss_pred             ccccCCCCchhHHHHhc----CCHHHHHHHHhcCch-----------------------------------hhhhhccCC
Q 045346           85 ELVDNKGWNFLHYAMVS----FRVEQLTNLLENNPL-----------------------------------ARSLINEGD  125 (352)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~-----------------------------------~~~~~n~~d  125 (352)
                      ...+..|.||||.++.+    ++.+++++|++.+..                                   .+.++|.+|
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            22234455666655442    245555555543210                                   013566778


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          126 AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       126 ~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      ..|+||||+|+..++.+.++ +|.+.|+|++.+|..|+||||+|+..++.   ++++.+.+.+..+.
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~-~LL~~GAdin~~d~~G~TpL~~A~~~~~~---~iv~~lL~~~~~~~  318 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFE-YLLQLGGDINIITELGNTCLFTAFENESK---FIFNSILNKKPNKN  318 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHH-HHHHcCCcccccCCCCCcHHHHHHHcCcH---HHHHHHHccCCCHH
Confidence            88888888888888888774 44458888888888888888888887554   77777777665553

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=220.08  Aligned_cols=177  Identities=16%  Similarity=0.183  Sum_probs=149.7

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCC--HHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGN--YGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   79 (352)
                      |+++.|++ +|++++.+|.+|+||||+|+..++  .+++++|+++|+++....+ ..|.|||| |+..|+.++++.|++.
T Consensus        86 eiv~lLL~-~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d-~~g~tpL~-aa~~~~~~vv~~Ll~~  162 (446)
T PHA02946         86 RIVAMLLT-HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD-EEGCGPLL-ACTDPSERVFKKIMSI  162 (446)
T ss_pred             HHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccC-CCCCcHHH-HHHCCChHHHHHHHhc
Confidence            45666655 889999999999999999998764  8999999999999843467 79999998 6778999999999999


Q ss_pred             CCCccccccCCCCchhHHHHhcCC--HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC--ChHHHHHHHhhcCccc
Q 045346           80 SPDCYELVDNKGWNFLHYAMVSFR--VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR--PKEFHAVMIKKTQANY  155 (352)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~--~~~~~~~lL~~~g~~~  155 (352)
                      ++++ +.+|..|+||||+|+..++  .+++++|++    .|+++|.+|.+|+||||+|+..+  +.+++ .+|. .|+++
T Consensus       163 gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~----~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv-~lLl-~gadi  235 (446)
T PHA02946        163 GFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMK----LGISPSKPDHDGNTPLHIVCSKTVKNVDII-NLLL-PSTDV  235 (446)
T ss_pred             cccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCCcHHHH-HHHH-cCCCC
Confidence            9998 8899999999999987554  689999999    78999999999999999999986  55666 4444 48999


Q ss_pred             cccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          156 DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      +.+|++|+||||+|+..++.  .++++.|.+.|..
T Consensus       236 n~~d~~G~TpLh~A~~~~~~--~~~~~~Ll~~g~~  268 (446)
T PHA02946        236 NKQNKFGDSPLTLLIKTLSP--AHLINKLLSTSNV  268 (446)
T ss_pred             CCCCCCCCCHHHHHHHhCCh--HHHHHHHHhCCCC
Confidence            99999999999999988642  3666777766543

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=3.9e-27  Score=180.86  Aligned_cols=109  Identities=41%  Similarity=0.604  Sum_probs=96.3

Q ss_pred             cchhhhhcchhHHHHHHHHHHHhhhhccCCCcccCC---CCccccccCc-ccchhHhHhHHHHHHHHHHHHHHHHHhhhh
Q 045346          213 KDDYKDTRESHLVVAALIATVAFAAAFTIPGGYRSE---NGTAILRRNK-AFQAFIVADSIAMVFSLSAVFTHFLMSLKI  288 (352)
Q Consensus       213 ~~~~~~~~~s~~vvA~LIatvtfaa~~t~Pgg~~~~---~g~~~~~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~~~~~  288 (352)
                      +||+++.++++++||+||||+||||+++|||||||+   .|+|++.+++ .|+.|+++|++||++|++++++++ ..+.+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~~~   79 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGLDD   79 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence            479999999999999999999999999999999886   4999998877 999999999999999999999976 43422


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 045346          289 EATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAM  324 (352)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  324 (352)
                        ..+..++.+..+..++++++.+|++||++|+|+|
T Consensus        80 --~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   80 --FRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence              3455556788999999999999999999999865

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=222.57  Aligned_cols=182  Identities=17%  Similarity=0.145  Sum_probs=148.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHc---CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhc--CcHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYY---GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGR--GHARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~--g~~~~v~~L   76 (352)
                      |+++.| .++|+++|.+|.+|+||||.|+..   |+.+++++|+++|+++.+.++ ..|.||||+|+..  ++.+++++|
T Consensus        89 ~iv~~L-l~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         89 KIVKLL-LKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHH-HHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHH
Confidence            345444 458999999999999999988765   679999999999998855677 7999999998764  689999999


Q ss_pred             HhhCCCccccccCCCCchhHHHHhcC----CHHHHHHHHhcCch----------------------------------hh
Q 045346           77 LSLSPDCYELVDNKGWNFLHYAMVSF----RVEQLTNLLENNPL----------------------------------AR  118 (352)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~----~~~~v~~Ll~~~~~----------------------------------~~  118 (352)
                      +++|+++....+..|.||||+|+.++    +.+++++|++.+..                                  .+
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~  246 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY  246 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhC
Confidence            99999984446889999999998754    88999999885321                                  12


Q ss_pred             hhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCC
Q 045346          119 SLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~  189 (352)
                      +++|.+|.+|+||||+|+..++.+.++ +|.+.|+|++.+|..|+||||+|+..++.   ++++.+.+.+.
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~-~LL~~Gadin~~d~~G~TpL~~A~~~~~~---~iv~~LL~~~p  313 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFN-YLLKLGDDIYNVSKDGDTVLTYAIKHGNI---DMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHH-HHHHcCCCccccCCCCCCHHHHHHHcCCH---HHHHHHHhcCC
Confidence            346778888999999999999988884 55568999999999999999999998655   78888777553

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.9e-26  Score=229.20  Aligned_cols=179  Identities=26%  Similarity=0.258  Sum_probs=121.2

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCC---------------------------
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR---------------------------   56 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------------------   56 (352)
                      +.++|.++|+++|.+|..|+||||+|++.|+.+++++|+++|+++ +..+ ..                           
T Consensus       160 i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~-~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~  237 (682)
T PHA02876        160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIA-LDDLSVLECAVDSKNIDTIKAIIDNRSNI  237 (682)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            345556689999999999999999999999999999999998876 4444 34                           


Q ss_pred             -----------------------------------CCcHHHHHHhcCcH-HHHHHHHhhCCCccccccCCCCchhHHHHh
Q 045346           57 -----------------------------------KMTALHLAAGRGHA-RTVETILSLSPDCYELVDNKGWNFLHYAMV  100 (352)
Q Consensus        57 -----------------------------------g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (352)
                                                         |.||||+|+..|+. ++++.|++.++++ +..|.+|+||||+|+.
T Consensus       238 ~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~  316 (682)
T PHA02876        238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAK  316 (682)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence                                               45555555555543 3555555555554 4455556666666665


Q ss_pred             cC-CHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHH
Q 045346          101 SF-RVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEE  179 (352)
Q Consensus       101 ~~-~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~  179 (352)
                      +| +.+.++.|++    .|.++|.+|..|+||||+|+..+....+..+|.+.|++++.+|..|+||||+|+..++.   +
T Consensus       317 ~g~~~~~v~~Ll~----~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~---~  389 (682)
T PHA02876        317 NGYDTENIRTLIM----LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNV---V  389 (682)
T ss_pred             hCCCHHHHHHHHH----cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCH---H
Confidence            55 3555555555    45566666666666666666644323333556667888888888888888888877554   7


Q ss_pred             HHHHHHHcCCCCC
Q 045346          180 IQKLSKDFGRGQY  192 (352)
Q Consensus       180 i~~~l~~~g~~~~  192 (352)
                      +++.|.+.|+.+.
T Consensus       390 iv~~Ll~~gad~~  402 (682)
T PHA02876        390 IINTLLDYGADIE  402 (682)
T ss_pred             HHHHHHHCCCCcc
Confidence            7777777666543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=6.7e-26  Score=209.15  Aligned_cols=179  Identities=13%  Similarity=-0.027  Sum_probs=156.2

Q ss_pred             HHHHHHhcccccc------ccCCCCChHHHHHHH--cCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHH
Q 045346            4 LRKLVEEKKKMIK------ETDQYGWTPIHYAAY--YGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVET   75 (352)
Q Consensus         4 v~~lL~~~~~~~~------~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~   75 (352)
                      +.++|..++++++      .++..++|+||+++.  .|+.+++++|+++|+++ +..   ++.||||.|+..|+.+++++
T Consensus        92 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~---~~~t~lh~A~~~~~~eIVk~  167 (437)
T PHA02795         92 IISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI---ECLNAYFRGICKKESSVVEF  167 (437)
T ss_pred             HHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC---CCCCHHHHHHHcCcHHHHHH
Confidence            3456667899888      888999999999999  89999999999999998 553   45899999999999999999


Q ss_pred             HHhhCCCccccc-----cCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhh
Q 045346           76 ILSLSPDCYELV-----DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKK  150 (352)
Q Consensus        76 Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (352)
                      |+++|++..+..     +..+.+++|.|.++++.+++++|++    .|+++|.+|.+|+||||+|+..|+.+.++ +|.+
T Consensus       168 Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs----~GADIN~kD~~G~TpLh~Aa~~g~~eiVe-lLL~  242 (437)
T PHA02795        168 ILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP----YIEDINQLDAGGRTLLYRAIYAGYIDLVS-WLLE  242 (437)
T ss_pred             HHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh----CcCCcCcCCCCCCCHHHHHHHcCCHHHHH-HHHH
Confidence            999997553433     2347899999999999999999999    78999999999999999999999999984 5557


Q ss_pred             cCccccccccCCcchHHHHhhcCCC-----cHHHHHHHHHHcCCCC
Q 045346          151 TQANYDAVNKRNVSVRHIFSYGYPK-----LKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       151 ~g~~~~~~n~~g~Tpl~~a~~~~~~-----~~~~i~~~l~~~g~~~  191 (352)
                      .|++++.+|..|.||||+|+..++.     ...++++.|.+.|++.
T Consensus       243 ~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        243 NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999999999999999999998853     3568999999987654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=8e-26  Score=217.92  Aligned_cols=180  Identities=19%  Similarity=0.187  Sum_probs=141.7

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHH--HcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHhh
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAA--YYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETILSL   79 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~   79 (352)
                      +.++|.++|++++.+|..|+||||+|+  ..++.++++.|+++|+++ +..+ ..|.||||+|+..+  +.++++.|++.
T Consensus        99 iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d-~~g~tpL~~a~~~~~~~~~iv~~Ll~~  176 (471)
T PHA03095         99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALD-LYGMTPLAVLLKSRNANVELLRLLIDA  176 (471)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccC-CCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            344555588999999999999999999  456789999999999888 7788 78999999988765  67889999999


Q ss_pred             CCCccccccCCCCchhHHHHhc--CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChH-HHHHHHhhcCcccc
Q 045346           80 SPDCYELVDNKGWNFLHYAMVS--FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKE-FHAVMIKKTQANYD  156 (352)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~-~~~~lL~~~g~~~~  156 (352)
                      |+++ +..|..|+||||+++..  ++.++++.|++    .|++++.+|..|+||||+|+..++.. .....+...|+++|
T Consensus       177 g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~----~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din  251 (471)
T PHA03095        177 GADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIR----AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN  251 (471)
T ss_pred             CCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC
Confidence            9888 44588899999988864  66788888887    67788888888888888888877542 12245556788888


Q ss_pred             ccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          157 AVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      .+|.+|+||||+|+..++.   +++++|.+.|+++..
T Consensus       252 ~~d~~g~TpLh~A~~~~~~---~~v~~LL~~gad~n~  285 (471)
T PHA03095        252 ARNRYGQTPLHYAAVFNNP---RACRRLIALGADINA  285 (471)
T ss_pred             CcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCcc
Confidence            8888888888888877554   777777777766644

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=216.03  Aligned_cols=183  Identities=23%  Similarity=0.267  Sum_probs=157.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcC---CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC-cHHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYG---NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG-HARTVETIL   77 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll   77 (352)
                      |+++.|+. .|++++.+|..|.||||+|+..|   +.++++.|+++|+++ +.++ ..|.||||+|+..| +.+++++|+
T Consensus        28 ~~v~~Ll~-~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~-~~g~TpLh~A~~~~~~~~iv~lLl  104 (471)
T PHA03095         28 EEVRRLLA-AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPE-RCGFTPLHLYLYNATTLDVIKLLI  104 (471)
T ss_pred             HHHHHHHH-cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCCcHHHHHHHH
Confidence            56777765 78999999999999999999998   899999999999998 8888 79999999999999 599999999


Q ss_pred             hhCCCccccccCCCCchhHHHH--hcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC--ChHHHHHHHhhcCc
Q 045346           78 SLSPDCYELVDNKGWNFLHYAM--VSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR--PKEFHAVMIKKTQA  153 (352)
Q Consensus        78 ~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~--~~~~~~~lL~~~g~  153 (352)
                      ++|+++ +.+|..|+||||+|+  ..++.++++.|++    .|.+++.+|..|.||||+|+..+  +.+++ ++|.+.|+
T Consensus       105 ~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~----~gad~~~~d~~g~tpL~~a~~~~~~~~~iv-~~Ll~~g~  178 (471)
T PHA03095        105 KAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLR----KGADVNALDLYGMTPLAVLLKSRNANVELL-RLLIDAGA  178 (471)
T ss_pred             HcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCCCHHHH-HHHHHcCC
Confidence            999998 889999999999999  5568899999999    78899999999999999998876  45566 56667899


Q ss_pred             cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      +++..|..|+||+|+++.... ...++++.+.+.|..|...
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~-~~~~i~~~Ll~~g~~~~~~  218 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFK-PRARIVRELIRAGCDPAAT  218 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCC-CcHHHHHHHHHcCCCCccc
Confidence            999889999999999887533 2347788888777665443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=212.98  Aligned_cols=186  Identities=21%  Similarity=0.170  Sum_probs=153.5

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHh----
Q 045346            3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS----   78 (352)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~----   78 (352)
                      .++.|+ ..+.++|..|+.|.||||+||..++.|..+.|++.++++ ...| .+|.+|+|.|+++|..++.+.++.    
T Consensus       136 ~L~~Ll-~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~-~~~~~~iH~aa~s~s~e~mEi~l~~~g~  212 (929)
T KOG0510|consen  136 CLKLLL-DYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSD-IDGNFPIHEAARSGSKECMEIFLPEHGY  212 (929)
T ss_pred             HHHHHH-HhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC-Cccc-CcCCchHHHHHHhcchhhhhhhhccccc
Confidence            344444 466999999999999999999999999888999998888 5666 789999999999999999999988    


Q ss_pred             -hCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCch-----------hhhhhccCCCCCCcHHHHHHhcCChHHHHH
Q 045346           79 -LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL-----------ARSLINEGDAMENTPLHVLAAVRPKEFHAV  146 (352)
Q Consensus        79 -~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-----------~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  146 (352)
                       +...+ +..|..|.||||.|++.|+.+.++..++.+..           .+..+|..|++|.||||+||+.|+++.+ .
T Consensus       213 ~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~sv-d  290 (929)
T KOG0510|consen  213 ERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESV-D  290 (929)
T ss_pred             hhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHH-H
Confidence             44455 77788999999999999999999999986542           2356889999999999999999999999 5


Q ss_pred             HHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHH------------cCCCCCCccc
Q 045346          147 MIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD------------FGRGQYSNGV  196 (352)
Q Consensus       147 lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~------------~g~~~~~~~~  196 (352)
                      .|+..|++++.+|+++.||||.|+..|+.   .-++.|.+            .|.+|++-++
T Consensus       291 ~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~---ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  291 NLLGFGASINSKNKDEESPLHFAAIYGRI---NTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             HHHHcCCcccccCCCCCCchHHHHHcccH---HHHHHHHhCcCccccccccccCCCchhhhh
Confidence            66669999999999999999999999866   22222222            6777888775

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.1e-25  Score=223.91  Aligned_cols=182  Identities=21%  Similarity=0.166  Sum_probs=142.0

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcC-CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhc-CcHHHHHHHHhhCC
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYG-NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGR-GHARTVETILSLSP   81 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~   81 (352)
                      +.++|.+.|++++.+|.+|+||||+|+..| +.+.++.|++.|+++ +.++ ..|.||||+|+.. ++.++++.|++.|+
T Consensus       289 iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d-~~g~TpLh~A~~~~~~~~iv~lLl~~ga  366 (682)
T PHA02876        289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAAD-RLYITPLHQASTLDRNKDIVITLLELGA  366 (682)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcc-cCCCcHHHHHHHhCCcHHHHHHHHHcCC
Confidence            334455577778888888888888888877 477788888877777 6777 6788888888774 46778888888888


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|+||||+|+..|+.++++.|++    .|++++..|..|.||||+|+..++.....++|.+.|+++|.+|.+
T Consensus       367 di-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~----~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~  441 (682)
T PHA02876        367 NV-NARDYCDKTPIHYAAVRNNVVIINTLLD----YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKD  441 (682)
T ss_pred             CC-ccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCC
Confidence            87 7788888888888888888888888888    677888888888888888887766544446677789999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |+||||+|+..+  ...+++++|.+.|+++...
T Consensus       442 G~TpLh~Aa~~~--~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        442 LSTPLHYACKKN--CKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             CChHHHHHHHhC--CcHHHHHHHHHCCCCCCCC
Confidence            999999998764  2347888898888776543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=216.14  Aligned_cols=183  Identities=15%  Similarity=0.144  Sum_probs=152.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHc-----CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC---cHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYY-----GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG---HARTV   73 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g---~~~~v   73 (352)
                      |+++.|++ +|+++|.+|..|.||||.|+..     ++.+++++|+++|+++ +.++ ..|.||||+|+.++   +.+++
T Consensus        52 ~iv~~Ll~-~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d-~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         52 DIVKLFIN-LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKN-SDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCC-CCcCcHHHHHHHcCCcChHHHH
Confidence            45666665 8999999999999999999864     6789999999999998 8899 89999999999986   78999


Q ss_pred             HHHHhhCCCccccccCCCCchhHHHHhcCC---HHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcC----ChHHHH
Q 045346           74 ETILSLSPDCYELVDNKGWNFLHYAMVSFR---VEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVR----PKEFHA  145 (352)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~----~~~~~~  145 (352)
                      ++|+++|+++ +.+|.+|.||||+|++.++   .++++.|++    .|.++|.+| ..|.||||.++..+    +.++++
T Consensus       129 ~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~----~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        129 LFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE----KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             HHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH----hCCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            9999999999 8899999999999999987   999999999    788898885 57899999887643    344442


Q ss_pred             HHHh--------------------------------------hcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHc
Q 045346          146 VMIK--------------------------------------KTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDF  187 (352)
Q Consensus       146 ~lL~--------------------------------------~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~  187 (352)
                      .|+.                                      ..++|+|.+|..|+||||+|+..++.   +++++|.+.
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~---~~v~~LL~~  280 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR---KIFEYLLQL  280 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH---HHHHHHHHc
Confidence            2221                                      12456777889999999999998655   899999998


Q ss_pred             CCCCCCcc
Q 045346          188 GRGQYSNG  195 (352)
Q Consensus       188 g~~~~~~~  195 (352)
                      |+++....
T Consensus       281 GAdin~~d  288 (489)
T PHA02798        281 GGDINIIT  288 (489)
T ss_pred             CCcccccC
Confidence            87765433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=6.5e-26  Score=214.87  Aligned_cols=173  Identities=20%  Similarity=0.259  Sum_probs=148.4

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCcc--------------ccccCCCCCcHHHHHHhcCcHHHHHHH
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS--------------NIANKDRKMTALHLAAGRGHARTVETI   76 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--------------~~~~~~~g~tpLh~A~~~g~~~~v~~L   76 (352)
                      ++..+|..|++|.||||.|+..|+.++++.+|+.++...              +..| ++|.||||+||+.|+.++++.|
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d-~dg~tpLH~a~r~G~~~svd~L  292 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED-NDGCTPLHYAARQGGPESVDNL  292 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc-ccCCchHHHHHHcCChhHHHHH
Confidence            456788888889999999999999999999998765543              3346 7899999999999999999999


Q ss_pred             HhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccc
Q 045346           77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYD  156 (352)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~  156 (352)
                      +..|+++ +.++.++.||||.|+.+|+.+.++.|++..  .-.+.|..|..|+||||+|++.|+..++ ++|.+.|++..
T Consensus       293 l~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~--~~rllne~D~~g~tpLHlaa~~gH~~v~-qlLl~~GA~~~  368 (929)
T KOG0510|consen  293 LGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQES--DTRLLNESDLHGMTPLHLAAKSGHDRVV-QLLLNKGALFL  368 (929)
T ss_pred             HHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCc--CccccccccccCCCchhhhhhcCHHHHH-HHHHhcChhhh
Confidence            9999998 889999999999999999999999999932  3467899999999999999999987777 67778999887


Q ss_pred             ---ccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          157 ---AVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       157 ---~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                         ..|.+|.||||.|+..|+.   ..++.|..+|++-
T Consensus       369 ~~~e~D~dg~TaLH~Aa~~g~~---~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  369 NMSEADSDGNTALHLAAKYGNT---SAVQKLISHGADI  403 (929)
T ss_pred             cccccccCCchhhhHHHHhccH---HHHHHHHHcCCce
Confidence               5699999999999999766   7788888777554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=7.3e-25  Score=187.74  Aligned_cols=166  Identities=13%  Similarity=0.115  Sum_probs=139.7

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHhhCCCcccccc-CCC
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETILSLSPDCYELVD-NKG   91 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d-~~g   91 (352)
                      .+...+.++||||+|++.|+.+.++.|++..    +..+ ..|.||||+|+.++  +.+++++|+++|+++ +.++ ..|
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~-~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g   87 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCN-DLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNN   87 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcHHHHHHHHHhh----hccC-ccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCC
Confidence            3445567899999999999999999999752    5567 78999999999864  899999999999999 6665 589


Q ss_pred             CchhHHHHhc---CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc--CChHHHHHHHhhcCccccccccCCcchH
Q 045346           92 WNFLHYAMVS---FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV--RPKEFHAVMIKKTQANYDAVNKRNVSVR  166 (352)
Q Consensus        92 ~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~--~~~~~~~~lL~~~g~~~~~~n~~g~Tpl  166 (352)
                      +||||+|+..   ++.++++.|++    .|+++|.+|.+|.||||+|+..  ++.+++ .+|.+.|++++.+|.+|.||+
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d~~G~TpLh~a~~~~~~~~~iv-~~Li~~gadin~~d~~g~t~L  162 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILID----SGSSITEEDEDGKNLLHMYMCNFNVRINVI-KLLIDSGVSFLNKDFDNNNIL  162 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhccCCHHHH-HHHHHcCCCcccccCCCCcHH
Confidence            9999998864   47899999999    7899999999999999999864  567777 566679999999999999999


Q ss_pred             HHH-hhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          167 HIF-SYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       167 ~~a-~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |.+ ...+   ..+++++|.+.|..+...
T Consensus       163 h~~a~~~~---~~~iv~~Ll~~Gadi~~~  188 (209)
T PHA02859        163 YSYILFHS---DKKIFDFLTSLGIDINET  188 (209)
T ss_pred             HHHHHhcC---CHHHHHHHHHcCCCCCCC
Confidence            965 4443   358999999998876543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.2e-25  Score=216.52  Aligned_cols=175  Identities=14%  Similarity=0.116  Sum_probs=143.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHc---CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC----------
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYY---GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG----------   68 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g----------   68 (352)
                      +.+++++. ++..++.+|++|+||||+|+..   |+.+++++|+++|+++ +.++ ..|.||||+|+..|          
T Consensus        13 ~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~-~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         13 DELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKN-WRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccC-CCCCCHHHHHHHcCChhHHHHHHH
Confidence            45778886 6666788899999999997655   7899999999999988 7777 78999999888644          


Q ss_pred             -------------------------cHHHHHHHHhhCCCccccccCCCCchhHHHH--hcCCHHHHHHHHhcCchhhhhh
Q 045346           69 -------------------------HARTVETILSLSPDCYELVDNKGWNFLHYAM--VSFRVEQLTNLLENNPLARSLI  121 (352)
Q Consensus        69 -------------------------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~~v~~Ll~~~~~~~~~~  121 (352)
                                               +.+++++|+++|+++ +.+|.+|+||||.++  .+|+.+++++|++    .|+++
T Consensus        90 ~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~----~Ga~v  164 (661)
T PHA02917         90 ALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE----NGCSV  164 (661)
T ss_pred             HHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH----cCCCc
Confidence                                     456777888888888 788999999999653  5789999999999    78888


Q ss_pred             ccCCCC---C-----------CcHHHHHHh-----------cCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCc
Q 045346          122 NEGDAM---E-----------NTPLHVLAA-----------VRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL  176 (352)
Q Consensus       122 n~~d~~---G-----------~T~Lh~A~~-----------~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~  176 (352)
                      |.+|..   |           .||||+|+.           .++.+++ ++|.++|+|++.+|.+|.||||+|+.+++..
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv-~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV-KCLINHGIKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH-HHHHHCCCCcccCCCCCCcHHHHHHHcCCCc
Confidence            866542   3           599999986           3466777 5666799999999999999999999988653


Q ss_pred             HHHHHHHHHH
Q 045346          177 KEEIQKLSKD  186 (352)
Q Consensus       177 ~~~i~~~l~~  186 (352)
                       .++++.|.+
T Consensus       244 -~eivk~Li~  252 (661)
T PHA02917        244 -IDIVKLLMK  252 (661)
T ss_pred             -HHHHHHHHh
Confidence             368888865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=6e-25  Score=196.84  Aligned_cols=172  Identities=22%  Similarity=0.205  Sum_probs=150.5

Q ss_pred             HHHHHHHHhcccccccc--------CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHH
Q 045346            2 AALRKLVEEKKKMIKET--------DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV   73 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~--------d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v   73 (352)
                      +++++|+++.++.+...        .-+|-+||..|+..||.++||.|+++++++ |... ....|||--||.-|+.++|
T Consensus        56 ~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT-~TNStPLraACfDG~leiv  133 (615)
T KOG0508|consen   56 DVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTT-RTNSTPLRAACFDGHLEIV  133 (615)
T ss_pred             HHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-cccc-ccCCccHHHHHhcchhHHH
Confidence            57888888776655433        336889999999999999999999999888 6555 5677999999999999999


Q ss_pred             HHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      ++|+++++|+ +..|+.|.|.||+||..|+.+++++|++    .|+++|.++..|||+||.++..|+.+++ ++|..+|+
T Consensus       134 KyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle----~gADvn~ks~kGNTALH~caEsG~vdiv-q~Ll~~ga  207 (615)
T KOG0508|consen  134 KYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLE----QGADVNAKSYKGNTALHDCAESGSVDIV-QLLLKHGA  207 (615)
T ss_pred             HHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHH----hCCCcchhcccCchHHHhhhhcccHHHH-HHHHhCCc
Confidence            9999999999 9999999999999999999999999999    8999999999999999999999999999 56666888


Q ss_pred             cccccccCCcchHHHHhhcCCCcHHHHHHHHH
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSK  185 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~  185 (352)
                      .++ +|..|.|||..|...|+.   .+++.|.
T Consensus       208 ~i~-~d~~GmtPL~~Aa~tG~~---~iVe~L~  235 (615)
T KOG0508|consen  208 KID-VDGHGMTPLLLAAVTGHT---DIVERLL  235 (615)
T ss_pred             eee-ecCCCCchHHHHhhhcch---HHHHHHh
Confidence            776 466699999999999876   5555554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.9e-24  Score=218.88  Aligned_cols=164  Identities=17%  Similarity=0.130  Sum_probs=111.3

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      .+.++.++||.||..|+.++++.|++.|.++ +..| .+|.||||+|+.+|+.++++.|+++|+++ +.+|.+|+||||+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGD-SKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence            3445667777777777777777777777776 6666 67777777777777777777777777776 6677777777777


Q ss_pred             HHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcH
Q 045346           98 AMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLK  177 (352)
Q Consensus        98 A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~  177 (352)
                      |+..|+.++++.|++.    +...  .+..|.++||.|+..|+.+.++. |.++|+|+|.+|++|.||||+|+..++.  
T Consensus       598 A~~~g~~~iv~~L~~~----~~~~--~~~~~~~~L~~Aa~~g~~~~v~~-Ll~~Gadin~~d~~G~TpLh~A~~~g~~--  668 (823)
T PLN03192        598 AISAKHHKIFRILYHF----ASIS--DPHAAGDLLCTAAKRNDLTAMKE-LLKQGLNVDSEDHQGATALQVAMAEDHV--  668 (823)
T ss_pred             HHHhCCHHHHHHHHhc----Cccc--CcccCchHHHHHHHhCCHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHCCcH--
Confidence            7777777777777652    2222  12346677777777777776643 3456777777777777777777776544  


Q ss_pred             HHHHHHHHHcCCCCCCc
Q 045346          178 EEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       178 ~~i~~~l~~~g~~~~~~  194 (352)
                       +++++|.++|+++...
T Consensus       669 -~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        669 -DMVRLLIMNGADVDKA  684 (823)
T ss_pred             -HHHHHHHHcCCCCCCC
Confidence             6777777777665443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=202.90  Aligned_cols=182  Identities=15%  Similarity=0.090  Sum_probs=152.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcC--CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC------cHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYG--NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG------HARTV   73 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g------~~~~v   73 (352)
                      |+++.|++ +|+++|.+ .+|.||||.++..+  +.+++++|+++|+++ +.++  .+.||||.|+.++      +.+++
T Consensus        17 ~~v~~LL~-~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~--~~~tpL~~a~~~~~~~~~~~~~iv   91 (494)
T PHA02989         17 NALEFLLR-TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG--YIETPLCAVLRNREITSNKIKKIV   91 (494)
T ss_pred             HHHHHHHH-cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC--CCCCcHHHHHhccCcchhhHHHHH
Confidence            56676665 89999998 67999998766543  689999999999998 6665  5789999998754      57899


Q ss_pred             HHHHhhCCCccccccCCCCchhHHHHhc---CCHHHHHHHHhcCchhhhhh-ccCCCCCCcHHHHHHhc--CChHHHHHH
Q 045346           74 ETILSLSPDCYELVDNKGWNFLHYAMVS---FRVEQLTNLLENNPLARSLI-NEGDAMENTPLHVLAAV--RPKEFHAVM  147 (352)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~-n~~d~~G~T~Lh~A~~~--~~~~~~~~l  147 (352)
                      +.|+++|+++ +.+|.+|.||||.|+..   ++.+++++|++    .|+++ +.+|..|+||||+|+..  ++.+++ ++
T Consensus        92 ~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~----~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv-~~  165 (494)
T PHA02989         92 KLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLS----KGINVNDVKNSRGYNLLHMYLESFSVKKDVI-KI  165 (494)
T ss_pred             HHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHH----CCCCcccccCCCCCCHHHHHHHhccCCHHHH-HH
Confidence            9999999998 88999999999998765   67899999999    78999 79999999999999864  467777 56


Q ss_pred             HhhcCccccc-cccCCcchHHHHhhcCCC-cHHHHHHHHHHcCCCCCCc
Q 045346          148 IKKTQANYDA-VNKRNVSVRHIFSYGYPK-LKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       148 L~~~g~~~~~-~n~~g~Tpl~~a~~~~~~-~~~~i~~~l~~~g~~~~~~  194 (352)
                      |.++|++++. .|..|.||+|+|...+.. ...+++++|.+.|+.....
T Consensus       166 Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~  214 (494)
T PHA02989        166 LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN  214 (494)
T ss_pred             HHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc
Confidence            6679999998 688999999999876532 4568999999999876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=3.3e-23  Score=211.15  Aligned_cols=160  Identities=21%  Similarity=0.186  Sum_probs=144.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.++.++. .|.++|..|.+|+||||+|++.|+.++++.|+++|.++ +.+| .+|.||||+|+..|+.++++.|++.++
T Consensus       539 ~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d-~~G~TpL~~A~~~g~~~iv~~L~~~~~  615 (823)
T PLN03192        539 ALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRD-ANGNTALWNAISAKHHKIFRILYHFAS  615 (823)
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcC-CCCCCHHHHHHHhCCHHHHHHHHhcCc
Confidence            45666664 78999999999999999999999999999999999998 8889 899999999999999999999998776


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ..   ....|.++||.|+.+|+.++++.|++    .|.++|.+|.+|+||||+|+..|+.+++ .+|.++|++++..|.+
T Consensus       616 ~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~----~Gadin~~d~~G~TpLh~A~~~g~~~iv-~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        616 IS---DPHAAGDLLCTAAKRNDLTAMKELLK----QGLNVDSEDHQGATALQVAMAEDHVDMV-RLLIMNGADVDKANTD  687 (823)
T ss_pred             cc---CcccCchHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCcHHHH-HHHHHcCCCCCCCCCC
Confidence            54   24567899999999999999999999    7899999999999999999999999998 5555799999999999


Q ss_pred             C-cchHHHHhhc
Q 045346          162 N-VSVRHIFSYG  172 (352)
Q Consensus       162 g-~Tpl~~a~~~  172 (352)
                      | .||.+++...
T Consensus       688 g~~t~~~l~~~~  699 (823)
T PLN03192        688 DDFSPTELRELL  699 (823)
T ss_pred             CCCCHHHHHHHH
Confidence            8 8999887543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=172.45  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             ccccccccCCCCChHHHHHHHcCCH----HHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHH---HHHHHhhCCCc
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNY----GMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHART---VETILSLSPDC   83 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~   83 (352)
                      ++.+++..+.++.+++|.|++.|+.    ++++.|.+.+... +.+| ..|+||||+|+..|+.+.   +++|++.++++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d-~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYD-HHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccC-CCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4567788899999999999999998    5666777777776 7778 799999999999988654   89999999998


Q ss_pred             ccccc-CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC
Q 045346           84 YELVD-NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN  162 (352)
Q Consensus        84 ~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g  162 (352)
                       +.+| ..|+||||+|+.+++.+++++|++.   .+.+++.+|.+|+||||+|+..++.+++ .+|.++|++++.++..|
T Consensus        87 -n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~tpL~~A~~~~~~~iv-~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         87 -NARELGTGNTLLHIAASTKNYELAEWLCRQ---LGVNLGAINYQHETAYHIAYKMRDRRMM-EILRANGAVCDDPLSIG  161 (166)
T ss_pred             -CCCCCCCCCcHHHHHHHhCCHHHHHHHHhc---cCCCccCcCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCCCCcccCC
Confidence             7777 5899999999999999999999942   4788999999999999999999998888 55667999999999887


Q ss_pred             cc
Q 045346          163 VS  164 (352)
Q Consensus       163 ~T  164 (352)
                      ..
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            53

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=5.4e-24  Score=185.15  Aligned_cols=161  Identities=20%  Similarity=0.211  Sum_probs=144.6

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhc-----CcHHHHHHHHhhCCCcccccc
Q 045346           14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGR-----GHARTVETILSLSPDCYELVD   88 (352)
Q Consensus        14 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d   88 (352)
                      -+|..|.+|+|+||||++++|.++|+.||+.|....+.++ +-|+||+++++..     .+.++|+.|.+.|. ++-.-.
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-rAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-RAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-cccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhh
Confidence            3788999999999999999999999999999987778888 8999999998864     46789999987764 424446


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHH
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI  168 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~  168 (352)
                      ..|+|+|.+|+.+|+.++++.||.    .|+++|.+|.+|.|+|+.||..|+.+++..||...++|....|.+|.|+|.+
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLa----cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLA----CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHH----ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence            689999999999999999999999    8899999999999999999999999999989988999999999999999999


Q ss_pred             HhhcCCCcHHHH
Q 045346          169 FSYGYPKLKEEI  180 (352)
Q Consensus       169 a~~~~~~~~~~i  180 (352)
                      |...|+.+...+
T Consensus       414 Aleagh~eIa~m  425 (452)
T KOG0514|consen  414 ALEAGHREIAVM  425 (452)
T ss_pred             HHhcCchHHHHH
Confidence            999998844433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.90  E-value=4.1e-23  Score=162.12  Aligned_cols=143  Identities=24%  Similarity=0.217  Sum_probs=132.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH
Q 045346           25 PIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV  104 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (352)
                      -+-+|+..+..+.|+.||+..++..|.+| .+|+||||-|+.+||.+|++.|+..|++. +.+...||||||-||...+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD-~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRD-EDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccc-cccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            35789999999999999999999889999 89999999999999999999999999999 88999999999999999999


Q ss_pred             HHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCCh-HHHHHHHhhcCccccccccCCcchHHHHhhcC
Q 045346          105 EQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPK-EFHAVMIKKTQANYDAVNKRNVSVRHIFSYGY  173 (352)
Q Consensus       105 ~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~  173 (352)
                      +++..|++    +|+++|++.+...||||+||...+. ..+..||.+.++++...|+.+.||+++|.+.+
T Consensus       144 ~va~~LLq----hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQ----HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHh----ccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999    8999999999999999999997754 44557888899999999999999999997763

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.6e-22  Score=167.73  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=108.2

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHhhc------CCCccccccCCCCCcHHHHHHhcCc----HHHHHHHHhhCCCc
Q 045346           14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEI------DQSASNIANKDRKMTALHLAAGRGH----ARTVETILSLSPDC   83 (352)
Q Consensus        14 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~   83 (352)
                      +++.+|..|.||||+|++.|+.++++.|++.      +.++ +.+| ..|.||||+|+..|+    .++++.|++.++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d-~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATD-DAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccC-CCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            4667888999999999999999999988642      3444 7777 789999999999988    57888999999888


Q ss_pred             cccccC-CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc
Q 045346           84 YELVDN-KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus        84 ~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~  154 (352)
                       +.+|. +|+||||+|+..++.+++++|++.   .+.+++.+|.+|+||||+|+..++.+++ .+|.+.++.
T Consensus        91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~---~g~~~~~~n~~g~tpL~~A~~~~~~~iv-~~L~~~~~~  157 (169)
T PHA02741         91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCCQ---PGIDLHFCNADNKSPFELAIDNEDVAMM-QILREIVAT  157 (169)
T ss_pred             -CCCCcCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCCHHHHHHHCCCHHHH-HHHHHHHHH
Confidence             66664 899999999999999999988863   3567888899999999999999887777 445445444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=196.98  Aligned_cols=179  Identities=11%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCC-----------------------------------HHHHHHHhhcCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGN-----------------------------------YGMVNLLLEIDQ   46 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~-----------------------------------~~~v~~Ll~~~~   46 (352)
                      |+++.||. .|++++.+|.+|+||||+|+..|+                                   .+++++|+++|+
T Consensus        49 ~~v~~Ll~-~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Ga  127 (661)
T PHA02917         49 EVVKLLLD-SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGF  127 (661)
T ss_pred             HHHHHHHH-CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCC
Confidence            45666664 889999999999999998887553                                   466777888888


Q ss_pred             CccccccCCCCCcHHHHHH--hcCcHHHHHHHHhhCCCcccccc---CCC-----------CchhHHHHh----------
Q 045346           47 SASNIANKDRKMTALHLAA--GRGHARTVETILSLSPDCYELVD---NKG-----------WNFLHYAMV----------  100 (352)
Q Consensus        47 ~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~d---~~g-----------~t~Lh~A~~----------  100 (352)
                      ++ +.+| ..|.||||.|+  ..|+.+++++|+++|+++ +..|   ..|           .||||+|+.          
T Consensus       128 di-n~~d-~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  204 (661)
T PHA02917        128 DL-SVKC-ENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR  204 (661)
T ss_pred             CC-CccC-CCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhccccccccc
Confidence            88 8888 89999999654  578999999999999998 4333   233           599999986          


Q ss_pred             -cCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCCh--HHHHHHHhhcCcccc----ccccCCcchHHHHhhcC
Q 045346          101 -SFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPK--EFHAVMIKKTQANYD----AVNKRNVSVRHIFSYGY  173 (352)
Q Consensus       101 -~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~--~~~~~lL~~~g~~~~----~~n~~g~Tpl~~a~~~~  173 (352)
                       +++.+++++|++    .|+++|.+|.+|+||||+|+..|+.  ++++. |. .|++.+    ..|..|.||+++|+.-+
T Consensus       205 ~~~~~eiv~~Li~----~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~-Li-~g~d~~~~~~~~~~~~~~~~~~a~yl~  278 (661)
T PHA02917        205 AYVRPEVVKCLIN----HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKL-LM-KGIDNTAYSYIDDLTCCTRGIMADYLN  278 (661)
T ss_pred             ccCcHHHHHHHHH----CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHH-HH-hCCcccccccccCcccccchHHHHHHH
Confidence             468999999999    8899999999999999999999975  57744 44 488775    45667889999998421


Q ss_pred             ------CCcHHHHHHHHHHcCCC
Q 045346          174 ------PKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       174 ------~~~~~~i~~~l~~~g~~  190 (352)
                            .....++++.|.+.|+.
T Consensus       279 ~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        279 SDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             hhccccccchHHHHHHHHhCCCC
Confidence                  12356899999999964

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=9.4e-23  Score=204.32  Aligned_cols=174  Identities=26%  Similarity=0.301  Sum_probs=151.8

Q ss_pred             HHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccc
Q 045346            7 LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYEL   86 (352)
Q Consensus         7 lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~   86 (352)
                      ++.+.+.++|..-..|.||||+|++.|+.++++.|++.++.. +... +.|.+++|.|...++..+++.++++|.++ +.
T Consensus       459 ~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~-~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~  535 (1143)
T KOG4177|consen  459 LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDA-KKGLTPLHLAADEDTVKVAKILLEHGANV-DL  535 (1143)
T ss_pred             hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccc-hhccchhhhhhhhhhHHHHHHHhhcCCce-eh
Confidence            455577788888888888888888888888888888877554 4444 67888888888888888888888888888 88


Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchH
Q 045346           87 VDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVR  166 (352)
Q Consensus        87 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl  166 (352)
                      ++.+|.||||.||.+|+.++|++|++    +|++++.+|+.|+||||.||..|+.+++ .+|.++|+++|..|.+|.|||
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe----~gAdv~ak~~~G~TPLH~Aa~~G~~~i~-~LLlk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLE----HGADVNAKDKLGYTPLHQAAQQGHNDIA-ELLLKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhh----CCccccccCCCCCChhhHHHHcChHHHH-HHHHHcCCCCCcccccCcchh
Confidence            89999999999999999999999999    8999999999999999999999988888 677779999999999999999


Q ss_pred             HHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          167 HIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       167 ~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                      ++|...++.   ++.+.+...+..+
T Consensus       611 ~iA~~lg~~---~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  611 HIAVRLGYL---SVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHHhccc---chhhHHHhccCcc
Confidence            999999877   7777888777774

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=6.5e-23  Score=183.91  Aligned_cols=168  Identities=18%  Similarity=0.116  Sum_probs=145.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcC-CCcccccc-------CCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccC
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEID-QSASNIAN-------KDRKMTALHLAAGRGHARTVETILSLSPDCYELVDN   89 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~~-------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~   89 (352)
                      .+.+|.|||-+||++||.++|++|+++. +++ ....       .-+|-+||-.|+..||.++|+.|+++++++ +....
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~-e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~  115 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASP-EQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTR  115 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCc-cCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccc
Confidence            3567899999999999999999999953 332 1111       146788999999999999999999999988 77778


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346           90 KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      -+.|||--||.-|+.+++++|++    ++++++..|+.|+|.||+||.+|+.++++ +|++.|+|+|.++.+|.|+||.+
T Consensus       116 TNStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~ykGh~~I~q-yLle~gADvn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACYKGHVDIAQ-YLLEQGADVNAKSYKGNTALHDC  190 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeeccCchHHHH-HHHHhCCCcchhcccCchHHHhh
Confidence            88899999999999999999999    88999999999999999999999999994 55569999999999999999999


Q ss_pred             hhcCCCcHHHHHHHHHH---------cCCCCCCcc
Q 045346          170 SYGYPKLKEEIQKLSKD---------FGRGQYSNG  195 (352)
Q Consensus       170 ~~~~~~~~~~i~~~l~~---------~g~~~~~~~  195 (352)
                      ++.|+.   ++++.|..         +|.+|+.-+
T Consensus       191 aEsG~v---divq~Ll~~ga~i~~d~~GmtPL~~A  222 (615)
T KOG0508|consen  191 AESGSV---DIVQLLLKHGAKIDVDGHGMTPLLLA  222 (615)
T ss_pred             hhcccH---HHHHHHHhCCceeeecCCCCchHHHH
Confidence            999877   88888887         456665443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=1.8e-22  Score=164.40  Aligned_cols=163  Identities=16%  Similarity=0.138  Sum_probs=142.7

Q ss_pred             hccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccC
Q 045346           10 EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDN   89 (352)
Q Consensus        10 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~   89 (352)
                      .++...|+.+--+++|+.+++...+.+.+..+.+.   ..|..| +.|.|||.||+..|++.+|++|++.|+++ ....+
T Consensus       117 tN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~D-e~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk  191 (296)
T KOG0502|consen  117 TNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACD-EFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGK  191 (296)
T ss_pred             cccccCCccccccCChhhHHHHHHHHHHHHHHhhc---cccCcc-ccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhh
Confidence            35667788888999999999998888887776543   237788 89999999999999999999999999999 88888


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346           90 KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      ...++|.+|+..|..++++.|++    .+.++|.-|.+|-|||-+|++.++.++++.|| ..|++++..+..|+++++.|
T Consensus       192 ~resALsLAt~ggytdiV~lLL~----r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll-~sGAd~t~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLT----REVDVNVYDWNGGTPLLYAVRGNHVKCVESLL-NSGADVTQEDDSGYWIMDLA  266 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHh----cCCCcceeccCCCceeeeeecCChHHHHHHHH-hcCCCcccccccCCcHHHHH
Confidence            99999999999999999999999    78899999999999999999999999985554 68999999999999999999


Q ss_pred             hhcCCCcHHHHHH
Q 045346          170 SYGYPKLKEEIQK  182 (352)
Q Consensus       170 ~~~~~~~~~~i~~  182 (352)
                      ...|+.....+++
T Consensus       267 ValGyr~Vqqvie  279 (296)
T KOG0502|consen  267 VALGYRIVQQVIE  279 (296)
T ss_pred             HHhhhHHHHHHHH
Confidence            9998875555554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=180.81  Aligned_cols=149  Identities=13%  Similarity=0.079  Sum_probs=128.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccC----CCCCcHHHHHHhcCcHHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK----DRKMTALHLAAGRGHARTVETIL   77 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~----~~g~tpLh~A~~~g~~~~v~~Ll   77 (352)
                      |+++.|+ .+|++++..  ++.||||.|+..|+.+++++|+++|++..+..+.    ..|.||+|.|+.+++.++++.|+
T Consensus       132 eiV~~LI-~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI  208 (437)
T PHA02795        132 DIVDFMV-DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI  208 (437)
T ss_pred             HHHHHHH-HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHH
Confidence            4566666 599999885  4589999999999999999999999755333320    24789999999999999999999


Q ss_pred             hhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCC--------hHHHHHHHh
Q 045346           78 SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP--------KEFHAVMIK  149 (352)
Q Consensus        78 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~--------~~~~~~lL~  149 (352)
                      ++|+++ +.+|..|+||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+        .+++ .+|.
T Consensus       209 s~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~----~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv-elLL  282 (437)
T PHA02795        209 PYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLE----NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL-EILL  282 (437)
T ss_pred             hCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH-HHHH
Confidence            999999 8899999999999999999999999999    889999999999999999999884        4666 5667


Q ss_pred             hcCccccccc
Q 045346          150 KTQANYDAVN  159 (352)
Q Consensus       150 ~~g~~~~~~n  159 (352)
                      ++|++++...
T Consensus       283 ~~gadI~~~~  292 (437)
T PHA02795        283 REPLSIDCIK  292 (437)
T ss_pred             hCCCCCCchh
Confidence            7899887654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.87  E-value=3.1e-21  Score=186.49  Aligned_cols=180  Identities=14%  Similarity=0.122  Sum_probs=138.3

Q ss_pred             HHHHHHhccccccccCCCCChHHHH--HHHcCCHHHHHHHhh--------------------------------cCCCcc
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHY--AAYYGNYGMVNLLLE--------------------------------IDQSAS   49 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~   49 (352)
                      +.++|.++|+++|.+|..|+||||+  |...|+.|++++|++                                ++.+. 
T Consensus       217 iv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-  295 (672)
T PHA02730        217 VIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-  295 (672)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-
Confidence            3455556999999999999999995  556678999999999                                55554 


Q ss_pred             cc--------------------ccCCCCCc---------------------HHHHHHhcC---cHHHHHHHHhhCCCccc
Q 045346           50 NI--------------------ANKDRKMT---------------------ALHLAAGRG---HARTVETILSLSPDCYE   85 (352)
Q Consensus        50 ~~--------------------~~~~~g~t---------------------pLh~A~~~g---~~~~v~~Ll~~~~~~~~   85 (352)
                      ..                    .+ ..|.+                     .||.-...+   +.+++++|+++|+++ +
T Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N  373 (672)
T PHA02730        296 EIVNLLIEGRHTLIDVMRSITSYD-SREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-D  373 (672)
T ss_pred             HHHHHHhhccCcchhhhhcccccc-ccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-C
Confidence            33                    34 55655                     666666655   689999999999998 5


Q ss_pred             cccCCCCchhHHHHhcCC----HHHHHHHHhcCchhhh--hhccCCCCCCcHHHH---HHhcC----Ch-----HHHHHH
Q 045346           86 LVDNKGWNFLHYAMVSFR----VEQLTNLLENNPLARS--LINEGDAMENTPLHV---LAAVR----PK-----EFHAVM  147 (352)
Q Consensus        86 ~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~--~~n~~d~~G~T~Lh~---A~~~~----~~-----~~~~~l  147 (352)
                      .. ..|+||||+|+..++    .+++++|++    .|+  ++|.+|.+|.||||.   |...+    ..     +++ .+
T Consensus       374 ~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv-k~  447 (672)
T PHA02730        374 KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF-DI  447 (672)
T ss_pred             cC-CCCCcHHHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHH-HH
Confidence            43 789999999888774    799999998    554  688999999999984   33222    11     224 56


Q ss_pred             HhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          148 IKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       148 L~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      |..+|++++.+|+.|+||||+|+..++.   +++++|.+.|+++....
T Consensus       448 LIs~GADINakD~~G~TPLh~Aa~~~~~---eive~LI~~GAdIN~~d  492 (672)
T PHA02730        448 LSKYMDDIDMIDNENKTLLYYAVDVNNI---QFARRLLEYGASVNTTS  492 (672)
T ss_pred             HHhcccchhccCCCCCCHHHHHHHhCCH---HHHHHHHHCCCCCCCCC
Confidence            6679999999999999999999988544   88899999888765544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.5e-22  Score=169.88  Aligned_cols=154  Identities=23%  Similarity=0.247  Sum_probs=128.3

Q ss_pred             HHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHH
Q 045346           30 AYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTN  109 (352)
Q Consensus        30 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  109 (352)
                      |+.|+.-.|++-++......|..| +.|.+||||||+.||..+++.|+.+|+.+ +..+.-..||||+|+.+|+.++++.
T Consensus         8 cregna~qvrlwld~tehdln~gd-dhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGD-DHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCccccccccc-ccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHH
Confidence            456666566666665444448888 89999999999999999999999999998 8888888999999999999999999


Q ss_pred             HHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCC
Q 045346          110 LLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       110 Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~  189 (352)
                      |++    .++++|+.+..|+|||||||..|.-++.+.|+ .+|+.++..|++|.||++.|...   ....+.+...+.|.
T Consensus        86 ll~----~kadvnavnehgntplhyacfwgydqiaedli-~~ga~v~icnk~g~tpldkakp~---l~~~l~e~aek~gq  157 (448)
T KOG0195|consen   86 LLS----RKADVNAVNEHGNTPLHYACFWGYDQIAEDLI-SCGAAVNICNKKGMTPLDKAKPM---LKNTLLEIAEKHGQ  157 (448)
T ss_pred             HHH----HhcccchhhccCCCchhhhhhhcHHHHHHHHH-hccceeeecccCCCCchhhhchH---HHHHHHHHHHHhCC
Confidence            999    78999999999999999999999766665554 59999999999999999988543   34456666666776


Q ss_pred             CCCC
Q 045346          190 GQYS  193 (352)
Q Consensus       190 ~~~~  193 (352)
                      .+..
T Consensus       158 ~~nr  161 (448)
T KOG0195|consen  158 SPNR  161 (448)
T ss_pred             CCCc
Confidence            6543

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=161.37  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=112.5

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhh------CCCccccccCCCCchhHHHHhcCC----HHHHHHHHhcCchhhh
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSL------SPDCYELVDNKGWNFLHYAMVSFR----VEQLTNLLENNPLARS  119 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~  119 (352)
                      +.++ ..|.||||+|++.|+.++++.|+..      ++++ +.+|..|+||||+|+..|+    .+++++|++    .|.
T Consensus        15 ~~~~-~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~ga   88 (169)
T PHA02741         15 AEKN-SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE----LGA   88 (169)
T ss_pred             hccc-cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHH----cCC
Confidence            3456 7899999999999999999998643      3555 7889999999999999998    477788887    788


Q ss_pred             hhccCCC-CCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          120 LINEGDA-MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       120 ~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      ++|.+|. +|+||||+|+..++.+.++.|+...|++++..|.+|+||+|+|...++.   ++++.|.+.++.
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~---~iv~~L~~~~~~  157 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV---AMMQILREIVAT  157 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH---HHHHHHHHHHHH
Confidence            9999985 9999999999999999996666557999999999999999999999755   777777775544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=8.1e-22  Score=161.06  Aligned_cols=136  Identities=17%  Similarity=0.137  Sum_probs=106.6

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHhhcCC------CccccccCCCCCcHHHHHHhcCcH---HHHHHHHhhCCCc
Q 045346           13 KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQ------SASNIANKDRKMTALHLAAGRGHA---RTVETILSLSPDC   83 (352)
Q Consensus        13 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~------~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~~~~~   83 (352)
                      ...+.+|.+|+||||+|++.|+.  ++++...+.      .....+| .+|.||||+|+..|+.   ++++.|++.|+++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            34677888999999999999983  333322211      1123456 7899999999999886   4688999999988


Q ss_pred             ccccc-CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccc
Q 045346           84 YELVD-NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYD  156 (352)
Q Consensus        84 ~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~  156 (352)
                       +.+| .+|+||||+|+..++.+++++|++.   .+.++|.+|..|+||||+|+..|+.+++. +|...|++.+
T Consensus        85 -n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~tpL~~A~~~~~~~i~~-~Ll~~ga~~~  153 (154)
T PHA02736         85 -NGKERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFKTPYYVACERHDAKMMN-ILRAKGAQCK  153 (154)
T ss_pred             -cccCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCC
Confidence             6676 5899999999999999999999862   36788999999999999999999888884 5556787764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=4.8e-21  Score=183.37  Aligned_cols=107  Identities=16%  Similarity=0.118  Sum_probs=88.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHH-cCCHHHHHHHhhcCCCc--------------------------------
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAY-YGNYGMVNLLLEIDQSA--------------------------------   48 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~-~g~~~~v~~Ll~~~~~~--------------------------------   48 (352)
                      |+++.|+. +|+++|.++..|+||+|+|+. .++.|++++|+++|++.                                
T Consensus        86 Elvk~LI~-~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  164 (631)
T PHA02792         86 ELLKLLIS-KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDY  164 (631)
T ss_pred             HHHHHHHH-cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcccccc
Confidence            56666666 799999999999999999965 68999999999998752                                


Q ss_pred             ---cccccCCCCCcHHHHHHhcC-------cHHHHHHHHhhCCCccccccCCCCchhHHHHhcC--CHHHHHHHH
Q 045346           49 ---SNIANKDRKMTALHLAAGRG-------HARTVETILSLSPDCYELVDNKGWNFLHYAMVSF--RVEQLTNLL  111 (352)
Q Consensus        49 ---~~~~~~~~g~tpLh~A~~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~v~~Ll  111 (352)
                         .+..| +.|.||||+|+.++       +.++++.|+++|+++ +..|.+|.||||+|+.+.  +.|+++.|+
T Consensus       165 ~~~i~~~~-~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~  237 (631)
T PHA02792        165 DYTTDYDD-RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALF  237 (631)
T ss_pred             ccccccCC-CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHH
Confidence               12344 67999999999998       899999999999998 778889999999998887  566666554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=5.9e-20  Score=186.17  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=127.6

Q ss_pred             HHHHHHHHh-ccccccccCCCCChHHH-HHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC---cHHHHHHH
Q 045346            2 AALRKLVEE-KKKMIKETDQYGWTPIH-YAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG---HARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~-~~~~~~~~d~~g~tpLh-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~L   76 (352)
                      +.+++++++ .+.++|..|..|+|||| .|+..++.++++.|++++.     .+ ..|.||||.|+.++   ..++++.+
T Consensus        31 ~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~-~~G~T~Lh~A~~~~~~~v~~ll~~l  104 (743)
T TIGR00870        31 ASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RG-AVGDTLLHAISLEYVDAVEAILLHL  104 (743)
T ss_pred             HHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CC-CcChHHHHHHHhccHHHHHHHHHHH
Confidence            467777764 27789999999999999 8888899999999999876     44 78999999998732   23344444


Q ss_pred             HhhCCCc---------cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC--------------CCCCcHHH
Q 045346           77 LSLSPDC---------YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD--------------AMENTPLH  133 (352)
Q Consensus        77 l~~~~~~---------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d--------------~~G~T~Lh  133 (352)
                      .+.+++.         ....+..|.||||+|+.+|+.++++.|++    .|+++|.++              ..|+||||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~----~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~  180 (743)
T TIGR00870       105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE----RGASVPARACGDFFVKSQGVDSFYHGESPLN  180 (743)
T ss_pred             hhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh----CCCCCCcCcCCchhhcCCCCCcccccccHHH
Confidence            4444321         01123569999999999999999999999    677777553              35899999


Q ss_pred             HHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcC
Q 045346          134 VLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGY  173 (352)
Q Consensus       134 ~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~  173 (352)
                      .|+..++.+.+ .+|.+.|+|++.+|+.|+||+|+|+..+
T Consensus       181 ~Aa~~~~~~iv-~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       181 AAACLGSPSIV-ALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHHHhCCHHHH-HHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            99999999888 5666789999999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=1.4e-21  Score=159.33  Aligned_cols=147  Identities=22%  Similarity=0.286  Sum_probs=92.8

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCC
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKG   91 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g   91 (352)
                      ...+|..|+.|.|||.||+..|++++|++|++.|+++ .... +...++|.+|++.|..++|++|+.+++++ +..|-+|
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lg-k~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNG  226 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALG-KYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNG  226 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhh-hhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCC
Confidence            3446666666666666666666666666666666666 4444 45566666666666666666666666666 6666666


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHH
Q 045346           92 WNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRH  167 (352)
Q Consensus        92 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~  167 (352)
                      -|||-+|++.++.++++.|++    .|++++..|..|++++.+|+..|+. .+.+.+ +.-++.+.+|+.-+||+|
T Consensus       227 gTpLlyAvrgnhvkcve~Ll~----sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvi-e~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  227 GTPLLYAVRGNHVKCVESLLN----SGADVTQEDDSGYWIMDLAVALGYR-IVQQVI-EKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CceeeeeecCChHHHHHHHHh----cCCCcccccccCCcHHHHHHHhhhH-HHHHHH-HHHHHHHhhcccCCCCCC
Confidence            666666666666666666666    5666666666666666666666653 443333 244555555655555553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=8.3e-21  Score=168.95  Aligned_cols=157  Identities=13%  Similarity=0.111  Sum_probs=129.1

Q ss_pred             ccccCCCCChH-HHHHHHcCCHHHHHHHhhcCCCcccccc---CCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccc-cC
Q 045346           15 IKETDQYGWTP-IHYAAYYGNYGMVNLLLEIDQSASNIAN---KDRKMTALHLAAGRGHARTVETILSLSPDCYELV-DN   89 (352)
Q Consensus        15 ~~~~d~~g~tp-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~---~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~   89 (352)
                      +..+|..|+|+ ||.|++.|+.+++++|+++|+++ +.++   +..|.||||+|+..|+.+++++|+++|+++ +.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCC
Confidence            56778888875 56666778999999999999998 6653   158999999999999999999999999999 654 56


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346           90 KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      .|.||||+|+..++.++++.|++    .|+++|.+|.+|.||||+|++.++.+.. .++.  |..   .+..+.+|.+++
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~----~GAdin~kd~~G~TpL~~A~~~~~~~~~-~~~~--~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLS----YGADINIQTNDMVTPIELALMICNNFLA-FMIC--DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHhCChhHH-HHhc--CCc---ccccccChhhhh
Confidence            89999999999999999999999    7899999999999999999998876665 3443  322   466778888875


Q ss_pred             hhcCCCcHHHHHHHHHHcCC
Q 045346          170 SYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~g~  189 (352)
                      .      ..++.+.|.+++.
T Consensus       173 ~------n~ei~~~Lish~v  186 (300)
T PHA02884        173 I------NFDILKILVSHFI  186 (300)
T ss_pred             c------cHHHHHHHHHHHH
Confidence            2      2367777776554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=5.1e-22  Score=199.06  Aligned_cols=184  Identities=25%  Similarity=0.277  Sum_probs=156.8

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC-cHHHHHHHHhhCCC
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG-HARTVETILSLSPD   82 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~   82 (352)
                      +.+|+...+.+++.++.+|.||||.|+..++.++++.+++++++. +..+ ..|+||+|+|+..| +.++...+++.+.+
T Consensus       389 ~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~-~lG~T~lhvaa~~g~~~~~~~~l~~~g~~  466 (1143)
T KOG4177|consen  389 VVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKA-KLGYTPLHVAAKKGRYLQIARLLLQYGAD  466 (1143)
T ss_pred             HHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHh-hcCCChhhhhhhcccHhhhhhhHhhcCCC
Confidence            345566688888999999999999999999999999999988888 8888 78899999999988 88888888888888


Q ss_pred             ccccccCCCCchhHHHHhcCCHHHHHHHHhcCc-----------------------------hhhhhhccCCCCCCcHHH
Q 045346           83 CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNP-----------------------------LARSLINEGDAMENTPLH  133 (352)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~-----------------------------~~~~~~n~~d~~G~T~Lh  133 (352)
                      + +.....|.||||+|+..|+.+++..+++...                             ..|..++.++.+|.||||
T Consensus       467 ~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh  545 (1143)
T KOG4177|consen  467 P-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLH  545 (1143)
T ss_pred             c-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHH
Confidence            8 8888899999999999999888888876431                             135678888999999999


Q ss_pred             HHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          134 VLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       134 ~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      .||.+|+...++ .|.++|+|++.+++.|+||||.|+..|+.   ++..+|.++|+.+...
T Consensus       546 ~A~~~g~v~~Vk-fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~---~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  546 VAVHYGNVDLVK-FLLEHGADVNAKDKLGYTPLHQAAQQGHN---DIAELLLKHGASVNAA  602 (1143)
T ss_pred             HHHhcCCchHHH-HhhhCCccccccCCCCCChhhHHHHcChH---HHHHHHHHcCCCCCcc
Confidence            999999999995 55569999999999999999999999744   8999999988776543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=8.8e-21  Score=156.58  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=115.9

Q ss_pred             ccccCCCCCcHHHHHHhcCcH----HHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHH---HHHHHhcCchhhhhhc
Q 045346           50 NIANKDRKMTALHLAAGRGHA----RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQ---LTNLLENNPLARSLIN  122 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~---v~~Ll~~~~~~~~~~n  122 (352)
                      +..+ .++.+++|.||+.|+.    +++++|++.++.+ +.+|.+|+||||+|+.+|+.+.   +++|++    .|.++|
T Consensus        14 ~~~~-~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin   87 (166)
T PHA02743         14 VEID-EDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVN----MGADIN   87 (166)
T ss_pred             hhhc-cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHH----cCCCCC
Confidence            4455 6788999999999998    5666777888776 7889999999999999988664   788888    788999


Q ss_pred             cCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          123 EGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       123 ~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      .+| ..|+||||+|+..++.++++.++.+.|++++.+|.+|+||+|+|+..++.   +++++|.+.|+.....
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~---~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDR---RMMEILRANGAVCDDP  157 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCCCc
Confidence            998 58999999999999999986665468999999999999999999998655   8999999988765443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=3.1e-21  Score=176.17  Aligned_cols=163  Identities=25%  Similarity=0.237  Sum_probs=145.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +-++.+|. .++.++..+.+|.|+||-+|...+.++|++|+++++++ +.+| ..|+||||.|+..||..++++|++.|+
T Consensus        54 ~ev~~ll~-~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d-~e~wtPlhaaascg~~~i~~~li~~gA  130 (527)
T KOG0505|consen   54 EEVRKLLN-RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQD-NEGWTPLHAAASCGYLNIVEYLIQHGA  130 (527)
T ss_pred             HHHHHHhc-cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccc-cccCCcchhhcccccHHHHHHHHHhhh
Confidence            34566665 66778999999999999999999999999999999999 9999 899999999999999999999999887


Q ss_pred             Cccc----------------------------------------------------------cccCCCCchhHHHHhcCC
Q 045346           82 DCYE----------------------------------------------------------LVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        82 ~~~~----------------------------------------------------------~~d~~g~t~Lh~A~~~~~  103 (352)
                      +...                                                          ..+..|.|.||+|+.+|.
T Consensus       131 ~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy  210 (527)
T KOG0505|consen  131 NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY  210 (527)
T ss_pred             hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH
Confidence            7521                                                          133458999999999999


Q ss_pred             HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhc
Q 045346          104 VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYG  172 (352)
Q Consensus       104 ~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~  172 (352)
                      .++.++|++    .+..++.+|.+|+||||.|+..|..+.++ +|..+|++.+..+..|+||+++|...
T Consensus       211 ~e~~~lLl~----ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e-lL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  211 TEVAALLLQ----AGYSVNIKDYDGWTPLHAAAHWGQEDACE-LLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHHHHHH----hccCcccccccCCCcccHHHHhhhHhHHH-HHHHhhcccchhhhcCCCCccchhhh
Confidence            999999999    88999999999999999999999888874 88889999999999999999999653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=153.85  Aligned_cols=132  Identities=14%  Similarity=0.121  Sum_probs=107.1

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhhC------CCccccccCCCCchhHHHHhcCCHH---HHHHHHhcCchhhhh
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSLS------PDCYELVDNKGWNFLHYAMVSFRVE---QLTNLLENNPLARSL  120 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~t~Lh~A~~~~~~~---~v~~Ll~~~~~~~~~  120 (352)
                      +.+| .+|.||||+|++.|+.  ++.+...+      +.....+|.+|+||||+|+..|+.+   +++.|++    .|.+
T Consensus        11 ~~~d-~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gad   83 (154)
T PHA02736         11 SEPD-IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME----WGAD   83 (154)
T ss_pred             HhcC-CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH----cCCC
Confidence            4556 7899999999999984  33332221      1122456899999999999999864   5778888    7889


Q ss_pred             hccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          121 INEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       121 ~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                      +|.+| .+|+||||+|+..++.+.+..|+.+.|++++.+|..|+||+|+|+..++.   +++++|.+.|+.+
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~---~i~~~Ll~~ga~~  152 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA---KMMNILRAKGAQC  152 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence            99998 59999999999999999997666557999999999999999999998655   8888888887654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=6.4e-20  Score=175.66  Aligned_cols=61  Identities=15%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             cccCCCCChHHHHHHHcC-------CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHh
Q 045346           16 KETDQYGWTPIHYAAYYG-------NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETILS   78 (352)
Q Consensus        16 ~~~d~~g~tpLh~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~   78 (352)
                      |..|+.|+||||+|+..+       +.|+++.|+++|+++ +..| ..|.||||+|+.+.  ..|+++.|++
T Consensus       169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d-~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYT-YREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccC-CCCChHHHHHHHcccchHHHHHHHHh
Confidence            345556777777777666       567777777777666 5566 56777777776555  4445555544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.84  E-value=7e-20  Score=177.16  Aligned_cols=177  Identities=16%  Similarity=0.081  Sum_probs=104.2

Q ss_pred             ccc-ccCCCCChHHHHHHHcC---CHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHhhCCCc-ccc
Q 045346           14 MIK-ETDQYGWTPIHYAAYYG---NYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG--HARTVETILSLSPDC-YEL   86 (352)
Q Consensus        14 ~~~-~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~-~~~   86 (352)
                      ++| .+|..|+||||+|+..|   +.+++++|+++|+++ +.+| ..|.||||+|+..+  +.+++++|++.|++. .+.
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD-~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRN-NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccC-CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            344 67777888888888776   478888888887777 6777 67888888777755  677888887775422 022


Q ss_pred             ccCCCCchhHHHHh--cCCHHHHHHHHhcCc-h----------------------------------hhhhhc-------
Q 045346           87 VDNKGWNFLHYAMV--SFRVEQLTNLLENNP-L----------------------------------ARSLIN-------  122 (352)
Q Consensus        87 ~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~-~----------------------------------~~~~~n-------  122 (352)
                      .+..+.+|||.++.  +++.+++++|++... .                                  .|+.++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            34444555555444  444455555542000 0                                  344443       


Q ss_pred             cCCCCCC-cHHHHHH------hcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          123 EGDAMEN-TPLHVLA------AVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       123 ~~d~~G~-T~Lh~A~------~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      ..|..+. |.||+..      ..++.+++ ++|.++|+++|.+|++|+||||++....+. ..++++.|.+...+....
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv-~lLIs~GadIN~kd~~G~TpLh~~~~~~~~-~~eiv~~Li~~~~~~~~~  266 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVI-KCLIDNNVSIHGRDEGGSLPIQYYWSCSTI-DIEIVKLLIKDVDTCSVY  266 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCcc-cHHHHHHHHhcccccccc
Confidence            1233333 4444332      23355555 455567788888888888888875544322 257777777744444333

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=2.4e-20  Score=146.60  Aligned_cols=132  Identities=21%  Similarity=0.267  Sum_probs=117.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.|++||..++..+|.+|.+|+||||-|+.+|+.++++.|+..+++. +.+. ..|+||||-||.-.+.+++..|+++|+
T Consensus        77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T-~~GWTPLhSAckWnN~~va~~LLqhga  154 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKT-NEGWTPLHSACKWNNFEVAGRLLQHGA  154 (228)
T ss_pred             HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-cccc-ccCccchhhhhcccchhHHHHHHhccC
Confidence            46899999999999999999999999999999999999999999999 7888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCC-HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFR-VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR  139 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (352)
                      ++ +......+||||+||...+ ...+++|+..   ....+..++..+.||+.+|-+.+
T Consensus       155 DV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~d---ryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  155 DV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHD---RYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cc-cccccccchhhHHhhcccchHHHHHHHhhc---cccChhhhcCccchHHHHHHHhh
Confidence            99 8888888999999998765 4456666653   34456677888999999998875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=4.3e-19  Score=179.89  Aligned_cols=171  Identities=19%  Similarity=0.095  Sum_probs=126.6

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcC---CHHHHHHHhhcCCCc-----cc----cccCCCCCcHHHHHHhcCcHH
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYG---NYGMVNLLLEIDQSA-----SN----IANKDRKMTALHLAAGRGHAR   71 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~-----~~----~~~~~~g~tpLh~A~~~g~~~   71 (352)
                      +.++|...+.    .+..|.||||.|+..+   ..++++.+.+.+.+.     .+    ... ..|.||||+|+.+|+.+
T Consensus        68 iv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~-~~G~TpLhlAa~~~~~e  142 (743)
T TIGR00870        68 LTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF-TPGITALHLAAHRQNYE  142 (743)
T ss_pred             HHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccccc-CCCCcHHHHHHHhCCHH
Confidence            4455555665    6789999999999732   233344444433221     01    112 46999999999999999


Q ss_pred             HHHHHHhhCCCcccccc--------------CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHh
Q 045346           72 TVETILSLSPDCYELVD--------------NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA  137 (352)
Q Consensus        72 ~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (352)
                      +++.|+++|+++ +.++              ..|+||||.|+..|+.++++.|++    .++++|.+|..|+||||+|+.
T Consensus       143 iVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~----~gadin~~d~~g~T~Lh~A~~  217 (743)
T TIGR00870       143 IVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE----DPADILTADSLGNTLLHLLVM  217 (743)
T ss_pred             HHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc----CCcchhhHhhhhhHHHHHHHh
Confidence            999999999988 3332              358999999999999999999999    778999999999999999999


Q ss_pred             cC-----ChHH---HHHHHhhcCcc---c----cccccCCcchHHHHhhcCCCcHHHHHHHHHHc
Q 045346          138 VR-----PKEF---HAVMIKKTQAN---Y----DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDF  187 (352)
Q Consensus       138 ~~-----~~~~---~~~lL~~~g~~---~----~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~  187 (352)
                      .+     +.+.   +..++.+.+++   .    +..|++|.||+|+|+..++.   ++.+.+.+.
T Consensus       218 ~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~---~l~~lLL~~  279 (743)
T TIGR00870       218 ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRI---VLFRLKLAI  279 (743)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCc---cHHHHHHHH
Confidence            86     1111   11334444443   3    67899999999999999776   677766663

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.1e-19  Score=153.98  Aligned_cols=142  Identities=26%  Similarity=0.349  Sum_probs=121.7

Q ss_pred             HhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccccc
Q 045346            9 EEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD   88 (352)
Q Consensus         9 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d   88 (352)
                      .+...+.|.-|..|.+|||+||+.|+..+++.|+..|+.+ |..+ ....||||+|+.+||.++|..|++..+++ +.++
T Consensus        21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tn-mgddtplhlaaahghrdivqkll~~kadv-navn   97 (448)
T KOG0195|consen   21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTN-MGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVN   97 (448)
T ss_pred             cCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-cccc-CCCCcchhhhhhcccHHHHHHHHHHhccc-chhh
Confidence            3445678899999999999999999999999999999998 7777 56689999999999999999999999999 8999


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccccc
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAV  158 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~  158 (352)
                      ..|.||||+||..|...+.+-|+.    .|+.++..+++|.|||.-|--.- .+....+-.+.|-++|..
T Consensus        98 ehgntplhyacfwgydqiaedli~----~ga~v~icnk~g~tpldkakp~l-~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLIS----CGAAVNICNKKGMTPLDKAKPML-KNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHh----ccceeeecccCCCCchhhhchHH-HHHHHHHHHHhCCCCCcc
Confidence            999999999999999999999999    78999999999999998764322 123334555667666643

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-17  Score=160.13  Aligned_cols=167  Identities=23%  Similarity=0.148  Sum_probs=135.4

Q ss_pred             ccccccCCCCChHHHHHHH---cCCHHHHHHHhhcCCCccc---cccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccc
Q 045346           13 KMIKETDQYGWTPIHYAAY---YGNYGMVNLLLEIDQSASN---IANKDRKMTALHLAAGRGHARTVETILSLSPDCYEL   86 (352)
Q Consensus        13 ~~~~~~d~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~---~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~   86 (352)
                      ..++.+...|.|.||.|..   .++.++++.|++.-+..+|   ..+...|.||||+|+.+.+.++|+.|++.|+|+...
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            3466777789999999996   4457999999996544332   333367999999999999999999999999997311


Q ss_pred             --------cc--------------CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHH
Q 045346           87 --------VD--------------NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFH  144 (352)
Q Consensus        87 --------~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  144 (352)
                              .|              .-|+.||.+|+.-++.|++++|++    +++|+|++|.+|||.||..+..-..+..
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~----~gAd~~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA----HGADPNAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh----cCCCCCccccCCChHHHHHHHHHHHHHH
Confidence                    11              137889999999999999999999    8999999999999999999988655666


Q ss_pred             HHHHhhcCcc--ccccccCCcchHHHHhhcCCCcHHHHHHHHHHc
Q 045346          145 AVMIKKTQAN--YDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDF  187 (352)
Q Consensus       145 ~~lL~~~g~~--~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~  187 (352)
                       .++.++|++  ...+|++|.|||.+|+.-|+.   ++.+.+.+.
T Consensus       290 -~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~---emf~~ile~  330 (782)
T KOG3676|consen  290 -DLALELGANALEHVRNNQGLTPLTLAAKLGKK---EMFQHILER  330 (782)
T ss_pred             -HHHHhcCCCccccccccCCCChHHHHHHhhhH---HHHHHHHHh
Confidence             445568888  889999999999999999655   666555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=153.97  Aligned_cols=118  Identities=16%  Similarity=0.048  Sum_probs=102.3

Q ss_pred             cccCCCCCc-HHHHHHhcCcHHHHHHHHhhCCCccccc----cCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC
Q 045346           51 IANKDRKMT-ALHLAAGRGHARTVETILSLSPDCYELV----DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD  125 (352)
Q Consensus        51 ~~~~~~g~t-pLh~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d  125 (352)
                      .+| +.|.| +||.|++.|+.++++.|+++|+++ +.+    +..|.||||+|+..++.+++++|++    .|+++|.++
T Consensus        27 ~~d-~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~  100 (300)
T PHA02884         27 KKN-KICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYA  100 (300)
T ss_pred             ccC-cCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcCccc
Confidence            345 45555 567777889999999999999998 555    4689999999999999999999999    889999864


Q ss_pred             -CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCC
Q 045346          126 -AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK  175 (352)
Q Consensus       126 -~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~  175 (352)
                       ..|+||||+|+..++.+.+ .+|.+.|++++.+|.+|.||+|+|+..++.
T Consensus       101 ~~~g~TpLh~Aa~~~~~eiv-klLL~~GAdin~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCL-EILLSYGADINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHhCCh
Confidence             6899999999999999998 555679999999999999999999987655

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=5.7e-19  Score=166.93  Aligned_cols=177  Identities=24%  Similarity=0.216  Sum_probs=127.8

Q ss_pred             HHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccc
Q 045346            6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYE   85 (352)
Q Consensus         6 ~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~   85 (352)
                      .||.+..+.++..|..|.+|||+|+..|+.+++|.++.++... |... ..|.||||.|+.+||.+++.+|+++++++ .
T Consensus        66 ~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~-~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~  142 (854)
T KOG0507|consen   66 KLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVN-IENETPLHLAAQHGHLEVVFYLLKKNADP-F  142 (854)
T ss_pred             HHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC-Cccc-ccCcCccchhhhhcchHHHHHHHhcCCCc-c
Confidence            4445566677777778888888888888888888888777444 6666 67888888888888888888888888887 6


Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHhcCchh----hhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           86 LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA----RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        86 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~----~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      .+|+.+.|+|.+|++.|+.++++.|+...-..    ...-..++-.+-+|||+|+++|+.++. +.|+..|.++|...++
T Consensus       143 i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~-~~ll~ag~din~~t~~  221 (854)
T KOG0507|consen  143 IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECM-QALLEAGFDINYTTED  221 (854)
T ss_pred             ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHH-HHHHhcCCCccccccc
Confidence            67888888888888888888888777641100    001233455677888888888887777 4555688888877666


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      | |+||.|+.+|..   +++..+.+.|..
T Consensus       222 g-talheaalcgk~---evvr~ll~~gin  246 (854)
T KOG0507|consen  222 G-TALHEAALCGKA---EVVRFLLEIGIN  246 (854)
T ss_pred             c-hhhhhHhhcCcc---hhhhHHHhhccc
Confidence            6 788888888655   677777775543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.77  E-value=2.4e-18  Score=150.17  Aligned_cols=141  Identities=21%  Similarity=0.270  Sum_probs=125.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHc-----CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYY-----GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   76 (352)
                      ++|+.||...-.+++.+|+.|+||+++|+..     .+.++|..|.+-|. + |.+-...|+|+|++|+.+|+.++|+.|
T Consensus       282 ~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-V-NaKAsQ~gQTALMLAVSHGr~d~vk~L  359 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-V-NAKASQHGQTALMLAVSHGRVDMVKAL  359 (452)
T ss_pred             HHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-c-chhhhhhcchhhhhhhhcCcHHHHHHH
Confidence            5789999999999999999999999998853     35788999998653 3 555547899999999999999999999


Q ss_pred             HhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346           77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      |.+++|+ |.+|.+|.|+|.+||++||.|+++.||..   ..+++...|.+|.|+|.+|-..|+.++...+.
T Consensus       360 LacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~---p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  360 LACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV---PSCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             HHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc---CcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            9999999 99999999999999999999999999986   45788899999999999999999988875443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=2.5e-18  Score=162.65  Aligned_cols=168  Identities=18%  Similarity=0.145  Sum_probs=146.5

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCC
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKG   91 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g   91 (352)
                      +...|.+|.+|.|.||.|+.+|+.+++++|+++.+-. +..| ..|.+|||+|+++|+.++++.++.++..+ +..+..|
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~  115 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIEN  115 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhh-ccCcceEEehhhcCcchHHHHHHhcccCC-CcccccC
Confidence            3567889999999999999999999999999988877 8888 89999999999999999999999999555 8899999


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc--------ccccccCCc
Q 045346           92 WNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN--------YDAVNKRNV  163 (352)
Q Consensus        92 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~--------~~~~n~~g~  163 (352)
                      .||||.|+.+|+.+++.+|++    .+++.-.+|+++.|+|.+|++.|..+++..++.. ..+        -..++-.+-
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~----~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~  190 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLK----KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAI  190 (854)
T ss_pred             cCccchhhhhcchHHHHHHHh----cCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCc
Confidence            999999999999999999999    7888999999999999999999998888555443 211        223455678


Q ss_pred             chHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          164 SVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      +|+|+|+++++.   ++++.|+++|.+
T Consensus       191 ~plHlaakngh~---~~~~~ll~ag~d  214 (854)
T KOG0507|consen  191 YPLHLAAKNGHV---ECMQALLEAGFD  214 (854)
T ss_pred             CCcchhhhcchH---HHHHHHHhcCCC
Confidence            999999999777   888999887754

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.2e-17  Score=128.95  Aligned_cols=123  Identities=33%  Similarity=0.397  Sum_probs=104.3

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .+|.+|+||||+|+..|+.++++.|++++... +.++ ..|.||||.|+..++.++++.|++.+++. +..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~-~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            45678999999999999999999999988776 6677 78899999999999999999999988766 667788899999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHH
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAV  146 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  146 (352)
                      +|+..++.+++++|++    .+...+..|..|.||+|+|...++.+.+..
T Consensus        79 ~a~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  124 (126)
T cd00204          79 LAARNGNLDVVKLLLK----HGADVNARDKDGRTPLHLAAKNGHLEVVKL  124 (126)
T ss_pred             HHHHcCcHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcCCHHHHHH
Confidence            9999999999999988    456677888889999999998887776643

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=3.4e-17  Score=120.75  Aligned_cols=88  Identities=34%  Similarity=0.388  Sum_probs=49.2

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHH
Q 045346           26 IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVE  105 (352)
Q Consensus        26 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  105 (352)
                      ||+|++.|+.++++.|++.+.+. +     .|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~-----~~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-N-----LGNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-T-----SSSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-C-----CCCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            45666666666666666655443 1     1455666666666666666666666555 555556666666666666666


Q ss_pred             HHHHHHhcCchhhhhhccC
Q 045346          106 QLTNLLENNPLARSLINEG  124 (352)
Q Consensus       106 ~v~~Ll~~~~~~~~~~n~~  124 (352)
                      ++++|++    .|.++|.+
T Consensus        74 ~~~~Ll~----~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLE----HGADVNIR   88 (89)
T ss_dssp             HHHHHHH----TTT-TTSS
T ss_pred             HHHHHHH----cCCCCCCc
Confidence            6666655    44445444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=3.3e-17  Score=120.78  Aligned_cols=89  Identities=31%  Similarity=0.353  Sum_probs=78.6

Q ss_pred             HHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCC
Q 045346           61 LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP  140 (352)
Q Consensus        61 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (352)
                      ||+|++.|+.++++.|++.++++ +.    |+||||+|+.+|+.+++++|++    .+.+++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999988877 32    8999999999999999999999    788999999999999999999999


Q ss_pred             hHHHHHHHhhcCccccccc
Q 045346          141 KEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus       141 ~~~~~~lL~~~g~~~~~~n  159 (352)
                      .++++ +|.++|++++.+|
T Consensus        72 ~~~~~-~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 LEIVK-LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHH-HHHHTTT-TTSS-
T ss_pred             HHHHH-HHHHcCCCCCCcC
Confidence            99884 5556899999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.69  E-value=1.4e-16  Score=146.00  Aligned_cols=156  Identities=22%  Similarity=0.210  Sum_probs=134.0

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHH
Q 045346           26 IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVE  105 (352)
Q Consensus        26 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  105 (352)
                      +.-|+..|..+-++.|+..+.++ +..+ .+|.|+||-+|.-.+.+||++|+++++++ +..|..||||||.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~-~~~n-~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP-NLCN-VDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc-cccC-CccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            45678889999999999999888 8888 89999999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHhcCch-------------------------------------------------------hhhhhccCCCCCCc
Q 045346          106 QLTNLLENNPL-------------------------------------------------------ARSLINEGDAMENT  130 (352)
Q Consensus       106 ~v~~Ll~~~~~-------------------------------------------------------~~~~~n~~d~~G~T  130 (352)
                      ++++++.....                                                       .|...+..+..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            99999853321                                                       12334555666999


Q ss_pred             HHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          131 PLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      .||.|+.+|..+.. .+|..+|.+++.+|.+|+||||.|+.-+..   +..++|.++|
T Consensus       201 ~lHvAaa~Gy~e~~-~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~---~~~elL~~~g  254 (527)
T KOG0505|consen  201 ALHVAAANGYTEVA-ALLLQAGYSVNIKDYDGWTPLHAAAHWGQE---DACELLVEHG  254 (527)
T ss_pred             HHHHHHhhhHHHHH-HHHHHhccCcccccccCCCcccHHHHhhhH---hHHHHHHHhh
Confidence            99999999998877 677779999999999999999999999766   5555666544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=6e-16  Score=120.78  Aligned_cols=123  Identities=30%  Similarity=0.326  Sum_probs=107.9

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcH
Q 045346           52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP  131 (352)
Q Consensus        52 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~  131 (352)
                      ++ .+|.||||.|+..|+.++++.|++.+++. ...+..|.+|+|.|+..++.++++.|++    .+..++..|..|.||
T Consensus         3 ~~-~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~   76 (126)
T cd00204           3 RD-EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE----KGADVNARDKDGNTP   76 (126)
T ss_pred             cC-cCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCH
Confidence            44 68999999999999999999999999987 7789999999999999999999999999    555788889999999


Q ss_pred             HHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHH
Q 045346          132 LHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLS  184 (352)
Q Consensus       132 Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l  184 (352)
                      +|+|++.++.+.+ ++|.+.+.+.+..|..|+||++.|...++.   +++++|
T Consensus        77 l~~a~~~~~~~~~-~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~L  125 (126)
T cd00204          77 LHLAARNGNLDVV-KLLLKHGADVNARDKDGRTPLHLAAKNGHL---EVVKLL  125 (126)
T ss_pred             HHHHHHcCcHHHH-HHHHHcCCCCcccCCCCCCHHHHHHhcCCH---HHHHHh
Confidence            9999999998888 555568889999999999999999988543   555543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=2.5e-15  Score=129.79  Aligned_cols=128  Identities=28%  Similarity=0.317  Sum_probs=94.1

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCc-----HHHHHHHHhhCC--Cccccc
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH-----ARTVETILSLSP--DCYELV   87 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~   87 (352)
                      ....+..+.+++|.++..+..+.++++++.+.++ +.++ ..|.||||+|+..|+     .++++.|++.++  +.....
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-cccc-CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            3444555777777777777777777777777777 7777 677777777777777     777777777777  455666


Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346           88 DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus        88 d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      |.+|+||||+|+..|+.++++.+++    .+.+++.+|..|.|++|.|+..++.+....++
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLE----AGADPNSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHh----cCCCCcccccCCCcchhhhcccchHHHHHHHH
Confidence            7777777777777777777777777    56667777777777777777777766664333

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=8.2e-15  Score=140.62  Aligned_cols=169  Identities=23%  Similarity=0.297  Sum_probs=136.8

Q ss_pred             HHHHHHHHhcccccccc----CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccc--------cC--------------C
Q 045346            2 AALRKLVEEKKKMIKET----DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIA--------NK--------------D   55 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~--------~~--------------~   55 (352)
                      |+++.||+..|..+|..    +..|.||||+|+.+.+.++|++|++.|+|+ +.+        ++              .
T Consensus       160 ~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y  238 (782)
T KOG3676|consen  160 ELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFY  238 (782)
T ss_pred             HHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceee
Confidence            67888998888777753    336999999999999999999999999987 211        10              2


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHH
Q 045346           56 RKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL  135 (352)
Q Consensus        56 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (352)
                      .|..||-+||..++.|++++|+++++|+ +.+|.+|+|.||..+.+-..++..++++....  .+...+|++|-|||-+|
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHH
Confidence            4789999999999999999999999999 99999999999999999999999999994432  33888999999999999


Q ss_pred             HhcCChHHHHHHHhhcC-------------cccccccc--CCcchHHHHhhcCC
Q 045346          136 AAVRPKEFHAVMIKKTQ-------------ANYDAVNK--RNVSVRHIFSYGYP  174 (352)
Q Consensus       136 ~~~~~~~~~~~lL~~~g-------------~~~~~~n~--~g~Tpl~~a~~~~~  174 (352)
                      |+.|..++...+|...+             -+.+..|.  +..++|.+.+....
T Consensus       316 aklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~  369 (782)
T KOG3676|consen  316 AKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIK  369 (782)
T ss_pred             HHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCc
Confidence            99999999988877511             12233332  45577887776643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=8.3e-14  Score=120.25  Aligned_cols=129  Identities=26%  Similarity=0.235  Sum_probs=114.7

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC-----HHHHHHHHhcCchhhh---hh
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR-----VEQLTNLLENNPLARS---LI  121 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~---~~  121 (352)
                      ...+ ..+.+++|.++..+..++++.++..+.++ +.+|..|.||||+|+.+++     .++++.|++    .+.   ..
T Consensus        67 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~  140 (235)
T COG0666          67 AARD-LDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVN  140 (235)
T ss_pred             ccCC-ccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCc
Confidence            3444 67899999999999999999999999999 9999999999999999999     999999999    566   67


Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       122 n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      +.+|.+|+||||+|+..|+.+.+ .++.+.|++++.+|..|.|+++.|+..+..   ++.+.+.+.+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~-~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~l~~~~  203 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIV-ELLLEAGADPNSRNSYGVTALDPAAKNGRI---ELVKLLLDKG  203 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHH-HHHHhcCCCCcccccCCCcchhhhcccchH---HHHHHHHhcC
Confidence            77799999999999999998777 566678999999999999999999999655   7777777755

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.54  E-value=9.4e-15  Score=143.04  Aligned_cols=177  Identities=22%  Similarity=0.231  Sum_probs=124.8

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      ..++|..+|+++..+|+.|.+||.+|+-.||..+|+.|+++.+++.-..| +.+.|+|-+||..|+.++|+.||..+++-
T Consensus       772 ~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsd-rtkdt~lSlacsggr~~vvelLl~~gank  850 (2131)
T KOG4369|consen  772 EVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSD-RTKDTMLSLACSGGRTRVVELLLNAGANK  850 (2131)
T ss_pred             HHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcc-cccCceEEEecCCCcchHHHHHHHhhccc
Confidence            34555568999999999999999999999999999999998888855556 78899999999999999999999888876


Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC--CCCCcHHHHHHhcCCh--------------------
Q 045346           84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD--AMENTPLHVLAAVRPK--------------------  141 (352)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d--~~G~T~Lh~A~~~~~~--------------------  141 (352)
                       +.++....|||.+|...|..++++.|+.    .|..+|.+.  +.|-.||++|.++|+.                    
T Consensus       851 -ehrnvsDytPlsla~Sggy~~iI~~llS----~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTN  925 (2131)
T KOG4369|consen  851 -EHRNVSDYTPLSLARSGGYTKIIHALLS----SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETN  925 (2131)
T ss_pred             -cccchhhcCchhhhcCcchHHHHHHHhh----cccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccc
Confidence             6666667777777777777777777766    444444442  3355555555555544                    


Q ss_pred             --------------HHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          142 --------------EFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       142 --------------~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                                    +.+ .+|+.+.+++..+-+.|.|||+-++..|..   ++-+.|.++|++
T Consensus       926 rnTaltla~fqgr~evv-~lLLa~~anvehRaktgltplme~AsgGyv---dvg~~li~~gad  984 (2131)
T KOG4369|consen  926 RNTALTLALFQGRPEVV-FLLLAAQANVEHRAKTGLTPLMEMASGGYV---DVGNLLIAAGAD  984 (2131)
T ss_pred             cccceeeccccCcchHH-HHHHHHhhhhhhhcccCCcccchhhcCCcc---ccchhhhhcccc
Confidence                          444 344445555555666666666666666554   444555555544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=1.2e-13  Score=97.61  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=71.5

Q ss_pred             HHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC
Q 045346           60 ALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR  139 (352)
Q Consensus        60 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (352)
                      -+.|+.++|..+-|+..+..+-++++.  ..|++|||+|+-+|+.+++++|+.    .|++++.+|+.|-|||.-|+..|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHHHh
Confidence            345677777777777777776555322  267777777777777777777777    66777777777777777777777


Q ss_pred             ChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346          140 PKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus       140 ~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      +.+++ ++|++.|++....--+|.+.++-+
T Consensus        79 H~~cV-klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCV-KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHH-HHHHHcCcccceeCCCchhHHhhc
Confidence            77777 455557777777777777666544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.50  E-value=5.9e-14  Score=137.58  Aligned_cols=183  Identities=17%  Similarity=0.133  Sum_probs=139.9

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      +.++|...+++-..++-..+|||.+|...|+.++++.|+.+|..+......+.|..||++|..+||...++.|++.+.++
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            44566668887788888888899888888888999999888887733333367888999999999999999999988888


Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHH------------------
Q 045346           84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHA------------------  145 (352)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~------------------  145 (352)
                      +.....+.+|+|-+|+..|+.|++..||.    ..+++..+-+.|-|||+-++..|..++-.                  
T Consensus       919 NaqIeTNrnTaltla~fqgr~evv~lLLa----~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~  994 (2131)
T KOG4369|consen  919 NAQIETNRNTALTLALFQGRPEVVFLLLA----AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTW  994 (2131)
T ss_pred             ccccccccccceeeccccCcchHHHHHHH----HhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcC
Confidence            66667788899999999999999998888    66777778888888888888777644431                  


Q ss_pred             ----------------HHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          146 ----------------VMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       146 ----------------~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                                      .+|+...+.++++|++|.|+|.+|+..+..   .....+.+.++++..
T Consensus       995 dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~l---ss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen  995 DTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGAL---SSCPILVSSVADADQ 1055 (2131)
T ss_pred             CccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCcc---ccchHHhhcccChhh
Confidence                            223334455667788888888888887776   555666666665544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.1e-13  Score=91.57  Aligned_cols=54  Identities=41%  Similarity=0.588  Sum_probs=33.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL   77 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   77 (352)
                      |+||||+|++.|+.+++++|++++.++ +.+| .+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d-~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQD-EDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777776665 5566 66777777777777777777664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=2e-13  Score=135.92  Aligned_cols=105  Identities=22%  Similarity=0.102  Sum_probs=91.3

Q ss_pred             HHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcC
Q 045346           60 ALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVR  139 (352)
Q Consensus        60 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (352)
                      +|+.|+..|+.+.++.|++.++++ +.+|.+|+||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCC
Confidence            588899999999999999999988 7889999999999999999999999999    78889999999999999999999


Q ss_pred             ChHHHHHHHhhc-------CccccccccCCcchHHHHh
Q 045346          140 PKEFHAVMIKKT-------QANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus       140 ~~~~~~~lL~~~-------g~~~~~~n~~g~Tpl~~a~  170 (352)
                      +.+++..|+ ++       |++.+..+..|++|+....
T Consensus       160 ~~~iv~~Ll-~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLS-RHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHH-hCCCcccccCCCCCccccCCCCccchhh
Confidence            988885444 45       7888888888887776654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=2.7e-13  Score=135.06  Aligned_cols=109  Identities=20%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH
Q 045346           25 PIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV  104 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (352)
                      +|+.|+..|+.+.++.|++.++++ +.+| ..|.||||+|+.+|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d-~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRD-YDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            488999999999999999999998 8888 89999999999999999999999999998 88999999999999999999


Q ss_pred             HHHHHHHhcCc---hhhhhhccCCCCCCcHHHHHH
Q 045346          105 EQLTNLLENNP---LARSLINEGDAMENTPLHVLA  136 (352)
Q Consensus       105 ~~v~~Ll~~~~---~~~~~~n~~d~~G~T~Lh~A~  136 (352)
                      +++++|++...   ..+++.+..+.+|++|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999998411   136777778888887776554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5.6e-14  Score=93.52  Aligned_cols=55  Identities=36%  Similarity=0.579  Sum_probs=24.8

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHH
Q 045346            8 VEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLA   64 (352)
Q Consensus         8 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A   64 (352)
                      |+..+.+++.+|..|+||||+|++.|+.+++++|++.+.++ +.+| .+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d-~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKD-KDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T----TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCc-CCCCCHHHhC
Confidence            34344667777777777777777777777777777666666 6666 6777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=3.7e-13  Score=89.00  Aligned_cols=54  Identities=31%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHH
Q 045346           57 KMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL  111 (352)
Q Consensus        57 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  111 (352)
                      |.||||+|++.|+.++++.|++++.++ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888777776 666777888888888888877777764

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.42  E-value=1.4e-13  Score=91.53  Aligned_cols=50  Identities=26%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             hhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346          119 SLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      .++|.+|..|+||||+||..|+.++++.|+ +.|++++.+|++|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            455555555566666666555555554444 45556666666666665554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.42  E-value=8.2e-13  Score=93.40  Aligned_cols=101  Identities=17%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH
Q 045346           25 PIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV  104 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (352)
                      -..|+.++|..+-|+.....+-++ +..  ..|++|||+|+-.|+.+++++|+..|+++ +.+|+.|-|||.-|+..||.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhH
Confidence            456778888888888877777444 332  36788888888888888888888888887 77888888888888888888


Q ss_pred             HHHHHHHhcCchhhhhhccCCCCCCcHHH
Q 045346          105 EQLTNLLENNPLARSLINEGDAMENTPLH  133 (352)
Q Consensus       105 ~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh  133 (352)
                      ++|++|++    .|++-..+..+|.+.+.
T Consensus        81 ~cVklLL~----~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   81 DCVKLLLQ----NGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHH----cCcccceeCCCchhHHh
Confidence            88888888    55555556666765554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=3.8e-12  Score=108.40  Aligned_cols=106  Identities=23%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346            4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus         4 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      ...||.. ..++|.+|++|.|||..|+..|+.++++.|++.|+++...++ ..++||||+|+..|+.++.+.|++.|+..
T Consensus        28 a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-g~~YTpLmFAALSGn~dvcrllldaGa~~  105 (396)
T KOG1710|consen   28 ALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-GTLYTPLMFAALSGNQDVCRLLLDAGARM  105 (396)
T ss_pred             HHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc-cccccHHHHHHHcCCchHHHHHHhccCcc
Confidence            3445543 345788888888888888888888888888888888855566 78888888888888888888888888887


Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHh
Q 045346           84 YELVDNKGWNFLHYAMVSFRVEQLTNLLE  112 (352)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  112 (352)
                       ..+|.-|+|+-..|+.-|+.++|..+-.
T Consensus       106 -~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  106 -YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             -ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence             7788888888888888888888766544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.30  E-value=1.3e-11  Score=105.17  Aligned_cols=118  Identities=22%  Similarity=0.164  Sum_probs=107.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS  101 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (352)
                      -..||.-+...|..+....|++.-... +.+| ..|++||..|+..|+.++|+.|++.|+|++...+..+.||||.|+..
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D-~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRD-PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccC-CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            457999999999999999999875445 8889 89999999999999999999999999999888889999999999999


Q ss_pred             CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHH
Q 045346          102 FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHA  145 (352)
Q Consensus       102 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  145 (352)
                      |+.++.+.|++    .|+.....|.-|+|+-.+|+.-|+.+++.
T Consensus        90 Gn~dvcrllld----aGa~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   90 GNQDVCRLLLD----AGARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             CCchHHHHHHh----ccCccccccchhhhHHHHHHHhcchHHHH
Confidence            99999999999    67777788888999999999999888774

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.5e-11  Score=112.57  Aligned_cols=102  Identities=21%  Similarity=0.198  Sum_probs=67.9

Q ss_pred             HHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHH
Q 045346           64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF  143 (352)
Q Consensus        64 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~  143 (352)
                      |+..|..|+|+.++..-.|+ ..-|.+|.|+||-|+..||.++|++|++    .|+++|..|.+|+||||.|+..++..+
T Consensus       557 aaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhcCchHH
Confidence            56667777777777666555 5566777777777777777777777777    667777777777777777777777666


Q ss_pred             HHHHHhhcCccccccccCCcchHHHHh
Q 045346          144 HAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus       144 ~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      +++|....++-.-..=.++.||.+-+.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcc
Confidence            655554333333344466677766553

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.8e-11  Score=112.05  Aligned_cols=109  Identities=23%  Similarity=0.308  Sum_probs=91.1

Q ss_pred             CCChHHH---HHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHH
Q 045346           21 YGWTPIH---YAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        21 ~g~tpLh---~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      -...||-   =|+..|-.|+|+..+..-.++ ...+ +.|.|+||-|+..||.+||++|++.|+++ +..|.+||||||+
T Consensus       546 vrfnPLaLLLDaaLeGEldlVq~~i~ev~Dp-SqpN-dEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHC  622 (752)
T KOG0515|consen  546 VRFNPLALLLDAALEGELDLVQRIIYEVTDP-SQPN-DEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHC  622 (752)
T ss_pred             eecchHHHHHhhhhcchHHHHHHHHHhhcCC-CCCC-ccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhh
Confidence            3445654   378889999999999877776 5566 79999999999999999999999999999 8999999999999


Q ss_pred             HHhcCCHHHHHHHHhcCchhhhhh-ccCCCCCCcHHHHHH
Q 045346           98 AMVSFRVEQLTNLLENNPLARSLI-NEGDAMENTPLHVLA  136 (352)
Q Consensus        98 A~~~~~~~~v~~Ll~~~~~~~~~~-n~~d~~G~T~Lh~A~  136 (352)
                      |+..++..+++.|++    .|+.+ -..=.++.|+..-+-
T Consensus       623 AASCNnv~~ckqLVe----~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  623 AASCNNVPMCKQLVE----SGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             hhhcCchHHHHHHHh----ccceEEeeecccccchhhhcc
Confidence            999999999999999    44433 334467888876543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.05  E-value=1.2e-10  Score=111.98  Aligned_cols=89  Identities=21%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCC
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNK   90 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (352)
                      .+...|.+|..|+|+||+|++.|..++++.|+++|.++ +.+|.+.|+||||-|...|++|++..|+++|... ..+|++
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dke  118 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKE  118 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEeccc
Confidence            45668999999999999999999999999999999999 8999899999999999999999999999999888 899999


Q ss_pred             CCchhHHHHhc
Q 045346           91 GWNFLHYAMVS  101 (352)
Q Consensus        91 g~t~Lh~A~~~  101 (352)
                      |.+||..-++-
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999988773

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.86  E-value=1.8e-09  Score=104.05  Aligned_cols=92  Identities=23%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             hhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhh
Q 045346           42 LEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI  121 (352)
Q Consensus        42 l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~  121 (352)
                      -+++.+.++++| ..|+|+||+|+..+..++++.|+++|.++.-.....|+||||-|+.+|+.|++-.|++    .|.-+
T Consensus        38 ~k~c~n~anikD-~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~----~g~SL  112 (1267)
T KOG0783|consen   38 EKSCQNLANIKD-RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS----KGRSL  112 (1267)
T ss_pred             HHhhhhhhhHHH-hhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh----cCCce
Confidence            334555566777 6777777777777777777777777777733333457777777777777777777777    55666


Q ss_pred             ccCCCCCCcHHHHHHhc
Q 045346          122 NEGDAMENTPLHVLAAV  138 (352)
Q Consensus       122 n~~d~~G~T~Lh~A~~~  138 (352)
                      ..+|++|..||..-++-
T Consensus       113 ~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             EEecccCCCHHHHHhhc
Confidence            77777777777766663

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=2.8e-08  Score=90.87  Aligned_cols=96  Identities=25%  Similarity=0.262  Sum_probs=85.7

Q ss_pred             ccccCCCCChH------HHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccccc
Q 045346           15 IKETDQYGWTP------IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD   88 (352)
Q Consensus        15 ~~~~d~~g~tp------Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d   88 (352)
                      ...+|.+|.+.      ||-.++.|+.+..-.|+..|++. |..+.+.|.||||.|++.|+..-+++|.-+|+|+ ...|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCC
Confidence            34567777665      89999999999999999999999 5555589999999999999999999999999999 8899


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHh
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLE  112 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~  112 (352)
                      .+|.||+.+|-..||.++.+-|++
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHH
Confidence            999999999999999888887765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.76  E-value=8e-09  Score=93.92  Aligned_cols=93  Identities=22%  Similarity=0.207  Sum_probs=77.2

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHH
Q 045346           55 DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV  134 (352)
Q Consensus        55 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~  134 (352)
                      .++..++.+|++.|....++.+.-.+.|. +.+|.+.+|+||+|+..|+.+++++|++.   .+.+++.+|++|+|||.-
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchH
Confidence            45667888899999999888888888888 88888999999999999999999998886   457788889999999999


Q ss_pred             HHhcCChHHHHHHHhhcC
Q 045346          135 LAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus       135 A~~~~~~~~~~~lL~~~g  152 (352)
                      |...++.+++ .+|.+..
T Consensus       580 A~~F~h~~v~-k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVV-KLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHH-HHHHHHh
Confidence            9888887777 5665443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.73  E-value=4.9e-08  Score=90.66  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             HHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChH
Q 045346           63 LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKE  142 (352)
Q Consensus        63 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~  142 (352)
                      -|+..+..--+...-.+|.+. ..++.+..+.||+|+..|+.|+++++++..+  ...+++.|..|.|+||-|+..++..
T Consensus       872 ~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  872 RAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcchH
Confidence            344444433344444455555 4556666666777777777777777766543  2455666666777777666665533


Q ss_pred             HHHHHHhhcCccccccccCCcchHHHHhhcCCC
Q 045346          143 FHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK  175 (352)
Q Consensus       143 ~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~  175 (352)
                      ++ ++|.+.|+.+...|.+|.||-.-|...++.
T Consensus       949 vc-~~lvdagasl~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  949 VC-QLLVDAGASLRKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             HH-HHHHhcchhheecccCCCChHHHHHhcCCc
Confidence            33 566666777777777777777776666555

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=2.6e-08  Score=92.47  Aligned_cols=115  Identities=21%  Similarity=0.185  Sum_probs=94.0

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCC-ccccccCCCCchhHHHHhcCCH
Q 045346           26 IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPD-CYELVDNKGWNFLHYAMVSFRV  104 (352)
Q Consensus        26 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~  104 (352)
                      +.-|+..++.--++.+...|.+. ..++ .+..+.||+|++.|+-++|+++++++|. +.+..|..|.|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~-~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQG-PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeC-cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            44566666655555555567776 6777 6888999999999999999999999875 4466788999999999999999


Q ss_pred             HHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHH
Q 045346          105 EQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAV  146 (352)
Q Consensus       105 ~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  146 (352)
                      .+.++|++    .|+.+...|..|.||-.-|-+.|+++...+
T Consensus       948 ~vc~~lvd----agasl~ktd~kg~tp~eraqqa~d~dlaay  985 (1004)
T KOG0782|consen  948 AVCQLLVD----AGASLRKTDSKGKTPQERAQQAGDPDLAAY  985 (1004)
T ss_pred             HHHHHHHh----cchhheecccCCCChHHHHHhcCCchHHHH
Confidence            99999998    788888999999999999999998888743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.5e-08  Score=56.75  Aligned_cols=27  Identities=44%  Similarity=0.604  Sum_probs=13.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSA   48 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~   48 (352)
                      |+||||+|++.|+.+++++|+++++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            455555555555555555555544443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.64  E-value=3.5e-08  Score=89.82  Aligned_cols=93  Identities=23%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      ++.++..++.+|++.|+++.++.+.-.+.+. +.+| .+.+|+||.|+..|+.+++++|++......+.+|..|+|||.-
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            3446778899999999999999998888888 8888 8999999999999999999999998766668899999999999


Q ss_pred             HHhcCCHHHHHHHHh
Q 045346           98 AMVSFRVEQLTNLLE  112 (352)
Q Consensus        98 A~~~~~~~~v~~Ll~  112 (352)
                      |...+|.+++++|-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            999999999998876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.62  E-value=1.4e-07  Score=86.45  Aligned_cols=81  Identities=22%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             HHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCC
Q 045346           61 LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP  140 (352)
Q Consensus        61 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (352)
                      ||-.++.|+.+..-.|+..|++++..-...|.||||+|++.|+..-+++|+-    .|++++.+|.+|.||+.+|-..|+
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v----YGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV----YGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh----ccCCCCCCCCCCCcHHHHHHhcCc
Confidence            5556666666666666666666543344456666666666666555555555    556666666666666666666665


Q ss_pred             hHHHH
Q 045346          141 KEFHA  145 (352)
Q Consensus       141 ~~~~~  145 (352)
                      .+..+
T Consensus       213 ~~lae  217 (669)
T KOG0818|consen  213 HELAE  217 (669)
T ss_pred             hHHHH
Confidence            54443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=6.2e-08  Score=56.65  Aligned_cols=27  Identities=41%  Similarity=0.527  Sum_probs=13.7

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346           57 KMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus        57 g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            445555555555555555555555444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.61  E-value=5.1e-08  Score=55.44  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346           56 RKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus        56 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      +|+||||+||+.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788888888888888888888888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=7.5e-08  Score=56.30  Aligned_cols=32  Identities=41%  Similarity=0.572  Sum_probs=29.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCcccccc
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIAN   53 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~   53 (352)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999998 6665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=2e-07  Score=86.29  Aligned_cols=87  Identities=25%  Similarity=0.360  Sum_probs=63.2

Q ss_pred             HHHHHHHcCCHHHHHHHhh-cCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           25 PIHYAAYYGNYGMVNLLLE-IDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      |+|+++.....+-...++. .-...++.+| ..|.||||+|+..|+.+.++.|+..++++ ..+|++|++|||-|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D-~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRD-PPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceecccc-CCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            4888887776555444333 3233346666 67888888888888888888888888877 7788888888888888888


Q ss_pred             HHHHHHHHhc
Q 045346          104 VEQLTNLLEN  113 (352)
Q Consensus       104 ~~~v~~Ll~~  113 (352)
                      .+++..++..
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            7777766654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=2.5e-07  Score=85.69  Aligned_cols=78  Identities=23%  Similarity=0.369  Sum_probs=68.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      .+.+++..+....++.+|..|+||||+|+..|+.+.++.|+..+++. ..++ .+|++|||-|+..|+.+++..++.+..
T Consensus        35 sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN-~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   35 SLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKN-NEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             hHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccc-cccccHHHHHHHcCCHHHHHHHHHHhH
Confidence            34556666667789999999999999999999999999999999998 8888 899999999999999999988887644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.26  E-value=2.3e-06  Score=79.95  Aligned_cols=85  Identities=25%  Similarity=0.227  Sum_probs=49.4

Q ss_pred             HHHHHcCCHHHHHHHhhcCCCc--cccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH
Q 045346           27 HYAAYYGNYGMVNLLLEIDQSA--SNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV  104 (352)
Q Consensus        27 h~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (352)
                      .-|....++..+-+||.+|...  .+...+.+|.|+||+||+.|+..+.++|+-++.|+ ..+|..|+|+|.+|-..|..
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcccH
Confidence            3455555555556666654322  12222245566666666666666666666666666 55666666666666666666


Q ss_pred             HHHHHHHh
Q 045346          105 EQLTNLLE  112 (352)
Q Consensus       105 ~~v~~Ll~  112 (352)
                      |++..|++
T Consensus       708 ec~d~llq  715 (749)
T KOG0705|consen  708 ECIDVLLQ  715 (749)
T ss_pred             HHHHHHHH
Confidence            66666665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.22  E-value=8.8e-07  Score=88.73  Aligned_cols=80  Identities=21%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHH
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI  168 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~  168 (352)
                      ..|.++||.|+.++..-.++.|++    .++++|..|..|+||+|.+...|+..... ++.++|++.++.|.+|++|+++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~-~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIAC-LLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhh-hhccccccccccCccCcchhhH
Confidence            467899999999999999999999    77889999999999999999999888884 4445999999999999999999


Q ss_pred             HhhcC
Q 045346          169 FSYGY  173 (352)
Q Consensus       169 a~~~~  173 (352)
                      |....
T Consensus       729 a~~~~  733 (785)
T KOG0521|consen  729 AMEAA  733 (785)
T ss_pred             Hhhhc
Confidence            97773

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.22  E-value=1.8e-06  Score=86.18  Aligned_cols=85  Identities=22%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhh-CCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHH
Q 045346           55 DRKMTALHLAAGRGHARTVETILSL-SPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH  133 (352)
Q Consensus        55 ~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh  133 (352)
                      -.|++.+|+++..++...++.+++- +... ...|.+|...+|.+ ..++.+...+++..   .+..++.+|.+|+||||
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfc-a~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFC-AALGYEWAFLPISA---DGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHh-hhcCCceeEEEEee---cccccccccCCCCcccc
Confidence            3445555555555555555555543 2222 33344445555552 22223333333322   34445555555555555


Q ss_pred             HHHhcCChHHH
Q 045346          134 VLAAVRPKEFH  144 (352)
Q Consensus       134 ~A~~~~~~~~~  144 (352)
                      +|+..|+...+
T Consensus       647 wAa~~G~e~l~  657 (975)
T KOG0520|consen  647 WAAFRGREKLV  657 (975)
T ss_pred             hHhhcCHHHHH
Confidence            55555544444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=68.27  Aligned_cols=71  Identities=23%  Similarity=0.372  Sum_probs=63.7

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      +.++|.+|..|||||++|+..|+.+.+.+|+++|.......| ..|.+++.+|-+.|+.++++.|-+...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-ESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc-cccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            357899999999999999999999999999999955558899 89999999999999999999998875443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.20  E-value=4e-06  Score=78.42  Aligned_cols=93  Identities=13%  Similarity=0.041  Sum_probs=69.6

Q ss_pred             hHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCC
Q 045346           95 LHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYP  174 (352)
Q Consensus        95 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~  174 (352)
                      |.-|+...+...+..|+.+......+-...+.+|+|+||+||+.|+.... +||.-+|+|+..+|.+|+|||.+|...+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~-QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLA-QLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHH-HHHHHhCccceecccCCchhhhhHhhccc
Confidence            34455556666666777655432233334567789999999999986655 77878999999999999999999999865


Q ss_pred             CcHHHHHHHHHHcCCCC
Q 045346          175 KLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       175 ~~~~~i~~~l~~~g~~~  191 (352)
                      .   +.+..|..+|..+
T Consensus       707 q---ec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 Q---ECIDVLLQYGCPD  720 (749)
T ss_pred             H---HHHHHHHHcCCCc
Confidence            5   7888888877554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.17  E-value=2.7e-06  Score=85.04  Aligned_cols=133  Identities=13%  Similarity=0.061  Sum_probs=100.6

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCc
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWN   93 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t   93 (352)
                      .....-.|++.+|+++..++.-.++.+++- +... ...| .+|...+|+ |..++.+..-+++......++.+|.+|+|
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld-~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELD-RDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhc-ccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCc
Confidence            344455799999999999999999999985 5544 5666 788888888 55666677666666555555899999999


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCchhh--hhhccCCCCCCcHHHHHHhcCChHHHHHHHhhc
Q 045346           94 FLHYAMVSFRVEQLTNLLENNPLAR--SLINEGDAMENTPLHVLAAVRPKEFHAVMIKKT  151 (352)
Q Consensus        94 ~Lh~A~~~~~~~~v~~Ll~~~~~~~--~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (352)
                      |||+|+.+|+..++..|.+.....+  .+++..+..|.|+-.+|-.+|+..+. -+|.+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia-~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIA-GYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchH-HHHhhh
Confidence            9999999999999999987544333  33444556688999988888876665 445443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=2.7e-06  Score=85.31  Aligned_cols=86  Identities=26%  Similarity=0.244  Sum_probs=77.8

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHH
Q 045346           55 DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV  134 (352)
Q Consensus        55 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~  134 (352)
                      ..|.|+||.|+..|...++++|+++++++ +..|..|+||||.+...|+......+++    ++++.+..|.+|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhhH
Confidence            57899999999999999999999999997 9999999999999999999999988888    788999999999999999


Q ss_pred             HHhcCChHHHH
Q 045346          135 LAAVRPKEFHA  145 (352)
Q Consensus       135 A~~~~~~~~~~  145 (352)
                      |....+.+.+.
T Consensus       729 a~~~~~~d~~~  739 (785)
T KOG0521|consen  729 AMEAANADIVL  739 (785)
T ss_pred             HhhhccccHHH
Confidence            98776555553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.99  E-value=1.7e-05  Score=70.82  Aligned_cols=70  Identities=21%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      --|..||+.|..+.+++|++.|.++ |..| +...+||.+|+..||.++|++|+++|+-+ .....+|..++.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD-~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVD-RFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhh-cccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhh
Confidence            3589999999999999999988888 9999 78899999999999999999999999988 655667766543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.96  E-value=2.9e-05  Score=76.32  Aligned_cols=130  Identities=22%  Similarity=0.113  Sum_probs=97.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCC---ccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHH
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQS---ASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA   98 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (352)
                      +.--.-.|+..|+...|+..++....   .+|..| .-|+++||+|..+.+.++.+.|++++-..        ..+|.+|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d-~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRD-PLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccC-hHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            33345689999999999999885433   236778 78999999999999999999999875443        4589999


Q ss_pred             HhcCCHHHHHHHHhcCchhhhhhccCC------CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           99 MVSFRVEQLTNLLENNPLARSLINEGD------AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        99 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d------~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      +..|..+.++.++......+..--..|      ..+-|||.+||..++.|++ ++|.++|+.+......
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil-~~Ll~kg~~i~~PH~~  163 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEIL-QCLLTRGHCIPIPHDI  163 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHH-HHHHHcCCCCCCCccc
Confidence            999999999999986443111000222      3468999999999999999 5555678776554433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.70  E-value=9.1e-05  Score=72.92  Aligned_cols=103  Identities=26%  Similarity=0.167  Sum_probs=83.1

Q ss_pred             HHHHHHHhcc---ccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh
Q 045346            3 ALRKLVEEKK---KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL   79 (352)
Q Consensus         3 ~v~~lL~~~~---~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   79 (352)
                      .|++.++...   -++|.+|.-|+++||.|..+.+.++.++|++++...         ..+|.+|+..|..++|+.++.+
T Consensus        40 ~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   40 LVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAVGSVPLVELLLVH  110 (822)
T ss_pred             HHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHHHHHHHHHHHHHhc
Confidence            4566666554   478999999999999999999999999999875432         3688999999999999999986


Q ss_pred             CCCcc---------ccccCCCCchhHHHHhcCCHHHHHHHHhcC
Q 045346           80 SPDCY---------ELVDNKGWNFLHYAMVSFRVEQLTNLLENN  114 (352)
Q Consensus        80 ~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  114 (352)
                      .....         ...-..+.||+.+||..++.|+++.|++..
T Consensus       111 ~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen  111 FVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             ccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence            43321         112345789999999999999999999843

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.64  E-value=0.00011  Score=59.67  Aligned_cols=63  Identities=22%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhc
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN  113 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  113 (352)
                      |.+| ..|+||++.|+..|..+.+.+|+.+|..-....|..|.+++.+|-+.|..++++.|.+.
T Consensus         6 n~rD-~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    6 NARD-AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             cchh-hhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            8889 89999999999999999999999999443389999999999999999999999999885

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.21  E-value=0.00086  Score=60.24  Aligned_cols=55  Identities=22%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             CcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhc
Q 045346           58 MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN  113 (352)
Q Consensus        58 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  113 (352)
                      .--|..||+.|..+.|+.|++.|.++ |.+|....+||.+|+..||.+++++|+++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLen   91 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLEN   91 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHc
Confidence            45678999999999999999999988 89999999999999999999999999994

>smart00248 ANK ankyrin repeats

Probab=96.88  E-value=0.0018  Score=35.14  Aligned_cols=26  Identities=38%  Similarity=0.503  Sum_probs=16.5

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHhhCCC
Q 045346           57 KMTALHLAAGRGHARTVETILSLSPD   82 (352)
Q Consensus        57 g~tpLh~A~~~g~~~~v~~Ll~~~~~   82 (352)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666665554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.76  E-value=0.0022  Score=34.76  Aligned_cols=28  Identities=43%  Similarity=0.589  Sum_probs=25.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCc
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSA   48 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   48 (352)
                      +|.||+|+|+..++.++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999987654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.35  E-value=0.0066  Score=56.62  Aligned_cols=45  Identities=13%  Similarity=0.120  Sum_probs=39.1

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHh
Q 045346          125 DAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus       125 d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      |.--.|+||+|+..|..+++..+|. .|+|+..+|..|+||++++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            4446799999999999999966665 67999999999999999986

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.38  E-value=0.017  Score=54.03  Aligned_cols=63  Identities=21%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhCCCccc-----cccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHH
Q 045346           70 ARTVETILSLSPDCYE-----LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA  136 (352)
Q Consensus        70 ~~~v~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~  136 (352)
                      .+.+++|.+++.+.+.     ..+.---|+||+|+.+|..+++.++|+    .++|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le----eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE----EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH----hcCCchhcccCCCCcccccc
Confidence            5667777776655422     223445689999999999999999999    67899999999999999887

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.62  E-value=1.6  Score=30.49  Aligned_cols=46  Identities=26%  Similarity=0.252  Sum_probs=24.2

Q ss_pred             cHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHh
Q 045346           59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE  112 (352)
Q Consensus        59 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  112 (352)
                      ..+..|...|+.|+++..++.+ .+    +   ...+..|+..-+.+++++|++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHH
Confidence            3445566666666666555433 11    0   234556666555566666555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.57  E-value=1.9  Score=30.05  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346           23 WTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus        23 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      ..-+..|...|+.|+++.+++.+ .+       + ...+..|+...+.+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~-------~-~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP-------D-NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc-------H-HHHHHHHHHHhhHHHHHHHHHhc
Confidence            34688999999999999999754 21       1 36789999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.63  E-value=3.1  Score=35.44  Aligned_cols=119  Identities=8%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             HHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHh--
Q 045346           60 ALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA--  137 (352)
Q Consensus        60 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~--  137 (352)
                      .|--|+...+.+-+..++....+.        .+++-++..++..+++-+|+........++-.... +---+-++-.  
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~-~~ydieY~LS~h  226 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK-ELYDIEYLLSEH  226 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc-chhhHHHHHhhc
Confidence            345566666666666555433222        24666666666666666666544332222221111 2223444333  


Q ss_pred             cCChHHHHHHHhhcCccccc---cccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          138 VRPKEFHAVMIKKTQANYDA---VNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       138 ~~~~~~~~~lL~~~g~~~~~---~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      ..+..+.++++.+.-+++|.   +-+.|.|-||-|...++.   +++..|.+.|+.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~---emi~~Llk~GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNS---EMIAFLLKYGAI  279 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcH---HHHHHHHHcCcc
Confidence            22445555555544456553   346777888888777544   777777777764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=83.57  E-value=24  Score=29.22  Aligned_cols=135  Identities=15%  Similarity=0.012  Sum_probs=84.8

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      -.+.-|+..+..++++..-+.....    - ...++..-.||+..+.|+|+++-++-.      -.+-.+.+.+|...++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~-~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----R-YLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----h-hHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhccc
Confidence            3456788888888887765532211    1 355678889999999999999955322      2233567788888888


Q ss_pred             HHHHHH----HHhcCchhhhhhcc--CCCC--CCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCC
Q 045346          104 VEQLTN----LLENNPLARSLINE--GDAM--ENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK  175 (352)
Q Consensus       104 ~~~v~~----Ll~~~~~~~~~~n~--~d~~--G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~  175 (352)
                      .+....    +++.      ..+.  .|..  -+.-|+.|+..|-...+.+.|+ +|.+++.      +++..|+...  
T Consensus       117 lsLyslGY~l~~~~------~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~yn--  181 (192)
T PF03158_consen  117 LSLYSLGYKLLFNR------MMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYN--  181 (192)
T ss_pred             hhHHHHHHHHHHhh------cccccccCHHHHHHHHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhh--
Confidence            765321    1111      0111  1100  1234678999998888877776 6666653      7888888874  


Q ss_pred             cHHHHHHHHH
Q 045346          176 LKEEIQKLSK  185 (352)
Q Consensus       176 ~~~~i~~~l~  185 (352)
                       ...|+.++.
T Consensus       182 -hRkIL~yfi  190 (192)
T PF03158_consen  182 -HRKILDYFI  190 (192)
T ss_pred             -HHHHHHHhh
Confidence             447776654

These proteins may be involved in promoting survival of infected macrophages [].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.89  E-value=3.6  Score=28.88  Aligned_cols=50  Identities=26%  Similarity=0.073  Sum_probs=33.6

Q ss_pred             hhHhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhccC
Q 045346          262 AFIVADSIAMVFSLSAVFTHFLMSLKIEATKDFDGALFGASLWLTLFSMGAMVIAFVTGTYAMLVP  327 (352)
Q Consensus       262 ~F~~~n~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~~~  327 (352)
                      +++++|.+||..|.+.+.+.++..+-+-..                =+..+|.++|.+|+.+.+..
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~----------------KGy~~MG~lfltgSt~tL~K   64 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWT----------------KGYWAMGILFLTGSTVTLVK   64 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHH----------------HHHHHHHHHHHhcchhhhhH
Confidence            367899999999999888766654444111                12345778888888766644

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=81.74  E-value=6.5  Score=33.59  Aligned_cols=47  Identities=17%  Similarity=0.112  Sum_probs=23.6

Q ss_pred             CHHHHHHHHhcCchhhhhhc---cCCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346          103 RVEQLTNLLENNPLARSLIN---EGDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus       103 ~~~~v~~Ll~~~~~~~~~~n---~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      +..++++.++.+.   .++|   .+-+.|.|-|.-|.++++.+.+. +|+++|+
T Consensus       229 ~~kvL~~Fi~~Gl---v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~-~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGL---VDVNKKFQKVNSGDTMLDNAMKYKNSEMIA-FLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccc---cccchhhhccCCcchHHHhHHhcCcHHHHH-HHHHcCc
Confidence            3445555555332   2233   23345666666666666666653 3333554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-04

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D  GWTP+H AAY+G+  +V +LL+    A   A+    +T LHLAA RGH   VE
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 75  TILSLSPDCYELVDNKGWNFLHYA 98
            +L    D     D+ G+  LH A
Sbjct: 98  VLLKNGADV-NANDHNGFTPLHLA 120

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
           +   D  GWTP+H AA++G+  +V +LL   ++ +++  KD   +T LHLAA RGH   V
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           E +L    D     D+ G+  LH A     +E +  LL+N
Sbjct: 97  EVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +  TD  G TP+H AA  G   +V +LL+   D +AS+ A     +T LHLAA  GH   
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG----ITPLHLAAYDGHLEI 87
Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           VE +L    D     D  GW  LH A +S ++E +  LL++
Sbjct: 88  VEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKH 127

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D+ G+TP+H AA  G+  +V +LL   ++ +++  KD+   T LHLAA  GH   V
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
           E +L    D     D  G+  LH A     +E +  LL+    A + +N  D    TP
Sbjct: 85  EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D+ G+TP+H AA  G+  +V +LL   ++ +++  KD+   T LHLAA  GH   V
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
           E +L    D     D  G+  LH A     +E +  LL+    A + +N  D    TP
Sbjct: 85  EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
           G TP+H AA  G+  +V LLLE   + +++  KD+   T LHLAA  GH   V+ +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
            D     D  G   LH A  +  +E +  LLE    A + +N  D    TPLH+ A
Sbjct: 59  ADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 109

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D+ G+TP+H AA  G+  +V +LL   ++ +++  KD+   T LHLAA  GH   V
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 96
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
           E +L    D     D  G+  LH A     +E +  LL+
Sbjct: 97  EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D  GWTP+H AAY+G+  +V +LL+    A   A      T LHLAA  GH   VE
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLK--NGADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
            +L    D     DN G   LH A     +E +  LL+
Sbjct: 98  VLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLK 134

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +  TD  G+TP+H AA  G+  +V +LL+   D +AS++      +T LHLAA  GH   
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG----ITPLHLAAATGHLEI 95
Query: 73  VETILSLSPDCYELVDNKGWNFLHYA 98
           VE +L    D     DN G   LH A
Sbjct: 96  VEVLLKHGADV-NAYDNDGHTPLHLA 120

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP 81
           G+TP+H AA YG   +  LLLE D +  N A K+  +T LH+A    +   V+ +L    
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 82  DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN------TPLHVL 135
             +    N G+  LH A    +VE          +ARSL+  G +         TPLH+ 
Sbjct: 204 SPHSPAWN-GYTPLHIAAKQNQVE----------VARSLLQYGGSANAESVQGVTPLHLA 252
Query: 136 AAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS 170
           A     E  A+++ K QAN +  NK  ++  H+ +
Sbjct: 253 AQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVA 286

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +  TD  G TP+H AA YG+  +V +LL+   D +A +I       T LHLAA  GH   
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEI 95
Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           VE +L    D    VD  G   LH A +   +E +  LL++
Sbjct: 96  VEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D  G TP+HYAA  G+  +V LL  I + A   A      T LH AA  GH   V+
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLL--ISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
            ++S   D     D+ G   LHYA      E +  L+       + +N  D+   TPL
Sbjct: 88  LLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKG----ADVNTSDSDGRTPL 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +  TD  G TP+H AA YG+  +V +LL+   D +A +I       T LHLAA  GH   
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEI 95
Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           VE +L    D    VD  G   LH A +   +E +  LL++
Sbjct: 96  VEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D+ GWTP+H AAY G+  +V +LL+     +  A   +  T LHLAA  GH   VE
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN--AMDYQGYTPLHLAAEDGHLEIVE 130
Query: 75  TILSLSPDC 83
            +L    D 
Sbjct: 131 VLLKYGADV 139

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
           +D  G TP+HYAA  G+  +V LLL   + A   A      T LH AA  GH   V+ +L
Sbjct: 33  SDSDGRTPLHYAAENGHKEIVKLLLS--KGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVE 105
           S   D     D+ G   LHYA  +   E
Sbjct: 91  SKGADPN-AKDSDGRTPLHYAAENGHKE 117

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
          TD  G +P+H AA YG++    +LL    S       DR  T LH+AA  GHA  VE +L
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Query: 78 SLSPD 82
              D
Sbjct: 88 KHGAD 92

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D  GWTP+H AA+ G+  +V +LL   ++ +++   D   MT L LAA  GH   V
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           E +L    D     D +G   LH A +   +E +  LL+N
Sbjct: 97  EVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D  G TP+H AA  G+  +V LLL   Q A   A      T LHLAA  GH   V+
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLS--QGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVE 105
            +LS   D     D+ G   LH A  +   E
Sbjct: 88  LLLSQGADPN-AKDSDGKTPLHLAAENGHKE 117

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D +G+TP+H AAY+G+  +V +LL+    A   A     MT LHLAA  G+   VE
Sbjct: 73  VDASDVFGYTPLHLAAYWGHLEIVEVLLK--NGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 75  TILSLSPDC 83
            +L    D 
Sbjct: 131 VLLKHGADV 139

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D  GWTP+H AA  G+  +V +LL+    A   A     +T LHLAA RGH   VE
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 75  TILSLSPDC 83
            +L    D 
Sbjct: 131 VLLKHGADV 139

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 52  ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
           A+ D+  T LHLAA  GH   VE +L    D     D  GW  LH A  +  +E +  LL
Sbjct: 42  AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 112 ENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FS 170
           +      + +N  DA   TPLH+ A     E   V++K   A+ +A +K   +   I   
Sbjct: 101 KYG----ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISID 155
Query: 171 YGYPKLKEEIQKLS 184
            G   L E +QKL+
Sbjct: 156 NGNEDLAEILQKLN 169

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD-RKMTALHLAAGRGHARTV 73
           +   D YG TP+H AA  G+  +V +LL   ++ +++   D    T LHLAA RGH   V
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIV 96
Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
           E +L    D     D  G   LH A  +  +E +  LL+
Sbjct: 97  EVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4   LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
           L++ +   K +   TDQ   T +H+A   G+  +V  LL++    ++    D   + LH+
Sbjct: 23  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 80
Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
           AA  G    V+ +L         V+  G   LHYA    R E    LLE   NP A+   
Sbjct: 81  AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 136
Query: 122 NEGDAMENTPLHVLAA 137
              D  E T +H  AA
Sbjct: 137 ---DHYEATAMHRAAA 149

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4   LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
           L++ +   K +   TDQ   T +H+A   G+  +V  LL++    ++    D   + LH+
Sbjct: 22  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 79
Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
           AA  G    V+ +L         V+  G   LHYA    R E    LLE   NP A+   
Sbjct: 80  AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 135
Query: 122 NEGDAMENTPLHVLAA 137
              D  E T +H  AA
Sbjct: 136 ---DHYEATAMHRAAA 148

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
           A+R  ++  +  + + D +G++P+H+A   G   +V +L+ +  +  N+ N+    T LH
Sbjct: 20  AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLH 77
Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
           LAA  GH   V+ +L    D    V+  G   LHYA    + +   +L+ N  L
Sbjct: 78  LAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
           A+R  ++  +  + + D +G++P+H+A   G   +V +L+ +  +  N+ N+    T LH
Sbjct: 15  AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLH 72
Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
           LAA  GH   V+ +L    D    V+  G   LHYA    + +   +L+ N  L
Sbjct: 73  LAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           E++ +I  TD+ G+TP+ +AA +G   +V  LL+ + +   +  K R+ +AL LA  +G+
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 79
Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
              V+ +L    D  E   N G   L YA+    V+ +  LLE+
Sbjct: 80  TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 122

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           E++ +I  TD+ G+TP+ +AA +G   +V  LL+ + +   +  K R+ +AL LA  +G+
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 81
Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
              V+ +L    D  E   N G   L YA+    V+ +  LLE+
Sbjct: 82  TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 124

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           E++ +I  TD+ G+TP+ +AA +G   +V  LL+ + +   +  K R+ +AL LA  +G+
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 97
Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
              V+ +L    D  E   N G   L YA+    V+ +  LLE+
Sbjct: 98  TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 140

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
           G TP+H AA  G+  +V LLLE   + +++  KD+   T LHLAA  GH   V+ +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
            D     D  G   LH A  +  +E +  LLE
Sbjct: 59  ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D+ G TP+H AA YG+  +V +LL+    A   A      T LHLAA  GH   VE
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 75  TILSLSPDC 83
            +L    D 
Sbjct: 131 VLLKYGADV 139

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  +D  G TP+H+AA  G+  +V LL  I + A   A      T LH AA  GH   V+
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVVKLL--ISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
            ++S   D     D+ G   LH+A  +   E +  L+       + +N  D+   TPL
Sbjct: 88  LLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPL 140

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D+ G TP+H AA  G+  +V +LL+    A   A  +  +T LHLAA RGH   VE +L 
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKY--GADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 79  LSPDC 83
              D 
Sbjct: 102 HGADV 106

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +   D YG+TP+H AA  G+  +V +LL+   D +A ++       T LHLAA  GH   
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEGHLEI 128
Query: 73  VETILSLSPDC 83
           VE +L    D 
Sbjct: 129 VEVLLKYGADV 139

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +  TD  G TP+H AA  G+  +V +LL+     +  A  +   T LHLAA  GH   VE
Sbjct: 40  VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN--AWDNYGATPLHLAADNGHLEIVE 97
Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
            +L    D     D +G+  LH A     +E +  LL+
Sbjct: 98  VLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
          D YG TP+H AA  G+  +V +LL     A   A      T LHLAA  GH   VE +L 
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 79 LSPDC 83
             D 
Sbjct: 90 YGADV 94

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           +   D  G TP+H AA  G+  +V +LL+   D +AS+I  +    T LHLAA  GH   
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR----TPLHLAATVGHLEI 95
Query: 73  VETILSLSPDC 83
           VE +L    D 
Sbjct: 96  VEVLLEYGADV 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	3e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	5e-11
2pnn_A	273	Transient receptor potential cation channel subfa	8e-10
2pnn_A	273	Transient receptor potential cation channel subfa	8e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-12
2etb_A	256	Transient receptor potential cation channel subfam	5e-13
2etb_A	256	Transient receptor potential cation channel subfam	4e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.0 bits (209), Expect = 5e-19
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS---NIANKDRKMTALHLAAGRGHA 70
           M    D+ G TP+H A   GN   V+ L+ + Q      +I N  R+ T LHLA      
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
             V  +++        +D  G    H A        L  LL++       +   +    T
Sbjct: 60  SVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118

Query: 131 PLHVLAA 137
            LH +A 
Sbjct: 119 ALH-VAV 124

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.5 bits (192), Expect = 9e-17
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 15/127 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRGHART 72
           ++  +  G T +H A        V LL  +++ A +I   D K   + L  A        
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLL--LERGA-DIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENT 130
           V+ +L    +        G + LH A     +  +  L+ +  +       +  +   +T
Sbjct: 166 VQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDT 218

Query: 131 PLHVLAA 137
           PL  +A 
Sbjct: 219 PLM-VAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.0 bits (157), Expect = 5e-12
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +      G + +H A+  G   +V  L  +   A  ++ N     T L +A  R     +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTL--VRSGADSSLKNCHND-TPLMVARSRRVIDIL 232

Query: 74  ETILS 78
               +
Sbjct: 233 RGKAT 237

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           ++  +  G TP+H A  + +  MV LL   D  A  N        T LHLA     A  +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +L    D        G   L  A++         L  +   A     E    + +P  
Sbjct: 209 ELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRAHG--AP--EPEDGGDKLSPCS 263

Query: 134 VLAA 137
             + 
Sbjct: 264 -SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHARTVE 74
              + G T +H A  + +   ++ LL         ++ N   + TALHLAA  G A TVE
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVE 62

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFR-----VEQL------TNLLENNPLARSLINE 123
            + +         +  G   LH A             L           ++       + 
Sbjct: 63  KLYAAGAGVLV-AERGGHTALHLA--CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK 160
                + P  V +   P+       +  +   +A N 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 20/140 (14%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGH 69
             + +   +  G T +H AA  G    V  L      A   +A +    TALHLA     
Sbjct: 34  GHEYLDLQNDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGH-TALHLACRVRA 90

Query: 70  ARTVETILS------------LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
                 +L                   +   +                +     E+  L 
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150

Query: 118 RSLINEGDAMENTPLHVLAA 137
              +   +   +TPLH +A 
Sbjct: 151 ---LEAENYDGHTPLH-VAV 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                  G TP+  A    N  +  LL      A       D+  +    +     +   
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLL--RAHGAPEPEDGGDKL-SPCSSSGSDSDSDNR 274

Query: 74  ETILS 78
           +    
Sbjct: 275 DEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE------------IDQSASNIANKDRKMTALH 62
           +   ++ G T +H A     +    +LL+                + +         A  
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
            +                    E  +  G   LH A++    E +  L +      + +N
Sbjct: 131 DSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAG----ADLN 185

Query: 123 EGDAME-NTPLHVLAA 137
           + +     TPLH LA 
Sbjct: 186 KPEPTCGRTPLH-LAV 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 16  KETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSAS-NIANKDRKMTALHLAAGRGHART 72
           ++  + G + +H A  +    +   ++       A  N  N  ++ T LHLA        
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENT 130
            E +L    D  EL D +G   LH A     +  +  L ++   P   S++   +   +T
Sbjct: 61  AEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 131 PLHVLAA 137
            LH LA+
Sbjct: 120 CLH-LAS 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   +    TP+H A       +   L  +       + +     T LHLA  +G   +V
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEAL--LGAGCDPELRDFRGN-TPLHLACEQGCLASV 94

Query: 74  ETILS-----LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDA 126
             +             +  +  G   LH A +   +  +  L+    +      +N  + 
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEP 148

Query: 127 ME-NTPLHVLAA 137
               T LH LA 
Sbjct: 149 CNGRTALH-LAV 159

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE-----IDQSASNIANKDRKMTALHLAAGRGH 69
            +  D  G TP+H A   G    V +L +        S     N +   T LHLA+  G+
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH-TCLHLASIHGY 129

Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN 129
              VE ++SL  D        G   LH A+     + ++ LL+      + +N       
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGY 185

Query: 130 TPLHVLAAVR 139
           +P   L   R
Sbjct: 186 SPYQ-LTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 8e-13
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETI 76
               G T +H A    N  +V+LL  +   A  N        +   L  GR   R  + +
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLL--LKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQL 203

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVS 101
             L+ +  + +  +  +   Y   S
Sbjct: 204 GQLTLENLQ-MLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 5/60 (8%), Positives = 12/60 (20%), Gaps = 2/60 (3%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +      G++P        +  +   L     +  N+                      E
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQL--GQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 3e-18
 Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVET 75
             D  GWTP H A   GN  +V  L +       N        T LHLA G+      + 
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVSQF 125

Query: 76  ILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL 135
           ++          D      LH A     ++ +  L       +S +N  D    TPL   
Sbjct: 126 LIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLG---KSAVNWQDKQGWTPLF-H 180

Query: 136 AA 137
           A 
Sbjct: 181 AL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 4e-17
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           + +    G T +H A     + +   L  I+  AS  I +K  +   LH AA  G  + +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFL--IENGASVRIKDKFNQ-IPLHRAASVGSLKLI 156

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +  L        D +GW  L +A+     +    LL     A    +  D        
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAE--YDLVDNKGAKAED 213

Query: 134 V 134
           V
Sbjct: 214 V 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           ++  D++   P+H AA  G+  ++ LL  + +SA N  +K    T L  A   GH     
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAV 191

Query: 75  TILSLSPDCYELVDNKGWNFLHYA 98
            ++      Y+LVDNKG      A
Sbjct: 192 LLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           + + DQ G  P+H++  +  + + + L  + +   N+   D       T  H+A   G+ 
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME-NVNLDDYPDDSGWTPFHIACSVGNL 85

Query: 71  RTVETILSLSPDCY-ELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAM 127
             V+++           + N+G   LH A+     E    L+EN  +      +   D  
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKF 139

Query: 128 ENTPLHVLAA 137
              PLH  AA
Sbjct: 140 NQIPLHR-AA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.7 bits (177), Expect = 8e-15
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
              P+H A     +  V  LL   + +     ++D +   LH +           +LS  
Sbjct: 2   SNYPLHQACMENEFFKVQELL-HSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKM 59

Query: 81  PD--CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
            +    +  D+ GW   H A     +E + +L +        +N+      T LH LA 
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--LNKITNQGVTCLH-LAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.4 bits (132), Expect = 8e-09
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D+ GWTP+ +A   G+     LL+E   +  ++ +      A  +A    + +  +
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVKK 222

Query: 75  TILS 78
             L+
Sbjct: 223 FFLN 226

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 81.0 bits (201), Expect = 7e-18
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
               D  G TP+H A      G+  +L  I   A+++  +     T L LAA       +
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGML 140

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +++   D    VD+ G + LH+A     V+    LL+N     +  +  +  E TPL 
Sbjct: 141 EDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNG----ANKDMQNNREETPLF 195

Query: 134 VLAA 137
            LAA
Sbjct: 196 -LAA 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 7   LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAA 65
           L+  +   +      G TP+  AA     GM+  L  I+  A  N  +   K +ALH AA
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL--INSHADVNAVDDLGK-SALHWAA 165

Query: 66  GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINE 123
              +      +L    +  ++ +N+    L  A      E    LL++  N       + 
Sbjct: 166 AVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN------RDI 218

Query: 124 GDAMENTPLHV 134
            D M+  P  +
Sbjct: 219 TDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.0 bits (183), Expect = 2e-15
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVET 75
           +TD+ G T +H AA Y        L  ++ SA  NI +   + T LH A         + 
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGR-TPLHAAVSADAQGVFQI 108

Query: 76  ILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL 135
           ++       +   + G   L  A     VE +   L N+    + +N  D +  + LH  
Sbjct: 109 LIRNRATDLDARMHDGTTPLILA-ARLAVEGMLEDLINS---HADVNAVDDLGKSALH-W 163

Query: 136 AA 137
           AA
Sbjct: 164 AA 165

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.1 bits (165), Expect = 6e-13
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYG-------------MVNLLLEIDQSASNIANKDRKMTAL 61
           +      G+TP+  A+  G                +++  +    S  N  ++  + TAL
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TAL 61

Query: 62  HLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI 121
           HLAA    +   + +L  S D     DN G   LH A+ +        L+ N     + +
Sbjct: 62  HLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRN---RATDL 117

Query: 122 NEGDAMENTPLHVLAA 137
           +       TPL  LAA
Sbjct: 118 DARMHDGTTPLI-LAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               +    TP+  AA  G+Y    +L  +D  A+ +I +   +     +A  R H   V
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVL--LDHFANRDITDHMDR-LPRDIAQERMHHDIV 239

Query: 74  ETILS 78
             +  
Sbjct: 240 RLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK 54
              TD     P   A    ++ +V LL        +  + 
Sbjct: 216 RDITDHMDRLPRDIAQERMHHDIVRLLDL---EHHHHHHH 252

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
               D  G TP+H A      G+  +L  I   A+++  +     T L LAA       +
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGML 108

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +++   D    VD+ G + LH+A     V+    LL+N   A    +  +  E TPL 
Sbjct: 109 EDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNG--AN--KDMQNNREETPLF 163

Query: 134 VLAA 137
            LAA
Sbjct: 164 -LAA 166

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.8 bits (193), Expect = 6e-17
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +      G TP+  AA     GM+  L  I+  A  N  +   K +ALH AA   +    
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDL--INSHADVNAVDDLGK-SALHWAAAVNNVDAA 141

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTP 131
             +L    +     +N+    L  A      E    LL++  N       +  D M+  P
Sbjct: 142 VVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDHFAN------RDITDHMDRLP 194

Query: 132 LHV 134
             +
Sbjct: 195 RDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVET 75
           +TD+ G T +H AA Y        L  ++ SA  NI +   + T LH A         + 
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGR-TPLHAAVSADAQGVFQI 76

Query: 76  ILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL 135
           ++       +   + G   L  A        L +L+ ++    + +N  D +  + LH  
Sbjct: 77  LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSALH-W 131

Query: 136 AA 137
           AA
Sbjct: 132 AA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D  G + +H+AA   N     +L  +   A+ ++ N   + T L LAA  G   T 
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVL--LKNGANKDMQNNREE-TPLFLAAREGSYETA 174

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L    +     D+        A      +          + R L      + +  LH
Sbjct: 175 KVLLDHFANRDI-TDHMDRLPRDIAQERMHHD----------IVRLLDEYN-LVRSPQLH 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
              TDQ   T +H+A   G+  +V  L  +      N  +     + LH+AA  G    V
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFL--LQLGVPVNDKDDAGW-SPLHIAASAGXDEIV 89

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L         V+  G   LHYA    R E    LLE      +  +  D  + T +H
Sbjct: 90  KALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPDAKDHYDATAMH 144

Query: 134 VLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSY 171
             AA    +   +++   +A+ +  +    +  H+   
Sbjct: 145 RAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACD 181

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 10/155 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           + + D  GW+P+H AA  G   +V  LL      +++   ++   T LH AA +      
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
             +L    +     D+     +H A     ++ +  LL       +  N  D   NTPLH
Sbjct: 123 VMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYK----ASTNIQDTEGNTPLH 177

Query: 134 VLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI 168
           +       E    ++ +  A+    NK   +   +
Sbjct: 178 LACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 10/151 (6%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
                + A       +   +  +   +     ++D + TALH A   GH   VE +L L 
Sbjct: 7   NIMICNLAYSGKLDELKERI--LADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLG 63

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP 140
               +  D+ GW+ LH A  +   E +  LL       + +N  +    TPLH  A+   
Sbjct: 64  VPVND-KDDAGWSPLHIAASAGXDEIVKALLVKG----AHVNAVNQNGCTPLHYAASKNR 118

Query: 141 KEFHAVMIKKTQANYDAVNKRNVSVRHIFSY 171
            E   ++++   AN DA +  + +  H  + 
Sbjct: 119 HEIAVMLLEG-GANPDAKDHYDATAMHRAAA 148

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLA 64
           K +  K   +   +Q G TP+HYAA    + +  +LLE     +N   KD    TA+H A
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHYDATAMHRA 146

Query: 65  AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG 124
           A +G+ + V  +L          D +G   LH A    RVE+   L+       + I   
Sbjct: 147 AAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQG----ASIYIE 201

Query: 125 DAMENTPLHVLA 136
           +  E TPL V  
Sbjct: 202 NKEEKTPLQVAK 213

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLA 64
            + +  K    ++D      IH AA  G    V  L  I+   S  I N+    TALHLA
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRL--IETGVSPTIQNRF-GCTALHLA 60

Query: 65  AGRGHARTVETILSLSPDCYELVDNK-GWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
              G   T + + S+            G   +H A+++ + +          L  +L+  
Sbjct: 61  CKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTD----------LVVALVEG 106

Query: 124 GDAMENTPLHVLA 136
                  P  +L 
Sbjct: 107 AKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 16/136 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
               D+   TP+  A  + N   ++L+++   S  +    D       + LH A      
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPS-KSSLRLDYANKQGNSHLHWAILINWE 224

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYA-------MVSFRVEQLTNLLENNPLAR--SLI 121
                 + +  D   + DN+    L+ +       +    +++    L         + +
Sbjct: 225 DVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 122 NEGDAMENTPLHVLAA 137
                +    +   AA
Sbjct: 284 LPDRVVWLDFVP-AAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 13/133 (9%), Positives = 34/133 (25%), Gaps = 20/133 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   ++ G + +H+A       +      ++     N+ + +     L+L+         
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRF--VEMGIDVNMEDNEHT-VPLYLSVRAAMVLLT 260

Query: 74  ETILSLSPDCYEL------------VDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI 121
           + +L  +                        +F+  A    + E L  L E        +
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL----DEV 316

Query: 122 NEGDAMENTPLHV 134
                        
Sbjct: 317 VRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 5e-15
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 2   AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYG--MVNLLLEIDQSAS-NIANKDRKM 58
                  E  +         G T +H+    G     M+ +L  +   AS    +K  + 
Sbjct: 118 LNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL--VQLGASPTAKDKADE- 174

Query: 59  TALHLAAGRGHARTVETILSLSPDCY----ELVDNKGWNFLHYAMVSFRVEQLTNLLENN 114
           T L  A    +   ++ ++   P       +  + +G + LH+A++    +     +E  
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 115 PLARSLINEGDAMENTPLHVLAA 137
                 +N  D     PL+ L+ 
Sbjct: 235 --ID--VNMEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA--GRGHART 72
           ++   + G  P           +  +         ++ +   + TALH     G  +   
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIGS-------HVKHCKGQ-TALHWCVGLGPEYLEM 155

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL-INEGDAMENTP 131
           ++ ++ L        D      L  AM     E L  +++  P   SL ++  +   N+ 
Sbjct: 156 IKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214

Query: 132 LHVLAA 137
           LH  A 
Sbjct: 215 LH-WAI 219

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 6/83 (7%), Positives = 15/83 (18%), Gaps = 5/83 (6%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVET 75
                    +  AA      ++ LL   ++      +              +        
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLL--QEKLDEVVRSLNTGA-GGAVKRKKKAAPAVKRM 341

Query: 76  ILSLSPDCYELVDNKGWNFLHYA 98
            L+ S                 +
Sbjct: 342 KLAPSAPV-RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 4/51 (7%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLA 64
           +  +   G              +  +   +  SA     ++ R   +  ++
Sbjct: 316 VVRSLNTGAGGAVKRKKKAAPAVKRMK--LAPSAPVRTRSRSRA-RSSAVS 363

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.8 bits (198), Expect = 5e-17
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 23/153 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D+ G  P+H A  YG+Y +  LL  +   A  N  +  +  T LH AA +      
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELL--LKHGACVNAMDLWQF-TPLHEAASKNRVEVC 140

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL-----------ARSLIN 122
             +LS   D   LV+  G + +  A      E+LT   + + L            +  + 
Sbjct: 141 SLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199

Query: 123 EGDAMEN------TPLHVLAAVRPKEFHAVMIK 149
                        T LH  A          + +
Sbjct: 200 LEIINFKQPQSHETALH-CAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
              +D    TP+H AA Y    +V LL  +   A  +  +K   +  LH A   GH    
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLL--LQHGADVHAKDKG-GLVPLHNACSYGHYEVT 107

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +L         +D   +  LH A    RVE  + LL +     +     +    + + 
Sbjct: 108 ELLLKHGACVNA-MDLWQFTPLHEAASKNRVEVCSLLLSHG----ADPTLVNCHGKSAVD 162

Query: 134 V 134
           +
Sbjct: 163 M 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           + E ++   TP+H AA   +  ++ +L      A  N  +   + TALH AA  GH +T 
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVL--HKHGAKMNALDSLGQ-TALHRAALAGHLQTC 296

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
             +LS   D   ++  +G+            E +  +L  +    + +   D   +  L 
Sbjct: 297 RLLLSYGSDP-SIISLQGFTAAQMG-----NEAVQQILSES----TPMRTSD--VDYRLL 344

Query: 134 VLAA 137
             A+
Sbjct: 345 -EAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
              T +Y    +  AA  GN   +  LL    + + + ++   K T LHLAAG    R V
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALL-TPLNVNCHASDGR-KSTPLHLAAGYNRVRIV 74

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L    D     D  G   LH A      E    LL++     + +N  D  + TPLH
Sbjct: 75  QLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDLWQFTPLH 129

Query: 134 VLAA 137
             AA
Sbjct: 130 -EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 33  GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHA-RTVETILSLSPDCYELVDNKG 91
           G +G   L L  D SA  +   + K   L  AA  G+  + +  +  L+ +C    D + 
Sbjct: 1   GEFGKSALDL-ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRK 58

Query: 92  WNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
              LH A    RV  +  LL++     + ++  D     PLH  A 
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHG----ADVHAKDKGGLVPLH-NAC 99

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.1 bits (191), Expect = 7e-17
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           I   +    +P  YA   G   ++  +  +  +  ++   +R    AL  AA +GH   V
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYM--LKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI------NEGDAM 127
           + +L    +  +  ++ G+  L  A+      Q     +   + + L+      +  D  
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ--LYQD---IVKLLMENGADQSIKDNS 177

Query: 128 ENTPLHV 134
             T +  
Sbjct: 178 GRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           + E D  G TP++ A +  +  +   L  ID+ A  N+ N     +    A  +G    +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKAL--IDRGADINLQNSISD-SPYLYAGAQGRTEIL 88

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFR-----VEQLTNLLENNPLARSLINEGDAME 128
             +L  +       +  G N L  A  + +     V+ L      +      I+  +   
Sbjct: 89  AYMLKHATPDLNKHNRYGGNALIPA--AEKGHIDNVKLLLEDGRED------IDFQNDFG 140

Query: 129 NTPLHVLAAVRPKEFH 144
            T L   A    +   
Sbjct: 141 YTALI-EAVGLREGNQ 155

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA-----GRGH 69
           + + ++YG   +  AA  G+   V LLLE  +   +  N     TAL  A       + +
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGNQLY 157

Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYA 98
              V+ ++    D   + DN G   + YA
Sbjct: 158 QDIVKLLMENGADQ-SIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETIL 77
                  +  A       +  +L   D +   +  + +   T L++A         + ++
Sbjct: 3   TYEVGALLEAANQRDTKKVKEIL--QDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALI 59

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
               D   L ++   +   YA    R E L  +L++   A   +N+ +      L   AA
Sbjct: 60  DRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALI-PAA 114

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 5e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYG-----MVNLLLEIDQSAS-NIANKDRKMTALHLAAGRG 68
           I   + +G+T +  A            +V LL  ++  A  +I +   + TA+  A  +G
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLL--MENGADQSIKDNSGR-TAMDYANQKG 189

Query: 69  HARTVETILS 78
           +    + +  
Sbjct: 190 YTEISKILAQ 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.8 bits (193), Expect = 8e-17
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D  G T +H AA  G+Y +V  L  +     ++  +D    T +  A    H   V
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYL--LSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +LS   D   + DN+    LH+A  S  V+    LL         ++  +   ++PLH
Sbjct: 128 KLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAK----CDLHAVNIHGDSPLH 182

Query: 134 VLAA 137
            +AA
Sbjct: 183 -IAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 7   LVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAA 65
           L+   +  +   D  GWTP+ +A  Y +  +V LL  + + +  NI + +     LH AA
Sbjct: 96  LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL--LSKGSDINIRDNEEN-ICLHWAA 152

Query: 66  GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
             G     E +L+   D +  V+  G + LH A    R + +   L  +    S +   +
Sbjct: 153 FSGCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRD----SDVTLKN 207

Query: 126 AMENTPLHV 134
               TPL  
Sbjct: 208 KEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.9 bits (188), Expect = 3e-16
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
            K   Q   +P+H AA  G+  + ++L  +   A+ +  ++D + T L  AA   H   V
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHML--VQAGANIDTCSED-QRTPLMEAAENNHLEAV 60

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + ++          D +G   LH A      E +  LL N    +  +N  D    TP+ 
Sbjct: 61  KYLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNG---QMDVNCQDDGGWTPMI 116

Query: 134 VLAA 137
             A 
Sbjct: 117 -WAT 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 3e-14
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I   D      +H+AA+ G   +  +L  +      +  N     + LH+AA       V
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEIL--LAAKCDLHAVNIHGD-SPLHIAARENRYDCV 193

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
              LS   D   L + +G   L  A
Sbjct: 194 VLFLSRDSD-VTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.2 bits (155), Expect = 9e-12
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   + +G +P+H AA    Y  V L   + + +   + NK+ + T L  A+      + 
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLF--LSRDSDVTLKNKEGE-TPLQCASLNSQVWSA 226

Query: 74  ETILSLSPD 82
             +     D
Sbjct: 227 LQMSKALQD 235

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 25/153 (16%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE----IDQSASNIANKDRKMTALHLAAGRGHA 70
           + +    G T +H AA Y N     +L+E    +          + + TALH+A    + 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAVINQNV 88

Query: 71  RTVETILS------------LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPL 116
             V  +L+            +       +   G + L +A      E +  L+E+  +  
Sbjct: 89  NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-- 146

Query: 117 ARSLINEGDAMENTPLHVLAAVRPKEFHAVMIK 149
               I   D++ NT LH+L     K F   M  
Sbjct: 147 ----IRAQDSLGNTVLHILILQPNKTFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 17/131 (12%)

Query: 21  YGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILS- 78
              +P+  AA   +   ++ LL   +    +      + TALH+AA   +      ++  
Sbjct: 2   IWESPLLLAAKENDVQALSKLL-KFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEA 59

Query: 79  ---LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE---------NNPLARSLINEGDA 126
              L  +       +G   LH A+++  V  +  LL             +     +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 127 MENTPLHVLAA 137
               PL   AA
Sbjct: 120 YGEHPLS-FAA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                 YG  P+ +AA  G+  +V LL  I+  A     +     T LH+   + +    
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLL--IEHGADIRAQDSLGN-TVLHILILQPNKTFA 170

Query: 74  ETILSL---------SPDCYELVDNKGWNFLHYA 98
             + +L               + +N+G      A
Sbjct: 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGN----YGMVNLLLEID-----QSASNIANKDRKMTALHLAA 65
           I+  D  G T +H      N      M NLLL  D     +S   + N     T   LA 
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAG 205

Query: 66  GRGHARTVETILS 78
             G+    + ++ 
Sbjct: 206 VEGNIVMFQHLMQ 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
                  G TP+H AA  G+  MV LLL      +N    ++  +T LHL A  GH    
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + ++       +     G+  LH A     ++ +  LL++     + +N    +  +PLH
Sbjct: 295 DVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLH 349

Query: 134 VLAA 137
             AA
Sbjct: 350 -QAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                + G+TP+H AA YG   +  LL  +++ A  N A K+  +T LH+A    +   V
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELL--LERDAHPNAAGKN-GLTPLHVAVHHNNLDIV 195

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L             G+  LH A    +VE   +LL+         N       TPLH
Sbjct: 196 KLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG----GSANAESVQGVTPLH 250

Query: 134 VLAA 137
            LAA
Sbjct: 251 -LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 7e-16
 Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                  G TP+H AA  G+   V  L  +++ AS     K    T LH+AA  G  R  
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLAL--LEKEASQACMTKKGF-TPLHVAAKYGKVRVA 162

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E +L             G   LH A+    ++ +  LL          +       TPLH
Sbjct: 163 ELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTPLH 217

Query: 134 VLAA 137
            +AA
Sbjct: 218 -IAA 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +  T + G+TP+H A++YGN  +V  L  +   A  N   K    + LH AA +GH   V
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFL--LQHQADVNAKTKL-GYSPLHQAAQQGHTDIV 360

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
             +L       E V + G   L  A        +T++L+      S +   D    +   
Sbjct: 361 TLLLKNGASPNE-VSSDGTTPLAIA-KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

Query: 134 V 134
            
Sbjct: 419 T 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               ++ G TP+H  A  G+  + ++L  I      +   +    T LH+A+  G+ + V
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVL--IKHGVMVDATTRMGY-TPLHVASHYGNIKLV 327

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L    D        G++ LH A      + +T LL+N     +  NE  +   TPL 
Sbjct: 328 KFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLA 382

Query: 134 VLAA 137
            +A 
Sbjct: 383 -IAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.2 bits (186), Expect = 3e-15
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                + G TP+H A++ G+  +V  L  + + AS N++N   + T LH+AA  GH    
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNL--LQRGASPNVSNVKVE-TPLHMAARAGHTEVA 63

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L                 LH A        +  LLENN    +  N      +TPLH
Sbjct: 64  KYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENN----ANPNLATTAGHTPLH 118

Query: 134 VLAA 137
            +AA
Sbjct: 119 -IAA 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I  TD+ G+TP+ +AA +G   +V  L  +   A   +  K R  +AL LA  +G+   V
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFL--LQNGADPQLLGKGR-ESALSLACSKGYTDIV 85

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L    D     D  G   L YA+    V+ +  LLE+     +            + 
Sbjct: 86  KMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNSMD 140

Query: 134 VLAA 137
            LA 
Sbjct: 141 -LAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 8e-14
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
               +H  A  G    +     I+Q    N  +++   T L  AA  G    VE +L   
Sbjct: 3   NSLSVHQLAAQGEMLYLATR--IEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNG 59

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
            D  +L+     + L  A      + +  LL+        +NE D    TPL   A 
Sbjct: 60  ADP-QLLGKGRESALSLACSKGYTDIVKMLLDCG--VD--VNEYDWNGGTPLL-YAV 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           + E D  G TP+ YA +  +   V +LLE    A   I        ++ LA   G+    
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGY-NSMDLAVALGYRSVQ 151

Query: 74  ETILS 78
           + I S
Sbjct: 152 QVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK 57
                  G+  +  A   G   +  ++       S++    + 
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIE------SHLLKLLQN 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
               ++   + +H AA   ++GM+  +L   +   +I   DR  MTAL + A       V
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 74  ET----------ILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
            +          +        +    KG   LHYA     +  +   L     +    ++
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP-IVKYLVGEKGSN--KDK 308

Query: 124 GDAMENTPLHVLAA 137
            D    TP+  LAA
Sbjct: 309 QDEDGKTPIM-LAA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D    TP+  A       +V  L  +   A   I NK  + +ALH AA       +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYL--MKAGADPTIYNKSER-SALHQAAANRDFGMM 215

Query: 74  ETILSLSPDCYEL--VDNKGWNFLHYAMVSFRVEQLTN---LLEN----NPLARSLINEG 124
             +L+ +    ++  +D  G   L     +   +Q+ +   L+E     +    +  +  
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 125 DAMENTPLHVLAA 137
                T LH  AA
Sbjct: 276 KYKGRTALH-YAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLL--EIDQSASNIANKDRK----MTALHLAAGRGHAR 71
             ++  T +H+ A   +      L+  E  +  +  A+ +       T L LA      R
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 72  TVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
            V  ++    D   + +    + LH A  + R   +   + N+   +  I E D    T 
Sbjct: 181 LVAYLMKAGAD-PTIYNKSERSALHQA-AANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

Query: 132 LHVLAA 137
           L  + A
Sbjct: 239 LM-IVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
             E +      +H  A  G+Y +   +        NI +     T LH  A    A   E
Sbjct: 87  PTEPEPESPIKLHTEAA-GSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSE 142

Query: 75  TILSLSPDCY-------ELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGD 125
            ++                +D      L  A+++ R   +  L++   +          +
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD------PTIYN 196

Query: 126 AMENTPLHVLAA 137
             E + LH  AA
Sbjct: 197 KSERSALH-QAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
                  G T +HYAA   N  +V  L  + +  SN   +D    T + LAA  G    V
Sbjct: 272 KDSEKYKGRTALHYAAQVSNMPIVKYL--VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 329

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
             ++       E VD         A
Sbjct: 330 MYLIQQGAS-VEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 20/136 (14%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAG 66
            K+   E   Y   P       GN  + +         +N+             LH  A 
Sbjct: 50  IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNH------TNLQIPTEPEPESPIKLHTEA- 102

Query: 67  RGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL-----I 121
            G     E I   S +  +         LH+   +   E  +  L  +     +     +
Sbjct: 103 AGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAE-KSEDLIVHEAKECIAAGADV 159

Query: 122 NEGDAMENTPLHVLAA 137
           N  D  ENTPL  LA 
Sbjct: 160 NAMDCDENTPLM-LAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
             + D+ G TPI  AA  G   +V  L  I Q AS    +     TA  LA    H   V
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYL--IQQGASVEAVDATDH-TARQLAQANNHHNIV 362

Query: 74  ETILS 78
           +    
Sbjct: 363 DIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 30/134 (22%)

Query: 9   EEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG 68
           EEK +   ++       +  A+Y G        L+              +       G G
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNG 72

Query: 69  HARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENN-PLARSLINEG-DA 126
           +    +   +         + +    LH                 +  +   +  E  + 
Sbjct: 73  NDFLGDFNHTNLQI-PTEPEPESPIKLHTEA------------AGSYAITEPITRESVNI 119

Query: 127 MEN----TPLHVLA 136
           ++     T LH +A
Sbjct: 120 IDPRHNRTVLHWIA 133

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 10/134 (7%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHL 63
           R  ++  +  + + D +G++P+H+A   G   +V +L  I + A  N+ N+    T LHL
Sbjct: 22  RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--IMRGARINVMNRGDD-TPLHL 78

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
           AA  GH   V+ +L    D    V+  G   LHYA    + +   +L+ N     +L++ 
Sbjct: 79  AASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSI 133

Query: 124 GDAMENTPLHVLAA 137
            +     P+   A 
Sbjct: 134 CNKYGEMPVD-KAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.3 bits (176), Expect = 5e-15
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
               I      GN   V L   +D + +++   D    + LH A   G +  VE ++   
Sbjct: 5   FMDDIFTQCREGNAVAVRLW--LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
                 ++      LH A      + +  LL+   +      IN  +   N PLH  A 
Sbjct: 63  ARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKAD------INAVNEHGNVPLH-YAC 113

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I   +++G  P+HYA ++G   +   L  +   A  +I NK  +   +  A         
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDL--VANGALVSICNKYGE-MPVDKAKAPLRELLR 154

Query: 74  ETILS 78
           E    
Sbjct: 155 ERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 8/57 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHAR 71
           +   ++YG  P+  A       +               N +R          +G  R
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAE------KMGQNLNR--IPYKDTFWKGTTR 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D+ G T +++A + G+  +V +L        N  NK    TALH AA +G+A  V+
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYADIVQ 157

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
            +L+      +L + +       A  +     L      +    ++    +A +      
Sbjct: 158 LLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTD----AVRTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 9/128 (7%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGH 69
               + E  +    P+H AA  GN   +     +D     N  +K    TAL+ A   GH
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGS-TALYWACHGGH 118

Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN 129
              VE + +         +  G   LH A      + +  LL     AR   +  +  + 
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG--AR--TDLRNIEKK 174

Query: 130 TPLHVLAA 137
                +A 
Sbjct: 175 LAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           + + ++ G T +H AA+ G   +V LL  + + A  ++ N ++K  A  +A     A  +
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLL--LAKGARTDLRNIEKK-LAFDMATNAACASLL 189

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           +           L + + +     +
Sbjct: 190 KKKQGTDAVR-TLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI 76
           +  + G   +  A Y       + L    +    I   D   T       +G    + + 
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
                           N LH A     +  L   L+N    R  +N  D   +T L+  A
Sbjct: 65  YV------AEQAESIDNPLHEAAKRGNLSWLRECLDN----RVGVNGLDKAGSTALY-WA 113

Query: 137 A 137
            
Sbjct: 114 C 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 12/123 (9%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           I        T        G          +  S       +     LH AA RG+   + 
Sbjct: 38  IIYITDMSDTNWWKGTSKGR-------TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLR 90

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
             L         +D  G   L++A      + +  +L   P     +N+ + + +T LH 
Sbjct: 91  ECLDNRVG-VNGLDKAGSTALYWA-CHGGHKDIVEMLFTQPNIE--LNQQNKLGDTALH- 145

Query: 135 LAA 137
            AA
Sbjct: 146 AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 2/55 (3%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
               +         A       ++      D +   ++N +        +    H
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAE-DYLDDEDSDLEHH 218

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 73.2 bits (181), Expect = 6e-16
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETI 76
           TD  G +P+H AA YG++    +L  +    S +   K  + T LH+AA  GHA  VE +
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVL--LRAGVSRDARTKVDR-TPLHMAASEGHANIVEVL 86

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHV 134
           L    D     D      LH+A      E +  L++   +      ++       T    
Sbjct: 87  LKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFD- 138

Query: 135 LAA 137
           ++ 
Sbjct: 139 ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 6e-15
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                +   TP+H AA  G+  +V +L  +   A  N  +   KMTALH A    H   V
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVL--LKHGADVNAKDML-KMTALHWATEHNHQEVV 116

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           E ++    D +             +
Sbjct: 117 ELLIKYGADVHT-QSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
               +  AA  G    V +L  +   A      D    + LHLAA  GH  T E +L   
Sbjct: 2   LGKKLLEAARAGQDDEVRIL--MANGA-PF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
                         LH A        +  LL++  +      +N  D ++ T LH  A 
Sbjct: 58  VSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGAD------VNAKDMLKMTALH-WAT 108

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.7 bits (146), Expect = 4e-11
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D    T +H+A  + +  +V LL  I   A  +  +K  K TA  ++   G+    
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELL--IKYGADVHTQSKFCK-TAFDISIDNGNEDLA 149

Query: 74  E 74
           E
Sbjct: 150 E 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 4/27 (14%), Positives = 10/27 (37%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLL 41
           +    ++  T    +   GN  +  +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
             + D  G T ++YA   GN   V L   + ++       K    T+ + A        V
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLF--VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 145

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
              LS  P  ++       + +H  + +  V+ +  LL+         N  +++   P  
Sbjct: 146 SYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM--TS--TNTNNSLLFIPDI 199

Query: 134 VLAA 137
            LA 
Sbjct: 200 KLAI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRGHART 72
             + D +G +  +YA    N  +V  LL      +  A K+       LH AA     + 
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLL------NAGALKNLLENEFPLHQAATLEDTKI 77

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-ENTP 131
           V+ +L    D  +  D+KG   L+YA+ S  ++ +   ++ N      +         T 
Sbjct: 78  VKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKN----WRLMFYGKTGWKTS 132

Query: 132 LHVLAA 137
            +  A 
Sbjct: 133 FY-HAV 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 6e-12
 Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 15/120 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                    + IH     G+  M+ LL  +D   S N  N    +  + LA        +
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILL--LDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +     +    + +         ++    E    ++E +             ++  + 
Sbjct: 212 QALFKYDIN----IYSA----NLENVLLDDAEIAKMIIEKH--VE--YKSDSYTKDLDIV 259

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHL 63
           ++ + +   ++ + D+ G+TP+ +A+ +G    V  L  ++  A  +I  K+R  +AL L
Sbjct: 19  KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--LEWGADPHILAKER-ESALSL 75

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
           A+  G+   V  +L    D   + D  G   L YA+    V+ +  LL     A   +  
Sbjct: 76  ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARG--AD--LTT 130

Query: 124 GDAMENTPLHVLAA 137
                 TP+  LA 
Sbjct: 131 EADSGYTPMD-LAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 8e-14
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP 81
               IH  A  G    +   L    +  N  ++    T L  A+  G   TV  +L    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLEWGA 60

Query: 82  DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
           D   ++  +  + L  A      + +  LLE +      IN  D    TPL   A 
Sbjct: 61  DP-HILAKERESALSLASTGGYTDIVGLLLERD--VD--INIYDWNGGTPLL-YAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.7 bits (159), Expect = 8e-13
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I   D  G TP+ YA    +   V  L  + + A           T + LA   G+ +  
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEAL--LARGADLTTEADSG-YTPMDLAVALGYRKVQ 151

Query: 74  ETILSLSPDCYELVDNKGW 92
           + I +         +    
Sbjct: 152 QVIENHILKL-FQSNLVPA 169

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 8e-16
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETIL 77
            + G TP+H AA  G+   V  L  + + A  N  +KD   T LHLAA  GHA  V+ +L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKL--LSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLH 133
           +   D        G    H A  +   E +  L     +      +N      +   H
Sbjct: 63  AKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.7 bits (172), Expect = 4e-15
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +    + G TP+H AA  G+  +V LL  + + A  N  +KD   T  HLA   GH   V
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLL--LAKGADVNARSKDGN-TPEHLAKKNGHHEIV 91

Query: 74  ETILSLSPDCYELVDNKGWNFLHY 97
           + + +   D          +  H+
Sbjct: 92  KLLDAKGAD-VNARSWGSSHHHHH 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRGHART 72
           +   D+ G T + + A  G+   V LL   +  A ++ ++D +  +TALH+AAG      
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLL--AEAGA-DLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 73  VETILSLSPDCYELVDNKGWNFLHYA-------MVSF--------RVEQLTNLLENNPLA 117
           VE ++ L  D  E+ D +G   L  A                    +E++ N+LE     
Sbjct: 127 VEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185

Query: 118 RS---LINEGDAMENTPLHVLAA 137
            +    I E         +++  
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRW 208

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
             TP   AA   +   ++ LLE       +  +++ + TAL   AG G  + V  +    
Sbjct: 45  YETPWWTAARKADEQALSQLLE---DRDVDAVDENGR-TALLFVAGLGSDKCVRLLAEAG 100

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
            D        G   LH A    R E +  L+E    A   I   D    T L  LA 
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--AD--IEVEDERGLTALE-LAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 17/127 (13%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
           +   T   G          G+         I   A+++ ++    T    AA +   + +
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKADEQAL 61

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMEN-T 130
             +L    D    VD  G   L +       + +  L E   +      ++  D     T
Sbjct: 62  SQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGLT 113

Query: 131 PLHVLAA 137
            LH +AA
Sbjct: 114 ALH-MAA 119

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 7/87 (8%), Positives = 16/87 (18%), Gaps = 26/87 (29%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD------------------- 55
           I+  D+ G T +  A            ++       I  +                    
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQF---GRRIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 56  ----RKMTALHLAAGRGHARTVETILS 78
               +     +L   +           
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVKGV 220

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 4/55 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
           I E    G    +   +        +        +    KD +   L  A     
Sbjct: 192 IVEKRGKGKDVEYLVRWKDGGDCEWVKGV---HVAEDVAKDYE-DGLEYAVAESV 242

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAGRGHART 72
           +   D+ G T + + A  G+   V LL   +  A ++ ++D +  +TALH+AAG      
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLL--AEAGA-DLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           VE ++ L  D  E+ D +G   L  A    +     N ++ 
Sbjct: 126 VEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETIL 77
                TP   AA   +   ++ LLE       +  +++ + TAL   AG G  + V  + 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGR-TALLFVAGLGSDKCVRLLA 96

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
               D        G   LH A    R E +  L+E    A   I   D    T L  LA 
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--AD--IEVEDERGLTALE-LAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 19/133 (14%)

Query: 9   EEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG 68
           E  K +   T   G          G+         I   A+++ ++    T    AA + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKA 55

Query: 69  HARTVETILS-LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGD 125
             + +  +L     D    VD  G   L +       + +  L E   +      ++  D
Sbjct: 56  DEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRD 106

Query: 126 AMEN-TPLHVLAA 137
                T LH +AA
Sbjct: 107 MRGGLTALH-MAA 118

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D Y    I  A  YG Y     L  ++        +K+  +T LH AA       V
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCREL--VEAGYDVRQPDKE-NVTLLHWAAINNRIDLV 58

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA-------MVSFRVEQLTNLLENNPLARSLINEGDA 126
           +  +S      +L  +     LH+A       MV         L++    A    +  D 
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ-------LMKYG--AD--PSLIDG 107

Query: 127 MENTPLHVLAA 137
              + +H LAA
Sbjct: 108 EGCSCIH-LAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.5 bits (174), Expect = 3e-14
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHAR-T 72
               D  G + IH AA +G+  +V  L  I +    ++ +++  MT L  AA R H+   
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYL--IAKGQDVDMMDQN-GMTPLMWAAYRTHSVDP 158

Query: 73  VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
              +L+ +              LH+A+++     ++ LLE      + ++  +    + L
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG----ANVDAQNIKGESAL 214

Query: 133 HVLAA 137
             LA 
Sbjct: 215 D-LAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 15  IKETDQY-GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHART 72
           +   D+Y   T +H+A   GN  +++LL  ++  A+ +  N   + +AL LA  R +   
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLL--LEAGANVDAQNIKGE-SALDLAKQRKNVWM 225

Query: 73  VETILS 78
           +  +  
Sbjct: 226 INHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 6/43 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK 57
           +   +  G + +  A    N  M+N L E          K   
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEAR------QAKGYD 239

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 15/157 (9%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHA---RTV 73
            D++G TP+H+     N  +V  L  +   + N    D    + L  A    +     T 
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHL--VKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTF 183

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQ--------LTNLLENNPLARSLINEGD 125
           E +L     C  L D+     LH+ +++  +          L  L+      ++   +  
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243

Query: 126 AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
             E            K+     +       + +N ++
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.7 bits (165), Expect = 7e-13
 Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 14/167 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRK-MTALHLAAGRGHART 72
               D  G + +  A    N         + D     +  +D    T LH          
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216

Query: 73  VETILSLSPDC-----------YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI 121
                    D                               R + +   L+   +  +++
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI 168
           N  D+  +T L++ A +        ++    A+    NK  +     
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 4e-10
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 2   AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTA 60
                L      M+   D  G T ++ AA  GN  +V+ L  +D  A   IANK      
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL--LDYGADPFIANKSGL-RP 319

Query: 61  LHLAAG 66
           +   AG
Sbjct: 320 VDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.5 bits (141), Expect = 8e-10
 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 18/145 (12%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGN----------YGMVNLLLEIDQSASNIANKD 55
            L++     +   D    T +H+                Y  + +   + +    I +  
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 56  RKMTALHLAAGRGHARTVETILSLSPDCYELV---DNKGWNFLHYAMVSFRVEQLTNLLE 112
            +  +           ++   L L      ++   D+ G   L+ A     +  +  LL+
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

Query: 113 NNPLARSLINEGDAMENTPLHVLAA 137
               A       +     P+    A
Sbjct: 305 YG--AD--PFIANKSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 5/162 (3%)

Query: 1   DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTA 60
              + K +        E        +    +      +   L  D S  N          
Sbjct: 42  PLKIMKALPSPVVNDNEQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQ 100

Query: 61  LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL 120
            H++         +   +   +    VD  G   LH+      +E + +L+++   +   
Sbjct: 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SN-- 156

Query: 121 INEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
              GD M  + L                      Y  +   +
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 198

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I   +  G T +H A    N  MV  L  ++  A+ N  + +     LH AA  G+    
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFL--VENGANINQPDNE-GWIPLHAAASCGYLDIA 122

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           E ++S        V+++G   L  A           + E   L ++ +N           
Sbjct: 123 EYLISQGAHVGA-VNSEGDTPLDIAE-------EEAMEE---LLQNEVNRQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.5 bits (166), Expect = 6e-13
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                + G T +H AA  G   ++ LL  I      NI + D   T LH AA  G     
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGW-TPLHAAAHWGKEEAC 248

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
             ++    D  E V+  G      A     +  L  L +   L   L +E  
Sbjct: 249 RILVENLCDM-EAVNKVGQTAFDVA-DEDILGYLEELQKKQNL---LHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 7e-12
 Identities = 28/132 (21%), Positives = 38/132 (28%), Gaps = 27/132 (20%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +K  D           + G+   +     + +       K         A   G    V 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPP--VVKRK-KTKVKFDDGAVFLAACSSGDTEEVL 57

Query: 75  TILSLSPDCYELVDNKGWNFLHYA-------MVSFRVEQLTNLLEN--NPLARSLINEGD 125
            +L    D     +  G   LH A       MV F       L+EN  N      IN+ D
Sbjct: 58  RLLERGADI-NYANVDGLTALHQACIDDNVDMVKF-------LVENGAN------INQPD 103

Query: 126 AMENTPLHVLAA 137
                PLH  AA
Sbjct: 104 NEGWIPLHA-AA 114

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 13/151 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +                         L        N     +   TALH+AA +G+   +
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWL--NSGHI-NDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTP 131
           + ++    D   + D  GW  LH A    + E    L+EN  +      +   + +  T 
Sbjct: 216 KLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD------MEAVNKVGQTA 268

Query: 132 LHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
             V           +  K+   + +   K++
Sbjct: 269 FDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 71.2 bits (176), Expect = 4e-15
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 19/126 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           +   D  GWTP+H AA+ G+  +V +LL       N A+ +      MT L LAA  GH 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLL------KNGADVNAVDHAGMTPLRLAALFGHL 93

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAME 128
             VE +L    D     D +G   LH A +   +E +  LL+N  +      +N  D   
Sbjct: 94  EIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQDKFG 146

Query: 129 NTPLHV 134
            T   +
Sbjct: 147 KTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.5 bits (161), Expect = 5e-13
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
               +  AA  G    V +L  +   A  N  +     T LHLAA  GH   VE +L   
Sbjct: 14  LGKKLLEAARAGRDDEVRIL--MANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNG 70

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
            D    VD+ G   L  A +   +E +  LL+N  +      +N  D   +TPLH LAA
Sbjct: 71  ADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGAD------VNANDMEGHTPLH-LAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 61.6 bits (151), Expect = 1e-11
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D  G TP+H AA +G+  +V +L  +   A  N  +K  K TA  ++   G+    
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVL--LKNGADVNAQDKFGK-TAFDISIDNGNEDLA 162

Query: 74  ETILSLS 80
           E +  L+
Sbjct: 163 EILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 50  NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTN 109
           +  +       L  AA  G    V  +++   D     D  GW  LH A  +  +E +  
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 110 LLEN--NPLARSLINEGDAMENTPLHVLAA 137
           LL+N  +      +N  D    TPL  LAA
Sbjct: 66  LLKNGAD------VNAVDHAGMTPLR-LAA 88

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.7 bits (177), Expect = 4e-15
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 2   AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK---- 57
              + + +    +    D Y  TP+  A   G    ++ L+       N    + K    
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV------ENFDKLEDKDIEG 68

Query: 58  MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NP 115
            TAL  A         E +LS   +     D  G   L ++++    E    LLE+  N 
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFGYSEMSYFLLEHGAN- 126

Query: 116 LARSLINEGDAMENTPLHVLAA 137
                +N+ +    TPL  +A+
Sbjct: 127 -----VNDRNLEGETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           +++ D  G T + +A      G+   LL      S  +N + K     T L  +   G++
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLL------SKGSNVNTKDFSGKTPLMWSIIFGYS 114

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAME 128
                +L    +     + +G   L  A    R E +  LLE   +      I+  D   
Sbjct: 115 EMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD------ISARDLTG 167

Query: 129 NTPLHVLAA 137
            T     A 
Sbjct: 168 LTAEA-SAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           D+ G               ++ L        N  +   + T L +A   G    ++ ++ 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNR-TPLMVACMLGMENAIDKLVE 56

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLA 136
                 E  D +G   L +A+ + R+     LL    N      +N  D    TPL   +
Sbjct: 57  NFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSGKTPLM-WS 108

Query: 137 A 137
            
Sbjct: 109 I 109

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           + + +  G TP+  A+ YG   +V  LLE+    ++I+ +D   +TA   A   G    +
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELG---ADISARDLTGLTAEASARIFGRQEVI 183

Query: 74  ETILS 78
           +    
Sbjct: 184 KIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEI 44
           I   D  G T    A  +G   ++ +  E+
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.9 bits (175), Expect = 5e-15
 Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD-RKMTALHLAAGRGHARTVETIL 77
           +      +  AA  G+   V  L      + N  + + R+ T LH AAG      VE +L
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKL--CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVL 135
               D +   D  G   LH A      E    L+++         +N  D  + TPLH  
Sbjct: 63  QHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAV------VNVADLWKFTPLH-E 114

Query: 136 AA 137
           AA
Sbjct: 115 AA 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 19/126 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
            ++ +    TP+H+AA Y    +V  LL       + A+   K    +  LH A   GH 
Sbjct: 35  CRDIEGRQSTPLHFAAGYNRVSVVEYLL------QHGADVHAKDKGGLVPLHNACSYGHY 88

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAME 128
              E ++          D   +  LH A    + E    LL++  +        + +   
Sbjct: 89  EVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDG 141

Query: 129 NTPLHV 134
           NTPL +
Sbjct: 142 NTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D+ G  P+H A  YG+Y +  LL  +   A  N+A+  +  T LH AA +G     
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELL--VKHGAVVNVADLWKF-TPLHEAAAKGKYEIC 124

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           + +L    D  +  +  G   L   
Sbjct: 125 KLLLQHGADPTK-KNRDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.3 bits (145), Expect = 6e-11
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D + +TP+H AA  G Y +  LL  +   A     N+D   T L L    G     
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLL--LQHGADPTKKNRDGN-TPLDLVK-DGDTDIQ 156

Query: 74  ETILS 78
           + +  
Sbjct: 157 DLLRG 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.3 bits (181), Expect = 6e-15
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 11/124 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +        +P+H A   G+   V +L  +   A  N    D   T L  A   G    V
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKIL--LKHGAQVNGVTAD-WHTPLFNACVSGSWDCV 141

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
             +L          ++   + +H A     VE + +L+         I+   +   TPL+
Sbjct: 142 NLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYG----GNIDHKISHLGTPLY 195

Query: 134 VLAA 137
           + A 
Sbjct: 196 L-AC 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.3 bits (181), Expect = 6e-15
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +        TP+  A   G++  VNLL  +   A ++  +    + +H AA RGH   V 
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLL--LQHGA-SVQPESDLASPIHEAARRGHVECVN 174

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG-----DAMEN 129
           ++++   +  +   +     L+ A  + +              + L+  G        ++
Sbjct: 175 SLIAYGGNI-DHKISHLGTPLYLACENQQRA----------CVKKLLESGADVNQGKGQD 223

Query: 130 TPLHVLAA 137
           +PLH    
Sbjct: 224 SPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 15/124 (12%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVET 75
           + +    +PIH AA  G+   VN L  I    + +        T L+LA        V+ 
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSL--IAYGGNIDHKISHLG-TPLYLACENQQRACVKK 208

Query: 76  ILSLSPDCYELV--DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           +L    D    V       + LH  + +   E    L++      +     +A    P+ 
Sbjct: 209 LLESGAD----VNQGKGQDSPLHAVVRTASEELACLLMDFG----ADTQAKNAEGKRPVE 260

Query: 134 VLAA 137
            L  
Sbjct: 261 -LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 21/122 (17%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
            W+P+H AA +G+   +  L  I Q  + NI   D  ++ LH A   GH   V+ +L   
Sbjct: 59  DWSPMHEAAIHGHQLSLRNL--ISQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHG 115

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG-----DAMENTPLHVL 135
                 V       L  A VS   +              L+  G     ++   +P+H  
Sbjct: 116 AQVNG-VTADWHTPLFNACVSGSWD----------CVNLLLQHGASVQPESDLASPIH-E 163

Query: 136 AA 137
           AA
Sbjct: 164 AA 165

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.4 bits (158), Expect = 6e-12
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           I     +  TP++ A        V  L  ++  A ++ N+ +   + LH           
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKL--LESGA-DV-NQGKGQDSPLHAVVRTASEELA 238

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
             ++    D     + +G   +   
Sbjct: 239 CLLMDFGADTQA-KNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 12  KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHAR 71
               K+    G  P     + G       LL    S   + +     + +H AA  GH  
Sbjct: 23  SMDGKQGGMDGSKPAGPRDFPGI-----RLL----SNPLMGDAVSDWSPMHEAAIHGHQL 73

Query: 72  TVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
           ++  ++S       ++     + LH A +   +  +  LL++     + +N   A  +TP
Sbjct: 74  SLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHG----AQVNGVTADWHTP 128

Query: 132 LHVLAA 137
           L   A 
Sbjct: 129 LF-NAC 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 17  ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGH 69
              +   +P+H      +  +  LL  +D  A     N + K   + L      
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLL--MDFGADTQAKNAEGK-RPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 29  AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
            + + ++   + L  + + + ++A+ D K   +  +   G        L  +P    + D
Sbjct: 2   GSSHHHHHHSSGL--VPRGS-HMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL---MGD 55

Query: 89  NK-GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
               W+ +H A +      L NL+         +N   A   +PLH  A 
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG--WA--VNIITADHVSPLHE-AC 100

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 20/154 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
             + ++ G T +H A    NY +V+ L  I   A+ N  +     T LH AA        
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFL--ITAGANVNSPDSHGW-TPLHCAASCNDTVIC 103

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFR-----VEQLTNLLENNPLARSLINEGDAME 128
             ++      +    + G                    L ++ ++       +   ++  
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-------MGLMNSGA 156

Query: 129 NTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
              L   +     EF   +  +   +   + +  
Sbjct: 157 VYALWDYS----AEFGDELSFREGESVTVLRRDG 186

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 14/127 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--MTALHLAAG--RGHA 70
           +   D +GWTP+H AA   +  +   L  +   A  I         TA         G+A
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMAL--VQHGA-AIFATTLSDGATAFEKCDPYREGYA 136

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
                +  +      L+++     L      F  E      E        +   D  E T
Sbjct: 137 DCATYLADVEQSM-GLMNSGAVYALWDYSAEFGDELS--FREG---ESVTVLRRDGPEET 190

Query: 131 PLHVLAA 137
                AA
Sbjct: 191 DWW-WAA 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 34/175 (19%)

Query: 15  IKETDQYGWTPI---HYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHA 70
            ++  +    P+     AA  G   +V     + +    +  N++  +TALH A    + 
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQA--VKEMNDPSQPNEEG-ITALHNAICGANY 67

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENN--PLARSLINEG---- 124
             V+ +++   +     D+ GW  LH A               N   +  +L+  G    
Sbjct: 68  SIVDFLITAGANVNS-PDSHGWTPLHCAA------------SCNDTVICMALVQHGAAIF 114

Query: 125 ---DAMENTPLHVLAAVRPKEFHAVMIK---KTQANYDAVNKRNVSVRHIFSYGY 173
               +   T          +E +A         + +   +N   V     +S  +
Sbjct: 115 ATTLSDGATAFEK--CDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 17/106 (16%)

Query: 38  VNLLLEIDQSASNIANKDRK----MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWN 93
           +  +L   ++  +     R     +  L  AA  G    V+  +    D  +  + +G  
Sbjct: 1   MRSVLR--KAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGIT 56

Query: 94  FLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
            LH A+       +  L+    N      +N  D+   TPLH  AA
Sbjct: 57  ALHNAICGANYSIVDFLITAGAN------VNSPDSHGWTPLH-CAA 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               D  GWTP+H A  +G+  +V LL  +   A  N        + LH AA  GH   V
Sbjct: 36  PNVKDHAGWTPLHEACNHGHLKVVELL--LQHKALVNTTGYQN-DSPLHDAAKNGHVDIV 92

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           + +LS        V+  G   + Y 
Sbjct: 93  KLLLSYGASR-NAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 66.7 bits (164), Expect = 9e-14
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 16  KETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVE 74
             T+  G T +H A+  G+   V  L  +   +  N+ +     T LH A   GH + VE
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYL--LQNGSDPNVKDHAGW-TPLHEACNHGHLKVVE 60

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
            +L            +  + LH A  +  V+ +  LL     A    N  +     P+  
Sbjct: 61  LLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYG--AS--RNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.3 bits (150), Expect = 8e-12
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +  T     +P+H AA  G+  +V LLL     AS N  N       +           +
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASRNAVNIFGL-RPVDYTDDESMKSLL 125

Query: 74  ETILS 78
                
Sbjct: 126 LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 50  NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTN 109
           +     R  T LH+A+ +G   +VE +L    D   + D+ GW  LH A     ++ +  
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 110 LLENNPLARSLINEGDAMENTPLHVLAA 137
           LL++     +L+N      ++PLH  AA
Sbjct: 62  LLQHK----ALVNTTGYQNDSPLH-DAA 84

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               D+ G+  IH AA  G    +  L  ++  A  NI + +     LHLAA  GH R V
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTL--LEFQADVNIEDNEGN-LPLHLAAKEGHLRVV 119

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           E ++  +       ++KG      A
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.4 bits (166), Expect = 8e-14
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           +   + +G T +      GN  +   LL         AN D K       +H AA  G  
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLL------LRGANPDLKDRTGFAVIHDAARAGFL 83

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
            T++T+L    D   + DN+G   LH A     +  +  L+++   A + +   +   +T
Sbjct: 84  DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT--ASN-VGHRNHKGDT 139

Query: 131 PLHV 134
              +
Sbjct: 140 ACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.1 bits (160), Expect = 5e-13
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +   D  G  P+H AA  G+  +V  L  +  +ASN+ +++ K  TA  LA   G    V
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFL--VKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 74  ETILS 78
             + +
Sbjct: 154 SLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.4 bits (153), Expect = 5e-12
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 21/122 (17%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHARTVETIL 77
               +  AA  G+   +  LL       N  N + +     TAL +    G+      +L
Sbjct: 5   WGNELASAAARGDLEQLTSLL------QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVL 135
               +     D  G+  +H A  +  ++ L  LLE   +      +N  D   N PLH L
Sbjct: 58  LRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLH-L 109

Query: 136 AA 137
           AA
Sbjct: 110 AA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 21/90 (23%)

Query: 55  DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENN 114
           +     L  AA RG    + ++L  + +     +  G   L                  N
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK------------LGN 49

Query: 115 P-LARSLI------NEGDAMENTPLHVLAA 137
           P +AR L+      +  D      +H  AA
Sbjct: 50  PEIARRLLLRGANPDLKDRTGFAVIH-DAA 78

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
                + G TP   AA  G+  ++ L   + + A  N  +     TA   AA  G  + +
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLF--LSKGADVNECDFY-GFTAFMEAAVYGKVKAL 121

Query: 74  ETILS---------LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG 124
           + +            + +  E +   G   L  A     VE +  +L +   A   +N  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE-VLKILLDEMGAD--VNAC 178

Query: 125 DAMENTPLHVLAA 137
           D M    L   A 
Sbjct: 179 DNMGRNALI-HAL 190

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.4 bits (171), Expect = 1e-13
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
               +  A    +  +V  L  ++  A+ N   ++   T LH A        VE +L   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQL--LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
            D        G      A ++  V+ L   L       + +NE D    T     AA
Sbjct: 63  ADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKG----ADVNECDFYGFTAFM-EAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 6e-13
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)

Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRG 68
           + K+  +   + G T +  AA  G+  ++ +L  +D+  +++   D     AL  A    
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL--LDEMGADVNACDNMGRNALIHALLSS 193

Query: 69  HARTVETILSLSPDCYELV---------DNKGWNFLHYAMVSFRVEQLTNLLENNPLARS 119
               VE I  L      L+           +G   L  A+    +  +  LLE       
Sbjct: 194 DDSDVEAITHL------LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE---HI 244

Query: 120 LINEGDAMENTPLHVLAA 137
            IN+ D+   T L  LA 
Sbjct: 245 EINDTDSDGKTALL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.1 bits (165), Expect = 7e-13
 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 16  KETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVE 74
            + ++ GWTP+H A       +V LL  +   A   +  K+   T   LAA  G  + ++
Sbjct: 33  FQEEEGGWTPLHNAVQMSREDIVELL--LRHGADPVLRKKNGA-TPFLLAAIAGSVKLLK 89

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLAR----SLINEGDAME 128
             LS   D     D  G+     A V  +V+ L  L +   N   R              
Sbjct: 90  LFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 129 NTPLHVLAA 137
            T L   AA
Sbjct: 149 ATALM-DAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
           +    + G TP+  A    + G+V  L  ++Q    I + D    TAL LA      +  
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRL--LEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 74  ETILS 78
           E +  
Sbjct: 270 ELLCK 274

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D+ G TP+H AA  G+  +V LL  ++  A  N  +K+ + T LHLAA  GH   V
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGR-TPLHLAARNGHLEVV 84

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           + +L    D     D  G   LH A
Sbjct: 85  KLLLEAGADV-NAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.9 bits (157), Expect = 6e-13
 Identities = 42/119 (35%), Positives = 57/119 (47%), Gaps = 14/119 (11%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
           G TP+H AA  G+  +V LL  ++  A  N  +K+ + T LHLAA  GH   V+ +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 58

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
            D     D  G   LH A  +  +E +  LLE   +      +N  D    TPLH LAA
Sbjct: 59  ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 61.2 bits (150), Expect = 6e-12
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           +   D+ G TP+H AA  G+  +V LLLE        A+ + K     T LHLAA  GH 
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHL 114

Query: 71  RTVETILS 78
             V+ +L 
Sbjct: 115 EVVKLLLE 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.4 bits (166), Expect = 3e-14
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +  T + G  P+HYAA  G   ++  L  + + A  N  +K    T L  A   GH   V
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFL--LLKGADINAPDKHHI-TPLLSAVYEGHVSCV 89

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           + +LS   D   +    G       
Sbjct: 90  KLLLSKGADK-TVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.9 bits (149), Expect = 7e-12
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 19/120 (15%)

Query: 21  YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHARTVETI 76
                  +A   G+   V   +      +   + +R        LH AA  G    +E +
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYV------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 77  LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHV 134
           L    D     D      L  A+    V  +  LL    +               T    
Sbjct: 60  LLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           I   D++  TP+  A Y G+   V LLL         A+K  K    +TA      +   
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKG------ADKTVKGPDGLTAFEATDNQAIK 119

Query: 71  RTVE 74
             ++
Sbjct: 120 ALLQ 123

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.9 bits (167), Expect = 4e-14
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 12/125 (9%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           I          +  AA  G    V  LLE    A  N  N+      + +    G A+  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRF-GRRPIQVMM-MGSAQVA 60

Query: 74  ETILSLSPDCYELVDNKGWNF-LHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
           E +L    +     D       +H A     ++ L  L      AR  ++  DA    P+
Sbjct: 61  ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG--AR--LDVCDAWGRLPV 115

Query: 133 HVLAA 137
             LA 
Sbjct: 116 D-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 15  IKETDQYGWT-PIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHART 72
               D    T P+H AA  G    + +L      A  ++ +       + LA  +GH   
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVL--HRAGARLDVCDAW-GRLPVDLAEEQGHRDI 126

Query: 73  VETILS 78
              + +
Sbjct: 127 ARYLHA 132

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHL 63
           R+L+  +       +++G T +     +G+  +   L  + Q AS N+ +     + +H 
Sbjct: 19  RRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALEL--LKQGASPNVQDTSGT-SPVHD 74

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
           AA  G   T++ ++    D   + D  G   +H A+       + + L     A S ++ 
Sbjct: 75  AARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTA-VVSFL----AAESDLHR 128

Query: 124 GDAMENTPLHVLAA 137
            DA   TPL  LA 
Sbjct: 129 RDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHARTVETIL 77
               +  AA  G+   V  LL        + + D       TAL +    G       +L
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLH-----RELVHPDALNRFGKTALQVMM-FGSTAIALELL 55

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
                   + D  G + +H A  +  ++ L  L+E+     + +N  D     P+H LA 
Sbjct: 56  KQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHG----ADVNVPDGTGALPIH-LAV 109

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D  G  PIH A   G+  +V+ L    +S  +  +     T L LA  RG    V+
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGL-TPLELALQRGAQDLVD 150

Query: 75  TILS 78
            +  
Sbjct: 151 ILQG 154

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D+YG TP++ A  +G+  +V +L  +   A  N  +     T LHLAA  GH    
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVL--LKNGADVNAVDAIGF-TPLHLAAFIGHLEIA 96

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
           E +L    D     D  G      +
Sbjct: 97  EVLLKHGADVNA-QDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
               +  AA  G    V +L  +   A  N  ++    T L+LA   GH   VE +L   
Sbjct: 14  LGKKLLEAARAGQDDEVRIL--MANGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNG 70

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAA 137
            D    VD  G+  LH A     +E    LL++  +      +N  D    T    ++ 
Sbjct: 71  ADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAFD-ISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +   D  G+TP+H AA+ G+  +  +L  +   A  N  +K  K TA  ++ G G+    
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVL--LKHGADVNAQDKFGK-TAFDISIGNGNEDLA 129

Query: 74  ETILSLS 80
           E +  L+
Sbjct: 130 EILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 50  NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTN 109
           +  +       L  AA  G    V  +++   D     D  G   L+ A     +E +  
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEV 65

Query: 110 LLEN--NPLARSLINEGDAMENTPLHVLAA 137
           LL+N  +      +N  DA+  TPLH LAA
Sbjct: 66  LLKNGAD------VNAVDAIGFTPLH-LAA 88

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
           +  G   +            +    I      +      +  L  ++  G    V+ I+ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSER--IAHGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 79  LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLA 136
              D   L +++G   LH A+ +   E +  L++   N      +N  D+   TPLH  A
Sbjct: 59  EVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLH-CA 110

Query: 137 A 137
           A
Sbjct: 111 A 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 10/131 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               +  G T +H A   G+  +V  L  +    + N A+ D   T LH AA   + +  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFL--VQFGVNVNAADSDGW-TPLHCAASCNNVQVC 119

Query: 74  ETILSLSPDCYE--LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
           + ++      +     D +        M     +    L       +  +   +      
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ--EK--MGIMNKGVIYA 175

Query: 132 LHVLAAVRPKE 142
           L         E
Sbjct: 176 LWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 13/124 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK----MTALHLAAGRGHA 70
           +   D  GWTP+H AA   N  +   L  ++  A  +                    G+ 
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFL--VESGA-AVFAMTYSDMQTAADKCEEMEEGYT 152

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
           +  + +  +      +++      L         E    + E        I   +  +  
Sbjct: 153 QCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDE--LPMKEG---DCMTIIHREDEDEI 206

Query: 131 PLHV 134
               
Sbjct: 207 EWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
           +K         +  ++  G + +V  +  I +    ++ N +   TALH A   GH   V
Sbjct: 31  VKFNP-LPLALLLDSSLEGEFDLVQRI--IYEVDDPSLPNDEGI-TALHNAVCAGHTEIV 86

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA-------MVSFRVEQLTNLLENNPLARSLINEGDA 126
           + ++    +     D+ GW  LH A       +  F VE    +          +   D 
Sbjct: 87  KFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA--------MTYSDM 137

Query: 127 MENTPLHV 134
                   
Sbjct: 138 QTAADKCE 145

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 28/143 (19%)

Query: 11  KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGH 69
           KK   +    +G  P+  AA      +V  LL+     ++I+ +D    T LH       
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 70  ARTVETILSLS---------------PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENN 114
                T    S                   E+ + KG   L  A  S ++  L  +L+  
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR- 255

Query: 115 PLARSLINEGDAMENTPLHVLAA 137
                     +  E    H  AA
Sbjct: 256 ----------EIHEPECRH-AAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 35/153 (22%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE------------IDQSASNIANKDRKMTALH 62
             ++   G T +H A    N  +V LL+E              +              L 
Sbjct: 94  YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS 153

Query: 63  LAAGRGHARTVETILS--LSPDCYELVDNKGWNFLHYA---------MVSFRVEQLTNLL 111
           LAA       V+ +L     P      D+ G   LH              F       +L
Sbjct: 154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213

Query: 112 ENNPLARSLINEGDAMEN-------TPLHVLAA 137
                  + ++    +E        TPL  LAA
Sbjct: 214 I----LGAKLHPTLKLEEITNRKGLTPLA-LAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRK-----MTALHLA--- 64
             K    Y    I  A    N   +  LL    +S   + + + K      T L  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 65  AGRGHARTVETILSLSPDC----------YELVDNKGWNFLHYAMVSFRVEQLTNLLEN- 113
              G   T+  +L ++             Y     KG   LH A+    +  +T L+EN 
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 114 ---------NPLARSLINEGDAMENTPLHVLAA 137
                    +   ++    G      PL  LAA
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLS-LAA 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 8e-10
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
             +    K+ + T++ G TP+  AA  G  G++  +L+ +       ++       H AA
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------IHEP---ECRHAAA 267

Query: 66  GRGH 69
              H
Sbjct: 268 HHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 47  SASNIANKDRKMTALHLAAGRGHARTVETILS-LSPDCYELVD------NKGWNFLHYAM 99
           SA     +     ++  A  + + + +E++L  L      L D        G   L  AM
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 100 VSFR------VEQLTNLLENNPLARSLINEGDAMEN----TPLHVLAAVR 139
           ++        +  L ++       +  +N           T LH +A  R
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH-IAIER 111

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 3e-13
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
          G TP+H AA  G+  +V LL  ++  A  N  +K+ + T LHLAA  GH   V+ +L   
Sbjct: 2  GRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 58

Query: 81 PDCYELVDNKGWNFLHYA 98
           D     D  G   LH A
Sbjct: 59 ADV-NAKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.4 bits (148), Expect = 5e-12
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
          +   D+ G TP+H AA  G+  +V LL  ++  A  N  +K+ + T LHLAA  GH   V
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGR-TPLHLAARNGHLEVV 84

Query: 74 ETILS 78
          + +L 
Sbjct: 85 KLLLE 89

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 30/154 (19%)

Query: 13  KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHAR 71
           K       +G  P+  AA    + +V  LLE     +++   D    T LH         
Sbjct: 127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD-- 184

Query: 72  TVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
                           ++   + L   M    ++    L         L    +    TP
Sbjct: 185 ----------------NSPENSALVIHMYDGLLQMGARLCPTVQ----LEEISNHQGLTP 224

Query: 132 LHVLAAVRPKEFHAVMIK---KTQANYDAVNKRN 162
           L  LAA   KE    + +   + + +  A +  +
Sbjct: 225 LK-LAA---KEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 28/160 (17%)

Query: 4   LRKLVEEKKKM---IKETDQYGWTPIHYAAYYGNYG---MVNLLLEIDQSASNI-----A 52
           L  L    K +          G T +  A      G    +  LL+ID+ + N      A
Sbjct: 22  LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81

Query: 53  NKDRK----MTALHLAAGRGHARTVETILS------------LSPDCYELVDNKGWNFLH 96
               +     +ALH+A  +   + V+ ++                         G   L 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 97  YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
            A  + + + +   L  NP   + +   D++ NT LH L 
Sbjct: 142 LAACTKQWD-VVTYLLENPHQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%)

Query: 21  YGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRK----MTALHLAA---GRGHAR 71
           +    +      G    +  LLE     S     +   +     T L  A      G   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 72  TVETILSLSPDCYEL----------VDNKGWNFLHYAMVSFRVEQLTNLLEN-------- 113
            +  +L +  D                 +G + LH A+    ++ +  L+EN        
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 114 -NPLARSLINEGDAMENTPLHVLAA 137
                +            PL  LAA
Sbjct: 121 CGRFFQKHQGTCFYFGELPLS-LAA 144

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 64.8 bits (159), Expect = 7e-13
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTV 73
               + YG  PI      G+  +  LL  +   A  N A+       +H AA  G   T+
Sbjct: 38  PNAPNSYGRRPIQVMM-MGSARVAELL--LLHGAEPNCADPATLTRPVHDAAREGFLDTL 94

Query: 74  ETILSLSPDCYELVDNKGWNFLHYA 98
             +        ++ D  G   +  A
Sbjct: 95  VVLHRAGARL-DVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETIL 77
            +     +  AA  G    V  LLE    A+ N  N       + +    G AR  E +L
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSY-GRRPIQVMM-MGSARVAELLL 64

Query: 78  SL--SPDCYELVDNKGWNF-LHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
                P+C    D       +H A     ++ L  L      AR  ++  DA    P+  
Sbjct: 65  LHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAG--AR--LDVRDAWGRLPVD- 116

Query: 135 LAA 137
           LA 
Sbjct: 117 LAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D +G  P+  A   G+  +   L       +             + A  G +   +
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLR------AAAGGTRGS-NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 44  IDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV-SF 102
           ++ +A   ++ +     L  AA RG    V  +L    +     ++ G   +   M+ S 
Sbjct: 1   MEPAAG--SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMMGSA 57

Query: 103 RVEQLTNLLENNPLARSLINEGDAMENT-PLHVLAA 137
           RV +L  LL +     +  N  D    T P+H  AA
Sbjct: 58  RVAEL--LLLHG----AEPNCADPATLTRPVH-DAA 86

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 29/154 (18%), Positives = 43/154 (27%), Gaps = 37/154 (24%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE----IDQSASNIANKDRKM--------TALH 62
            ++    G T +H A        V LL+E    +   A     + +            L 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 63  LAAGRGHARTVETILSLSPDCYEL--VDNKGWNFLHYAMVSFRVEQLTNLLENNPLARS- 119
           LAA       V  +        +L   D++G   LH       V    N  EN       
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL-----VAIADNTRENTKFVTKM 200

Query: 120 --LINEGDAMEN--------------TPLHVLAA 137
             L+    A                 +PL  +AA
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 26/146 (17%)

Query: 19  DQYGWTPIHYAAYYGNYG---MVNLLLEIDQSA--------SNIANKDRK-MTALHLAAG 66
              G T +  A    + G    + +LL+I +          S   +   +  TALH+A  
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 67  RGHARTVETILS-------------LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
           R     VE ++                P         G   L  A  + +   + + L  
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH-IVHYLTE 161

Query: 114 NPLARSLINEGDAMENTPLHVLAAVR 139
           N   ++ +   D+  NT LH L A+ 
Sbjct: 162 NGHKQADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 21/98 (21%)

Query: 15  IKETDQYGWTPIHYAAYYGN---------YGMVNLLLEIDQ------SASNIANKDRKMT 59
           ++  D  G T +H      +           M +LLL          +   + N D   +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL-S 227

Query: 60  ALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY 97
            L +AA  G     + I+       E+ D    +  H+
Sbjct: 228 PLMMAAKTGKIGIFQHIIRR-----EIADAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 32/147 (21%)

Query: 21  YGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKM-----TALHLAA---GRGHA 70
           +    +      G+   +  LL   +      + +++ +      T L  A      G  
Sbjct: 4   FNRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRN 62

Query: 71  RTVETILSLSPDCYEL----------VDNKGWNFLHYAMVSFRVEQLTNLLEN------- 113
            T+  +L ++     +          V  +G   LH A+       +  L+E        
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 114 ---NPLARSLINEGDAMENTPLHVLAA 137
                               PL  LAA
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLS-LAA 148

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 8   VEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
           +     +    +  G +P+  AA  G  G+   ++ 
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEI--DQSASNIANKDRKMTALHL 63
            L+    +++K      +     AA  G+  ++N L E+   +  + I  ++    A  L
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY--HAFRL 169

Query: 64  AAGRGHARTVETILSLSPD-CYELVDNKGWNFLHYA 98
           AA  GH   +  +  L+P     ++  + +    +A
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 11/125 (8%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA-GRGHARTVETILSLS 80
            +     AA  G+  ++N L E+  + +    +     A   AA GRGH   +  +L   
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 81  PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG---------DAMENTP 131
                  +   + +    +  F    +  L E +   +    +G                
Sbjct: 223 VML-AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM 281

Query: 132 LHVLA 136
           L  L 
Sbjct: 282 LRNLI 286

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 5/63 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
                      +  A   GN G   LLL I   +     K       ++    G      
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSI--PSVLALTKA---NNYYINETGGRLDLRA 366

Query: 75  TIL 77
             L
Sbjct: 367 VAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 7/83 (8%)

Query: 16  KETDQYGWTPIHYAAYYGNYGMVNLL------LEIDQSASNIANKDRKMTALHLAAGRGH 69
           K     G+  +       +  +++ +        I   A            L LA   G+
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331

Query: 70  ARTVETILSLSPDCYELVDNKGW 92
                 +LS+ P    L     +
Sbjct: 332 QGACALLLSI-PSVLALTKANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 35/148 (23%)

Query: 12  KKMIKETDQYGWTPIHYAAY-YGNYGMVNLLLEIDQS--------------------ASN 50
            +         +    +AA   G++ ++N LL+                        A +
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 247

Query: 51  IANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM---VSFRVEQL 107
           +        A  L+   G    V           +    +G+  L   +       ++ +
Sbjct: 248 VNRLKEMHDAFKLSNPDGVFDLVT----------KSECLQGFYMLRNLIRRNDEVLLDDI 297

Query: 108 TNLLENNPLARSL-INEGDAMENTPLHV 134
             LL    +             N  L +
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRL 325

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLS 80
              +  AA  G    V +L  +   A     +K+   T LHLAA  GH   V+ +L   
Sbjct: 24 LGKKLLEAARAGQDDEVRIL--MANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEAG 80

Query: 81 PDCYELVDNKGWNFLHYA 98
           D     D  G      +
Sbjct: 81 ADVXA-QDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   D+ G TP+H AA  G+  +V LL  ++  A   A      TA  ++   G+    E
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLL--LEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 75  TI 76
            +
Sbjct: 108 IL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
           + + ++   + L  + + + ++ +       L  AA  G    V  +++   D     D
Sbjct: 1  GSSHHHHHHSSGL--VPRGS-HMGSDLG--KKLLEAARAGQDDEVRILMANGADV-AAKD 54

Query: 89 NKGWNFLHYA 98
            G   LH A
Sbjct: 55 KNGSTPLHLA 64

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 15/154 (9%), Positives = 36/154 (23%), Gaps = 22/154 (14%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK---MTALHLAAGRGHARTVETILS 78
            +  +  AA  G Y     L E  +   +  +  +       L         +    +++
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 79  LSPDCYELVDNKGWNFLHYAM------VSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
              D  +    +G              ++   E     LE    A   I          +
Sbjct: 64  KGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG--AD--ITALYKPYKIVV 118

Query: 133 HVLA------AVRPKEFHAVMIKKTQANYDAVNK 160
                            + ++  ++       +K
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 12/110 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE----IDQSASNIANKDRK-MTALHLAAGRGH 69
           IK   + G T        G   +          +++ A +I    +     +        
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA-DITALYKPYKIVVFKNIFNYF 126

Query: 70  ARTVETI-----LSLSPDC-YELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
               E I     +         + D  G   L +     +   L  + + 
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 23/130 (17%)

Query: 22  GWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGH------ARTVE 74
            +  +        Y +   L  I++ A      K+   T        G           +
Sbjct: 42  LYDVLRNNNDEARYKISMFL--INKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCK 98

Query: 75  TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL-------INEGDAM 127
             L    D    +       +   + ++ V++     E  PL + +       +   D  
Sbjct: 99  IFLEKGADI-TALYKPYKIVVFKNIFNYFVDEN----EMIPLYKLIFSQSGLQLLIKDKW 153

Query: 128 ENTPLHVLAA 137
             T L     
Sbjct: 154 GLTALE-FVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 10/90 (11%)

Query: 52  ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM----VSFRVEQL 107
           +N   +   +  AA  G       +     +  +       N L+  +       R +  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 108 TNLLENNPLARSLINEGDAMENTPLHVLAA 137
             L+     A   I        T    L  
Sbjct: 59  MFLINKG--AD--IKSRTKEGTTLFFPLFQ 84

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEI--DQSASNIANKDRKMTALHLAAGRGHART 72
           +      G T +HYAA Y     + LLL+        N A +    TAL +A  + H   
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE----TALDIARKKHHKEC 274

Query: 73  VETILSLSPDCYELVDN--KGWNFLH 96
            E +       +    +    W    
Sbjct: 275 EELLEQAQAGTFAFPLHVDYSWVIST 300

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
           + +    G T +HY     N   + LLL   +  ++I   +    T L +A    H    
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCE 254

Query: 74  ETILSLSPDCYELVDNKG--WNFL 95
           E +       +    +    W  L
Sbjct: 255 ELLTQALSGRFNSHVHVEYEWRLL 278

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLA 64
           R+   +K              +     +G        +++ +        +   TALHLA
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176

Query: 65  AGRGHARTVETI--LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
                  ++  +  L  +    +    KG   LHY  ++   E L  LL      ++ I 
Sbjct: 177 VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG----KASIE 232

Query: 123 EGDAMENTPLHV 134
             +    TPL +
Sbjct: 233 IANESGETPLDI 244

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
           + + D  G  P+H+A   G+ G+  L L+   D  A +   +      L +A    +A  
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR----DPLTIAMETANADI 316

Query: 73  VETILSLSPDCYELVDNKG 91
           V  +        E    + 
Sbjct: 317 VTLLRLAKMREAEAAQGQA 335

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 44/211 (20%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVN-----LLLEIDQSASNIANKDRKMTA 60
           +   + ++ + E        I         G++      + L++  S       D K+  
Sbjct: 135 QPYLKLRQALLELRPAKNVLID--------GVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 61  LHLAAGRGHARTVETILS-LSPDCYELVDNKGWNFLHYAMVSFRVEQ----LTNLLENNP 115
           L+L     +  + ET+L  L    Y++  N      H + +  R+      L  LL++ P
Sbjct: 187 LNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 116 LARSLINEGDAMENTPLHVLAAVR-PKEFHAVMIK-KTQANYDAVNKRNVSVRHIFS--- 170
               L+            VL  V+  K ++A  +  K       +  R   V    S   
Sbjct: 243 YENCLL------------VLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAAT 285

Query: 171 YGYPKLKEEIQKLSKDFGRGQYSNGVICKSE 201
             +  L      L+ D  +      + C+ +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.5e-33  Score=230.65  Aligned_cols=157  Identities=25%  Similarity=0.227  Sum_probs=145.0

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      ++|+.||+.|+.++|+.|+++|+++ +.+| .+|.||||+|+..++.++++.|++.++++ +.+|.+|+||||+|+.+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d-~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASD-SDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            4799999999999999999999998 8899 89999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHH
Q 045346          104 VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL  183 (352)
Q Consensus       104 ~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (352)
                      .+++++|++    .|+++|.+|.+|+||||+|++.|+.++++ +|.+.|++++.+|++|+||||+|+..++.   +++++
T Consensus        83 ~~~v~~Ll~----~gadvn~~d~~G~TpLh~A~~~g~~~~v~-~Ll~~gad~~~~d~~G~TpL~~A~~~g~~---~iv~~  154 (169)
T 4gpm_A           83 KEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGADVNTSDSDGRTPLDLAREHGNE---EVVKL  154 (169)
T ss_dssp             HHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHH
T ss_pred             HHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCccccCCCCCCHHHHHHHcCCH---HHHHH
Confidence            999999999    78999999999999999999999999994 55569999999999999999999999765   89999


Q ss_pred             HHHcCCCC
Q 045346          184 SKDFGRGQ  191 (352)
Q Consensus       184 l~~~g~~~  191 (352)
                      |.+.|+.-
T Consensus       155 Ll~~GA~i  162 (169)
T 4gpm_A          155 LEKQGGWL  162 (169)
T ss_dssp             HHTC----
T ss_pred             HHHCCCCc
Confidence            99998754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=250.84  Aligned_cols=173  Identities=24%  Similarity=0.224  Sum_probs=150.6

Q ss_pred             HHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccc
Q 045346            6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYE   85 (352)
Q Consensus         6 ~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~   85 (352)
                      ++|...|+++|.+|.+|+||||+|+..|+.+++++|++.++++ +.++ ..|.||+|+|+..++.++++.|++.++++ +
T Consensus        70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n  146 (269)
T 4b93_B           70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARN-ADQAVPLHLACQQGHFQVVKCLLDSNAKP-N  146 (269)
T ss_dssp             -----CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccC-CCCCCccccccccChHHHHHHHHHCCCCC-C
Confidence            3444589999999999999999999999999999999999998 8888 79999999999999999999999999998 8


Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcch
Q 045346           86 LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSV  165 (352)
Q Consensus        86 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tp  165 (352)
                      .+|..|+||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+.++++ +|.++|+|++.+|++|+||
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gadvn~~~~~g~t~Lh~A~~~g~~~~v~-~Ll~~Gad~~~~d~~G~Tp  221 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQ----HGASINASNNKGNTALHEAVIEKHVFVVE-LLLLHGASVQVLNKRQRTA  221 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHH-HHHHTTCCSCCCCTTSCCS
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCccccCCCcHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCCH
Confidence            899999999999999999999999999    78999999999999999999999999995 5556899999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHcC
Q 045346          166 RHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       166 l~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      ||+|+.++  ...++++.+.+.+
T Consensus       222 L~~A~~~~--~i~~lL~~l~~~~  242 (269)
T 4b93_B          222 VDCAEQNS--KIMELLQVVPSCV  242 (269)
T ss_dssp             GGGSCTTC--HHHHHTTC-----
T ss_pred             HHHHHhCC--cHHHHHHHHHHhc
Confidence            99998764  2334444444433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.3e-32  Score=233.16  Aligned_cols=177  Identities=15%  Similarity=0.186  Sum_probs=160.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.+++++...+.+++.+|.+|+||||+|++.|+.+++++|+++++++ +.++ ..|.||||+|+..|+.+++++|++.+.
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~   96 (201)
T 3hra_A           19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQN-SISDSPYLYAGAQGRTEILAYMLKHAT   96 (201)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            57889998888799999999999999999999999999999999998 8888 899999999999999999999996655


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhh-hhhccCCCCCCcHHHHHHhcCC-----hHHHHHHHhhcCccc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLAR-SLINEGDAMENTPLHVLAAVRP-----KEFHAVMIKKTQANY  155 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~-~~~n~~d~~G~T~Lh~A~~~~~-----~~~~~~lL~~~g~~~  155 (352)
                      ...+..|..|.||||+|+.+|+.+++++|++    .+ .+++.+|.+|+||||+|+..++     .+++ ++|.+.|+++
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v-~~Ll~~ga~~  171 (201)
T 3hra_A           97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV-KLLMENGADQ  171 (201)
T ss_dssp             CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH-HHHHHTTCCT
T ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH-HHHHHCCCCC
Confidence            4448899999999999999999999999999    56 7899999999999999999887     6777 5666789999


Q ss_pred             cccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          156 DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      +.+|.+|+||+|+|+..++.   +++++|.+.|
T Consensus       172 ~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~G  201 (201)
T 3hra_A          172 SIKDNSGRTAMDYANQKGYT---EISKILAQYN  201 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCH---HHHHHHHTCC
T ss_pred             CccCCCCCCHHHHHHHcCCH---hHHHHHHhcC
Confidence            99999999999999999766   8888888765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-32  Score=243.19  Aligned_cols=183  Identities=21%  Similarity=0.199  Sum_probs=162.0

Q ss_pred             HHHHHHHHhcccc---ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHh
Q 045346            2 AALRKLVEEKKKM---IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS   78 (352)
Q Consensus         2 e~v~~lL~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   78 (352)
                      ++++.|+. .+.+   ++.+|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|++
T Consensus        23 ~~v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~-~~g~tpL~~A~~~~~~~~v~~Ll~   99 (282)
T 1oy3_D           23 PFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAE-RGGHTALHLACRVRAHTCACVLLQ   99 (282)
T ss_dssp             HHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCC-TTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             HHHHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCcchhHhhhc
Confidence            56777776 4444   8899999999999999999999999999999998 8888 799999999999999999999999


Q ss_pred             hCCCc----------------------------------------------cccccCCCCchhHHHHhcCCHHHHHHHHh
Q 045346           79 LSPDC----------------------------------------------YELVDNKGWNFLHYAMVSFRVEQLTNLLE  112 (352)
Q Consensus        79 ~~~~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  112 (352)
                      ++++.                                              .+..|..|+||||+|+.+|+.+++++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  179 (282)
T 1oy3_D          100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD  179 (282)
T ss_dssp             SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            87652                                              25678899999999999999999999999


Q ss_pred             cCchhhhhhccCCCC-CCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          113 NNPLARSLINEGDAM-ENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       113 ~~~~~~~~~n~~d~~-G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                          .|.+++.+|.. |+||||+|+..|+.++++ +|.++|++++.+|.+|+||||+|+..++.   +++++|.+.|+.+
T Consensus       180 ----~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~-~Ll~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          180 ----AGADLNKPEPTCGRTPLHLAVEAQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNP---ILARLLRAHGAPE  251 (282)
T ss_dssp             ----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHTSSCH---HHHHHHHHTTCCC
T ss_pred             ----cCCCCCCCCCCCCcCHHHHHHHcCCHHHHH-HHHHcCCCCcccccCCCCHHHHHHHcCCc---HHHHHHHHcCCCc
Confidence                78899999865 999999999999999985 55568999999999999999999999665   8999999998877


Q ss_pred             CCcc
Q 045346          192 YSNG  195 (352)
Q Consensus       192 ~~~~  195 (352)
                      ....
T Consensus       252 ~~~~  255 (282)
T 1oy3_D          252 PEDG  255 (282)
T ss_dssp             CCCC
T ss_pred             CcCC
Confidence            6543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.4e-32  Score=233.99  Aligned_cols=182  Identities=24%  Similarity=0.278  Sum_probs=169.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.+++++...+..++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        20 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   97 (231)
T 3aji_A           20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKD-DAGWSPLHIAASAGXDEIVKALLVKGA   97 (231)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcC-CCCCCHHHHHHHcCHHHHHHHHHHcCC
Confidence            67899999888889999999999999999999999999999999888 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|.||||+|+..++.+++++|++    .+.+++.+|..|+||||+|+..|+.++++ +|.+.|++++.+|.+
T Consensus        98 ~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~  171 (231)
T 3aji_A           98 HV-NAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYDATAMHRAAAKGNLKMVH-ILLFYKASTNIQDTE  171 (231)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHH-HHHHTTCCSCCCCTT
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCCHHHHH-HHHhcCCCccccCCC
Confidence            98 8889999999999999999999999999    78889999999999999999999999985 555699999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |+||+|+|+..++.   +++++|.+.|.++...
T Consensus       172 g~t~L~~A~~~~~~---~~v~~Ll~~ga~~~~~  201 (231)
T 3aji_A          172 GNTPLHLACDEERV---EEAKFLVTQGASIYIE  201 (231)
T ss_dssp             SCCHHHHHHHTTCH---HHHHHHHHTTCCSCCC
T ss_pred             CCCHHHHHHHCCCH---HHHHHHHHCCCCCCCC
Confidence            99999999999765   8999999999877543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.1e-32  Score=237.35  Aligned_cols=181  Identities=20%  Similarity=0.160  Sum_probs=160.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCcc----ccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS----NIANKDRKMTALHLAAGRGHARTVETIL   77 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   77 (352)
                      ++++.|++..|.+++.+|..|+||||+|+..|+.+++++|++++++..    +.++ ..|.||||+|+..|+.+++++|+
T Consensus        17 ~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll   95 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL-YEGQTALHIAVINQNVNLVRALL   95 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC-CCCcCHHHHHHHcCCHHHHHHHH
Confidence            578888887799999999999999999999999999999999987753    3445 68999999999999999999999


Q ss_pred             hhCCCccccccC-------------CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHH
Q 045346           78 SLSPDCYELVDN-------------KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFH  144 (352)
Q Consensus        78 ~~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  144 (352)
                      ++++++ +..+.             +|+||||+|+..|+.+++++|++    .|.++|.+|.+|+||||+|+..++.+.+
T Consensus        96 ~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~~~~~~~  170 (232)
T 2rfa_A           96 ARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE----HGADIRAQDSLGNTVLHILILQPNKTFA  170 (232)
T ss_dssp             HTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred             hCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence            999988 55544             79999999999999999999999    7889999999999999999999998876


Q ss_pred             H---HHHhhcCccc------cccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          145 A---VMIKKTQANY------DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       145 ~---~lL~~~g~~~------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                      .   ++|.+.|++.      +.+|.+|+||+|+|+..++.   +++++|.++|..+
T Consensus       171 ~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~---~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI---VMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH---HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH---HHHHHHHhcCccc
Confidence            2   5666789887      68999999999999999766   8999999877544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.1e-31  Score=231.27  Aligned_cols=165  Identities=23%  Similarity=0.197  Sum_probs=102.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHH
Q 045346           19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA   98 (352)
Q Consensus        19 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (352)
                      |.+|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|++.++...+..|..|+||||+|
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   99 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA   99 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence            566666666666666666666666666655 5555 56666666666666666666666666533355666666666666


Q ss_pred             HhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHH
Q 045346           99 MVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKE  178 (352)
Q Consensus        99 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~  178 (352)
                      +..++.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|..|.||+|+|+..++.   
T Consensus       100 ~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---  171 (223)
T 2f8y_A          100 ARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAV-VLLKNGANKDMQNNREETPLFLAAREGSY---  171 (223)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTCCCHHHHHHHHTCH---
T ss_pred             HHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCcCHHHHHHHcCCH---
Confidence            66666666666666    45556666666666666666666666653 33345666666666666666666666443   


Q ss_pred             HHHHHHHHcCCCCCC
Q 045346          179 EIQKLSKDFGRGQYS  193 (352)
Q Consensus       179 ~i~~~l~~~g~~~~~  193 (352)
                      +++++|.+.|..+..
T Consensus       172 ~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          172 ETAKVLLDHFANRDI  186 (223)
T ss_dssp             HHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHcCCCCcc
Confidence            566666666555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.5e-32  Score=229.24  Aligned_cols=167  Identities=19%  Similarity=0.136  Sum_probs=154.1

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCC
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNK   90 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (352)
                      .+..+|.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +..|..
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  100 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFS  100 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTT
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-cccc-ccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCC
Confidence            34567899999999999999999999999999999887 7888 79999999999999999999999999998 888999


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHh
Q 045346           91 GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus        91 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      |+||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|+
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLE----HGANVNDRNLEGETPLIVASKYGRSEIVK-KLLELGADISARDLTGLTAEASAR  175 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHH-HHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999    78899999999999999999999999985 555689999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHcC
Q 045346          171 YGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       171 ~~~~~~~~~i~~~l~~~g  188 (352)
                      ..++.   +++++|.+.|
T Consensus       176 ~~~~~---~~v~~Ll~~~  190 (192)
T 2rfm_A          176 IFGRQ---EVIKIFTEVR  190 (192)
T ss_dssp             HTTCH---HHHHHHHHHH
T ss_pred             HhCcH---HHHHHHHhcc
Confidence            99766   8888887754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=6.3e-32  Score=223.13  Aligned_cols=147  Identities=26%  Similarity=0.333  Sum_probs=133.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+|+.||+ .|+++|.+|.+|+||||+|+..++.++++.|++++.++ +.+| .+|.||||+|+..|+.+++++|+++|+
T Consensus        18 ~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga   94 (169)
T 4gpm_A           18 DRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKD-SDGRTPLHHAAENGHKEVVKLLISKGA   94 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhc-cCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence            67777776 78999999999999999999999999999999999998 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDA  157 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~  157 (352)
                      ++ +.+|.+|+||||+|+++|+.+++++|++    .|++++.+|.+|+||||+|++.|+.+++ ++|.++|++++.
T Consensus        95 dv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~g~~~iv-~~Ll~~GA~ie~  164 (169)
T 4gpm_A           95 DV-NAKDSDGRTPLHHAAENGHKEVVKLLIS----KGADVNTSDSDGRTPLDLAREHGNEEVV-KLLEKQGGWLEH  164 (169)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHTC------
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHH-HHHHHCCCCcCC
Confidence            98 8899999999999999999999999999    7899999999999999999999999988 566779999874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=8e-32  Score=237.14  Aligned_cols=184  Identities=22%  Similarity=0.203  Sum_probs=154.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|+.......+..|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|++.++
T Consensus        37 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             ---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            46777777544434556999999999999999999999999999988 8888 899999999999999999999999998


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ...+..|..|+||||+|+..|+.+++++|++    .+.++|.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAV-VLLKNGANKDMQNNR  189 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTT
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCC
Confidence            4448899999999999999999999999999    78899999999999999999999999884 555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      |+||||+|+..++.   +++++|.+.|+.+....
T Consensus       190 g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          190 EETPLFLAAREGSY---ETAKVLLDHFANRDITD  220 (253)
T ss_dssp             SCCHHHHHHHHTCH---HHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHHHHHCCCH---HHHHHHHHcCCCccccc
Confidence            99999999999765   89999999988765543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=3.5e-31  Score=228.78  Aligned_cols=184  Identities=18%  Similarity=0.243  Sum_probs=163.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcC--CCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEID--QSASNIANKDRKMTALHLAAGRGHARTVETILSL   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   79 (352)
                      ++++.|++..+...+.+|..|+||||+|+..|+.+++++|++++  .+.....+ ..|.||||+|+..|+.++++.|+++
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC-TTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            67889998877777779999999999999999999999999998  55522266 7999999999999999999999999


Q ss_pred             C--CCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC-cccc
Q 045346           80 S--PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ-ANYD  156 (352)
Q Consensus        80 ~--~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g-~~~~  156 (352)
                      +  +++ +..|..|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..|+.++++.|+ +.| ++++
T Consensus        95 g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~  168 (228)
T 2dzn_A           95 PLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELLC-GLGKSAVN  168 (228)
T ss_dssp             SSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-TTTCCCSC
T ss_pred             CCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-hcCccccc
Confidence            8  776 7889999999999999999999999999    78899999999999999999999999995555 567 9999


Q ss_pred             ccccCCcchHHHHhhcCCCcHHHHHHHHH-HcCCCCCCcc
Q 045346          157 AVNKRNVSVRHIFSYGYPKLKEEIQKLSK-DFGRGQYSNG  195 (352)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~-~~g~~~~~~~  195 (352)
                      .+|.+|+||+|+|+..++.   +++++|. +.|.++....
T Consensus       169 ~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          169 WQDKQGWTPLFHALAEGHG---DAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCH---HHHHHHHHHHCCCSCCBC
T ss_pred             CcCCCCCCHHHHHHHcCCH---HHHHHHHHhcCCCCCccC
Confidence            9999999999999999765   8999998 7787765533

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=9.7e-32  Score=236.62  Aligned_cols=176  Identities=23%  Similarity=0.225  Sum_probs=160.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.+|..|+||||+|+..|+.+++++|++++....+.++ ..|.||||+|+..|+.++++.|++.++
T Consensus        71 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           71 DAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-TTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            56676666 7899999999999999999999999999999999885548888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|.+|+||||+|+..|+.+++++|++    .|.++|.+|.+|+||||+|++.|+.+++ ++|.++|++++.+|..
T Consensus       149 ~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~~~~~~~~v-~~Ll~~ga~~~~~d~~  222 (253)
T 1yyh_A          149 DV-NAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETA-KVLLDHFANRDITDHM  222 (253)
T ss_dssp             CT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTT
T ss_pred             CC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHCCCHHHH-HHHHHcCCCccccccC
Confidence            98 8899999999999999999999999999    7889999999999999999999999998 5666799999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      |+||+|+|+..++.   ++++++....
T Consensus       223 g~tpl~~A~~~g~~---~i~~~l~~~~  246 (253)
T 1yyh_A          223 DRLPRDIAQERMHH---DIVRLLDLEH  246 (253)
T ss_dssp             CCCHHHHHHHTTCH---HHHHHHHC--
T ss_pred             CCCHHHHHHHcCCH---HHHHHHHHHh
Confidence            99999999999776   8888877643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=1.6e-31  Score=231.43  Aligned_cols=176  Identities=22%  Similarity=0.242  Sum_probs=161.0

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        54 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  130 (231)
T 3aji_A           54 EIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVN-QNGCTPLHYAASKNRHEIAVMLLEGGA  130 (231)
T ss_dssp             HHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56677665 68889999999999999999999999999999999988 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|.||||+|+..|+.+++++|++    .+.++|.+|.+|+||||+|+..++.++++ +|.++|++++.+|.+
T Consensus       131 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~  204 (231)
T 3aji_A          131 NP-DAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACDEERVEEAK-FLVTQGASIYIENKE  204 (231)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCSCCCCTT
T ss_pred             CC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCccccCCCCCCHHHHHHHCCCHHHHH-HHHHCCCCCCCCCCC
Confidence            98 8889999999999999999999999999    78899999999999999999999999984 555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~  189 (352)
                      |+||+|+|...   ...++.++|.+.|+
T Consensus       205 g~t~l~~A~~~---~~~~i~~lL~~~~a  229 (231)
T 3aji_A          205 EKTPLQVAKGG---LGLILKRLAEGEEA  229 (231)
T ss_dssp             SCCHHHHSCHH---HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhh---HHHHHHHHHccccc
Confidence            99999999877   45588888887654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=6.2e-31  Score=229.01  Aligned_cols=181  Identities=21%  Similarity=0.169  Sum_probs=164.0

Q ss_pred             HHHHHHHH---hccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHh
Q 045346            2 AALRKLVE---EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS   78 (352)
Q Consensus         2 e~v~~lL~---~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   78 (352)
                      |+++.|++   ..+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.++++.|++
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALD-RHGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccC-CCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56777776   578899999999999999999999999999999999988 7888 799999999999999999999999


Q ss_pred             hCC----CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           79 LSP----DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        79 ~~~----~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      .++    ++ +..|..|+||||+|+..|+.+++++|++    .+.+++.+| ..|+||||+|+..|+.++++ +|.+.|+
T Consensus       101 ~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~  174 (241)
T 1k1a_A          101 SAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGA  174 (241)
T ss_dssp             HSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHH-HHHHTTC
T ss_pred             cCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcCCHHHHH-HHHHcCC
Confidence            987    55 7789999999999999999999999999    778899998 88999999999999999985 5556899


Q ss_pred             cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +++.+|.+|+||+|+|+..++.   +++++|.+.|.++..
T Consensus       175 ~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          175 NVNAQMYSGSSALHSASGRGLL---PLVRTLVRSGADSSL  211 (241)
T ss_dssp             CTTCBCTTSCBHHHHHHHHTCH---HHHHHHHHTTCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCCCC
Confidence            9999999999999999999765   899999998776543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1e-30  Score=227.29  Aligned_cols=182  Identities=24%  Similarity=0.186  Sum_probs=162.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ +|.+++..|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|++.++
T Consensus        25 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           25 DICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCC-TTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            56666665 68889999999999999999999999999999999887 7788 799999999999999999999999985


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ...+..|..|+||||+|+..++.+++++|++    .+.+++.+|.+|+||||+|+..|+.+++ ++|.+.|++++.+|..
T Consensus       102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~-~~Ll~~g~~~~~~~~~  176 (237)
T 3b7b_A          102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLS----KGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIH  176 (237)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHCCHHHH-HHHHTTTCCTTCCCTT
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHCCCHHHH-HHHHHcCCCCCCcCCC
Confidence            4448889999999999999999999999999    7788999999999999999999998888 4555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |+||+|+|+..++.   +++++|.+.|.++...
T Consensus       177 g~t~L~~A~~~~~~---~~v~~Ll~~gad~~~~  206 (237)
T 3b7b_A          177 GDSPLHIAARENRY---DCVVLFLSRDSDVTLK  206 (237)
T ss_dssp             CCCHHHHHHHTTCH---HHHHHHHTTTCCTTCC
T ss_pred             CCCHHHHHHHhCCH---hHHHHHHHcCCCCCcc
Confidence            99999999999655   8999999988776543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.3e-31  Score=230.77  Aligned_cols=180  Identities=22%  Similarity=0.242  Sum_probs=165.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++++...+.++ ..|.||||+|+..|+.++++.|+++++
T Consensus        39 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  116 (223)
T 2f8y_A           39 DAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHA  116 (223)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHHHHHHhCcHHHHHHHHHcCC
Confidence            56777776 6888999999999999999999999999999999885558888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +..|..|+||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|++.|+.+++ ++|.++|++++.+|..
T Consensus       117 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~ga~~~~~~~~  190 (223)
T 2f8y_A          117 DV-NAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETA-KVLLDHFANRDITDHM  190 (223)
T ss_dssp             CT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTT
T ss_pred             CC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCcCHHHHHHHcCCHHHH-HHHHHcCCCCcccccc
Confidence            98 8889999999999999999999999999    7889999999999999999999999998 4566689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      |+||+|+|+..++.   +++++|.+.|..+.
T Consensus       191 g~t~l~~A~~~~~~---~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          191 DRLPRDIAQERMHH---DIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCHHHHHHHTTCH---HHHHHHHHTTCSSC
T ss_pred             CCCHHHHHHHhcch---HHHHHHHHcCCCcc
Confidence            99999999999765   89999999887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=6e-31  Score=241.40  Aligned_cols=187  Identities=23%  Similarity=0.232  Sum_probs=149.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.+++++...+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        38 ~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~  115 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKD-KGGLVPLHNACSYGHYEVTELLLKHGA  115 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccC-CCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence            56778888778888888888999999999999999999999888887 7777 788899999999999999999998888


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCch---------------------------------------------
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL---------------------------------------------  116 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~---------------------------------------------  116 (352)
                      ++ +..|..|+||||+|+.+|+.+++++|++....                                             
T Consensus       116 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          116 CV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKV  194 (351)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHH
Confidence            87 77888888999999888888888888874210                                             


Q ss_pred             -----------------------------------------hhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccc
Q 045346          117 -----------------------------------------ARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANY  155 (352)
Q Consensus       117 -----------------------------------------~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~  155 (352)
                                                               .+.++|.+|.+|+||||+|++.|+.++++ +|.+.|+++
T Consensus       195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~  273 (351)
T 3utm_A          195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKM  273 (351)
T ss_dssp             HHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH-HHHHTTCCT
T ss_pred             HHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCC
Confidence                                                     23456777788888888888888877774 445678888


Q ss_pred             cccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          156 DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      +.+|..|+||||+|+..++.   +++++|.+.|+++....
T Consensus       274 n~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~~~~~  310 (351)
T 3utm_A          274 NALDSLGQTALHRAALAGHL---QTCRLLLSYGSDPSIIS  310 (351)
T ss_dssp             TCCCTTSCCHHHHHHHHTCH---HHHHHHHHTTCCTTCCC
T ss_pred             CCcCCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCCCcC
Confidence            88888888888888887655   78888888877765433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.6e-31  Score=231.18  Aligned_cols=172  Identities=17%  Similarity=0.180  Sum_probs=157.8

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc-----ccc
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC-----YEL   86 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-----~~~   86 (352)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|.++ +.++ ..|.||||+|+..|+.+++++|++.+++.     .+.
T Consensus        35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  112 (236)
T 1ikn_D           35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  112 (236)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCC-TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc
Confidence            3478999999999999999999999999999999988 8888 89999999999999999999999998652     467


Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCC-CCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcch
Q 045346           87 VDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA-MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSV  165 (352)
Q Consensus        87 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tp  165 (352)
                      .|..|.||||+|+.+|+.+++++|++    .|.+++.+|. +|+||||+|+..|+.++++ +|.++|++++.+|..|+||
T Consensus       113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~tp  187 (236)
T 1ikn_D          113 TNYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSP  187 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH-HHHTTTCCSCCCCTTCCCG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCCcccCCCCCH
Confidence            78899999999999999999999999    7889999998 9999999999999999985 5556899999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          166 RHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       166 l~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +|+|+..++.   +++++|.+.|+.+..
T Consensus       188 l~~A~~~~~~---~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          188 YQLTWGRPST---RIQQQLGQLTLENLQ  212 (236)
T ss_dssp             GGGCTTSSCH---HHHHHHHTTSCGGGS
T ss_pred             HHHHHccCch---HHHHHHHHcchhhhh
Confidence            9999998665   999999999987764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.9e-31  Score=232.93  Aligned_cols=177  Identities=20%  Similarity=0.165  Sum_probs=152.8

Q ss_pred             HHhccccccc----cCCCCChHHHHHHHc---CCHHHHHHHhhcCCCccc----------cccCCCCCcHHHHHHhcCcH
Q 045346            8 VEEKKKMIKE----TDQYGWTPIHYAAYY---GNYGMVNLLLEIDQSASN----------IANKDRKMTALHLAAGRGHA   70 (352)
Q Consensus         8 L~~~~~~~~~----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~----------~~~~~~g~tpLh~A~~~g~~   70 (352)
                      +...+.+++.    +|..|+||||+|+..   |+.+++++|++++++...          .+| ..|.||||+|+..|+.
T Consensus        25 l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~  103 (256)
T 2etb_A           25 LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEF-YQGHSALHIAIEKRSL  103 (256)
T ss_dssp             HHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTT-TTTCCHHHHHHHTTCH
T ss_pred             HHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccccc-ccCCCHHHHHHHcCCH
Confidence            3357888998    899999999999999   999999999998776521          123 5799999999999999


Q ss_pred             HHHHHHHhhCCCccccccCC-------------CCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHh
Q 045346           71 RTVETILSLSPDCYELVDNK-------------GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA  137 (352)
Q Consensus        71 ~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (352)
                      +++++|+++++++ +.+|..             |+||||+|+..|+.+++++|++... .|.++|.+|.+|+||||+|+.
T Consensus       104 ~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          104 QCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH-QPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             HHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCcCccCCCCCCHHHHHHH
Confidence            9999999999998 667765             9999999999999999999998321 367899999999999999999


Q ss_pred             --cCChH-------HHHHHHhhcCccc-------cccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          138 --VRPKE-------FHAVMIKKTQANY-------DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       138 --~~~~~-------~~~~lL~~~g~~~-------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                        .++.+       ++ ++|.+.|+++       +.+|.+|+||+|+|+..++.   +++++|.++|..+
T Consensus       182 ~~~~~~~~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~g~~~  247 (256)
T 2etb_A          182 IADNSPENSALVIHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI---EIFRHILQREFSG  247 (256)
T ss_dssp             HCCSCHHHHHHHHHHH-HHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred             cccCCchhhHHHHHHH-HHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH---HHHHHHHhCCCCC
Confidence              66766       66 5666799999       99999999999999999766   8999998876543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.4e-30  Score=229.58  Aligned_cols=178  Identities=20%  Similarity=0.173  Sum_probs=151.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|++.++
T Consensus        73 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (285)
T 3d9h_A           73 LSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVT-ADWHTPLFNACVSGSWDCVNLLLQHGA  149 (285)
T ss_dssp             HHHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCHHHHHHHHHHCCC
Confidence            56666666 67889999999999999999999999999999998887 7788 789999999999999999999999988


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ + .+.+|.||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|++++. |..
T Consensus       150 ~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~-~~~  221 (285)
T 3d9h_A          150 SV-Q-PESDLASPIHEAARRGHVECVNSLIA----YGGNIDHKISHLGTPLYLACENQQRACVK-KLLESGADVNQ-GKG  221 (285)
T ss_dssp             CS-S-CSCTTSCHHHHHHHHTCHHHHHHHHH----TTCCTTCCBTTTBCHHHHHHHTTCHHHHH-HHHHTTCCTTC-CBT
T ss_pred             CC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCcHHHHH-HHHHCCCCCCC-CCC
Confidence            87 3 34558999999999999999999998    67888999999999999999999988885 44567999885 888


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      |.||||+|+..++.   +++++|.+.|.++..
T Consensus       222 g~t~L~~A~~~~~~---~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          222 QDSPLHAVVRTASE---ELACLLMDFGADTQA  250 (285)
T ss_dssp             TBCHHHHHHHTTCH---HHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHHcCCH---HHHHHHHHCCCCCCC
Confidence            99999999998655   888999888776544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=2.1e-30  Score=225.25  Aligned_cols=176  Identities=24%  Similarity=0.255  Sum_probs=156.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.+|..|.||||+|+..|+.+++++|++++....+..+ ..|.||||+|+..|+.+++++|+++++
T Consensus        58 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  135 (237)
T 3b7b_A           58 EAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIWATEYKHVDLVKLLLSKGS  135 (237)
T ss_dssp             HHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45666664 7888999999999999999999999999999999854448888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|.||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|++.++.+++ .+|.++|++++.+|++
T Consensus       136 ~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~gad~~~~d~~  209 (237)
T 3b7b_A          136 DI-NIRDNEENICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCV-VLFLSRDSDVTLKNKE  209 (237)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHCCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTCHHHH-HHHHTTTCCTTCCCTT
T ss_pred             CC-CccCCCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhCCHhHH-HHHHHcCCCCCccCCC
Confidence            98 8889999999999999999999999999    7889999999999999999999999998 5556689999999999


Q ss_pred             CcchHHHHhhcCCC-cHHHHHHHHH
Q 045346          162 NVSVRHIFSYGYPK-LKEEIQKLSK  185 (352)
Q Consensus       162 g~Tpl~~a~~~~~~-~~~~i~~~l~  185 (352)
                      |+||+|+|+..++. ...++++.+.
T Consensus       210 g~t~l~~A~~~~~~~~~~~l~~~l~  234 (237)
T 3b7b_A          210 GETPLQCASLNSQVWSALQMSKALQ  234 (237)
T ss_dssp             SCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999988754 3334444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.8e-30  Score=213.66  Aligned_cols=157  Identities=18%  Similarity=0.107  Sum_probs=145.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHh
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV  100 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (352)
                      .|.||||.|+..|+.++++.|++.+.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            5899999999999999999999999887 8888 89999999999999999999999999998 8889999999999999


Q ss_pred             cCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHH
Q 045346          101 SFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEI  180 (352)
Q Consensus       101 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i  180 (352)
                      +|+.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   ++
T Consensus        79 ~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~---~~  150 (167)
T 3v31_A           79 KGYTDIVKMLLD----CGVDVNEYDWNGGTPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVALGYR---SV  150 (167)
T ss_dssp             HTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCH---HH
T ss_pred             cCCHHHHHHHHH----CCCCCCcCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCcH---HH
Confidence            999999999999    78899999999999999999999999995 55568999999999999999999999766   77


Q ss_pred             HHHHHHcC
Q 045346          181 QKLSKDFG  188 (352)
Q Consensus       181 ~~~l~~~g  188 (352)
                      +++|.+.+
T Consensus       151 ~~~L~~~~  158 (167)
T 3v31_A          151 QQVIESHL  158 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.8e-30  Score=233.58  Aligned_cols=183  Identities=20%  Similarity=0.136  Sum_probs=156.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ .|.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        54 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~g~  130 (299)
T 1s70_B           54 EEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPD-NEGWIPLHAAASCGYLDIAEYLISQGA  130 (299)
T ss_dssp             HHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            56777776 67889999999999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCch-----------------------hhhhhccCCCCCCcHHHHHHhc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL-----------------------ARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-----------------------~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                      ++ +..|.+|.||||+|+..++.++++.++.....                       ........|..|.||||+|+..
T Consensus       131 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          131 HV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            98 78899999999999999999998887753110                       0011223567899999999999


Q ss_pred             CChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          139 RPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       139 ~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      |+.++++ +|.+.|++++.+|.+|.||||+|+..++.   +++++|.+.|+++.
T Consensus       210 g~~~~v~-~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~~  259 (299)
T 1s70_B          210 GYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKE---EACRILVENLCDME  259 (299)
T ss_dssp             TCHHHHH-HHHTTTCCTTCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTT
T ss_pred             CcHHHHH-HHHHcCCCCCCcCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCCC
Confidence            9999884 55568999999999999999999999766   89999998776543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.8e-30  Score=240.40  Aligned_cols=175  Identities=19%  Similarity=0.198  Sum_probs=97.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh--
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL--   79 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~--   79 (352)
                      ++++.|++ .|.+++.+|..|+||||+|+..|+.+++++|++++++. +.   .+|.||||+|+..|+.+++++|++.  
T Consensus        34 ~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~  108 (364)
T 3ljn_A           34 DEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SL---WHGQKPIHLAVMANKTDLVVALVEGAK  108 (364)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CC---BTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cc---cCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence            56777776 68889999999999999999999999999999988754 21   2344444444444444444444444  


Q ss_pred             --CCCcccc-----------------ccCCCCchhHHHHhcC--CHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc
Q 045346           80 --SPDCYEL-----------------VDNKGWNFLHYAMVSF--RVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        80 --~~~~~~~-----------------~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                        +.++ +.                 .|.+|.||||+|+..|  +.+++++|++    .|.++|.+|.+|+||||+|+..
T Consensus       109 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~  183 (364)
T 3ljn_A          109 ERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEF  183 (364)
T ss_dssp             HHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHc
Confidence              3333 22                 3444444444444444  4444444444    3444444444444444444444


Q ss_pred             CChHHHHHHHhhcCcc-----ccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          139 RPKEFHAVMIKKTQAN-----YDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       139 ~~~~~~~~lL~~~g~~-----~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      |+.++++ +|.+.|++     ++..|..|.||||+|+..++.   +++++|.+.|++
T Consensus       184 g~~~~v~-~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~gad  236 (364)
T 3ljn_A          184 RNREALD-LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE---DVAMRFVEMGID  236 (364)
T ss_dssp             TCHHHHH-HHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH---HHHHHHHTTTCC
T ss_pred             CCHHHHH-HHHhcccccccccccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCC
Confidence            4444442 22223433     444444444444444444332   444444444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=2.8e-30  Score=223.05  Aligned_cols=163  Identities=23%  Similarity=0.270  Sum_probs=148.2

Q ss_pred             HHHHHHHHhcc--ccccc-cCCCCChHHHHHHHcCCHHHHHHHhhcC--CCccccccCCCCCcHHHHHHhcCcHHHHHHH
Q 045346            2 AALRKLVEEKK--KMIKE-TDQYGWTPIHYAAYYGNYGMVNLLLEID--QSASNIANKDRKMTALHLAAGRGHARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~~~--~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   76 (352)
                      |+++.|++ .+  .+++. .|..|+||||+|+..|+.+++++|++++  .+. +.++ ..|.||||+|+..|+.+++++|
T Consensus        50 ~~v~~Ll~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~L  126 (228)
T 2dzn_A           50 EITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKIT-NQGVTCLHLAVGKKWFEVSQFL  126 (228)
T ss_dssp             HHHHHHHH-TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHh-ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCC-cCCCCHHHHHHHcCCHhHHHHH
Confidence            56777776 44  55666 8899999999999999999999999998  665 7777 7999999999999999999999


Q ss_pred             HhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhh-hhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccc
Q 045346           77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLAR-SLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANY  155 (352)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~-~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~  155 (352)
                      +++++++ +.+|..|+||||+|+..|+.+++++|++    .+ .++|.+|.+|+||||+|+..|+.++++.|+.+.|+++
T Consensus       127 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          127 IENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCG----LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             HHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             HHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh----cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            9999998 8899999999999999999999999999    66 8899999999999999999999999976665899999


Q ss_pred             cccccCCcchHHHHhhc
Q 045346          156 DAVNKRNVSVRHIFSYG  172 (352)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~  172 (352)
                      +.+|.+|+||+|+|...
T Consensus       202 ~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          202 DLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             CCBCTTSCBGGGGCSST
T ss_pred             CccCCCCCcHHHHHHHH
Confidence            99999999999999654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=232.66  Aligned_cols=166  Identities=18%  Similarity=0.193  Sum_probs=152.3

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHH-----hcCcHHHHHHHHhhCCCcccccc
Q 045346           14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA-----GRGHARTVETILSLSPDCYELVD   88 (352)
Q Consensus        14 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~d   88 (352)
                      .+|.+|.+|+||||+|+..|+.+++++|++.++...+..+ ..|.||||+|+     ..++.++++.|++.+.+. +..|
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~  180 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKAS  180 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccC
Confidence            4899999999999999999999999999999984448888 89999999999     668999999999999877 7789


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHH
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI  168 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~  168 (352)
                      ..|+||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+.++++.|+...|++++.+|.+|+||+|+
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~----~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~  256 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLA----CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV  256 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence            999999999999999999999999    7899999999999999999999999999666655899999999999999999


Q ss_pred             HhhcCCCcHHHHHHHHHHcC
Q 045346          169 FSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       169 a~~~~~~~~~~i~~~l~~~g  188 (352)
                      |+..++.   +++++|.+.+
T Consensus       257 A~~~g~~---~iv~~Ll~~~  273 (276)
T 4hbd_A          257 ALDAGQS---EIASMLYSRM  273 (276)
T ss_dssp             HHHHTCH---HHHHHHHHHC
T ss_pred             HHHcCCH---HHHHHHHhcc
Confidence            9999766   8888887754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.1e-30  Score=212.92  Aligned_cols=161  Identities=24%  Similarity=0.234  Sum_probs=145.8

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .....+.+|||.|++.|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   85 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAED-ASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLR   85 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHH
Confidence            44567889999999999999999999999988 8888 89999999999999999999999999998 888999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCc
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL  176 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~  176 (352)
                      +|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..++.+++ ++|.++|++++.+|..|+||+|+|+..++. 
T Consensus        86 ~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-  159 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLK----NGADVNANDMEGHTPLHLAAMFGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDNGNE-  159 (169)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHhCCH-
Confidence            9999999999999999    7889999999999999999999999998 455568999999999999999999999765 


Q ss_pred             HHHHHHHHHHcC
Q 045346          177 KEEIQKLSKDFG  188 (352)
Q Consensus       177 ~~~i~~~l~~~g  188 (352)
                        +++++|.+.|
T Consensus       160 --~~~~~L~~~G  169 (169)
T 2y1l_E          160 --DLAEILQKLN  169 (169)
T ss_dssp             --HHHHHHHTC-
T ss_pred             --HHHHHHHHcC
Confidence              8888887754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.6e-30  Score=226.43  Aligned_cols=175  Identities=19%  Similarity=0.133  Sum_probs=153.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCC----CccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQ----SASNIANKDRKMTALHLAAGRGHARTVETIL   77 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   77 (352)
                      |+++.|++ .|.+++.+|..|+||||+|+..|+.++++.|++++.    +. +..+ ..|.||||+|+..|+.+++++|+
T Consensus        60 ~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll  136 (241)
T 1k1a_A           60 SVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARN-YDGLTALHVAVNTECQETVQLLL  136 (241)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccC-cCCCcHHHHHHHcCCHHHHHHHH
Confidence            56666665 788999999999999999999999999999999887    44 6777 79999999999999999999999


Q ss_pred             hhCCCcccccc-CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccc
Q 045346           78 SLSPDCYELVD-NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYD  156 (352)
Q Consensus        78 ~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~  156 (352)
                      +.++++ +..+ ..|+||||+|+.+|+.+++++|++    .|.++|.+|.+|+||||+|+..|+.++++ +|.++|++++
T Consensus       137 ~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~  210 (241)
T 1k1a_A          137 ERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPLVR-TLVRSGADSS  210 (241)
T ss_dssp             HTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHHHH-HHHHTTCCTT
T ss_pred             HcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHH-HHHhcCCCCC
Confidence            999998 5566 889999999999999999999999    78899999999999999999999999985 5556999999


Q ss_pred             ccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          157 AVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      .+|.+|+||+|+|+..+   ..++++.+.+.+
T Consensus       211 ~~~~~g~tpl~~A~~~~---~~~i~~~l~~~~  239 (241)
T 1k1a_A          211 LKNCHNDTPLMVARSRR---VIDILRGKATRP  239 (241)
T ss_dssp             CCCTTSCCTTTTCSSHH---HHHHHTC-----
T ss_pred             CcCCCCCCHHHHHHhcC---cHHHHhhhccCC
Confidence            99999999999999874   447777666543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=4.6e-30  Score=235.21  Aligned_cols=187  Identities=19%  Similarity=0.175  Sum_probs=152.9

Q ss_pred             HHHHHHHHhccccccccCC-CCChHHHHHHHcCCHHHHHHHhhcCCCc--------------------------------
Q 045346            2 AALRKLVEEKKKMIKETDQ-YGWTPIHYAAYYGNYGMVNLLLEIDQSA--------------------------------   48 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--------------------------------   48 (352)
                      |+|+.||+ +|+++|.+|. .|+||||+|++.|+.+++++|+++|+++                                
T Consensus        39 ~~V~~LL~-~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (337)
T 4g8k_A           39 DLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD  117 (337)
T ss_dssp             HHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHH-CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch
Confidence            57788776 7899998876 5999999999999999999999988764                                


Q ss_pred             cccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcc---------ccccCCCCchhHHHHhcCCHHHHHHHHhcCc----
Q 045346           49 SNIANKDRKMTALHLAAGRGHARTVETILSLSPDCY---------ELVDNKGWNFLHYAMVSFRVEQLTNLLENNP----  115 (352)
Q Consensus        49 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~----  115 (352)
                      .+.+| ..|.||||+|+..|+.++++.|+++++++.         ...+..|.||||+|+++|+.+++++|++...    
T Consensus       118 ~~~~d-~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n  196 (337)
T 4g8k_A          118 VNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  196 (337)
T ss_dssp             TTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred             hhhhc-cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence            13455 689999999999999999999999988762         1235678999999999999999999985310    


Q ss_pred             ------------------------------hhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcch
Q 045346          116 ------------------------------LARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSV  165 (352)
Q Consensus       116 ------------------------------~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tp  165 (352)
                                                    ..|+++|.+|.+|+||||+|+..|+.+.+..|+...|++++.+|.+|+||
T Consensus       197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp  276 (337)
T 4g8k_A          197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  276 (337)
T ss_dssp             CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred             ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence                                          02456778888888899998888888888777776788888888899999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          166 RHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       166 l~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      ||+|+..++.   +++++|.+.|+++..
T Consensus       277 L~~A~~~g~~---~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          277 LLLAVELKLK---KIAELLCKRGASTDC  301 (337)
T ss_dssp             HHHHHHTTCH---HHHHHHHTTSCSSTT
T ss_pred             HHHHHHcCCH---HHHHHHHHCCCCCCC
Confidence            9999888665   888888888877643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=231.59  Aligned_cols=181  Identities=18%  Similarity=0.138  Sum_probs=136.2

Q ss_pred             HHHHHHHHhccc-------cccccCCCCChHHHHHHHcCCH-HHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHH
Q 045346            2 AALRKLVEEKKK-------MIKETDQYGWTPIHYAAYYGNY-GMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV   73 (352)
Q Consensus         2 e~v~~lL~~~~~-------~~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v   73 (352)
                      |+++.||+....       .++..|..|.||||+|+..++. .+++.|++.|.++ +.+| .+|+||||+|+..|+.+++
T Consensus        25 ~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d-~~G~TpLh~A~~~g~~~~v  102 (269)
T 4b93_B           25 EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTS-QDGSSPLHVAALHGRADLI  102 (269)
T ss_dssp             HHHHHHHTCC----------------------------------------CCCCT-TCCC-TTSCCHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHH
Confidence            577888764322       3577888999999999988875 5889999999998 8899 8999999999999999999


Q ss_pred             HHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      ++|++.++++ +..+.+|.||+|+|+..++.++++.|++    .|.++|.+|.+|+||||+|+..|+.++++ +|.+.|+
T Consensus       103 ~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~TpL~~A~~~g~~~~v~-~Ll~~ga  176 (269)
T 4b93_B          103 PLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGHHELVA-LLLQHGA  176 (269)
T ss_dssp             HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCGGGHH-HHHHTTC
T ss_pred             HHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCCHHHHH-HHHHCCC
Confidence            9999999998 8889999999999999999999999999    78899999999999999999999999995 5556899


Q ss_pred             cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      ++|.+|..|.||||+|+..++.   +++++|.+.|+++..
T Consensus       177 dvn~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          177 SINASNNKGNTALHEAVIEKHV---FVVELLLLHGASVQV  213 (269)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCH---HHHHHHHHTTCCSCC
T ss_pred             CCCccccCCCcHHHHHHHcCCH---HHHHHHHHCCCCCCC
Confidence            9999999999999999999766   899999998876654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-29  Score=226.10  Aligned_cols=180  Identities=17%  Similarity=0.091  Sum_probs=135.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.+|.+|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        53 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  129 (285)
T 1wdy_A           53 DIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECD-FYGFTAFMEAAVYGKVKALKFLYKRGA  129 (285)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccC-cccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence            45666665 67788888888888888888888888888888888877 7777 788888888888888888888888888


Q ss_pred             Cccccc----------cCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCC----hHHHHHH
Q 045346           82 DCYELV----------DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP----KEFHAVM  147 (352)
Q Consensus        82 ~~~~~~----------d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~----~~~~~~l  147 (352)
                      ++ +..          +..|.||||+|+..|+.+++++|++.   .+.+++.+|..|+||||+|+..++    .+++ ++
T Consensus       130 ~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~-~~  204 (285)
T 1wdy_A          130 NV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAIT-HL  204 (285)
T ss_dssp             CT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHH-HH
T ss_pred             Cc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHH-HH
Confidence            77 443          67788888888888888888888873   256677777777777777777776    4444 45


Q ss_pred             HhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHH-cCCCCC
Q 045346          148 IKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD-FGRGQY  192 (352)
Q Consensus       148 L~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~-~g~~~~  192 (352)
                      |.+.|++++.+|.+|+||||+|+..++.   +++++|.+ .|..+.
T Consensus       205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~g~~~~  247 (285)
T 1wdy_A          205 LLDHGADVNVRGERGKTPLILAVEKKHL---GLVQRLLEQEHIEIN  247 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCH---HHHHHHHHSSSCCTT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCH---HHHHHHHhccCCCcc
Confidence            5557777777777777777777777544   66776666 554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.6e-30  Score=213.57  Aligned_cols=161  Identities=23%  Similarity=0.197  Sum_probs=143.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      .|.+|.||||.|++.|+.++++.|++.+....+..+ ..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-cCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence            467889999999999999999999997665546777 78999999999999999999999999998 8899999999999


Q ss_pred             HHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcH
Q 045346           98 AMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLK  177 (352)
Q Consensus        98 A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~  177 (352)
                      |+..|+.+++++|++    .+.++|.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|.. ++.  
T Consensus        82 A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~--  153 (165)
T 3twr_A           82 ACSYGHYEVAELLVK----HGAVVNVADLWKFTPLHEAAAKGKYEICK-LLLQHGADPTKKNRDGNTPLDLVKD-GDT--  153 (165)
T ss_dssp             HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCTGGGSCT-TCH--
T ss_pred             HHHcCcHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCcccCCCCCChhHhHhc-CCh--
Confidence            999999999999999    78899999999999999999999999985 5556899999999999999999876 443  


Q ss_pred             HHHHHHHHHcCC
Q 045346          178 EEIQKLSKDFGR  189 (352)
Q Consensus       178 ~~i~~~l~~~g~  189 (352)
                       +++++|.+.|+
T Consensus       154 -~i~~~L~~~gA  164 (165)
T 3twr_A          154 -DIQDLLRGDAA  164 (165)
T ss_dssp             -HHHHHHHTC--
T ss_pred             -HHHHHHhhccc
Confidence             89999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.7e-30  Score=212.25  Aligned_cols=161  Identities=17%  Similarity=0.092  Sum_probs=146.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS  101 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (352)
                      +.||||.|+..|+.++++.|++.+....+.++ ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            57899999999999999999999988668888 89999999999999999999999999998 88899999999999999


Q ss_pred             CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHH
Q 045346          102 FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQ  181 (352)
Q Consensus       102 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (352)
                      |+.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++
T Consensus        80 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~---~~~  151 (172)
T 3v30_A           80 GYTDIVGLLLE----RDVDINIYDWNGGTPLLYAVRGNHVKCVE-ALLARGADLTTEADSGYTPMDLAVALGYR---KVQ  151 (172)
T ss_dssp             TCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCH---HHH
T ss_pred             CCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCccccCCCCCCHHHHHHHhCcH---HHH
Confidence            99999999999    78899999999999999999999999985 55568999999999999999999999765   888


Q ss_pred             HHHHHcCCCCC
Q 045346          182 KLSKDFGRGQY  192 (352)
Q Consensus       182 ~~l~~~g~~~~  192 (352)
                      ++|.+.|....
T Consensus       152 ~~L~~~~~~~~  162 (172)
T 3v30_A          152 QVIENHILKLF  162 (172)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHh
Confidence            88888765443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.1e-30  Score=211.01  Aligned_cols=159  Identities=22%  Similarity=0.213  Sum_probs=144.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 045346           20 QYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM   99 (352)
Q Consensus        20 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (352)
                      +...||||.|+..|+.++++.|++++.++ +.++ ..|.||||+|+. |+.+++++|+++++++ +.+|..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQN-GFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCC-TTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccC-ccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            35679999999999999999999999888 8888 899999999999 9999999999999998 888999999999999


Q ss_pred             hcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc-ccccccCCcchHHHHhhcCCCcHH
Q 045346          100 VSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN-YDAVNKRNVSVRHIFSYGYPKLKE  178 (352)
Q Consensus       100 ~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~-~~~~n~~g~Tpl~~a~~~~~~~~~  178 (352)
                      .+|+.+++++|++    .+.++|.+|.+|+||||+|++.|+.++++ +|.+.|++ ++.+|.+|+||+|+|+..++.   
T Consensus        79 ~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~---  150 (162)
T 1ihb_A           79 RAGFLDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEGHLRVVE-FLVKHTASNVGHRNHKGDTACDLARLYGRN---  150 (162)
T ss_dssp             HHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHHSCCCTTCCCTTSCCHHHHHHHTTCH---
T ss_pred             HcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHH-HHHHccCCCCCCcCCCCCcHHHHHHHcCCH---
Confidence            9999999999999    78899999999999999999999999995 45557887 699999999999999999765   


Q ss_pred             HHHHHHHHcCCC
Q 045346          179 EIQKLSKDFGRG  190 (352)
Q Consensus       179 ~i~~~l~~~g~~  190 (352)
                      +++++|.+.|++
T Consensus       151 ~~~~~Ll~~GAd  162 (162)
T 1ihb_A          151 EVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHhCCC
Confidence            899999998864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=4.4e-30  Score=228.74  Aligned_cols=174  Identities=22%  Similarity=0.233  Sum_probs=154.6

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCc--cccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCC
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSA--SNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGW   92 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~   92 (352)
                      ++.+|.+|+||||+|++.|+.+++++|++++.+.  .+.++ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~   79 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGH   79 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence            5788999999999999999999999999988773  37788 79999999999999999999999999998 88899999


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCch-------------------------------------------hhhhhccCCCCCC
Q 045346           93 NFLHYAMVSFRVEQLTNLLENNPL-------------------------------------------ARSLINEGDAMEN  129 (352)
Q Consensus        93 t~Lh~A~~~~~~~~v~~Ll~~~~~-------------------------------------------~~~~~n~~d~~G~  129 (352)
                      ||||+|+..|+.+++++|++....                                           .+.+++.+|.+|+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999985321                                           2345889999999


Q ss_pred             cHHHHHHhcCChHHHHHHHhhcCccccccccC-CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          130 TPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR-NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       130 T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~-g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      ||||+|+..|+.++++ +|.+.|++++.++.. |+||||+|+..++.   +++++|.+.|..+...
T Consensus       160 t~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~~~~  221 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAA---SVLELLLKAGADPTAR  221 (282)
T ss_dssp             CHHHHHHHTTCHHHHH-HHHHHTCCTTCCCTTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCcCHHHHHHHcCCH---HHHHHHHHcCCCCccc
Confidence            9999999999999985 555699999999865 99999999999765   8999999998877553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.5e-30  Score=231.46  Aligned_cols=185  Identities=21%  Similarity=0.183  Sum_probs=151.8

Q ss_pred             HHHHHHHH---hcccccc----ccCCCCChHHHHHHHc---CCHHHHHHHhhcCCCcc------cc----ccCCCCCcHH
Q 045346            2 AALRKLVE---EKKKMIK----ETDQYGWTPIHYAAYY---GNYGMVNLLLEIDQSAS------NI----ANKDRKMTAL   61 (352)
Q Consensus         2 e~v~~lL~---~~~~~~~----~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~------~~----~~~~~g~tpL   61 (352)
                      |+++.|++   ..+.+++    ..|..|+||||+|+..   |+.+++++|++++++..      +.    ++ ..|.|||
T Consensus        27 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d-~~g~tpL  105 (273)
T 2pnn_A           27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSY-YKGQTAL  105 (273)
T ss_dssp             STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTT-TTTCCHH
T ss_pred             HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccccc-CCCCCHH
Confidence            34555665   3555555    4588999999999987   99999999999876431      21    44 6899999


Q ss_pred             HHHHhcCcHHHHHHHHhhCCCccccccC--------------CCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCC
Q 045346           62 HLAAGRGHARTVETILSLSPDCYELVDN--------------KGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM  127 (352)
Q Consensus        62 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~  127 (352)
                      |+|+..|+.+++++|+++++++ +.++.              .|+||||+|+..|+.+++++|++... .|.++|.+|.+
T Consensus       106 ~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~gad~~~~d~~  183 (273)
T 2pnn_A          106 HIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-QPADISARDSV  183 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-CCCCceeeCCC
Confidence            9999999999999999999998 66676              79999999999999999999998321 25789999999


Q ss_pred             CCcHHHHHHhcCC---------hHHHHHHHhhcCcccc-------ccccCCcchHHHHhhcCCCcHHHHHHHHHHcCC-C
Q 045346          128 ENTPLHVLAAVRP---------KEFHAVMIKKTQANYD-------AVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGR-G  190 (352)
Q Consensus       128 G~T~Lh~A~~~~~---------~~~~~~lL~~~g~~~~-------~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~-~  190 (352)
                      |+||||+|+..++         .+++ ++|.+.|++++       .+|.+|+||||+|+..++.   +++++|.+.|+ +
T Consensus       184 g~tpLh~A~~~~~~~~~~~~~~~~~v-~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~---~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          184 GNTVLHALVEVADNTVDNTKFVTSMY-NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI---GVLAYILQREIHE  259 (273)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHTC-
T ss_pred             CCcHHHHHHHccCcchhHHHHHHHHH-HHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH---HHHHHHHHCCCCC
Confidence            9999999999887         4566 56667899996       5999999999999999766   99999999988 5


Q ss_pred             CCC
Q 045346          191 QYS  193 (352)
Q Consensus       191 ~~~  193 (352)
                      |..
T Consensus       260 p~~  262 (273)
T 2pnn_A          260 PEC  262 (273)
T ss_dssp             ---
T ss_pred             chh
Confidence            544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=237.88  Aligned_cols=166  Identities=17%  Similarity=0.138  Sum_probs=133.8

Q ss_pred             HHHHHHhccccccc-cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCc---HHHHHHHHhh
Q 045346            4 LRKLVEEKKKMIKE-TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH---ARTVETILSL   79 (352)
Q Consensus         4 v~~lL~~~~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~   79 (352)
                      +.+++...|.++|. +|.+|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+   .++++.|++.
T Consensus       112 ~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d-~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGD-NMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            44555668899999 8999999999999999999999999999998 8889 899999999999999   7888888888


Q ss_pred             CCCccccccCCCCchhHHHHh----cCCHHHHHHHHhcCch----------------hhh--------------------
Q 045346           80 SPDCYELVDNKGWNFLHYAMV----SFRVEQLTNLLENNPL----------------ARS--------------------  119 (352)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~~~~----------------~~~--------------------  119 (352)
                      +....+.+|.+|+||||+|+.    .|+.++++.|++....                .+.                    
T Consensus       190 ~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~  269 (327)
T 1sw6_A          190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK  269 (327)
T ss_dssp             HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred             hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHH
Confidence            743348899999999999999    8999999999874210                022                    


Q ss_pred             -----hhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhc
Q 045346          120 -----LINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYG  172 (352)
Q Consensus       120 -----~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~  172 (352)
                           ++|.+|.+|+||||+|++.|+.++++ +|.++|++++.+|++|+||||+|+..
T Consensus       270 ~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~-~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          270 WIIANMLNAQDSNGDTCLNIAARLGNISIVD-ALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHHHCCHHHHH-HHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHhCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCcccCCCCCCHHHHHHhc
Confidence                 46777777777777777777777774 44456777777777777777777654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.1e-29  Score=211.61  Aligned_cols=165  Identities=19%  Similarity=0.159  Sum_probs=148.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 045346           20 QYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM   99 (352)
Q Consensus        20 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (352)
                      .++.+|||.|+..|+.++++.|++.+....+.++ ..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            5688999999999999999999998666558888 89999999999999999999999999998 888999999999999


Q ss_pred             hcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHH
Q 045346          100 VSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEE  179 (352)
Q Consensus       100 ~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~  179 (352)
                      ..|+.+++++|++    .+.++|.+|.+|+||||+|+..++.++++ +|.++|++++.+|.+|+||+|+|...   ...+
T Consensus        81 ~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~  152 (179)
T 3f6q_A           81 SHGHRDIVQKLLQ----YKADINAVNEHGNVPLHYACFWGQDQVAE-DLVANGALVSICNKYGEMPVDKAKAP---LREL  152 (179)
T ss_dssp             HTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCSSBCCTTSCCGGGGSCHH---HHHH
T ss_pred             HcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCcchhccCCCCcHHHHHHH---HHHH
Confidence            9999999999999    78899999999999999999999999884 55568999999999999999999887   5569


Q ss_pred             HHHHHHHcCCCCCCc
Q 045346          180 IQKLSKDFGRGQYSN  194 (352)
Q Consensus       180 i~~~l~~~g~~~~~~  194 (352)
                      ++++|.+.|..+...
T Consensus       153 ~~~~L~~~g~~~~~~  167 (179)
T 3f6q_A          153 LRERAEKMGQNLNRI  167 (179)
T ss_dssp             HHHHHHHTTCCCSCB
T ss_pred             HHHHHHHhhcCcccC
Confidence            999999999887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.3e-30  Score=230.03  Aligned_cols=176  Identities=20%  Similarity=0.142  Sum_probs=149.2

Q ss_pred             hccccccccC----CCCChHHHHHH---HcCCHHHHHHHhhcCCCc----------cccccCCCCCcHHHHHHhcCcHHH
Q 045346           10 EKKKMIKETD----QYGWTPIHYAA---YYGNYGMVNLLLEIDQSA----------SNIANKDRKMTALHLAAGRGHART   72 (352)
Q Consensus        10 ~~~~~~~~~d----~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~----------~~~~~~~~g~tpLh~A~~~g~~~~   72 (352)
                      ..+.+++..+    ..|+||||+|+   +.|+.+++++|++.+++.          .+..| ..|.||||+|+..|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~  108 (260)
T 3jxi_A           30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY-YRGQTALHIAIERRCKHY  108 (260)
T ss_dssp             HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS-EESBCHHHHHHHTTCHHH
T ss_pred             hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc-cCCCCHHHHHHHcCCHHH
Confidence            4677787666    77999999999   779999999999987542          12333 489999999999999999


Q ss_pred             HHHHHhhCCCcccccc--------------CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc
Q 045346           73 VETILSLSPDCYELVD--------------NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        73 v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                      +++|+++|+++ +..|              ..|+||||+|+..|+.+++++|++... .|.++|.+|.+|+||||+|+..
T Consensus       109 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~ga~~~~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          109 VELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-KQADLRRQDSRGNTVLHALVAI  186 (260)
T ss_dssp             HHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCCcccCCCCCcHHHHHHHh
Confidence            99999999998 6666              689999999999999999999998321 2578999999999999999987


Q ss_pred             CC---------hHHHHHHHhhcCccc-------cccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          139 RP---------KEFHAVMIKKTQANY-------DAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       139 ~~---------~~~~~~lL~~~g~~~-------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      ++         .+++ ++|.+.|+++       +.+|.+|+||||+|+..++.   +++++|.++|..+.
T Consensus       187 ~~~~~~~~~~~~~~v-~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          187 ADNTRENTKFVTKMY-DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI---GIFQHIIRREIADA  252 (260)
T ss_dssp             CCSSHHHHHHHHHHH-HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHH-HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH---HHHHHHHHhCCCcc
Confidence            76         4555 5666799999       78999999999999999766   89999998775543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-29  Score=205.92  Aligned_cols=151  Identities=20%  Similarity=0.134  Sum_probs=138.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS  101 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (352)
                      +.||||.|++.|+.+++++|++++.+. + .+ ..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            468999999999999999999998876 3 46 78999999999999999999999999998 88899999999999999


Q ss_pred             CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHH
Q 045346          102 FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQ  181 (352)
Q Consensus       102 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (352)
                      |+.+++++|++    .+.++|.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++
T Consensus        78 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~---~i~  149 (153)
T 1awc_B           78 GHANIVEVLLK----HGADVNAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNE---DLA  149 (153)
T ss_dssp             TCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHH
T ss_pred             ChHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCccccCCCCCCHHHHHHHcCCH---HHH
Confidence            99999999999    78899999999999999999999999985 55568999999999999999999999766   666


Q ss_pred             HHH
Q 045346          182 KLS  184 (352)
Q Consensus       182 ~~l  184 (352)
                      ++|
T Consensus       150 ~~L  152 (153)
T 1awc_B          150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            655

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4.6e-30  Score=230.06  Aligned_cols=170  Identities=18%  Similarity=0.108  Sum_probs=128.1

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCC
Q 045346            3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPD   82 (352)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~   82 (352)
                      .++++|.++  +++.+|.+|+||||+|+..|+.+++++|++++.++ +.+   +|.||||+|+..|+.+++++|+++|++
T Consensus        14 ~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~   87 (285)
T 3kea_A           14 QLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGLD   87 (285)
T ss_dssp             HHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC---TTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred             HHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC---CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            456666654  47888888888888888888888888888887766 433   478888888888888888888888888


Q ss_pred             ccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCC-CcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           83 CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAME-NTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G-~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      + +.+|..|+||||+|+..|+.+++++|++    .|.+++.+|..| +||||+|+..|+.++++ +|.+.|++.... +.
T Consensus        88 ~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~-~~  160 (285)
T 3kea_A           88 D-SQFDDKGNTALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVS-YFLSEIPSTFDL-AI  160 (285)
T ss_dssp             T-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHH-HHHTTSCTTCCC-ST
T ss_pred             C-CCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHH-HHHhCCCccccc-cC
Confidence            7 6778888888888888888888888888    677788888888 68888888888777774 444456655222 26


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      |.||||+|+..++.   +++++|.+.|
T Consensus       161 g~t~L~~A~~~g~~---~~v~~Ll~~g  184 (285)
T 3kea_A          161 LLSCIHITIKNGHV---DMMILLLDYM  184 (285)
T ss_dssp             HHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred             CccHHHHHHHcChH---HHHHHHHHcC
Confidence            77777777777554   6666666644

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=7.9e-29  Score=220.49  Aligned_cols=184  Identities=21%  Similarity=0.206  Sum_probs=165.3

Q ss_pred             HHHHHHHHhcccccccc-CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346            2 AALRKLVEEKKKMIKET-DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      |+++.|++ .+.+++.. +..|+||||+|++.|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|++++
T Consensus        19 ~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           19 DLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRK-KNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHH-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccC-CCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            56777776 66778877 888999999999999999999999999988 7888 79999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccC----------CCCCCcHHHHHHhcCChHHHHHHHhh
Q 045346           81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG----------DAMENTPLHVLAAVRPKEFHAVMIKK  150 (352)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~----------d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (352)
                      +++ +..|..|+||||+|+.+|+.+++++|++    .+.+++.+          |..|.||||+|+..|+.+.++.++..
T Consensus        96 ~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A           96 ADV-NECDFYGFTAFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             CCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCC-CccCcccCCHHHHHHHhCCHHHHHHHHH----hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            998 8889999999999999999999999999    56667666          88899999999999999999777766


Q ss_pred             cCccccccccCCcchHHHHhhcCCC-cHHHHHHHHHHcCCCCCC
Q 045346          151 TQANYDAVNKRNVSVRHIFSYGYPK-LKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       151 ~g~~~~~~n~~g~Tpl~~a~~~~~~-~~~~i~~~l~~~g~~~~~  193 (352)
                      .|++++..|..|+||+|+|+..++. ...+++++|.+.|..+..
T Consensus       171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~  214 (285)
T 1wdy_A          171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC
Confidence            6999999999999999999998764 346899999998877654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-29  Score=209.43  Aligned_cols=156  Identities=21%  Similarity=0.299  Sum_probs=140.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.+++++...+..++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (172)
T 3v30_A           16 DQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILA-KERESALSLASTGGYTDIVGLLLERDV   93 (172)
T ss_dssp             HHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhc-ccCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            67889998877779999999999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..++.+++ ++|.++|++....|..
T Consensus        94 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~~-~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A           94 DI-NIYDWNGGTPLLYAVRGNHVKCVEALLA----RGADLTTEADSGYTPMDLAVALGYRKVQ-QVIENHILKLFQSNLV  167 (172)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHH-HHHHHHHHHHSCC---
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHhCcHHHH-HHHHHHHHHHhcccCC
Confidence            98 8899999999999999999999999999    7889999999999999999999999988 5666799999999999


Q ss_pred             Ccch
Q 045346          162 NVSV  165 (352)
Q Consensus       162 g~Tp  165 (352)
                      |.||
T Consensus       168 ~~~p  171 (172)
T 3v30_A          168 PADP  171 (172)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3.3e-29  Score=217.10  Aligned_cols=165  Identities=19%  Similarity=0.195  Sum_probs=145.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcc----ccccCCCCchh
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCY----ELVDNKGWNFL   95 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L   95 (352)
                      .|+||||+|++.|+.++++.|++. +.++ +.+| ..|.||||+|+..|+.+++++|++.++++.    +..|.+|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRG-AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999998 7776 8888 899999999999999999999999998763    44677999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCchhhhhhccCCC-------------CCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC
Q 045346           96 HYAMVSFRVEQLTNLLENNPLARSLINEGDA-------------MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN  162 (352)
Q Consensus        96 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~-------------~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g  162 (352)
                      |+|+.+|+.+++++|++    .+.+++.++.             +|+||||+|+..|+.++++ +|.++|++++.+|.+|
T Consensus        80 ~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~d~~g  154 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLA----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR-LLIEHGADIRAQDSLG  154 (232)
T ss_dssp             HHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHh----CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCC
Confidence            99999999999999999    6677777765             7999999999999999995 5556899999999999


Q ss_pred             cchHHHHhhcCCCcH-HHHHHHHHHcCCCCC
Q 045346          163 VSVRHIFSYGYPKLK-EEIQKLSKDFGRGQY  192 (352)
Q Consensus       163 ~Tpl~~a~~~~~~~~-~~i~~~l~~~g~~~~  192 (352)
                      +||||+|+..++.+. .+++++|.+.|..+.
T Consensus       155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          155 NTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            999999999987632 355699999888664

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=224.31  Aligned_cols=170  Identities=19%  Similarity=0.236  Sum_probs=152.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .+.+++.+|..|+||||+|+..|+.+++++|++++.++ +..  ..|.||||+|+..|+.+++++|++.++
T Consensus       106 ~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~  181 (285)
T 3d9h_A          106 SCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPE--SDLASPIHEAARRGHVECVNSLIAYGG  181 (285)
T ss_dssp             HHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCS--CTTSCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CCC--CCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            56666665 78999999999999999999999999999999999887 443  469999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|.+|+||||+|+.+|+.+++++|++    .+.++|. |..|+||||+|+..++.++++ +|.+.|++++.+|.+
T Consensus       182 ~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~-~~~g~t~L~~A~~~~~~~~v~-~Ll~~gad~~~~d~~  254 (285)
T 3d9h_A          182 NI-DHKISHLGTPLYLACENQQRACVKKLLE----SGADVNQ-GKGQDSPLHAVVRTASEELAC-LLMDFGADTQAKNAE  254 (285)
T ss_dssp             CT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTC-CBTTBCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTT
T ss_pred             CC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH----CCCCCCC-CCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCC
Confidence            98 8899999999999999999999999999    6778884 899999999999999999984 555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDF  187 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~  187 (352)
                      |+||+|+|+..     .+++++|.+.
T Consensus       255 g~t~l~~A~~~-----~~~~~~Ll~~  275 (285)
T 3d9h_A          255 GKRPVELVPPE-----SPLAQLFLER  275 (285)
T ss_dssp             SCCGGGGSCTT-----SHHHHHHHHH
T ss_pred             CCCHHHHhcCc-----cHHHHHHHHh
Confidence            99999999843     2678888776

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-29  Score=233.81  Aligned_cols=178  Identities=17%  Similarity=0.122  Sum_probs=151.2

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC---CCcc
Q 045346            8 VEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS---PDCY   84 (352)
Q Consensus         8 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~   84 (352)
                      +.+.|.++|.+|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|++.+   .++ 
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-  228 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDI-  228 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccC-CCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-
Confidence            34588899999999999999999999999999999999888 7888 78999999999999999999999877   566 


Q ss_pred             ccccCCCCchhHHHHhcC---CHHHHHHHHhcCchhhhhhcc--------CCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           85 ELVDNKGWNFLHYAMVSF---RVEQLTNLLENNPLARSLINE--------GDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~~~~~~~~~n~--------~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      +..|.+|+||||+|+..+   +.+++++|++    .+.+++.        +|..|+||||+|+..|+.++++.|+...|+
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  304 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVE----KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  304 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH----HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHH----CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC
Confidence            778889999999999887   7889999998    5566654        677899999999999998888766665569


Q ss_pred             cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      +++.+|.+|+||||+|+..++.   +++++|.+.|+.+....
T Consensus       305 ~~n~~d~~g~TpL~~A~~~g~~---~iv~~Ll~~gad~~~~d  343 (373)
T 2fo1_E          305 NKDKQDEDGKTPIMLAAQEGRI---EVVMYLIQQGASVEAVD  343 (373)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCH---HHHHHHHHTTCCSSCCC
T ss_pred             CccCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCccCCC
Confidence            9999999999999999988665   88888888887765443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=5.5e-29  Score=216.07  Aligned_cols=183  Identities=19%  Similarity=0.194  Sum_probs=162.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++++.+.....+ ..|.||||+|+..|+.+++++|++.++
T Consensus        23 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~v~~Ll~~g~  100 (240)
T 3eu9_A           23 ERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG-DLNSTPLHWATRQGHLSMVVQLMKYGA  100 (240)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC-CcCCChhHHHHHcCCHHHHHHHHHcCC
Confidence            56777776 7788999999999999999999999999999999998855555 679999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccccccc-
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK-  160 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~-  160 (352)
                      ++ +..|..|.||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..++...+..+|.+.|++++..+. 
T Consensus       101 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  175 (240)
T 3eu9_A          101 DP-SLIDGEGCSCIHLAAQFGHTSIVAYLIA----KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY  175 (240)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred             CC-cccCCCCCCHHHHHHHcCHHHHHHHHHh----cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence            98 7889999999999999999999999999    67889999999999999999777633334777789999999997 


Q ss_pred             CCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          161 RNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       161 ~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      .|.||||+|+..++.   +++++|.+.|..+...
T Consensus       176 ~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~  206 (240)
T 3eu9_A          176 HKNTALHWAVLAGNT---TVISLLLEAGANVDAQ  206 (240)
T ss_dssp             TCCCHHHHHHHHTCH---HHHHHHHHHTCCTTCB
T ss_pred             CCCcHHHHHHHcCCH---HHHHHHHHcCCCCCCc
Confidence            999999999999765   8999999988776543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-29  Score=238.37  Aligned_cols=179  Identities=25%  Similarity=0.272  Sum_probs=105.8

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCC
Q 045346            3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPD   82 (352)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~   82 (352)
                      +++.|+. ++.+++..+.+|+||||+|+..|+.++++.|++.+.+. +.++ ..|.||||+|+..|+.+++++|++++++
T Consensus       194 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  270 (437)
T 1n11_A          194 IVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAES-VQGVTPLHLAAQEGHAEMVALLLSKQAN  270 (437)
T ss_dssp             HHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence            3443333 45555666666666666666666666666666666555 5555 5566666666666666666666666665


Q ss_pred             ccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC
Q 045346           83 CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN  162 (352)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g  162 (352)
                      + +..|..|+||||+|+..|+.+++++|++    .+.++|.+|..|+||||+|+..|+.++++ +|.++|++++.+|..|
T Consensus       271 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~-~Ll~~gad~n~~~~~g  344 (437)
T 1n11_A          271 G-NLGNKSGLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLG  344 (437)
T ss_dssp             T-TCCCTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCCHHHHHHHSSCSHHHH-HHHHTTCCTTCCCTTS
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCCHHHHHHHcCcHHHHH-HHHhcCCCCCCCCCCC
Confidence            5 5556666666666666666666666665    45556666666666666666666655553 3334566666666666


Q ss_pred             cchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          163 VSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +||||+|+..++.   +++++|.+.|+.+..
T Consensus       345 ~t~L~~A~~~g~~---~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          345 YSPLHQAAQQGHT---DIVTLLLKNGASPNE  372 (437)
T ss_dssp             CCHHHHHHHTTCH---HHHHHHHHTTCCSCC
T ss_pred             CCHHHHHHHCChH---HHHHHHHHCcCCCCC
Confidence            6666666665443   566666665555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.9e-29  Score=236.33  Aligned_cols=180  Identities=22%  Similarity=0.201  Sum_probs=156.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ ++.+++..|..|.||||+|+..|+.+++++|++++.++ +..+ ..|.||||+|+..|+.++++.|++.++
T Consensus       160 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  236 (437)
T 1n11_A          160 RVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPA-WNGYTPLHIAAKQNQVEVARSLLQYGG  236 (437)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45555555 78889999999999999999999999999999998887 7777 789999999999999999999999998


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +..+..|.||||+|+..|+.+++++|++    .+.+++.+|..|+||||+|++.|+.+++ ++|.++|++++.+|..
T Consensus       237 ~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~-~~Ll~~g~~~~~~~~~  310 (437)
T 1n11_A          237 SA-NAESVQGVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVA-DVLIKHGVMVDATTRM  310 (437)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHHTCHHHH-HHHHHHTCCTTCCCSS
T ss_pred             CC-CCCCCCCCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHhCCccCCCCCCC
Confidence            87 7788899999999999999999999998    6778889999999999999999998888 4555689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      |+||||+|+..++.   +++++|.+.|..+..
T Consensus       311 g~t~L~~A~~~g~~---~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          311 GYTPLHVASHYGNI---KLVKFLLQHQADVNA  339 (437)
T ss_dssp             CCCHHHHHHHSSCS---HHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHHcCcH---HHHHHHHhcCCCCCC
Confidence            99999999999777   888888887766543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-29  Score=232.90  Aligned_cols=179  Identities=17%  Similarity=0.163  Sum_probs=158.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcC---CCccccccCCCCCcHHHHHHhcC---cHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEID---QSASNIANKDRKMTALHLAAGRG---HARTVET   75 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~   75 (352)
                      |+++.|++ .|++++.+|..|+||||+|+..|+.+++++|++++   .++ +..+ ..|.||||+|+..|   +.+++++
T Consensus       180 ~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d-~~g~t~L~~A~~~~~~~~~~~v~~  256 (373)
T 2fo1_E          180 RLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELD-RNGMTALMIVAHNEGRDQVASAKL  256 (373)
T ss_dssp             HHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCC-TTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred             HHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcC-CCCCCHHHHHHHhCCcchHHHHHH
Confidence            46666665 78999999999999999999999999999999987   455 7788 89999999999998   8999999


Q ss_pred             HHhhCCCccc-------cccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346           76 ILSLSPDCYE-------LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus        76 Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      |+++++++..       ..|..|+||||+|+.+|+.+++++|++.   .+.++|.+|.+|+||||+|+..|+.++++ +|
T Consensus       257 Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~n~~d~~g~TpL~~A~~~g~~~iv~-~L  332 (373)
T 2fo1_E          257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDEDGKTPIMLAAQEGRIEVVM-YL  332 (373)
T ss_dssp             HHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTCCCTTCCCHHHHHHHHTCHHHHH-HH
T ss_pred             HHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh---cCCCccCcCCCCCCHHHHHHHcCCHHHHH-HH
Confidence            9999999832       2577999999999999999999999983   23889999999999999999999999994 55


Q ss_pred             hhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          149 KKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       149 ~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      .++|++++.+|.+|+||+|+|+..++.   +++++|.+.+..
T Consensus       333 l~~gad~~~~d~~g~t~l~~A~~~g~~---~iv~~Ll~~~a~  371 (373)
T 2fo1_E          333 IQQGASVEAVDATDHTARQLAQANNHH---NIVDIFDRCRPE  371 (373)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHHHHTTCH---HHHHHHHTTC--
T ss_pred             HHcCCCccCCCCCCCCHHHHHHHcCCH---HHHHHHHhcCcc
Confidence            568999999999999999999999766   899999887653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=2.5e-29  Score=225.29  Aligned_cols=178  Identities=15%  Similarity=0.087  Sum_probs=158.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.+|  |+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        45 ~~v~~Ll~-~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga  119 (285)
T 3kea_A           45 RLVCTLLN-AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFD-DKGNTALYYAVDSGNMQTVKLFVKKNW  119 (285)
T ss_dssp             HHHHHHHH-TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCG
T ss_pred             HHHHHHHh-CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC-CCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            56777776 688888874  899999999999999999999999998 8888 799999999999999999999999999


Q ss_pred             CccccccCCC-CchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCC-CCCcHHHHHHhcCChHHHHHHHhhcCccccccc
Q 045346           82 DCYELVDNKG-WNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA-MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN  159 (352)
Q Consensus        82 ~~~~~~d~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n  159 (352)
                      ++ +.+|..| .||||+|+..|+.+++++|++.    +.+.  .|. .|+||||+|+..|+.++++ +|.++|++++.+|
T Consensus       120 ~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~~--~~~~~g~t~L~~A~~~g~~~~v~-~Ll~~gad~n~~~  191 (285)
T 3kea_A          120 RL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPST--FDLAILLSCIHITIKNGHVDMMI-LLLDYMTSTNTNN  191 (285)
T ss_dssp             GG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCTT--CCCSTHHHHHHHHHHTTCHHHHH-HHHHHHHHTCTTC
T ss_pred             CC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCcc--ccccCCccHHHHHHHcChHHHHH-HHHHcCCCCCccc
Confidence            98 8889999 8999999999999999999994    4433  333 8999999999999999995 5556899999999


Q ss_pred             cCCcch-HHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          160 KRNVSV-RHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       160 ~~g~Tp-l~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      ..|+|| ||+|+..++.   +++++|.+.|+++....
T Consensus       192 ~~g~t~~L~~A~~~~~~---~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          192 SLLFIPDIKLAIDNKDI---EMLQALFKYDINIYSAN  225 (285)
T ss_dssp             CCBCCTTHHHHHHHTCH---HHHHHHTTSCBCSTTTT
T ss_pred             CCCCChHHHHHHHcCCH---HHHHHHHHcCCCCCCCC
Confidence            999998 9999999765   99999999998886643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=213.01  Aligned_cols=178  Identities=21%  Similarity=0.282  Sum_probs=155.7

Q ss_pred             HHHHHHHHhcccccc-ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346            2 AALRKLVEEKKKMIK-ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus         2 e~v~~lL~~~~~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      ++++.|++ .+.+++ ..+..|+||||+|+..|+.+++++|++.+.++ +.++ ..|.||||+|+..|+.++++.|++++
T Consensus        56 ~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~  132 (240)
T 3eu9_A           56 DLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLID-GEGCSCIHLAAQFGHTSIVAYLIAKG  132 (240)
T ss_dssp             HHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHH-cCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccC-CCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence            56777777 455555 44556999999999999999999999999988 7788 79999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCC-HHHHHHHHhcCchhhhhhccCCC-CCCcHHHHHHhcCChHHHHHHHhhcCcccccc
Q 045346           81 PDCYELVDNKGWNFLHYAMVSFR-VEQLTNLLENNPLARSLINEGDA-MENTPLHVLAAVRPKEFHAVMIKKTQANYDAV  158 (352)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~  158 (352)
                      +++ +..|..|.||||+|+..++ .++++.|++    .+.+++.++. .|+||||+|+..|+.++++ +|.++|++++.+
T Consensus       133 ~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~  206 (240)
T 3eu9_A          133 QDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLT----FNVSVNLGDKYHKNTALHWAVLAGNTTVIS-LLLEAGANVDAQ  206 (240)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHH----TTCCTTCCCTTTCCCHHHHHHHHTCHHHHH-HHHHHTCCTTCB
T ss_pred             CCc-cccCCCCCcHHHHHHHhCChHHHHHHHHh----cCCCcchhhccCCCcHHHHHHHcCCHHHHH-HHHHcCCCCCCc
Confidence            998 8889999999999997766 789999998    7788999997 8999999999999999985 555689999999


Q ss_pred             ccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCC
Q 045346          159 NKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       159 n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~  191 (352)
                      |.+|+||+|+|+..++.   +++++|.+.+...
T Consensus       207 ~~~g~t~l~~A~~~~~~---~~v~~L~~~~~~~  236 (240)
T 3eu9_A          207 NIKGESALDLAKQRKNV---WMINHLQEARQAK  236 (240)
T ss_dssp             CTTSCBHHHHHHHTTCH---HHHHHHHHHC---
T ss_pred             CCCCCCHHHHHHHcCcH---HHHHHHHHhhhcc
Confidence            99999999999999766   8999998876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=1.8e-29  Score=219.57  Aligned_cols=172  Identities=17%  Similarity=0.127  Sum_probs=145.6

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHhhcCCC---ccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCC
Q 045346           16 KETDQYGWTPIHYAAYYGNYGMVNLLLEIDQS---ASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGW   92 (352)
Q Consensus        16 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~   92 (352)
                      +.+|.+|+||||+|+..|+.++++.|++.+..   ..+.++ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   79 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGN   79 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC-TTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCC
Confidence            46789999999999999999999999997653   237788 79999999999999999999999999998 88999999


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCch--hhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccccccc-CCcchHHHH
Q 045346           93 NFLHYAMVSFRVEQLTNLLENNPL--ARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK-RNVSVRHIF  169 (352)
Q Consensus        93 t~Lh~A~~~~~~~~v~~Ll~~~~~--~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~-~g~Tpl~~a  169 (352)
                      ||||+|+..|+.+++++|++....  ....++.+|..|+||||+|+..|+.++++ +|.+.|++++.+|. .|.||||+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHH-HHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999995431  12347889999999999999999999985 55568999999998 999999999


Q ss_pred             hhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          170 SYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +..++.   +++++|.+.|+.+..
T Consensus       159 ~~~~~~---~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          159 VDLQNP---DLVSLLLKCGADVNR  179 (236)
T ss_dssp             HHTTCH---HHHHHHHTTTCCSCC
T ss_pred             HHcCCH---HHHHHHHHcCCCCCc
Confidence            999765   899999998876654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=8.6e-29  Score=201.19  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=138.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS  101 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (352)
                      |.||||.|+..|+.++++.|++......+..+ ..|.||||+ +..|+.++++.|++.++++ +.+|..|+||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-CCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            56999999999999999999998322337788 899999999 9999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHH
Q 045346          102 FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQ  181 (352)
Q Consensus       102 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (352)
                      |+.+++++|++    .|.++|.+|.+|+||||+|+..|+.++++.|+. . ++++.+|.+|+||+|+|+..++.   +++
T Consensus        79 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~---~~v  149 (156)
T 1bd8_A           79 GFLDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQ---DLV  149 (156)
T ss_dssp             TCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCH---HHH
T ss_pred             CcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcH---HHH
Confidence            99999999999    788999999999999999999999999965554 5 99999999999999999999766   777


Q ss_pred             HHHHH
Q 045346          182 KLSKD  186 (352)
Q Consensus       182 ~~l~~  186 (352)
                      ++|.+
T Consensus       150 ~~Ll~  154 (156)
T 1bd8_A          150 DILQG  154 (156)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=2.5e-28  Score=223.97  Aligned_cols=172  Identities=19%  Similarity=0.237  Sum_probs=141.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ +|.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        72 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (351)
T 3utm_A           72 RIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMD-LWQFTPLHEAASKNRVEVCSLLLSHGA  148 (351)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45566655 67778888888888888888888888888888888777 6777 678888888888888877777777655


Q ss_pred             Ccc-----------------------------------------------------------------------------
Q 045346           82 DCY-----------------------------------------------------------------------------   84 (352)
Q Consensus        82 ~~~-----------------------------------------------------------------------------   84 (352)
                      ++.                                                                             
T Consensus       149 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~  228 (351)
T 3utm_A          149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ  228 (351)
T ss_dssp             CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHH
T ss_pred             CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHH
Confidence            421                                                                             


Q ss_pred             ------------ccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC
Q 045346           85 ------------ELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus        85 ------------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (352)
                                  +.+|.+|+||||+|+.+|+.+++++|++    .|.++|.+|..|+||||+|+..|+.+++ ++|.++|
T Consensus       229 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t~L~~A~~~~~~~~v-~~Ll~~g  303 (351)
T 3utm_A          229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK----HGAKMNALDSLGQTALHRAALAGHLQTC-RLLLSYG  303 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHH-HHHHHTT
T ss_pred             HHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCcHHHH-HHHHHcC
Confidence                        4467889999999999999999999999    7899999999999999999999999998 5566689


Q ss_pred             ccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          153 ANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       153 ~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      ++++.+|.+|+||+|+|.       .++.+++.+.+
T Consensus       304 ad~~~~~~~g~tal~~a~-------~~~~~~l~~~~  332 (351)
T 3utm_A          304 SDPSIISLQGFTAAQMGN-------EAVQQILSEST  332 (351)
T ss_dssp             CCTTCCCTTSCCHHHHSC-------HHHHHHHHHC-
T ss_pred             CCCCCcCCCCCChhhhhh-------HHHHHHHHhcc
Confidence            999999999999999983       25777777644

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.2e-28  Score=228.27  Aligned_cols=171  Identities=22%  Similarity=0.133  Sum_probs=146.2

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCC
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNK   90 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (352)
                      .+.+.+..|.+|+||||+|+..|+.+++++|++++.++ +.+| ..|.||||+|+..|+.+++++|++++++.   .+.+
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~   83 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQN-RFGCTALHLACKFGCVDTAKYLASVGEVH---SLWH   83 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBT
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccC
Confidence            34567888999999999999999999999999999988 8888 89999999999999999999999999965   3468


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCchhhhhhcc-----------------CCCCCCcHHHHHHhcC--ChHHHHHHHhhc
Q 045346           91 GWNFLHYAMVSFRVEQLTNLLENNPLARSLINE-----------------GDAMENTPLHVLAAVR--PKEFHAVMIKKT  151 (352)
Q Consensus        91 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~-----------------~d~~G~T~Lh~A~~~~--~~~~~~~lL~~~  151 (352)
                      |+||||+|+..|+.+++++|++.....+.+++.                 +|.+|+||||+|+..|  +.++++ +|.+.
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~-~Ll~~  162 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK-ILVQL  162 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH-HHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH-HHHHc
Confidence            999999999999999999999953323555555                 8999999999999999  888885 55567


Q ss_pred             CccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          152 QANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       152 g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      |++++.+|..|+||||+|+..++.   +++++|.+.|..
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~  198 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNR---EALDLMMDTVPS  198 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHCSC
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCH---HHHHHHHhcccc
Confidence            999999999999999999999766   889999886554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=9.4e-28  Score=203.19  Aligned_cols=171  Identities=16%  Similarity=0.098  Sum_probs=151.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHH
Q 045346           19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA   98 (352)
Q Consensus        19 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (352)
                      +..+.||||.|+..|+.+.++.|++.+....+..+ ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            45789999999999999999999998874448888 89999999999999999999999999998 88999999999999


Q ss_pred             HhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCC--c
Q 045346           99 MVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPK--L  176 (352)
Q Consensus        99 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~--~  176 (352)
                      +..|+.+++++|++.   .+.+++.+|..|+||||+|+..|+.++++.|+...+++++.+|..|+||+|+|+..++.  .
T Consensus        80 ~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           80 GAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             HHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence            999999999999963   45689999999999999999999999996666543399999999999999999988763  3


Q ss_pred             HHHHHHHHHHcCCCCCCc
Q 045346          177 KEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       177 ~~~i~~~l~~~g~~~~~~  194 (352)
                      ..+++++|.+.|..+...
T Consensus       157 ~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          157 YQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             HHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHHHCCCCCCcc
Confidence            368999999999877553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-28  Score=221.22  Aligned_cols=163  Identities=24%  Similarity=0.249  Sum_probs=144.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC-
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS-   80 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-   80 (352)
                      |+++.|++ .|.+++.+|..|+||||+|+..|+.+++++|+++++++ +..+ ..|.||||+|+..|+.++++.++... 
T Consensus        87 ~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~  163 (299)
T 1s70_B           87 DMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVN-SEGDTPLDIAEEEAMEELLQNEVNRQG  163 (299)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcC-CCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence            56676666 78999999999999999999999999999999999988 8888 89999999999999999998877542 


Q ss_pred             CC-------------------------ccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHH
Q 045346           81 PD-------------------------CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL  135 (352)
Q Consensus        81 ~~-------------------------~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (352)
                      .+                         .....+..|.||||+|+.+|+.+++++|++    .|.++|.+|.+|+||||+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHH
T ss_pred             CCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHH
Confidence            22                         112356789999999999999999999999    7889999999999999999


Q ss_pred             HhcCChHHHHHHHhhcCccccccccCCcchHHHHhhc
Q 045346          136 AAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYG  172 (352)
Q Consensus       136 ~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~  172 (352)
                      +..|+.+++ .+|.+.|++++.+|..|+||+|+|.+.
T Consensus       240 ~~~~~~~~v-~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          240 AHWGKEEAC-RILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHTTCHHHH-HHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HhcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            999999998 556668999999999999999999654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.3e-28  Score=202.62  Aligned_cols=153  Identities=23%  Similarity=0.347  Sum_probs=142.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.+++..+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   96 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMN-RGDDTPLHLAASHGHRDIVQKLLQYKA   96 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            67889999889999999999999999999999999999999999988 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|..|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..++.+++ ++|.+.|++++..+.+
T Consensus        97 ~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~~-~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A           97 DI-NAVNEHGNVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLRELLR-ERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSSBCCTTSCCGGGGSCHHHHHHHH-HHHHHTTCCCSCBCCC
T ss_pred             CC-CccCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcchhccCCCCcHHHHHHHHHHHHH-HHHHHhhcCcccCCcc
Confidence            98 8899999999999999999999999999    7889999999999999999999887777 5667799999987765


Q ss_pred             C
Q 045346          162 N  162 (352)
Q Consensus       162 g  162 (352)
                      +
T Consensus       171 ~  171 (179)
T 3f6q_A          171 D  171 (179)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=2.2e-28  Score=199.11  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=117.3

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCc-
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWN-   93 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-   93 (352)
                      .+..++.|.||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+ .|+.+++++|+++++++ +.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcH
Confidence            4567889999999999999999999999999888 8888 79999999985 99999999999999998 889999999 


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346           94 FLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus        94 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      |||+|+..|+.+++++|++    .|.++|.+|.+|+||||+|+..|+.+++ ++|.++|++++.+|..|.||.+-+
T Consensus        81 pL~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~~~~v-~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGHRDVA-RYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTCHHHH-HHHSSCC-----------------
T ss_pred             HHHHHHHCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHhCHHHHH-HHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999    7899999999999999999999999988 566679999999999999998744

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.4e-28  Score=214.08  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=140.1

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHhhcCCCcccc----ccCCCCCcHHHHHHhc---CcHHHHHHHHhhCCCccc----
Q 045346           21 YGWTPIHYAAYYGNYG----MVNLLLEIDQSASNI----ANKDRKMTALHLAAGR---GHARTVETILSLSPDCYE----   85 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~----   85 (352)
                      .|+||||+|++.|+.+    ++++|++++.++ +.    +| ..|.||||+|+..   |+.+++++|++.++++..    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d-~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEG-STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBT-TTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCC-CCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            4899999999999997    567777788888 65    77 8999999999999   999999999999876621    


Q ss_pred             ------cccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCC-------------CCcHHHHHHhcCChHHHHH
Q 045346           86 ------LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-------------ENTPLHVLAAVRPKEFHAV  146 (352)
Q Consensus        86 ------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~-------------G~T~Lh~A~~~~~~~~~~~  146 (352)
                            ..|..|+||||+|+..|+.+++++|++    .|.++|.+|..             |+||||+|+..|+.++++.
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  234789999999999999999999999    78889999886             9999999999999999955


Q ss_pred             HHhh--cCccccccccCCcchHHHHhhcCCCcH------HHHHHHHHHcCCCC
Q 045346          147 MIKK--TQANYDAVNKRNVSVRHIFSYGYPKLK------EEIQKLSKDFGRGQ  191 (352)
Q Consensus       147 lL~~--~g~~~~~~n~~g~Tpl~~a~~~~~~~~------~~i~~~l~~~g~~~  191 (352)
                      |+..  .|++++.+|.+|+||||+|+..++...      .+++++|.+.|+++
T Consensus       155 Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            5543  899999999999999999998433221      13888998877655

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.5e-27  Score=193.89  Aligned_cols=142  Identities=27%  Similarity=0.406  Sum_probs=130.3

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        28 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~  104 (169)
T 2y1l_E           28 DEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVD-HAGMTPLRLAALFGHLEIVEVLLKNGA  104 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56777776 68889999999999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (352)
                      ++ +.+|.+|+||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..|+.++++ +|.+.|
T Consensus       105 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~-~L~~~G  169 (169)
T 2y1l_E          105 DV-NANDMEGHTPLHLAAMFGHLEIVEVLLK----NGADVNAQDKFGKTAFDISIDNGNEDLAE-ILQKLN  169 (169)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHTC-
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhCCHHHHH-HHHHcC
Confidence            98 8889999999999999999999999999    78899999999999999999999999885 544443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=6.7e-28  Score=191.62  Aligned_cols=134  Identities=17%  Similarity=0.113  Sum_probs=121.6

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCC-
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNK-   90 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-   90 (352)
                      +.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+. |+.+++++|+++++++ +.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALN-RFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcC-CCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence            4578899999999999999999999999999999887 8888 799999999999 9999999999999998 788888 


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc
Q 045346           91 GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus        91 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~  154 (352)
                      |+||||+|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..++.++++ +|.++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~~~~~~-~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHR----AGARLDVCDAWGRLPVDLAEEQGHRDIAR-YLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHH----TCCCCCCCSSSSSCHHHHHHHHTCHHHHH-HHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHH-HHHHcCCC
Confidence            9999999999999999999999    77889999999999999999999988884 55557764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.4e-27  Score=195.13  Aligned_cols=143  Identities=18%  Similarity=0.264  Sum_probs=129.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ ++.+++.+|..|+||||+|+. |+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        19 ~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   94 (162)
T 1ihb_A           19 EQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKD-RTGFAVIHDAARAGFLDTLQTLLEFQA   94 (162)
T ss_dssp             HHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56777775 788899999999999999999 9999999999999988 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhh-hccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL-INEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~-~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~  154 (352)
                      ++ +.+|.+|+||||+|+..|+.+++++|++    .+.+ ++.+|.+|+||||+|+..|+.+++ ++|.++|+|
T Consensus        95 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~l~~A~~~~~~~~~-~~Ll~~GAd  162 (162)
T 1ihb_A           95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK----HTASNVGHRNHKGDTACDLARLYGRNEVV-SLMQANGAG  162 (162)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----HSCCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTC--
T ss_pred             CC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----ccCCCCCCcCCCCCcHHHHHHHcCCHHHH-HHHHHhCCC
Confidence            98 8899999999999999999999999999    5665 689999999999999999999998 455567875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.5e-28  Score=212.15  Aligned_cols=161  Identities=14%  Similarity=0.068  Sum_probs=113.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHH
Q 045346           19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA   98 (352)
Q Consensus        19 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (352)
                      +..|.||||.|++.|+.+.++.|+++|.++ +. + ..|.||||.|+..|+.++++.|++.++++ +.+|..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-N-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-cc-C-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            457999999999999999999999999888 43 3 57899999999999999999999999988 88999999999999


Q ss_pred             HhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCc-chHHHH--hhcCCC
Q 045346           99 MVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNV-SVRHIF--SYGYPK  175 (352)
Q Consensus        99 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~-Tpl~~a--~~~~~~  175 (352)
                      +.+|+.+++++|++    .|.++|.+|.+|+||||+|+..|+.+++ ++|.++|++++.+|..|. ||+|+|  +..++.
T Consensus        78 ~~~g~~~~v~~Ll~----~ga~~~~~d~~g~tpL~~A~~~~~~~~v-~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAASCNNVQVC-KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHH-HHHHHcCCCcceecCCCCcchHHHHHHhhhccH
Confidence            99999999999999    7899999999999999999999999998 555568999999998887 999999  556555


Q ss_pred             cHHHHHHHHHHcCCCC
Q 045346          176 LKEEIQKLSKDFGRGQ  191 (352)
Q Consensus       176 ~~~~i~~~l~~~g~~~  191 (352)
                         +++++|.+.|..+
T Consensus       153 ---~~~~~Ll~~~a~~  165 (239)
T 1ycs_B          153 ---QCSQFLYGVQEKM  165 (239)
T ss_dssp             ---CHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHhhhcc
Confidence               6778887766544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=7.4e-28  Score=214.01  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=141.0

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhc----CCCccc---cccCCCCCcHHHHHHhc---CcHHHHHHHHhhCC
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEI----DQSASN---IANKDRKMTALHLAAGR---GHARTVETILSLSP   81 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~----~~~~~~---~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~   81 (352)
                      ++..+..|..|+||||+|++.|+.++++.|++.    +.+...   ..+ ..|.||||+|+..   |+.+++++|++.++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDP-ETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCT-TTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccC-cCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            456778899999999999999999999998874    333311   345 7999999999987   99999999999876


Q ss_pred             Ccc----------ccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCC--------------CCCcHHHHHHh
Q 045346           82 DCY----------ELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA--------------MENTPLHVLAA  137 (352)
Q Consensus        82 ~~~----------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~--------------~G~T~Lh~A~~  137 (352)
                      +..          ...|..|+||||+|+..|+.+++++|++    .|.++|.+|.              +|+||||+|+.
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  157 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE----NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC  157 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcCccccccccccccccccccCCCCHHHHHHH
Confidence            531          1256789999999999999999999999    7888999887              79999999999


Q ss_pred             cCChHHHHHHHhh--cCccccccccCCcchHHHHhhcCCCcH------HHHHHHHHHcCCCCC
Q 045346          138 VRPKEFHAVMIKK--TQANYDAVNKRNVSVRHIFSYGYPKLK------EEIQKLSKDFGRGQY  192 (352)
Q Consensus       138 ~~~~~~~~~lL~~--~g~~~~~~n~~g~Tpl~~a~~~~~~~~------~~i~~~l~~~g~~~~  192 (352)
                      .|+.++++.|+..  .|++++.+|.+|+||||+|+..++...      .+++++|.+.|..+.
T Consensus       158 ~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            9999999555543  899999999999999999999876421      578888888776543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5e-27  Score=193.04  Aligned_cols=145  Identities=23%  Similarity=0.302  Sum_probs=132.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.+++ .+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        17 ~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (167)
T 3v31_A           17 LYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLG-KGRESALSLACSKGYTDIVKMLLDCGV   93 (167)
T ss_dssp             HHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHH-cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcC-CCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            56778887 56789999999999999999999999999999999888 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANY  155 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~  155 (352)
                      ++ +.+|..|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..|+.++++ +|.+++.+.
T Consensus        94 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~-~L~~~~~~~  161 (167)
T 3v31_A           94 DV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGADPTIETDSGYNSMDLAVALGYRSVQQ-VIESHLLKL  161 (167)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHH-HHHHHHHHH
T ss_pred             CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHH-HHHHHHHHH
Confidence            98 8889999999999999999999999999    78899999999999999999999999985 454455554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.1e-26  Score=212.86  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=149.0

Q ss_pred             HHHHHHHHhccccccc----------cCCCCChHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcHHHHHHhcCc-
Q 045346            2 AALRKLVEEKKKMIKE----------TDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRKMTALHLAAGRGH-   69 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~----------~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~-   69 (352)
                      ++++.++. .|++++.          .+..|.||||+|++.|+.+++++|+++ +.++ +.++ ..|.||+|.++..++ 
T Consensus       139 ~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d-~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          139 KALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACD-NMGRNALIHALLSSDD  215 (337)
T ss_dssp             HHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCC-TTSCCHHHHHHHHSCT
T ss_pred             HHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccC-CCCCcHHHHHHHHcCc
Confidence            34555554 6665553          455799999999999999999999975 7777 8888 899999999876543 


Q ss_pred             ---HHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHH
Q 045346           70 ---ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAV  146 (352)
Q Consensus        70 ---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  146 (352)
                         .+++++|+++|+++ +.+|.+|+||||+|++.|+.++++.|++.   .+.++|.+|.+|+||||+|++.|+.+++ +
T Consensus       216 ~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A~~~g~~~iv-~  290 (337)
T 4g8k_A          216 SDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIA-E  290 (337)
T ss_dssp             TTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHHHHTTCHHHH-H
T ss_pred             ccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHHHHcCCHHHH-H
Confidence               46889999999998 88999999999999999999999999984   4678999999999999999999999999 5


Q ss_pred             HHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          147 MIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       147 lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      +|.++|+++|.     .+|||+|+..++.   +++++|.++|+.+.
T Consensus       291 ~Ll~~GAd~n~-----~~~L~~A~~~~~~---~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          291 LLCKRGASTDC-----GDLVMTARRNYDH---SLVKVLLSHGAKED  328 (337)
T ss_dssp             HHHTTSCSSTT-----CCHHHHHHHTTCH---HHHHHHHHTTCCC-
T ss_pred             HHHHCCCCCCC-----CCHHHHHHHcCCH---HHHHHHHHCcCCCC
Confidence            56678999875     4699999999766   89999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1e-26  Score=188.86  Aligned_cols=139  Identities=19%  Similarity=0.264  Sum_probs=129.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.++.+++..+.+++.+|..|+||||+ +..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++|+
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   92 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQD-TSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            678889987666899999999999999 9999999999999999988 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHh
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIK  149 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~  149 (352)
                      ++ +.+|.+|+||||+|+.+|+.+++++|++    . .+++.+|.+|+||||+|+..|+.++++.|+.
T Consensus        93 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           93 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAA----E-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT----T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CC-CCcCCCCCcHHHHHHHhChHHHHHHHHh----c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            98 8899999999999999999999999998    5 7899999999999999999999999965553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.4e-27  Score=193.66  Aligned_cols=143  Identities=20%  Similarity=0.269  Sum_probs=130.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.++.|++..+.+++..|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        22 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   99 (165)
T 3twr_A           22 ETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKD-KGGLVPLHNACSYGHYEVAELLVKHGA   99 (165)
T ss_dssp             HHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccC-CCCCCHHHHHHHcCcHHHHHHHHhCCC
Confidence            67888888888889999999999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      ++ +.+|..|+||||+|+.+|+.+++++|++    .|.+++.+|.+|+||||+|+. ++.+++ ++|.+.|+
T Consensus       100 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~a~~-~~~~i~-~~L~~~gA  164 (165)
T 3twr_A          100 VV-NVADLWKFTPLHEAAAKGKYEICKLLLQ----HGADPTKKNRDGNTPLDLVKD-GDTDIQ-DLLRGDAA  164 (165)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTGGGSCT-TCHHHH-HHHHTC--
T ss_pred             CC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCChhHhHhc-CChHHH-HHHhhccc
Confidence            98 8899999999999999999999999999    788999999999999999877 777877 55555554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-26  Score=186.56  Aligned_cols=135  Identities=24%  Similarity=0.335  Sum_probs=124.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++. +.+++ .|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        16 ~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~   91 (153)
T 1awc_B           16 DEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DART-KVDRTPLHMAASEGHANIVEVLLKHGA   91 (153)
T ss_dssp             HHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcChHHHHHHHHHcCC
Confidence            567777774 55555 5889999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHH
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHA  145 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  145 (352)
                      ++ +.+|.+|+||||+|+.+|+.+++++|++    .|.+++.+|.+|+||||+|+..|+.++++
T Consensus        92 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           92 DV-NAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            98 8899999999999999999999999999    78899999999999999999999988874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.6e-26  Score=194.49  Aligned_cols=140  Identities=21%  Similarity=0.139  Sum_probs=130.2

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      ++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++
T Consensus        49 ~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~  125 (192)
T 2rfm_A           49 NAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGA  125 (192)
T ss_dssp             GGHHHHHH-HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            56777776 57889999999999999999999999999999999988 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHh
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIK  149 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~  149 (352)
                      ++ +.+|..|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..|+.++++.|+.
T Consensus       126 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          126 NV-NDRNLEGETPLIVASKYGRSEIVKKLLE----LGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             CS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            98 8899999999999999999999999999    788999999999999999999999999965554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.2e-27  Score=207.40  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=134.6

Q ss_pred             HHHHHHhcccccc---ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhC
Q 045346            4 LRKLVEEKKKMIK---ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLS   80 (352)
Q Consensus         4 v~~lL~~~~~~~~---~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~   80 (352)
                      +++||+ ++..++   ..+.+|.||||+|+..|+.+++++|++.+.++ +.+| ..|.||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~-~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLR-KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPN-EEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             Ceehhc-cCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            355665 444444   45567888999999999999999999999988 8888 89999999999999999999999999


Q ss_pred             CCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHH--HhcCChHHHHHHHhhcCccccc
Q 045346           81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVL--AAVRPKEFHAVMIKKTQANYDA  157 (352)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A--~~~~~~~~~~~lL~~~g~~~~~  157 (352)
                      +++ +.+|..|+||||+|+.+|+.+++++|++    .|.+++.+| .+|+||||+|  +..|+.+++ ++|.+.|++++.
T Consensus        78 a~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v-~~Ll~~ga~~~~  151 (229)
T 2vge_A           78 ANV-NSPDSHGWTPLHCAASCNDTVICMALVQ----HGAAIFATTLSDGATAFEKCDPYREGYADCA-TYLADVEQSMGL  151 (229)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHH-HHHHHHHHHTTT
T ss_pred             CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCCHHHHHHHHhcChHHHH-HHHHHcCCCccc
Confidence            998 8899999999999999999999999999    788999987 6999999999  899988888 555668999988


Q ss_pred             cccCCcchHHHHhhc
Q 045346          158 VNKRNVSVRHIFSYG  172 (352)
Q Consensus       158 ~n~~g~Tpl~~a~~~  172 (352)
                      +|..|.||++.+...
T Consensus       152 ~~~~~~~~l~~~~~~  166 (229)
T 2vge_A          152 MNSGAVYALWDYSAE  166 (229)
T ss_dssp             SGGGEEEESSCBCCS
T ss_pred             ccCCchHHHHHHhhc
Confidence            888888888865444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.9e-28  Score=211.34  Aligned_cols=162  Identities=12%  Similarity=0.051  Sum_probs=144.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ .|.+++.+|..|+||||+|+..|+.+++++|+++++++ +.+| ..|.||||+|+..|+.+++++|++.++
T Consensus        35 ~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           35 EVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPD-SHGWTPLHCAASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56777776 67889999999999999999999999999999999998 8888 799999999999999999999999999


Q ss_pred             Cccccc-cCCCCchhHHH--HhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc--cc
Q 045346           82 DCYELV-DNKGWNFLHYA--MVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN--YD  156 (352)
Q Consensus        82 ~~~~~~-d~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~--~~  156 (352)
                      ++ +.. +.+|+||||+|  +..|+.+++++|++    .|.+++.+|..|.||+|.++..+..    .+|.+.|++  ++
T Consensus       112 ~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~~l~~~~~~~~~----~~ll~~ga~~~~~  182 (229)
T 2vge_A          112 AI-FATTLSDGATAFEKCDPYREGYADCATYLAD----VEQSMGLMNSGAVYALWDYSAEFGD----ELSFREGESVTVL  182 (229)
T ss_dssp             CT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH----HHHHTTTSGGGEEEESSCBCCSSTT----BCCBCTTCEEEEE
T ss_pred             Cc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH----cCCCcccccCCchHHHHHHhhcccc----ccCcccccccccc
Confidence            99 555 47999999999  99999999999999    8999999999999999976655422    355667888  77


Q ss_pred             ccccCCcchHHHHhhcCCC
Q 045346          157 AVNKRNVSVRHIFSYGYPK  175 (352)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~  175 (352)
                      .+|.+|+||||+|+..++.
T Consensus       183 ~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          183 RRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             ESSCTTCSSEEEEEETTEE
T ss_pred             ccCCCcccHHHHHHHcCCc
Confidence            8899999999999998766

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.2e-27  Score=197.28  Aligned_cols=153  Identities=12%  Similarity=0.011  Sum_probs=131.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcH----HHHHHHHhhCCCccccccCCCCchhHH
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHA----RTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      ++++||.|++.|+.+.++.+++.+.+.  ..+ ..|+||||+|+.+|+.    +++++|+++|+++ +.+|.+|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~-~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KES-VLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHH-HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccc-cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            578999999999999999999876543  223 5799999999999975    5999999999999 8899999999999


Q ss_pred             HHhcCC------HHHHHHHHhcCchhhhhhccCCCCCC-cHHHHHHhcCCh-----HHHHHHHhh-cCccccccccCCcc
Q 045346           98 AMVSFR------VEQLTNLLENNPLARSLINEGDAMEN-TPLHVLAAVRPK-----EFHAVMIKK-TQANYDAVNKRNVS  164 (352)
Q Consensus        98 A~~~~~------~~~v~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~~-----~~~~~lL~~-~g~~~~~~n~~g~T  164 (352)
                      |+..++      .+++++|++    .|+++|.+|.+|+ ||||+|+..+..     +++ ++|.+ +|++++.+|++|+|
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv-~~Ll~~~gad~~~~d~~G~T  156 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLE----KGADITALYKPYKIVVFKNIFNYFVDENEMIPLY-KLIFSQSGLQLLIKDKWGLT  156 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH----TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH-HHHHTSTTCCTTCCCTTSCC
T ss_pred             HHHcCCcchhhHHHHHHHHHH----CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH-HHHHHhcCCCCcccCCCCCC
Confidence            999987      578999999    8999999999999 999999995542     345 55566 99999999999999


Q ss_pred             hHHHHhhcCCCcHHHHHHHHHH
Q 045346          165 VRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       165 pl~~a~~~~~~~~~~i~~~l~~  186 (352)
                      |||+|...++.   +++++|.+
T Consensus       157 pL~~A~~~~~~---~~v~~L~~  175 (186)
T 3t8k_A          157 ALEFVKRCQKP---IALKMMED  175 (186)
T ss_dssp             HHHHHHTTTCH---HHHHHHHH
T ss_pred             HHHHHHHcCCH---HHHHHHHH
Confidence            99999998766   66666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=8.9e-27  Score=203.19  Aligned_cols=163  Identities=15%  Similarity=0.152  Sum_probs=130.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      +.++.+++ +|.+++. +..|.||||+|+..|+.++++.|+++++++ +.+| ..|.||||+|+..|+.+++++|+++++
T Consensus        19 ~~~~~ll~-~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga   94 (239)
T 1ycs_B           19 KTGSERIA-HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPN-DEGITALHNAVCAGHTEIVKFLVQFGV   94 (239)
T ss_dssp             --------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHhc-cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34555554 7887875 478999999999999999999999999987 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCC-cHHHHH--HhcCChHHHHHHHhhcCcccccc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN-TPLHVL--AAVRPKEFHAVMIKKTQANYDAV  158 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~~~~~lL~~~g~~~~~~  158 (352)
                      ++ +.+|.+|+||||+|+.+|+.+++++|++    .|.+++.+|.+|. ||||+|  +..|+.+++ ++|.+.|++++..
T Consensus        95 ~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~-~~Ll~~~a~~~~~  168 (239)
T 1ycs_B           95 NV-NAADSDGWTPLHCAASCNNVQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGYTQCS-QFLYGVQEKMGIM  168 (239)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH-HHHHHHHHHTTTT
T ss_pred             CC-CccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcceecCCCCcchHHHHHHhhhccHHHH-HHHHHhhhccccc
Confidence            98 8899999999999999999999999999    7889999998887 999999  778888988 5566689888876


Q ss_pred             ---------ccCCcchHHHHhhcCC
Q 045346          159 ---------NKRNVSVRHIFSYGYP  174 (352)
Q Consensus       159 ---------n~~g~Tpl~~a~~~~~  174 (352)
                               +..++++.+++...|+
T Consensus       169 ~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          169 NKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             ccceEEEEeccCCCCCCcccccCCC
Confidence                     4456777777766654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=3.1e-26  Score=209.16  Aligned_cols=160  Identities=16%  Similarity=0.091  Sum_probs=135.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCcccc-ccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           25 PIHYAAYYGNYGMVNLLLEIDQSASNI-ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      .+|+|+..+..++++.|++.+.++ +. +| ..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNL-NIPVD-EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCS-CSCCS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCc-ccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence            358888888889999999999998 77 78 89999999999999999999999999999 8899999999999999998


Q ss_pred             ---HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHh----cCChHHHHHHHhhcCc-----------------------
Q 045346          104 ---VEQLTNLLENNPLARSLINEGDAMENTPLHVLAA----VRPKEFHAVMIKKTQA-----------------------  153 (352)
Q Consensus       104 ---~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~----~~~~~~~~~lL~~~g~-----------------------  153 (352)
                         .+.++.|++.   ...+++.+|.+|+||||+|++    .|+.++++.++. .+.                       
T Consensus       177 ~~~~~~~~~ll~~---~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~-~~~~~~~~~~~~~i~~~~~~~g~~~~  252 (327)
T 1sw6_A          177 NYDSGTFEALLDY---LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIVKKQNRPIQSGTNEKESKPN  252 (327)
T ss_dssp             HHHTTCHHHHHHH---HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHHHGGGCCEEEC---------
T ss_pred             cccHHHHHHHHHh---hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH-HHHHHHhcccchHHHhhhhcccCCcc
Confidence               6788888883   126799999999999999999    888888865543 321                       


Q ss_pred             ----------------------cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          154 ----------------------NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       154 ----------------------~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                                            +++.+|.+|+||||+|+..++.   +++++|.+.|+++...
T Consensus       253 ~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~---~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI---SIVDALLDYGADPFIA  312 (327)
T ss_dssp             -------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH---HHHHHHHHTTCCTTCC
T ss_pred             cccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCccc
Confidence                                  5788899999999999999765   8999999998877543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.4e-26  Score=201.64  Aligned_cols=168  Identities=15%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhh----cCCCcccccc---CCCCCcHHHHHH---hcCcHHHHHHHHhhCCCc-----
Q 045346           19 DQYGWTPIHYAAYYGNYGMVNLLLE----IDQSASNIAN---KDRKMTALHLAA---GRGHARTVETILSLSPDC-----   83 (352)
Q Consensus        19 d~~g~tpLh~A~~~g~~~~v~~Ll~----~~~~~~~~~~---~~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~-----   83 (352)
                      +..|+||||.|++.|+.+.++.|++    .+.++ +..+   +..|.||||+|+   ..|+.+++++|++.+++.     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            5679999999999999996555554    77776 4333   157999999999   779999999999987542     


Q ss_pred             -----cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC--------------CCCCcHHHHHHhcCChHHH
Q 045346           84 -----YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD--------------AMENTPLHVLAAVRPKEFH  144 (352)
Q Consensus        84 -----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d--------------~~G~T~Lh~A~~~~~~~~~  144 (352)
                           ....|.+|+||||+|+..|+.+++++|++    .|.++|.+|              .+|+||||+|+..|+.+++
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence                 14456699999999999999999999999    788899998              6899999999999999999


Q ss_pred             HHHHhh--cCccccccccCCcchHHHHhhcCCCcH------HHHHHHHHHcCCCC
Q 045346          145 AVMIKK--TQANYDAVNKRNVSVRHIFSYGYPKLK------EEIQKLSKDFGRGQ  191 (352)
Q Consensus       145 ~~lL~~--~g~~~~~~n~~g~Tpl~~a~~~~~~~~------~~i~~~l~~~g~~~  191 (352)
                      +.|+..  .|++++.+|.+|+||||+|+..++...      .+++++|.+.|+.+
T Consensus       157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            544443  899999999999999999998766422      47888888877654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=7.2e-26  Score=179.83  Aligned_cols=130  Identities=16%  Similarity=0.123  Sum_probs=120.2

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCC-C
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-E  128 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~-G  128 (352)
                      +.++ ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+. |+.+++++|++    .+.++|.+|.. |
T Consensus         6 ~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g   78 (136)
T 1d9s_A            6 HMLG-GSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATL   78 (136)
T ss_dssp             SCCC-CCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTT
T ss_pred             cCCC-CCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCC
Confidence            7777 79999999999999999999999999998 8889999999999999 99999999999    78899999999 9


Q ss_pred             CcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          129 NTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       129 ~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      +||||+|+..|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++++|.+.|++
T Consensus        79 ~t~L~~A~~~~~~~~v~-~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLV-VLHRAGARLDVCDAWGRLPVDLAEEQGHR---DIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHH-HHHHTCCCCCCCSSSSSCHHHHHHHHTCH---HHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHH-HHHHcCCCCCccCCCCCCHHHHHHHcCCH---HHHHHHHHcCCC
Confidence            99999999999999985 55569999999999999999999999665   899999887753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.3e-25  Score=173.70  Aligned_cols=126  Identities=34%  Similarity=0.417  Sum_probs=112.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHh
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV  100 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (352)
                      +|+||||+|++.|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            5889999999999999999999998887 7777 78999999999999999999999999888 7888999999999999


Q ss_pred             cCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc
Q 045346          101 SFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus       101 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~  154 (352)
                      .|+.+++++|++    .+.+++.+|.+|+||||+|+..++.++++ +|.++|+|
T Consensus        78 ~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~-~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHHTCC
T ss_pred             cChHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCcHHHHH-HHHHcCCC
Confidence            999999999998    67888999999999999999999988885 55557765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.2e-25  Score=178.48  Aligned_cols=128  Identities=23%  Similarity=0.260  Sum_probs=110.0

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .....|.||||+|+..|+.+++++|++++.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~   85 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKD-EYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH   85 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence            34556889999999999999999999998887 7788 78999999999999999999999999988 778899999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (352)
                      +|+..|+.+++++|++    .+.+++.+|.+|+||||+|+..++.++++ +|.+.|
T Consensus        86 ~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~tpl~~A~~~~~~~~~~-~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLK----HGADVNAQDKFGKTAFDISIGNGNEDLAE-ILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHC-
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCcCcCCCCCCHHHHHHHCCCHHHHH-HHHHcC
Confidence            9999999999999998    67888999999999999999999988885 444343

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=4.1e-26  Score=181.38  Aligned_cols=121  Identities=23%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .+|.+|+||||+|+..|+.+++++|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKD-HAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            45666777777777777777777777766666 5666 56777777777777777777777766666 566666677777


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHH
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFH  144 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  144 (352)
                      +|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..+..+++
T Consensus        82 ~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLS----YGASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            7777777777766666    5566666666677777766655543333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=5.3e-25  Score=196.14  Aligned_cols=145  Identities=21%  Similarity=0.238  Sum_probs=130.8

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHH-----HcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHH
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAA-----YYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   76 (352)
                      ++++.|++....+++.+|..|+||||+|+     ..++.++++.|++.+... +..+ ..|.||||+|+..|+.+++++|
T Consensus       125 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~-~~g~tpLh~A~~~g~~~~v~~L  202 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKAS-QAGQTALMLAVSHGRVDVVKAL  202 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCT-TTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccC-CCCCCHHHHHHHcCCHHHHHHH
Confidence            56777887554599999999999999999     668899999999999776 6777 7899999999999999999999


Q ss_pred             HhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC
Q 045346           77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (352)
                      +++|+++ +.+|.+|+||||+|+.+|+.+++++|++.   .|.++|.+|.+|+||||+|+..|+.++++.|+.+.+
T Consensus       203 l~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          203 LACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAV---PSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTS---TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc---CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999998 88999999999999999999999999984   478899999999999999999999999977776544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=4e-25  Score=184.69  Aligned_cols=141  Identities=21%  Similarity=0.149  Sum_probs=125.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccccc-CCCCchhH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD-NKGWNFLH   96 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   96 (352)
                      .|.+|+||||+|+..|+.++++.|++ +.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~  115 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            35689999999999999999999999 7777 8888 89999999999999999999999999998 5566 89999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCc
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL  176 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~  176 (352)
                      +|+..|+.+++++|++    .|.+++.+|.+|+||||+|++.++.                  ..+.+|+++|+..+   
T Consensus       116 ~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~---  170 (183)
T 3deo_A          116 MAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIG---  170 (183)
T ss_dssp             HHHHTTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHH---
T ss_pred             HHHhcCcHHHHHHHHH----cCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcC---
Confidence            9999999999999999    7899999999999999999875421                  45689999999884   


Q ss_pred             HHHHHHHHHHc
Q 045346          177 KEEIQKLSKDF  187 (352)
Q Consensus       177 ~~~i~~~l~~~  187 (352)
                      ..+++++|.++
T Consensus       171 ~~~i~~~L~~~  181 (183)
T 3deo_A          171 LEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            45788877653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.9e-25  Score=187.10  Aligned_cols=147  Identities=10%  Similarity=0.026  Sum_probs=123.2

Q ss_pred             HHHHHHHhccccccccC-CCCChHHHHHHHcCCH----HHHHHHhhcCCCccccccCCCCCcHHHHHHhcCc------HH
Q 045346            3 ALRKLVEEKKKMIKETD-QYGWTPIHYAAYYGNY----GMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH------AR   71 (352)
Q Consensus         3 ~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~------~~   71 (352)
                      .++.++..   .++.+| ..|+||||+|+..|+.    +++++|+++|+++ +.++ ..|+||||+|+..|+      .+
T Consensus        21 ~~~~l~~~---~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d-~~g~TpLh~a~~~~~~~~~~~~~   95 (186)
T 3t8k_A           21 DFLELFEK---GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRT-KEGTTLFFPLFQGGGNDITGTTE   95 (186)
T ss_dssp             HHHHHHHH---SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCC-TTCCCTHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhc---CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCC-CCCCcHHHHHHHcCCcchhhHHH
Confidence            45555553   345555 7799999999999985    5999999999999 9999 899999999999987      68


Q ss_pred             HHHHHHhhCCCccccccCCCC-chhHHHHhcCC-----HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHH
Q 045346           72 TVETILSLSPDCYELVDNKGW-NFLHYAMVSFR-----VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHA  145 (352)
Q Consensus        72 ~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  145 (352)
                      ++++|+++|+++ +.+|.+|+ ||||+|+..+.     .+++++|++.   .|+++|.+|.+|+||||+|++.++.+.+ 
T Consensus        96 iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~---~gad~~~~d~~G~TpL~~A~~~~~~~~v-  170 (186)
T 3t8k_A           96 LCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ---SGLQLLIKDKWGLTALEFVKRCQKPIAL-  170 (186)
T ss_dssp             HHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS---TTCCTTCCCTTSCCHHHHHHTTTCHHHH-
T ss_pred             HHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh---cCCCCcccCCCCCCHHHHHHHcCCHHHH-
Confidence            899999999999 88999999 99999999554     4588888873   4789999999999999999999998888 


Q ss_pred             HHHhhcCccccccc
Q 045346          146 VMIKKTQANYDAVN  159 (352)
Q Consensus       146 ~lL~~~g~~~~~~n  159 (352)
                      ++|.+...+.+.++
T Consensus       171 ~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          171 KMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhccc
Confidence            55555555565554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=5.1e-25  Score=174.99  Aligned_cols=128  Identities=23%  Similarity=0.269  Sum_probs=112.6

Q ss_pred             cccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCc
Q 045346           51 IANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT  130 (352)
Q Consensus        51 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T  130 (352)
                      .+| .+|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++    .+.+++.+|.+|+|
T Consensus         5 ~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTN-HRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQNDS   78 (137)
T ss_dssp             CCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCGGGCC
T ss_pred             CcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCCCCCC
Confidence            456 79999999999999999999999999998 8899999999999999999999999999    78899999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          131 PLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      |||+|+..++.++++ +|.+.|++++.+|.+|+||+|+|...   ...++++++.+.+
T Consensus        79 ~L~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~tpl~~A~~~---~~~~~l~~l~~~~  132 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVK-LLLSYGASRNAVNIFGLRPVDYTDDE---SMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCGGGGCCCH---HHHHHHSCC----
T ss_pred             HHHHHHHcCCHHHHH-HHHHcCCCCCCCCCCCCCHHHHHhhc---cHHHHHhhccccc
Confidence            999999999999985 55568999999999999999999866   4456666655544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.8e-24  Score=171.69  Aligned_cols=125  Identities=22%  Similarity=0.200  Sum_probs=115.0

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHH
Q 045346           55 DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV  134 (352)
Q Consensus        55 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~  134 (352)
                      ..|.||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++    .+.++|.+|.+|+||||+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHH
Confidence            57889999999999999999999999998 8889999999999999999999999999    788999999999999999


Q ss_pred             HHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcC
Q 045346          135 LAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFG  188 (352)
Q Consensus       135 A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g  188 (352)
                      |+..|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++++|.+.|
T Consensus        87 A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~---~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAE-VLLKHGADVNAQDKFGKTAFDISIGNGNE---DLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHC-
T ss_pred             HHHcCCHHHHH-HHHHcCCCCcCcCCCCCCHHHHHHHCCCH---HHHHHHHHcC
Confidence            99999999985 55568999999999999999999999765   8888887764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=5e-24  Score=166.04  Aligned_cols=126  Identities=29%  Similarity=0.309  Sum_probs=116.6

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHH
Q 045346           56 RKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL  135 (352)
Q Consensus        56 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (352)
                      +|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.+++.+++++|++    .+.+++.+|..|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHH
Confidence            5899999999999999999999999998 7889999999999999999999999999    6788999999999999999


Q ss_pred             HhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          136 AAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       136 ~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      +..++.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++++|.+.|++
T Consensus        76 ~~~~~~~~~~-~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~Gad  126 (126)
T 1n0r_A           76 ARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHTCC
T ss_pred             HHcChHHHHH-HHHHcCCCCcccCCCCCCHHHHHHHcCcH---HHHHHHHHcCCC
Confidence            9999999985 55568999999999999999999999665   899999988763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.2e-24  Score=190.23  Aligned_cols=142  Identities=21%  Similarity=0.141  Sum_probs=126.4

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccccc-CCCCchhH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD-NKGWNFLH   96 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   96 (352)
                      .+.+|.||||+|++.|+.++++.|++ +.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~  116 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBC-TTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            34578999999999999999999999 7777 8888 89999999999999999999999999999 5566 88999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCc
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL  176 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~  176 (352)
                      +|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..++                  +..+.||+|+|+..++  
T Consensus       117 ~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~--  172 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGL--  172 (244)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHH--
T ss_pred             HHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcCh--
Confidence            9999999999999999    789999999999999999986332                  2578999999999854  


Q ss_pred             HHHHHHHHHHcC
Q 045346          177 KEEIQKLSKDFG  188 (352)
Q Consensus       177 ~~~i~~~l~~~g  188 (352)
                       .+++++|.+.+
T Consensus       173 -~~iv~~L~~~~  183 (244)
T 3ui2_A          173 -EKVINVLEGQV  183 (244)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -HHHHHHHHHhc
Confidence             47888888753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=2.5e-25  Score=191.64  Aligned_cols=140  Identities=19%  Similarity=0.120  Sum_probs=102.3

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh-CCCccccccCCCCc
Q 045346           15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL-SPDCYELVDNKGWN   93 (352)
Q Consensus        15 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t   93 (352)
                      ++..|.+|.||||+|+..|+.++++.|++.+.++ +.+| ..|.||||+|+..|+.+++++|++. ++++ +.+|..|+|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLD-KAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-cccC-CCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            3455667888888888888888888888888777 7777 7888888888888888888888887 7776 778888888


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC
Q 045346           94 FLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN  162 (352)
Q Consensus        94 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g  162 (352)
                      |||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++.+++ +.+...|++.+..|.+|
T Consensus       143 pL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~~~~l-~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLA----KGARTDLRNIEKKLAFDMATNAACASLL-KKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHH----HTCCSCCCCTTSCCHHHHCCSHHHHHHH-C----------------
T ss_pred             HHHHHHHcCCHHHHHHHHH----cCCCCccccCCCCCHHHHhcchhHHHHH-HHHhccchhhhccchhh
Confidence            8888888888888888888    6788888888888888888888777776 44455777777766655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.2e-24  Score=168.14  Aligned_cols=111  Identities=17%  Similarity=0.073  Sum_probs=77.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHH
Q 045346           19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA   98 (352)
Q Consensus        19 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (352)
                      +..|.||||+|+..|+.++++.|++++.++ +.++ ..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTL-EGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCC-TTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            445667777777777777777777777665 6666 67777777777777777777777777766 66677777777777


Q ss_pred             HhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHH
Q 045346           99 MVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA  136 (352)
Q Consensus        99 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~  136 (352)
                      +..|+.+++++|++    .+.+++.+|.+|+||||+|+
T Consensus        81 ~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           81 VYEGHVSCVKLLLS----KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCC
T ss_pred             HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHhC
Confidence            77777777777777    56667777777777777763

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=3e-24  Score=174.56  Aligned_cols=134  Identities=15%  Similarity=0.091  Sum_probs=115.9

Q ss_pred             cccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCc
Q 045346           51 IANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT  130 (352)
Q Consensus        51 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T  130 (352)
                      ..+ +.|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+ +|+.+++++|++    .|.++|.+|.+|+|
T Consensus         7 ~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~t   79 (156)
T 1bi7_B            7 SSM-EPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLT   79 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCC
T ss_pred             CCC-ccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCc
Confidence            345 78999999999999999999999999998 888999999999985 899999999999    78899999999999


Q ss_pred             -HHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          131 -PLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       131 -~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                       |||+|+..|+.++++ +|.++|++++.+|.+|+||+|+|+..++.   +++++|.+.|+.+....
T Consensus        80 tpL~~A~~~~~~~~v~-~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLV-VLHRAGARLDVRDAWGRLPVDLAEELGHR---DVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             CHHHHHHHHTCHHHHH-HHHHHTCCSSCCCTTCCCHHHHHHHHTCH---HHHHHHSSCC-------
T ss_pred             HHHHHHHHCCCHHHHH-HHHHcCCCCcccCCCCCCHHHHHHHhCHH---HHHHHHHHcCCCCCccC
Confidence             999999999999985 55568999999999999999999999765   99999999988775543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=7.7e-24  Score=190.88  Aligned_cols=141  Identities=19%  Similarity=0.106  Sum_probs=118.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCcccc------ccCCCCCcHHHHHHhc---CcHHHHHHHHhhCCCccccccCCC
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNI------ANKDRKMTALHLAAGR---GHARTVETILSLSPDCYELVDNKG   91 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g   91 (352)
                      .+.++||.|+..|+.+.++.|++.+.++ +.      .+ ..|.||||+|+..   |+.+++++|+++++++ +.+|.+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSC-SCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccC-CCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            3457899999999999999999998887 44      46 7899999999997   8999999999999998 8889999


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhh
Q 045346           92 WNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSY  171 (352)
Q Consensus        92 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~  171 (352)
                      +||||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++.+++ .+|.+.|++      .|.||||+|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~~~iv-~~Ll~~ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLK----GRALVGTVNEAGETALDIARKKHHKECE-ELLEQAQAG------TFAFPLHVDYS  295 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH----TTCCCSCCCTTSCCHHHHHHHHTCHHHH-HHHHHHHHH------TTSSCCC----
T ss_pred             CCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHH-HHHHHhcCC------CCCChhHHHHh
Confidence            999999999999999999999    7889999999999999999999999888 455567765      68999999998


Q ss_pred             cCCC
Q 045346          172 GYPK  175 (352)
Q Consensus       172 ~~~~  175 (352)
                      .++.
T Consensus       296 ~g~~  299 (301)
T 2b0o_E          296 WVIS  299 (301)
T ss_dssp             ----
T ss_pred             cCCc
Confidence            7653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.4e-23  Score=163.45  Aligned_cols=111  Identities=18%  Similarity=0.090  Sum_probs=102.4

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHH
Q 045346           55 DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV  134 (352)
Q Consensus        55 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~  134 (352)
                      ..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|++    .+.++|.+|.+|+||||+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLS   79 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHH
Confidence            57889999999999999999999999998 8889999999999999999999999999    788999999999999999


Q ss_pred             HHhcCChHHHHHHHhhcCccccccccCCcchHHHHhh
Q 045346          135 LAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSY  171 (352)
Q Consensus       135 A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~  171 (352)
                      |+..++.++++ +|.+.|++++.+|.+|+||+|+|..
T Consensus        80 A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVK-LLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            99999999985 5556899999999999999999943

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=1.7e-24  Score=200.52  Aligned_cols=156  Identities=13%  Similarity=0.038  Sum_probs=125.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHhhcCCCcc--ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcc--ccccCCCC
Q 045346           17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS--NIANKDRKMTALHLAAGRGHARTVETILSLSPDCY--ELVDNKGW   92 (352)
Q Consensus        17 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~   92 (352)
                      ..+.+++||||+|++.|+.+++++|++++....  ...+ ..|.||||+|+.+|+.++|++|++++++..  +..+.+ +
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~-~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            345667899999999999999999999886321  1233 467899999999999999999999998631  222333 9


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCchhhhhhcc--CCCCCCcHHHHHH-hcCChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346           93 NFLHYAMVSFRVEQLTNLLENNPLARSLINE--GDAMENTPLHVLA-AVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus        93 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~--~d~~G~T~Lh~A~-~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      ||||+|+.+|+.+++++|++    .|.+++.  +|.+|+||||+|+ ..|+.++++.|+ +.|+       .|.||+++|
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~----~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll-~~ga-------~~~taL~~A  232 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCE----LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL-DCPV-------MLAYAEIHE  232 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH----SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT-TSHH-------HHHHHHHCT
T ss_pred             CHHHHHHHCCCHHHHHHHHH----cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHH-hCCC-------ccchHHHHH
Confidence            99999999999999999999    6677776  8889999999999 999999996555 4664       389999999


Q ss_pred             hhcCCCcHHHHHHHHHHcCC
Q 045346          170 SYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~g~  189 (352)
                      +..|+.   +++++|.+.|.
T Consensus       233 a~~g~~---evv~lL~~~ga  249 (376)
T 2aja_A          233 FEYGEK---YVNPFIARHVN  249 (376)
T ss_dssp             TTTTTT---THHHHHHHHHH
T ss_pred             HHCCCH---HHHHHHHhcCc
Confidence            999887   67777777553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=4.9e-23  Score=177.18  Aligned_cols=167  Identities=14%  Similarity=0.051  Sum_probs=126.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCC--------------CccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQ--------------SASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC   83 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~--------------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~   83 (352)
                      .|..++++.+++.+.|....+..+.+.+-              ...+..+ ..|.||||+|+..|+.++++.|++.++++
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   99 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA-ESIDNPLHEAAKRGNLSWLRECLDNRVGV   99 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHE-EEESCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccc-cccccccccccccCcHHHHHHHHhCCCCc
Confidence            35566777777777776543322221110              0012234 57899999999999999999999999998


Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCc
Q 045346           84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNV  163 (352)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~  163 (352)
                       +.+|..|+||||+|+.+|+.+++++|++.   .+.++|.+|.+|+||||+|+..|+.++++ +|.+.|++++.+|.+|+
T Consensus       100 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~A~~~~~~~~v~-~Ll~~ga~~~~~~~~g~  174 (222)
T 3ehr_A          100 -NGLDKAGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHAAAWKGYADIVQ-LLLAKGARTDLRNIEKK  174 (222)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHHHHHHTCHHHHH-HHHHHTCCSCCCCTTSC
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHHHHHcCCHHHHH-HHHHcCCCCccccCCCC
Confidence             88899999999999999999999999993   27899999999999999999999999985 55568999999999999


Q ss_pred             chHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          164 SVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      ||+|+|+..   ...++++.+.+.|..+..
T Consensus       175 t~l~~A~~~---~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          175 LAFDMATNA---ACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             CHHHHCCSH---HHHHHHC-----------
T ss_pred             CHHHHhcch---hHHHHHHHHhccchhhhc
Confidence            999999987   566888888887766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1e-23  Score=176.14  Aligned_cols=136  Identities=18%  Similarity=0.151  Sum_probs=114.2

Q ss_pred             HHcCCHHHHHHHhhcCCCcc----------ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 045346           30 AYYGNYGMVNLLLEIDQSAS----------NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM   99 (352)
Q Consensus        30 ~~~g~~~~v~~Ll~~~~~~~----------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (352)
                      ++.|..+.+++|++.+....          ...+ .+|.||||+|+..|+.++++.|++ +.++ +.+|.+|+||||+|+
T Consensus         8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHH-HHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHH
T ss_pred             HHhcCCchhHHHHHHhCCCCccccchhcccccCC-CCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHH
Confidence            34455566666665422211          1123 578999999999999999999999 8887 889999999999999


Q ss_pred             hcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcC
Q 045346          100 VSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGY  173 (352)
Q Consensus       100 ~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~  173 (352)
                      .+|+.+++++|++    .|.++|.+| .+|+||||+|+..|+.++++ +|.++|++++.+|.+|+||+|+|+..+
T Consensus        85 ~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~-~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A           85 GLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVE-ALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHTCHHHHHHHHH----TTCCTTCCCSSSSCCHHHHHHHTTCHHHHH-HHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHhcCcHHHHH-HHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            9999999999999    788999998 89999999999999999985 555689999999999999999998754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=5.3e-22  Score=183.20  Aligned_cols=148  Identities=14%  Similarity=0.061  Sum_probs=113.2

Q ss_pred             CCCCChHHHHHHHc-CCHHHHHHHhhcCCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           19 DQYGWTPIHYAAYY-GNYGMVNLLLEIDQSASNIANK-DRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        19 d~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      +..+.||||.|+.. |+.++++.|++++.++ +..+. ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            34567899999999 9999999999999988 55542 58999999999999999999999999998 889999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhh--cCccccccccCCcchHHHHhhc
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKK--TQANYDAVNKRNVSVRHIFSYG  172 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~--~g~~~~~~n~~g~Tpl~~a~~~  172 (352)
                      +|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++.++++.|+..  .+.+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~----~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLK----RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHH----CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999999999    7899999999999999999999999998655442  2244456677888999888654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=3.8e-21  Score=171.27  Aligned_cols=167  Identities=15%  Similarity=0.104  Sum_probs=136.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCC-------cc-------------cc-----cc----CCCCCcHHHHHHhcC
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQS-------AS-------------NI-----AN----KDRKMTALHLAAGRG   68 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------~~-------------~~-----~~----~~~g~tpLh~A~~~g   68 (352)
                      .|..+.++++.+...|+..+.+++...-+.       ..             +.     ..    .....++||.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            678899999999999997776665432111       10             00     00    011246899999999


Q ss_pred             cHHHHHHHHhhCCCcc-----ccccCCCCchhHHHHhc---CCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCC
Q 045346           69 HARTVETILSLSPDCY-----ELVDNKGWNFLHYAMVS---FRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRP  140 (352)
Q Consensus        69 ~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (352)
                      +.+.++.+++.++++.     +..|..|+||||+|+..   |+.+++++|++    .|+++|.+|.+|+||||+|+..|+
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999863     34588999999999999   89999999999    789999999999999999999999


Q ss_pred             hHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          141 KEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       141 ~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      .++++ +|.++|++++.+|.+|+||||+|+..++.   +++++|.+.|+++.
T Consensus       218 ~~~v~-~Ll~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          218 AECLK-LLLRGKASIEIANESGETPLDIAKRLKHE---HCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHTTCC
T ss_pred             HHHHH-HHHHcCCCCCCccCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence            99985 55569999999999999999999999765   89999999877643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=5.2e-22  Score=178.88  Aligned_cols=126  Identities=17%  Similarity=0.077  Sum_probs=107.6

Q ss_pred             HHHHHHHHhccccccc------cCCCCChHHHHHHHc---CCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHH
Q 045346            2 AALRKLVEEKKKMIKE------TDQYGWTPIHYAAYY---GNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHART   72 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~   72 (352)
                      +.+++++. .+.+++.      .|..|+||||+|+..   |+.+++++|+++++++ +.+| ..|.||||+|+..|+.++
T Consensus       165 ~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d-~~G~TpLh~A~~~g~~~~  241 (301)
T 2b0o_E          165 LSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKA-ADGNTALHYAALYNQPDC  241 (301)
T ss_dssp             HHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCC-TTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCC-CCCCCHHHHHHHcCCHHH
Confidence            45677774 7777887      689999999999997   8999999999999998 8888 899999999999999999


Q ss_pred             HHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCCh
Q 045346           73 VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPK  141 (352)
Q Consensus        73 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  141 (352)
                      +++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++    .+.+      .|+||||+|++.|+.
T Consensus       242 v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~----~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          242 LKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ----AQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH----HHHH------TTSSCCC--------
T ss_pred             HHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----hcCC------CCCChhHHHHhcCCc
Confidence            99999999998 8899999999999999999999999998    5554      589999999998853

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=2.2e-23  Score=182.31  Aligned_cols=142  Identities=16%  Similarity=0.069  Sum_probs=120.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHH
Q 045346           20 QYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAM   99 (352)
Q Consensus        20 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (352)
                      ..+.+++.+++..|+.+.++.+...+.+    .+ ..|.||||+|+..|+.++++.|++ +.++ +.+|.+|+||||+|+
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD----VV-SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   85 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH----HH-HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc----cc-cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence            3466777777777776665554443322    23 578999999999999999999999 8887 889999999999999


Q ss_pred             hcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcC
Q 045346          100 VSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGY  173 (352)
Q Consensus       100 ~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~  173 (352)
                      .+|+.+++++|++    .|.++|.+| .+|+||||+|+..|+.++++ +|.++|++++.+|.+|+||+|+|+..+
T Consensus        86 ~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A           86 GLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVE-ALVELGADIEVEDERGLTALELAREIL  155 (244)
T ss_dssp             HHTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTCCCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHHH
Confidence            9999999999999    788999998 88999999999999999985 555689999999999999999998653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=8e-22  Score=151.52  Aligned_cols=107  Identities=27%  Similarity=0.229  Sum_probs=52.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHH
Q 045346           18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHY   97 (352)
Q Consensus        18 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (352)
                      +|.+|+||||+|+..|+.++++.|++++.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCC-SSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            3445555555555555555555555554444 4444 44555555555555555555555555444 4444455555555


Q ss_pred             HHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcH
Q 045346           98 AMVSFRVEQLTNLLENNPLARSLINEGDAMENTP  131 (352)
Q Consensus        98 A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~  131 (352)
                      |+..++.+++++|++    .|+++|.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~----~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA----KGADVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHT----TSSSHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHH----cCCCCCcCCcccccc
Confidence            555555555555544    344444444444444

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=5e-23  Score=190.67  Aligned_cols=154  Identities=16%  Similarity=0.162  Sum_probs=119.9

Q ss_pred             HHHHHHHHhccc---cccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCc--cccccCCCCCcHHHHHHhcCcHHHHHHH
Q 045346            2 AALRKLVEEKKK---MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSA--SNIANKDRKMTALHLAAGRGHARTVETI   76 (352)
Q Consensus         2 e~v~~lL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~L   76 (352)
                      |+++.|++ .+.   ..+..|..|+||||+|++.|+.+++++|++++++.  .+..+ .+ .||||+|+.+|+.+++++|
T Consensus       106 e~v~~Ll~-~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~-~~-~TpLh~Aa~~G~~eiv~~L  182 (376)
T 2aja_A          106 SALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA-EN-YHAFRLAAENGHLHVLNRL  182 (376)
T ss_dssp             HHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH-HH-HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHH-cCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC-CC-CCHHHHHHHCCCHHHHHHH
Confidence            56777776 443   12344567889999999999999999999999752  13333 23 8999999999999999999


Q ss_pred             HhhCCCcccc--ccCCCCchhHHHH-hcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCc
Q 045346           77 LSLSPDCYEL--VDNKGWNFLHYAM-VSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQA  153 (352)
Q Consensus        77 l~~~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~  153 (352)
                      +++|+++ +.  .|.+|+||||+|+ .+|+.+++++|++    .|.       .|+||||+|+..|+.+++ ++|.+.|+
T Consensus       183 l~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~----~ga-------~~~taL~~Aa~~g~~evv-~lL~~~ga  249 (376)
T 2aja_A          183 CELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLD----CPV-------MLAYAEIHEFEYGEKYVN-PFIARHVN  249 (376)
T ss_dssp             HHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT----SHH-------HHHHHHHCTTTTTTTTHH-HHHHHHHH
T ss_pred             HHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHh----CCC-------ccchHHHHHHHCCCHHHH-HHHHhcCc
Confidence            9999987 54  7889999999999 9999999999998    443       289999999999999977 56666888


Q ss_pred             cccccccCCcchHHHHhhcCCC
Q 045346          154 NYDAVNKRNVSVRHIFSYGYPK  175 (352)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~  175 (352)
                      +++..+.    +++.|+..|+.
T Consensus       250 ~~~~~~~----~l~~A~~~g~~  267 (376)
T 2aja_A          250 RLKEMHD----AFKLSNPDGVF  267 (376)
T ss_dssp             HHHHHHT----TTTTTSSSSCC
T ss_pred             ccccccH----HHHHHHHCCCh
Confidence            7765543    45555554443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=2.2e-21  Score=172.79  Aligned_cols=126  Identities=17%  Similarity=0.181  Sum_probs=113.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCcc-----ccccCCCCCcHHHHHHhc---CcHHHHHHHHhhCCCccccccCCCCc
Q 045346           22 GWTPIHYAAYYGNYGMVNLLLEIDQSAS-----NIANKDRKMTALHLAAGR---GHARTVETILSLSPDCYELVDNKGWN   93 (352)
Q Consensus        22 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t   93 (352)
                      ..++||.|+..|+.+.++.+++.+.+..     +..+ ..|.||||+|+..   |+.+++++|+++|+++ +.+|.+|+|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~-~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccc-cCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence            4578999999999999999999988752     3346 7899999999999   8999999999999998 889999999


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcc
Q 045346           94 FLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus        94 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~  154 (352)
                      |||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+.++++ +|.+.|++
T Consensus       208 pLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~~v~-~Ll~~ga~  263 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKHEHCEE-LLTQALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHH----cCCCCCCccCCCCCHHHHHHHcCCHHHHH-HHHHcCCC
Confidence            9999999999999999999    78999999999999999999999999884 55556664

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=3.7e-21  Score=142.03  Aligned_cols=89  Identities=37%  Similarity=0.483  Sum_probs=61.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHh
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV  100 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (352)
                      +|+||||+|+..|+.+++++|++++.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            3667777777777777777777766666 6666 56777777777777777777777777666 6666677777777777


Q ss_pred             cCCHHHHHHHHh
Q 045346          101 SFRVEQLTNLLE  112 (352)
Q Consensus       101 ~~~~~~v~~Ll~  112 (352)
                      .|+.+++++|++
T Consensus        78 ~~~~~~~~~Ll~   89 (93)
T 1n0q_A           78 NGHLEVVKLLLE   89 (93)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            777777777666

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=5.7e-21  Score=141.04  Aligned_cols=93  Identities=32%  Similarity=0.359  Sum_probs=82.9

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHH
Q 045346           56 RKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL  135 (352)
Q Consensus        56 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (352)
                      +|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++    .|.+++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHH
Confidence            4889999999999999999999999998 8889999999999999999999999999    7888999999999999999


Q ss_pred             HhcCChHHHHHHHhhcCcc
Q 045346          136 AAVRPKEFHAVMIKKTQAN  154 (352)
Q Consensus       136 ~~~~~~~~~~~lL~~~g~~  154 (352)
                      +..|+.++++ +|.+.|++
T Consensus        76 ~~~~~~~~~~-~Ll~~ga~   93 (93)
T 1n0q_A           76 ARNGHLEVVK-LLLEAGAY   93 (93)
T ss_dssp             HHTTCHHHHH-HHHHTTCC
T ss_pred             HHcCCHHHHH-HHHHcCCC
Confidence            9999999885 45557764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=2.5e-21  Score=148.75  Aligned_cols=109  Identities=25%  Similarity=0.229  Sum_probs=99.2

Q ss_pred             cccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCc
Q 045346           51 IANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT  130 (352)
Q Consensus        51 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T  130 (352)
                      .+| .+|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++.+++++|++    .+.+++.+|.+|+|
T Consensus         4 ~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGS-KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNT   77 (115)
T ss_dssp             CCS-CSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCC
T ss_pred             ccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCC
Confidence            356 79999999999999999999999999998 8889999999999999999999999999    78899999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhcCccccccccCCcchH
Q 045346          131 PLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVR  166 (352)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl  166 (352)
                      |||+|+..++.+++ ++|.++|++++.++..|.||-
T Consensus        78 pl~~A~~~~~~~~~-~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIV-KLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHH-HHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHHCCCHHHH-HHHHHcCCCCCcCCccccccc
Confidence            99999999999998 556679999999999999885

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=5.5e-20  Score=169.66  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=113.9

Q ss_pred             CCCCcHHHHHHhc-CcHHHHHHHHhhCCCcccccc--CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcH
Q 045346           55 DRKMTALHLAAGR-GHARTVETILSLSPDCYELVD--NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP  131 (352)
Q Consensus        55 ~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~  131 (352)
                      ..+.||||.|+.. |+.++++.|++.++++ +..|  ..|+||||+|+..|+.+++++|++    .|+++|.+|.+|+||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGP  271 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCH
Confidence            3456899999999 9999999999999998 6677  899999999999999999999999    789999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCC
Q 045346          132 LHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       132 Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~  189 (352)
                      ||+|+..|+.++++ +|.+.|++++.+|.+|.||||+|+..++.   +++++|+..+.
T Consensus       272 Lh~A~~~g~~~~v~-~LL~~Gad~~~~d~~G~TpL~~A~~~g~~---~iv~lLl~~~~  325 (368)
T 3jue_A          272 LHHATILGHTGLAC-LFLKRGADLGARDSEGRDPLTIAMETANA---DIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHH-HHHHCcCCCCCcCCCCCCHHHHHHHCCCH---HHHHHHHHcCC
Confidence            99999999999884 55568999999999999999999999766   78888877653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=5.1e-19  Score=134.81  Aligned_cols=96  Identities=20%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCC
Q 045346           12 KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKG   91 (352)
Q Consensus        12 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g   91 (352)
                      +......|.+|+||||+|+..|+.+++++|++++.++ +.+| ..|.||||+|+..|+.+++++|+++++++ +.+|..|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g   90 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFG   90 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCC
Confidence            3445667778888888888888888888888887776 7777 68888888888888888888888888877 7778888


Q ss_pred             CchhHHHHhcCCHHHHHHH
Q 045346           92 WNFLHYAMVSFRVEQLTNL  110 (352)
Q Consensus        92 ~t~Lh~A~~~~~~~~v~~L  110 (352)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            8888888888888877765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=9.3e-18  Score=127.77  Aligned_cols=90  Identities=20%  Similarity=0.190  Sum_probs=78.0

Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCC
Q 045346           50 NIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN  129 (352)
Q Consensus        50 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~  129 (352)
                      ...+ .+|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+|+.+++++|++    .|.+++.+|.+|+
T Consensus        18 ~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~   91 (110)
T 2zgd_A           18 SHMG-SDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFGK   91 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred             cccC-CccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCCC
Confidence            4455 78899999999999999999999999888 7788999999999999999999999998    6788999999999


Q ss_pred             cHHHHHHhcCChHHHH
Q 045346          130 TPLHVLAAVRPKEFHA  145 (352)
Q Consensus       130 T~Lh~A~~~~~~~~~~  145 (352)
                      ||||+|+..|+.++++
T Consensus        92 tpl~~A~~~~~~~~~~  107 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAE  107 (110)
T ss_dssp             CHHHHHHHHTCHHHHH
T ss_pred             cHHHHHHHcCCHHHHH
Confidence            9999999999888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 6e-12
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 24  TPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLSPD 82
           TP+H A++ G+  +V  LL+  + AS N++N     T LH+AA  GH    + +L     
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 83  CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNP 115
                       LH A        +  LLENN 
Sbjct: 59  V-NAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-10
 Identities = 37/189 (19%), Positives = 59/189 (31%), Gaps = 39/189 (20%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
              ++    TP+H AA  G+  +   LL+      N   KD   T LH AA  GH   V+
Sbjct: 26  PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKD-DQTPLHCAARIGHTNMVK 83

Query: 75  TILSLSPD--------------------------------CYELVDNKGWNFLHYAMVSF 102
            +L  + +                                    +  KG+  LH A    
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 103 RVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
           +V     LLE +    +  N       TPLH +A          ++     +  +     
Sbjct: 144 KVRVAELLLERD----AHPNAAGKNGLTPLH-VAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 163 VSVRHIFSY 171
            +  HI + 
Sbjct: 199 YTPLHIAAK 207

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 13/166 (7%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
                ++ G TP+H  A  G+  + ++L++        A      T LH+A+  G+ + V
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTRMGYTPLHVASHYGNIKLV 313

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
           + +L             G++ LH A      + +T LL+N     +  NE  +   TPL 
Sbjct: 314 KFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLA 368

Query: 134 VLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEE 179
            +A    +  +  +    +   D  +   VS +H  S  +P+  +E
Sbjct: 369 -IAK---RLGYISVTDVLKVVTDETSFVLVSDKHRMS--FPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
           +L+ E+        + G TP+H A ++ N  +V LL  + +  S  +      T LH+AA
Sbjct: 149 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL--LPRGGSPHSPAWNGYTPLHIAA 206

Query: 66  GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
            +       ++L            +G   LH A      E    ++      ++  N G+
Sbjct: 207 KQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAE----MVALLLSKQANGNLGN 261

Query: 126 AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSK 185
               TPLH++A         V+IK      DA  +   +  H+ S+       +     +
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 186 DFGRGQYSNG 195
                +   G
Sbjct: 321 ADVNAKTKLG 330

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLA 64
           K + + +  +    + G++P+H AA  G+  +V LLL+    AS N  + D   T L +A
Sbjct: 314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--NGASPNEVSSDGT-TPLAIA 370

Query: 65  AGRGHARTVETILSLS 80
              G+    + +  ++
Sbjct: 371 KRLGYISVTDVLKVVT 386

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 58  MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
           +T LH+A+  GH   V+ +L        + + K    LH A  +   E    LL+N    
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK--- 56

Query: 118 RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKK 150
            + +N     + TPLH  A +       ++++ 
Sbjct: 57  -AKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 4e-11
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETIL 77
            + G T +H A  + +   ++ LL        +  ++    TALHLAA  G A TVE + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG------DAMENTP 131
           + +     + +  G   LH A           LL+  P      ++       D   +T 
Sbjct: 66  A-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 132 LHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
               A             + +     +   N
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 9   EEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGR 67
           +    + K     G TP+H A       ++ LLL+    A           T L  A  R
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--AGADPTARMYG-GRTPLGSALLR 235

Query: 68  GHARTVETILS 78
            +      + +
Sbjct: 236 PNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 24/166 (14%), Positives = 38/166 (22%), Gaps = 11/166 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
           +   +  G T +H AA  G    V  L                    HLA          
Sbjct: 38  LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL--HLACRVRAHTCAC 95

Query: 75  TILSLSPDCYE---------LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
            +L   P               D         A V  +          +   R  +   +
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 126 AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSY 171
              +TPLHV    +  E   ++                +  H+   
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 2/117 (1%)

Query: 1   DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MT 59
            A   +  ++      +           AA  G    ++ L  +  S   +     +   
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 60  ALHLAAGRGHARTVETILSLSPDC-YELVDNKGWNFLHYAMVSFRVEQLTNLLENNP 115
           A  LAA  GH   +  +  L+P     ++  + ++    A  +  +  L  L E  P
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 3/81 (3%)

Query: 2   AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE---IDQSASNIANKDRKM 58
           +    + +   K       Y    +           +  LL    I   A          
Sbjct: 259 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 318

Query: 59  TALHLAAGRGHARTVETILSL 79
             L LA   G+      +LS+
Sbjct: 319 ELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (120), Expect = 9e-08
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 5/166 (3%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
            L+    +++K      +     AA  G+  ++N L E+  +      +     A  LAA
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 169

Query: 66  GRGHARTVETILSLSPDC--YELVDNKGWNFLHYAMVSFRVEQLTNLLENNP---LARSL 120
             GH   +  +  L+P      +     + F   A+       +  LL+       A   
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 229

Query: 121 INEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVR 166
             E       P       R KE H             +  ++  ++
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 1   DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MT 59
           D  +  +V+++ + I+       +  +         ++  L      A+ +  +D    T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 60  ALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYA 98
            L++AA  G+   V+ +L    D   + +  G   + + 
Sbjct: 262 CLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 21/149 (14%), Positives = 38/149 (25%), Gaps = 1/149 (0%)

Query: 1   DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTA 60
              +   +                   + ++      VN      Q   NI   +   T 
Sbjct: 51  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 110

Query: 61  LHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSL 120
           LH      +   V+ ++    +     DN G + L  A+ S                   
Sbjct: 111 LHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 121 INEGDAMENTPLHVLAAVRPKEFHAVMIK 149
           +   D+M  T LH +         +   K
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAK 198

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 2   AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTA 60
                L      M+   D  G T ++ AA  GN  +V+ LL+    A   IANK   +  
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGADPFIANKS-GLRP 295

Query: 61  LHLAAG 66
           +   AG
Sbjct: 296 VDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 15/156 (9%)

Query: 19  DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGR---GHARTVET 75
           D++G TP+H+     N  +V  L++    ++ +   +   + L  A        + T E 
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVK--HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 76  ILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNP---------LARSLINEGDA 126
           +L     C  L D+     LH+ +++  +   +   +                 I  G  
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 127 MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN 162
            + +  +     R       +  K       +N ++
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANM-LNAQD 256

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
            L++ +   K +   TDQ   T +H+A   G+  +V  LL++    ++  +       + 
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
                     +   L         V+  G   LHYA    R E    LLE      +  +
Sbjct: 78  ---ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPD 130

Query: 123 EGDAMENTPLH 133
             D  E T +H
Sbjct: 131 AKDHYEATAMH 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 26  IHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYE 85
           +   AY G    +   +  D+S +   ++D + TALH A   GH   VE +         
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFL-LQLGVPVN 64

Query: 86  LVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHA 145
             D+ GW+ LH A  + R E +  LL         +N  +    TPLH  A+    E   
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGA----QVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 146 VMIKKTQANYDAVNKRNVSVRHIFSY 171
           ++++   AN DA +    +  H  + 
Sbjct: 121 MLLEG-GANPDAKDHYEATAMHRAAA 145

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
                D  G TP+H A          LL+    S   I NK+ K T L +A G G    +
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEK-TPLQVAKG-GLGLIL 217

Query: 74  ETIL 77
           + ++
Sbjct: 218 KRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
               D Y  T +H AA  GN  M+++LL    S           T LHLA         +
Sbjct: 129 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST--NIQDTEGNTPLHLACDEERVEEAK 186

Query: 75  TILSLSPDCYELVDNKGWNFLHYA 98
            ++S       + + +    L  A
Sbjct: 187 LLVSQGASI-YIENKEEKTPLQVA 209

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 2e-09
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 13  KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD--RKMTALHLAAGRGHA 70
           +  +   + G T +  AA  G+  ++ +LL+   +  N  +      +    L++     
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 71  RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENT 130
             +  +L        +   +G   L  A+    +  +  LLE   +    IN+ D+   T
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKT 255

Query: 131 PLHVLAAVRPKEFHAVMIKKTQANYDAVN 159
            L +   ++ K+   ++ K+  A+ D  +
Sbjct: 256 ALLLAVELKLKKIAELLCKR-GASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 4e-09
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNI--------ANKDRKMTAL 61
            K   + E D YG+T    AA YG    +  L +   + +            +    TAL
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 62  HLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLI 121
             AA +GH   ++ +L          DN G N L +A++S     +  +        + +
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 122 NEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI 168
           N       TPL +    +       ++++     +  +    +   +
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 33/154 (21%), Positives = 47/154 (30%), Gaps = 9/154 (5%)

Query: 24  TPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHARTVETILSLSPD 82
             +  A    +  +V  LLE    A+ N   ++   T LH A        VE +L    D
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 83  CYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKE 142
                 N    FL  A+            +      + +NE D    T     AAV  K 
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLL-----KLFLSKGADVNECDFYGFTAFME-AAVYGKV 118

Query: 143 FHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL 176
                + K  AN +   K       +   G   L
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 9/183 (4%)

Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
            +++L+E    +  + ++ GWTP+H A       +V LLL                    
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF--L 77

Query: 63  LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLIN 122
           LAA  G  + ++  LS   D  E  D  G+     A V  +V+ L  L +          
Sbjct: 78  LAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 123 EGDAME------NTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKL 176
             +  E       T L   A     E   +++ +  A+ +A +    +            
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 177 KEE 179
             E
Sbjct: 197 DVE 199

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 4   LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
           +++L+E++   I +TD  G T +  A       +  LL +
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAAGRGHART 72
              + D+ G TPI  AA  G   +V  L++  Q AS    +     TA  LA    H   
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ--QGASVEAVDATDH-TARQLAQANNHHNI 269

Query: 73  VETIL 77
           V+   
Sbjct: 270 VDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
                  G T +HYAA   N  +V  L+    S  +  ++D   T + LAA  G    V 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVM 238

Query: 75  TILSLSPDCYELVDNKGWNFLHYA 98
            ++       E VD         A
Sbjct: 239 YLIQQGASV-EAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 24  TPIH-YAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPD 82
           +PI  +    G+Y +   +        NI +     T LH  A    A   E ++     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 83  CY-------ELVDNKGWNFLHYAMVSFRVEQ 106
                      +D      L  A+++ R   
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 4/29 (13%), Positives = 11/29 (37%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
           ++  D    T    A    ++ +V++   
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 58  MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
            TALH AA   +   V+ ++       +  D  G   +  A    R+E +  L++     
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--- 244

Query: 118 RSLINEGDAMENTPLHV 134
            + +   DA ++T   +
Sbjct: 245 -ASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 1  DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE------IDQSASNIANK 54
           A    +  E   +I    ++  T +H+ A   +      L+       I   A ++   
Sbjct: 14 YAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAM 70

Query: 55 DRK-MTALH 62
          D    T L 
Sbjct: 71 DCDENTPLM 79

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 10  EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
                     + G T +H AA  G   ++ LL  I              T LH AA  G 
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 70  ARTVETILSLSPDCYELVDNKGWNFLHYA 98
                 ++    D  E V+  G      A
Sbjct: 245 EEACRILVENLCD-MEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-NIANKDRKMTALHLAA 65
           +   D  GWTP+H AA++G      +L+E          NK  + TA  +A 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQ-TAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 7/146 (4%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLA 64
            + +EE  +                            L           K    TALH+A
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS-GGTALHVA 206

Query: 65  AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG 124
           A +G+   ++ ++    D   + D  GW  LH A    + E    L+EN       +   
Sbjct: 207 AAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAV 261

Query: 125 DAMENTPLHVLAAVRPKEFHAVMIKK 150
           + +  T    +A      +   + KK
Sbjct: 262 NKVGQTAFD-VADEDILGYLEELQKK 286

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 1/125 (0%)

Query: 24  TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
            P+H A     +  V  LL    S     ++D     LH +           +LS   + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 84  YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF 143
                     +  + +              +   +  +N+      T LH+    +  E 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 144 HAVMI 148
              +I
Sbjct: 121 SQFLI 125

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
            +   D+ GWTP+ +A   G+     LL+E   +  ++ +      A  +A    + +  
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVK 219

Query: 74  ETILS 78
           +  L+
Sbjct: 220 KFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 38/201 (18%)

Query: 3   ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGN---------------------------- 34
            +++L+  K  ++ + DQ G  P+H++  +                              
Sbjct: 15  KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 74

Query: 35  -------YGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELV 87
                     V   L       ++     +       A       V   L  +     + 
Sbjct: 75  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 134

Query: 88  DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVM 147
           D      LH A     ++ +  L        S +N  D    TPL    A    +   ++
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 148 IKKTQANYDAVNKRNVSVRHI 168
           ++K  A YD V+ +      +
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
            ++  D++   P+H AA  G+  ++ LL  + +SA N  +K +  T L  A   GH    
Sbjct: 130 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAA 188

Query: 74  ETILSLSPDCYELVDNKGWNFLHYAM 99
             ++      Y+LVDNKG      A+
Sbjct: 189 VLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 5e-06
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
           +  +    G T +H A    N  +V+LLL     A       +  +   L  GR   R  
Sbjct: 137 VNAQEPCNGRTALHLAVDLQNPDLVSLLL--KCGADVNRVTYQGYSPYQLTWGRPSTRIQ 194

Query: 74  ETILSLSPDCYELVDNK 90
           + +  L+ +  +++   
Sbjct: 195 QQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 22 GWTPIHYAAYYGNYGMVNLLLE--IDQSAS-NIANKDRKMTALHLA 64
          G + +H A  +    +   ++       A  N  N   + T LHLA
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query: 58 MTALHLAAGRGHARTVETILSLSPDCYELV---DNKGWNFLHYAM 99
           + LHLA           ++         +   +N     LH A+
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV 47

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 23/182 (12%), Positives = 63/182 (34%), Gaps = 2/182 (1%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
           + V+     +   +    TP+H A       +   LL           +      L    
Sbjct: 23  RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 82

Query: 66  GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD 125
           G   +  V T    +P  + ++    +N      ++     L  +     L   +  +  
Sbjct: 83  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 142

Query: 126 AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FSYGYPKLKEEIQKLS 184
               T LH+   ++  +  ++++K   A+ + V  +  S   + +     ++++++ +L+
Sbjct: 143 CNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

Query: 185 KD 186
            +
Sbjct: 202 LE 203

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
           +L+ +    +      G + +H A+  G   +V  L+     + ++ N     T L +A 
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHND-TPLMVAR 218

Query: 66  GRGHARTV 73
            R     +
Sbjct: 219 SRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSAS---NIANKDRKMTALHLA 64
          G TP+H A   GN   V+ L+ + Q      +I N   + T LHLA
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 58 MTALHLAAGRGHARTVETILSLSPDC---YELVDNKGWNFLHYAM 99
           T LH+A  +G+   V  +++L        ++ +N     LH A+
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 5   RKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLA 64
           + L+E    +     + G +P+ +A    +  MV LLL+   + +           LH A
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA--LHSA 184

Query: 65  AGRGHARTVETILSLSPDCYELVDNKGWNFLHYA 98
           +GRG    V T++    D   L +      L  A
Sbjct: 185 SGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVA 217

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 15/138 (10%)

Query: 2   AALRKLVEE-----KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR 56
             L +   +     +K  +    +   T +H A    +   ++++  + Q++ N+  +  
Sbjct: 20  FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG 79

Query: 57  KMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
           K +                +L       E+ +  G   L  A                  
Sbjct: 80  KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH----------C 129

Query: 117 ARSLINEGDAMENTPLHV 134
              L        N+ +HV
Sbjct: 130 EELLTQALSGRFNSHVHV 147

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
           +   D  G TP+  A   G   +V++L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
            +   D  G  PIH A   G+  +V+      +S  +  +    +T L LA  RG    V
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSF--LAAESDLHRRDAR-GLTPLELALQRGAQDLV 149

Query: 74  ETILS 78
           + +  
Sbjct: 150 DILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
            +   +  G T    A  YG   +V+L+  
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 10/180 (5%)

Query: 4   LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
           +  L+ +  ++    D+ G T +H AA +        LL+    A++  N  R      +
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 64  AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
           AA             +         N   +     ++      +  ++E+   A + IN 
Sbjct: 65  AADAMGVFQ------ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL 183
            D    T LH          +   +     ++   + ++            +   E  K 
Sbjct: 119 ADNSGKTALH----WAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 18  TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
            D    TP+  AA  G+Y     LL+   +   I +         +A+ R H   V 
Sbjct: 152 QDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHM-DRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGMVNLL 41
            + TD     P   A+   ++ +V LL
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRLL 208

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 6   KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLL 41
           +L+ +    +    ++  T    +   GN  +  +L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 14  MIKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
            +   D +G  P+  A   G+  +   L  
Sbjct: 94  RLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-31  Score=225.72  Aligned_cols=183  Identities=25%  Similarity=0.290  Sum_probs=166.5

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.++++++..+.+++.+|..|+||||+|+..|+.+++++|++.+... ...+ ..+.++++.++..|+.+++++|+++++
T Consensus        17 ~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~Ll~~~~   94 (223)
T d1uoha_          17 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKD-DAGWSPLHIAASAGRDEIVKALLGKGA   94 (223)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-cccc-ccccccccccccccccchhHHHhccCc
Confidence            67899999999999999999999999999999999999999988777 5555 688999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +..|.+|+||||+|+.+|+.+++++|++    .|.+++.+|.+|.||||+|+..++.+.. ++|.+.+.+++.+|.+
T Consensus        95 d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~----~g~d~~~~~~~~~t~L~~a~~~~~~~~~-~~L~~~~~~i~~~d~~  168 (223)
T d1uoha_          95 QV-NAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTE  168 (223)
T ss_dssp             CT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCSCCCCTT
T ss_pred             ee-EeeCCCCCchhhHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCccchhhhhcCCcchh-hhhccccceeeeccCC
Confidence            88 8899999999999999999999999998    7888999999999999999999988877 5666799999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCcc
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSNG  195 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~~  195 (352)
                      |+||||+|+..++.   +++++|.+.|+++....
T Consensus       169 g~TpL~~Aa~~g~~---~~v~~LL~~Gad~~~~d  199 (223)
T d1uoha_         169 GNTPLHLACDEERV---EEAKLLVSQGASIYIEN  199 (223)
T ss_dssp             CCCHHHHHHHTTCH---HHHHHHHHTTCCSCCCC
T ss_pred             CCceeccccccCcH---HHHHHHHHCCCCCCCCC
Confidence            99999999999765   89999999988876543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-30  Score=226.10  Aligned_cols=179  Identities=21%  Similarity=0.193  Sum_probs=148.1

Q ss_pred             HHHHHHHHhc--cccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhh
Q 045346            2 AALRKLVEEK--KKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL   79 (352)
Q Consensus         2 e~v~~lL~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   79 (352)
                      ++++.|++..  +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+| .+|.||||+|+..|+.++++.|++.
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~~  100 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAE-RGGHTALHLACRVRAHTCACVLLQP  100 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCC-TTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccc-cccchhhhhhhccCchHHHHHHHhh
Confidence            5677777632  2337788899999999999999999999999999888 8888 7999999999999999999998764


Q ss_pred             CCCc----------------------------------------------cccccCCCCchhHHHHhcCCHHHHHHHHhc
Q 045346           80 SPDC----------------------------------------------YELVDNKGWNFLHYAMVSFRVEQLTNLLEN  113 (352)
Q Consensus        80 ~~~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  113 (352)
                      ....                                              .+.+|.+|+||||+|+++++.+++++|++ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~-  179 (255)
T d1oy3d_         101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-  179 (255)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             ccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc-
Confidence            3221                                              12357789999999999999999999998 


Q ss_pred             Cchhhhhhcc-CCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          114 NPLARSLINE-GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       114 ~~~~~~~~n~-~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                         .+.+.+. ++..|+||||+|++.|+.++++ +|.++|++++.+|++|+||||+|+..++.   +++++|.+.|+.
T Consensus       180 ---~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~-~Ll~~gadin~~d~~g~t~L~~A~~~~~~---~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         180 ---AGADLNKPEPTCGRTPLHLAVEAQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNP---ILARLLRAHGAP  250 (255)
T ss_dssp             ---HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHTSSCH---HHHHHHHHTTCC
T ss_pred             ---ccccccccccccccccccccccccHHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHCCCH---HHHHHHHHcCCC
Confidence               4555554 4678999999999999999885 55568999999999999999999999665   899999999884

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=217.60  Aligned_cols=178  Identities=18%  Similarity=0.230  Sum_probs=135.1

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCcc--ccccCCCCCcHHHHHHhc------------
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS--NIANKDRKMTALHLAAGR------------   67 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~g~tpLh~A~~~------------   67 (352)
                      +.+++|++.++.+++.+|.+|+||||+|+..|+.+++++|+++++++.  +..+ ..|.+|+|+++..            
T Consensus        14 ~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          14 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccc-ccccccccccccccccccccccccc
Confidence            678999999999999999999999999999999999999999887651  2233 4566666666644            


Q ss_pred             -----------------------CcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccC
Q 045346           68 -----------------------GHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEG  124 (352)
Q Consensus        68 -----------------------g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~  124 (352)
                                             ++.++++.|++.+.+. ...|.+|+||||+|+.+|+.++++.|++..   +.++|.+
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~---~~~in~~  168 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLG---KSAVNWQ  168 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTT---CCCSCCC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccc---ccccccc
Confidence                                   4455555555555554 556777888888888888888888887732   2567788


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          125 DAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       125 d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      |.+|+||||+|+..|+.++++.|+.+.|++++.+|++|+||||+|+.      .+++++|.+.|.+
T Consensus       169 d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN------EQVKKFFLNNVVD  228 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC------HHHHHHHHHHCCC
T ss_pred             ccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh------HHHHHHHHHcCCC
Confidence            88888888888888888887666666688888888888888888753      2677787777764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-28  Score=213.62  Aligned_cols=173  Identities=22%  Similarity=0.223  Sum_probs=148.6

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHhhcCCCc--cccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCc
Q 045346           16 KETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSA--SNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWN   93 (352)
Q Consensus        16 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t   93 (352)
                      +..|++|+||||+|++.|+.+++++|++++++.  .+.++ ..|.||||+|+..|+.+++++|+++|+++ +..|.+|+|
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~t   80 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcC-CCCCCccchHHhhcccccccccccccccc-cccccccch
Confidence            467899999999999999999999999987653  35677 78999999999999999999999999998 889999999


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCc-------------------------------------------hhhhhhccCCCCCCc
Q 045346           94 FLHYAMVSFRVEQLTNLLENNP-------------------------------------------LARSLINEGDAMENT  130 (352)
Q Consensus        94 ~Lh~A~~~~~~~~v~~Ll~~~~-------------------------------------------~~~~~~n~~d~~G~T  130 (352)
                      |||+|+..++.++++.|++...                                           ..+..++.+|.+|+|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            9999999999999999875321                                           024567788999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhcCccccc-cccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          131 PLHVLAAVRPKEFHAVMIKKTQANYDA-VNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~g~~~~~-~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      |||+|+..++.++++ +|.+.+++.+. .+..|.||||+|+..++.   +++++|.+.|+.+...
T Consensus       161 pLh~A~~~~~~~~v~-~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~---~~v~~Ll~~gadin~~  221 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAA---SVLELLLKAGADPTAR  221 (255)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHTCCTTCCCTTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTTCC
T ss_pred             ccccccccccccccc-chhcccccccccccccccccccccccccHH---HHHHHHHHCCCCCCCC
Confidence            999999999999985 55567888775 567899999999999765   8999999988776543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=210.08  Aligned_cols=172  Identities=23%  Similarity=0.238  Sum_probs=153.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.++. .+......+..+.++++.++..|+.+++++|++++.++ +.+| .+|.||||+|+..|+.+++++|+++|.
T Consensus        51 e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d-~~g~tpL~~A~~~~~~e~~~~Ll~~g~  127 (223)
T d1uoha_          51 EIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVN-QNGCTPLHYAASKNRHEIAVMLLEGGA  127 (223)
T ss_dssp             HHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cccccccc-cccccccccccccccccccccccccchhHHHhccCcee-EeeC-CCCCchhhHHHHcCCHHHHHHHHHCCC
Confidence            55665555 66677888889999999999999999999999999887 8888 899999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKR  161 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~  161 (352)
                      ++ +.+|.+|.||||+|+..++.+++++|.+    .+.++|.+|.+|+||||+|++.|+.++++.| .+.|+|++.+|++
T Consensus       128 d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~----~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~L-L~~Gad~~~~d~~  201 (223)
T d1uoha_         128 NP-DAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQDTEGNTPLHLACDEERVEEAKLL-VSQGASIYIENKE  201 (223)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH-HHTTCCSCCCCTT
T ss_pred             CC-CCcCCCCCccchhhhhcCCcchhhhhcc----ccceeeeccCCCCceeccccccCcHHHHHHH-HHCCCCCCCCCCC
Confidence            98 8899999999999999999999999988    7788999999999999999999999999554 5689999999999


Q ss_pred             CcchHHHHhhcCCCcHHHHHHHHHH
Q 045346          162 NVSVRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (352)
                      |+||+|+|. .   ...++++.|.+
T Consensus       202 g~tpl~~A~-~---~~~~i~~~Ll~  222 (223)
T d1uoha_         202 EKTPLQVAK-G---GLGLILKRMVE  222 (223)
T ss_dssp             SCCHHHHCC-T---THHHHHHHHHC
T ss_pred             CCCHHHHHH-C---CCHHHHhcccC
Confidence            999999984 3   34467777654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.4e-28  Score=207.60  Aligned_cols=171  Identities=23%  Similarity=0.273  Sum_probs=147.2

Q ss_pred             HHHHHHHHhccccccc-cCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcH----------
Q 045346            2 AALRKLVEEKKKMIKE-TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHA----------   70 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----------   70 (352)
                      |+|+.|++ +|.++|. .|.+|+||||+||+.|+.+++++|++.++++ +.++ ..+.++++.++..++.          
T Consensus         3 ~~v~~Ll~-~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQD-NTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHH-CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-cccc-cccccccccccccccccccccccccc
Confidence            67777777 7788987 5999999999999999999999999999988 7777 7888888888855443          


Q ss_pred             ------------------------HHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCC
Q 045346           71 ------------------------RTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDA  126 (352)
Q Consensus        71 ------------------------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~  126 (352)
                                              ...+.|...+.++ +.++..|+||||.++.+++.++++.+++    .+.++|.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~----~~~~~~~~d~  154 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM----HHANRDAQDD  154 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc----cccccccccc
Confidence                                    3455556666665 6788999999999999999999999999    6778999999


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHH
Q 045346          127 MENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLS  184 (352)
Q Consensus       127 ~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l  184 (352)
                      +|+||||+|+..|+.++++ +|.+.|+|++.+|.+|+||+|+|+.+++.   +++++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~-~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~---~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASK-ALLDNFANREITDHMDRLPRDVASERLHH---DIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHH
T ss_pred             ccccccchhccccHHHHHH-HHHHCCCCCCCcCCCCCCHHHHHHHcCCH---HHHhhc
Confidence            9999999999999999995 55569999999999999999999999776   777765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.2e-28  Score=206.29  Aligned_cols=172  Identities=17%  Similarity=0.180  Sum_probs=148.4

Q ss_pred             HhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCc-----
Q 045346            9 EEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC-----   83 (352)
Q Consensus         9 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-----   83 (352)
                      ...+.++|.+|.+|+||||+|+..|+.+++++|+++|+++ +.+| ..|.||||+|+..|+.++++.|++.+...     
T Consensus        26 ~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d-~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (221)
T d1iknd_          26 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  103 (221)
T ss_dssp             ---CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCC-TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HhCCCCcccCCCCCCccccccccccccccccccccccccc-cccc-cccccccccccccccccccchhhhhccccccccc
Confidence            3467889999999999999999999999999999999998 8888 89999999999999999999999876543     


Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCC-CCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCC
Q 045346           84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGD-AMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRN  162 (352)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g  162 (352)
                      .......|.||||.|+..++.+.++++++    .+..++.++ .+|+||||+|++.|+.++++ +|.++|+|++.+|.+|
T Consensus       104 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~----~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~-~Ll~~gad~~~~~~~G  178 (221)
T d1iknd_         104 LKATNYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQG  178 (221)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH-HHHTTTCCSCCCCTTC
T ss_pred             ccccccccchhhhHHhhcCChhheeeecc----cCcccccccccCCCCccccccccccHHHHH-HHHhcCCcccccCCCC
Confidence            23345678999999999999999999998    666677665 67999999999999999995 5557999999999999


Q ss_pred             cchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          163 VSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      +||+|+|+..++.   ++++++.+.+..
T Consensus       179 ~tpl~~A~~~~~~---~~~~~l~~~~~~  203 (221)
T d1iknd_         179 YSPYQLTWGRPST---RIQQQLGQLTLE  203 (221)
T ss_dssp             CCGGGGCTTSSCH---HHHHHHHTTSCG
T ss_pred             CCHHHHHHHCCCH---HHHHHHHHcCCc
Confidence            9999999998655   888888776544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=192.94  Aligned_cols=154  Identities=23%  Similarity=0.249  Sum_probs=142.2

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      +|||+||..|+.++++.|+++|+++ +.+| .+|.||||+|+ .|+.++++.|+++++++ +..+.+|.++++.++.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d-~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQN-GFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCC-TTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccC-Ccccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            8999999999999999999999998 8899 89999999886 78999999999999998 8889999999999999999


Q ss_pred             HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHH
Q 045346          104 VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL  183 (352)
Q Consensus       104 ~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (352)
                      .+.++.+++    .+..++..|..|.+|||+|+..++.+.+..++...+.+.+.+|++|+||+|+|+..++.   +++++
T Consensus        79 ~~~~~~l~~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~---~iv~~  151 (156)
T d1ihba_          79 LDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN---EVVSL  151 (156)
T ss_dssp             HHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH---HHHHH
T ss_pred             ccccccccc----ccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH---HHHHH
Confidence            999999998    66778999999999999999999999997777766669999999999999999999765   88999


Q ss_pred             HHHcC
Q 045346          184 SKDFG  188 (352)
Q Consensus       184 l~~~g  188 (352)
                      |.++|
T Consensus       152 Ll~~G  156 (156)
T d1ihba_         152 MQANG  156 (156)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            98876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.8e-27  Score=209.75  Aligned_cols=181  Identities=20%  Similarity=0.143  Sum_probs=114.0

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |.++.||+ +|+++|.+|.+|+||||+|+..|+.+++++|++++.+. ...+ ..+.+|||.|+..|+.++++.|++++.
T Consensus        54 ~~v~~Ll~-~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~-~~~~~~L~~a~~~~~~~~~~~l~~~~~  130 (291)
T d1s70b_          54 EEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPD-NEGWIPLHAAASCGYLDIAEYLISQGA  130 (291)
T ss_dssp             HHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccc-ccccccccccccccccchhhcccccCc
Confidence            56777775 77889999999999999999999999999999988876 6666 688999999999999999999998876


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCch-----------------------hhhhhccCCCCCCcHHHHHHhc
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL-----------------------ARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-----------------------~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                      .. ...|.+|.+++++|+..++.+.++.++.....                       ........+.+|.||||+|+..
T Consensus       131 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         131 HV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            65 44455555555555444444444444321000                       0011223344455555555555


Q ss_pred             CChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCC
Q 045346          139 RPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRG  190 (352)
Q Consensus       139 ~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~  190 (352)
                      |+.+.++.| .+.|++++.+|.+|+||||+|+..++.   +++++|.+.|++
T Consensus       210 ~~~~~~~~L-l~~g~din~~~~~g~TpL~~A~~~g~~---~iv~lLl~~Gad  257 (291)
T d1s70b_         210 GYTEVLKLL-IQARYDVNIKDYDGWTPLHAAAHWGKE---EACRILVENLCD  257 (291)
T ss_dssp             TCHHHHHHH-HTTTCCTTCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCC
T ss_pred             CChhhhccc-ccceecccccccCCCCHHHHHHHcCCH---HHHHHHHHCCCC
Confidence            555555322 235555555555555555555555433   455555554433

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.8e-27  Score=188.94  Aligned_cols=150  Identities=20%  Similarity=0.141  Sum_probs=136.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcC
Q 045346           23 WTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSF  102 (352)
Q Consensus        23 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (352)
                      .||||.|++.|+.++++.|+++|++. + .| ..|.||||+|+..++.++++.++...... ...+..+.+++|.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~-~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cc-cCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            49999999999999999999999876 4 57 79999999999999999999999988877 667888899999999999


Q ss_pred             CHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHH
Q 045346          103 RVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQK  182 (352)
Q Consensus       103 ~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~  182 (352)
                      +.+.++.+.+    .+.+.+.+|.+|+||||+|+..|+.+++ ++|.+.|++++.+|++|+||+|+|+.+++.   ++++
T Consensus        79 ~~~~~~~l~~----~~~~~~~~~~~g~T~L~~A~~~g~~~iv-~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~---eiv~  150 (153)
T d1awcb_          79 HANIVEVLLK----HGADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNE---DLAE  150 (153)
T ss_dssp             CHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHH
T ss_pred             cceeeecccc----cCCccccccccCchHHHhhhhcchhhee-eeccccccCCcccCCCCCCHHHHHHHcCCH---HHHH
Confidence            9999999998    6788999999999999999999999998 466679999999999999999999999877   6666


Q ss_pred             HH
Q 045346          183 LS  184 (352)
Q Consensus       183 ~l  184 (352)
                      +|
T Consensus       151 lL  152 (153)
T d1awcb_         151 IL  152 (153)
T ss_dssp             HH
T ss_pred             hC
Confidence            65

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=5.3e-27  Score=206.07  Aligned_cols=168  Identities=19%  Similarity=0.176  Sum_probs=144.4

Q ss_pred             hccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCC---c---
Q 045346           10 EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPD---C---   83 (352)
Q Consensus        10 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---~---   83 (352)
                      .+|+++|.+|.+|+||||+|++.|+.+++++|+++|+++ +.++ .+|.||||+|+..++.++++.+......   +   
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~-~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HcCCCccccCCCCCeeecccccccccccccccccccccc-cccc-ccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            478999999999999999999999999999999999998 8888 8999999999999999888887653110   0   


Q ss_pred             ----------------------------------------cccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhcc
Q 045346           84 ----------------------------------------YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE  123 (352)
Q Consensus        84 ----------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  123 (352)
                                                              ....+..|+||||+++..++.+.++.++..   .+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~---~~~~~~~  216 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDK  216 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTC
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccc---ccccccc
Confidence                                                    022456789999999999999999876653   4567889


Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHH
Q 045346          124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       124 ~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (352)
                      +|..|+||||+|++.|+.++++ +|.+.|+|++.+|++|+||||+|+..++.   +++++|.+
T Consensus       217 ~d~~g~tpL~~A~~~g~~~iv~-~Ll~~gadin~~d~~G~T~L~~A~~~~~~---~iv~lL~~  275 (277)
T d2fo1e1         217 QDEDGKTPIMLAAQEGRIEVVM-YLIQQGASVEAVDATDHTARQLAQANNHH---NIVDIFDR  275 (277)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHH-HHHHTTCCSSCCCSSSCCHHHHHHHTTCH---HHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHH-HHHHCcCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHH
Confidence            9999999999999999999995 55568999999999999999999999776   77777754

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=186.73  Aligned_cols=152  Identities=16%  Similarity=0.155  Sum_probs=135.7

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      .+||.||..|+.++++.|++++....+.+| ..|+||||+|+ .|+.+++++|++++.++ +..+.+|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d-~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccC-CCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            469999999999999999986443348888 89999999986 48899999999999998 7888999999999999999


Q ss_pred             HHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHH
Q 045346          104 VEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL  183 (352)
Q Consensus       104 ~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (352)
                      .++++.+++    .+.++|.+|.+|+||||+|++.|+.++++ +|. .|++++.+|.+|+||+|+|+..++.   +++++
T Consensus        81 ~~~~~~~l~----~~~~~n~~~~~~~t~L~~A~~~~~~~i~~-~L~-~~~~~~~~d~~G~TpL~~A~~~g~~---~iv~~  151 (156)
T d1bd8a_          81 LDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGHTAVVS-FLA-AESDLHRRDARGLTPLELALQRGAQ---DLVDI  151 (156)
T ss_dssp             HHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTCHHHHH-HHH-TTSCTTCCCTTSCCHHHHHHHSCCH---HHHHH
T ss_pred             ccccccccc----cccccccccCCCCeeeccccccccccccc-ccc-ccccccccCCCCCCHHHHHHHcCCH---HHHHH
Confidence            999999999    67889999999999999999999999885 555 6899999999999999999999776   88888


Q ss_pred             HHHc
Q 045346          184 SKDF  187 (352)
Q Consensus       184 l~~~  187 (352)
                      |+++
T Consensus       152 Ll~h  155 (156)
T d1bd8a_         152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.1e-27  Score=209.70  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=119.7

Q ss_pred             ccccccc-CCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcH---HHHHHHHhhCCCccccc
Q 045346           12 KKMIKET-DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHA---RTVETILSLSPDCYELV   87 (352)
Q Consensus        12 ~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~   87 (352)
                      +.++|.. |++|+||||+||+.|+.+++++|+++|+++ +.+| ..|+||||.|+..++.   +.++.+++...+....+
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d-~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCC-cccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            4466755 999999999999999999999999999998 8889 8999999999987752   22233333322333678


Q ss_pred             cCCCCchhHHHHhcCC----HHHHH--------HHHhcCch---------------------------------hhhhhc
Q 045346           88 DNKGWNFLHYAMVSFR----VEQLT--------NLLENNPL---------------------------------ARSLIN  122 (352)
Q Consensus        88 d~~g~t~Lh~A~~~~~----~~~v~--------~Ll~~~~~---------------------------------~~~~~n  122 (352)
                      |..|+||||.++..+.    ....+        .+.+....                                 .+..+|
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence            9999999999886443    22322        22221100                                 122379


Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHh
Q 045346          123 EGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus       123 ~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      .+|.+|+||||+|++.|+.++++ +|.+.|+|++.+|++|+||+|+|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~-~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVD-ALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHH-HHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999995 555689999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=197.42  Aligned_cols=188  Identities=19%  Similarity=0.175  Sum_probs=138.8

Q ss_pred             HHHHHHHHhccccccccC-CCCChHHHHHHHcCCHHHHHHHhhcCCCcc-------------------------------
Q 045346            2 AALRKLVEEKKKMIKETD-QYGWTPIHYAAYYGNYGMVNLLLEIDQSAS-------------------------------   49 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-------------------------------   49 (352)
                      |+++.|++ +|.++|.++ ..|+||||+|+..|+.+++++|++.+....                               
T Consensus        19 e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (285)
T d1wdya_          19 DLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD   97 (285)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhccc
Confidence            56777775 788898765 479999999999999999999998655430                               


Q ss_pred             -ccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcc---------ccccCCCCchhHHHHhcCCHHHHHHHHhcCc----
Q 045346           50 -NIANKDRKMTALHLAAGRGHARTVETILSLSPDCY---------ELVDNKGWNFLHYAMVSFRVEQLTNLLENNP----  115 (352)
Q Consensus        50 -~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~----  115 (352)
                       ...+ ..|.+++++|+..|+...++.++....+..         ...+..|.||||+|+++|+.+++++|++...    
T Consensus        98 ~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~  176 (285)
T d1wdya_          98 VNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  176 (285)
T ss_dssp             TTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT
T ss_pred             ccccc-cCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence             1111 344555556556666555555555433321         1234556666666666666666666654210    


Q ss_pred             ------------------------------hhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcch
Q 045346          116 ------------------------------LARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSV  165 (352)
Q Consensus       116 ------------------------------~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tp  165 (352)
                                                    ..|+++|.+|.+|+||||.|++.|+.+.++.+|...|++++.+|.+|+||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~Tp  256 (285)
T d1wdya_         177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  256 (285)
T ss_dssp             CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH
T ss_pred             cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence                                          03567788999999999999999999999877777899999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          166 RHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       166 l~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                      ||+|++.++.   +++++|.+.|+++...
T Consensus       257 L~~A~~~~~~---eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         257 LLLAVELKLK---KIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHTTCH---HHHHHHHHHSSCSCCS
T ss_pred             HHHHHHcCCH---HHHHHHHHCCCCCCcc
Confidence            9999999765   9999999999998653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9e-26  Score=181.73  Aligned_cols=138  Identities=19%  Similarity=0.268  Sum_probs=127.4

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |++++||.+++.+++.+|..|+||||+|+. |+.+++++|++++.++ +..+ ..|.+|++.++..++.++++.+++.++
T Consensus        16 ~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~   92 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQD-TSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-cccc-ccccccccccccccccccccccccccc
Confidence            688999998899999999999999999875 8899999999999988 7778 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      ++ +.+|.+|+||||+|++.|+.+++++|++     +.+++.+|.+|+||||+|++.|+.++++.|+
T Consensus        93 ~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~-----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          93 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-----ESDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-----TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cc-ccccCCCCeeeccccccccccccccccc-----cccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            98 7889999999999999999999998875     5789999999999999999999999995444

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3e-25  Score=189.59  Aligned_cols=168  Identities=16%  Similarity=0.133  Sum_probs=135.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcc--ccccCCCCchhHHHHh
Q 045346           23 WTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCY--ELVDNKGWNFLHYAMV  100 (352)
Q Consensus        23 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~  100 (352)
                      +||||+|++.|+.++++.|++..+...+.+| .+|+||||+|+..|+.+++++|+++++++.  ...+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            4899999999999999999997666668888 899999999999999999999999988762  3345667777777766


Q ss_pred             cCCHHHHHHHHhcCc-------------------------------hhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHh
Q 045346          101 SFRVEQLTNLLENNP-------------------------------LARSLINEGDAMENTPLHVLAAVRPKEFHAVMIK  149 (352)
Q Consensus       101 ~~~~~~v~~Ll~~~~-------------------------------~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~  149 (352)
                      .+..++++.++....                               ..+...+.+|.+|+||||+|+..|+.++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            666555554432211                               0345567789999999999999999999977776


Q ss_pred             hcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHH-cCCCCCCc
Q 045346          150 KTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD-FGRGQYSN  194 (352)
Q Consensus       150 ~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~-~g~~~~~~  194 (352)
                      ..+.+++.+|.+|+||||+|+..++.   +++++|.+ .|+++...
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~---~~v~~Ll~~~gad~~~~  202 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHG---DAAVLLVEKYGAEYDLV  202 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHCCCSCCC
T ss_pred             cccccccccccccCCchhhhcccccH---HHHHHHHHhcCCCCCCc
Confidence            55688999999999999999999765   88888886 57766543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-25  Score=205.47  Aligned_cols=174  Identities=22%  Similarity=0.231  Sum_probs=146.2

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCC
Q 045346           11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNK   90 (352)
Q Consensus        11 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (352)
                      ........+..|.||||+|+..++.++++.+.+.+... +..+ ..|.||||.|+..++.+++++|+++++++ +..+..
T Consensus       220 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~  296 (408)
T d1n11a_         220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGN-KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM  296 (408)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS
T ss_pred             ccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-cccc-CCCCChhhhhhhcCcHHHHHHHHHCCCcc-cccccc
Confidence            34445556667777888888888888888888877666 6677 78999999999999999999999999988 778889


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHh
Q 045346           91 GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS  170 (352)
Q Consensus        91 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~  170 (352)
                      +.||||.++..++.+.++.+++    .|.++|.+|.+|+||||+|++.|+.++++ +|.++|++++.+|++|+||+|+|+
T Consensus       297 ~~t~L~~~~~~~~~~~~~~ll~----~g~~in~~d~~G~T~Lh~A~~~g~~~iv~-~Ll~~GAd~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         297 GYTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVT-LLLKNGASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH-HHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             ccccchhhcccCcceeeeeecc----ccccccccCCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999998    78899999999999999999999999995 555699999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHcCCCCC
Q 045346          171 YGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       171 ~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      ..++.+..++++.+.+.+....
T Consensus       372 ~~~~~~iv~~L~~~~~~~~~~~  393 (408)
T d1n11a_         372 RLGYISVTDVLKVVTDETSFVL  393 (408)
T ss_dssp             HTTCHHHHHHHHHHCCCCSSCC
T ss_pred             HcCCHHHHHHHHHHHhcccccc
Confidence            9988755555555555554443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1e-25  Score=197.72  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=147.0

Q ss_pred             ccccC-CCCChHHHHHHHcCCHHHHHHHh--------hcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccc
Q 045346           15 IKETD-QYGWTPIHYAAYYGNYGMVNLLL--------EIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYE   85 (352)
Q Consensus        15 ~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~   85 (352)
                      +|..| .+|+||||+|+..|+.++++.|+        +.|+++ +.+| .+|.||||+|+.+|+.+++++|+++|+++ +
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD-CDENTPLMLAVLARRRRLVAYLMKAGADP-T  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccC-CCCCeeecccccccccccccccccccccc-c
Confidence            45555 46999999999999999887774        457777 8889 89999999999999999999999999998 8


Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHhcCch-------------------------------------------hhhhhc
Q 045346           86 LVDNKGWNFLHYAMVSFRVEQLTNLLENNPL-------------------------------------------ARSLIN  122 (352)
Q Consensus        86 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-------------------------------------------~~~~~n  122 (352)
                      .+|.+|+||||+|+..++.++++.+......                                           .....+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            8899999999999999998888777532110                                           012345


Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          123 EGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       123 ~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      ..+..|.||||+++..++.+....++...+.+.+.+|..|+||||+|+..++.   +++++|.+.|+++..
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~---~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI---EVVMYLIQQGASVEA  249 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH---HHHHHHHHTTCCSSC
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH---HHHHHHHHCcCCCCC
Confidence            56778999999999999999988888889999999999999999999999765   899999999987654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=183.34  Aligned_cols=80  Identities=14%  Similarity=0.039  Sum_probs=58.1

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHH
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI  168 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~  168 (352)
                      ..|.++||.|+..+..++++.+++    .+...+.+|.+|+||||+|+..|+.++++ +|.++|+|++.+|.+|+||||+
T Consensus       142 ~~~~~~l~~a~~~~~~~~~~~~~~----~~~~~~~~d~~g~t~L~~A~~~g~~~~v~-~Ll~~Gad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         142 KSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPLVR-TLVRSGADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCTTTT
T ss_pred             cchhhHHHHHHHhhhhhhhhhhhh----hccccccccccCcchHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCCHHHH
Confidence            456667777777777777777766    55667777778888888888888777774 4446788888888888888888


Q ss_pred             HhhcC
Q 045346          169 FSYGY  173 (352)
Q Consensus       169 a~~~~  173 (352)
                      |+.++
T Consensus       217 A~~~~  221 (228)
T d1k1aa_         217 ARSRR  221 (228)
T ss_dssp             CSSHH
T ss_pred             HHhCC
Confidence            77653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.1e-24  Score=190.98  Aligned_cols=162  Identities=20%  Similarity=0.138  Sum_probs=140.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHh
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMV  100 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (352)
                      +|.||||.||+.|+.++|++|+++|+++ +.+| .+|.||||+|+.+|+.+++++|++++++. ...+..+.+|||.++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d-~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYAN-VDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccC-CCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            3569999999999999999999999998 8889 89999999999999999999999999987 7778899999999999


Q ss_pred             cCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC--------------------------cc
Q 045346          101 SFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ--------------------------AN  154 (352)
Q Consensus       101 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g--------------------------~~  154 (352)
                      .++.+.++.|++    .+...+.+|.+|.+|+++|+..++.+.+..++...+                          .+
T Consensus       116 ~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         116 CGYLDIAEYLIS----QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccchhhcccc----cCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence            999999999999    667788899999999999998887776665554333                          23


Q ss_pred             ccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCC
Q 045346          155 YDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQY  192 (352)
Q Consensus       155 ~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~  192 (352)
                      ....+..|.||+|.|+..++.   ++++.|.+.|.++.
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~---~~~~~Ll~~g~din  226 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYT---EVLKLLIQARYDVN  226 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCH---HHHHHHHTTTCCTT
T ss_pred             cccccCCCCChhhHHHHcCCh---hhhcccccceeccc
Confidence            455678899999999999765   88899988776543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.5e-25  Score=187.33  Aligned_cols=166  Identities=18%  Similarity=0.098  Sum_probs=138.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHH----hhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           21 YGWTPIHYAAYYGNYGMVNLL----LEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~L----l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      +|+||||+|+..|+.++++.|    ...+.++ +.+| .+|+||||+|+..|+.+++++|++.|+++ +..|.+|+||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d-~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQN-NLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCC-TTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCC-CCCCccccccccccccccccccccccccc-cccccccccccc
Confidence            599999999999997655544    4456666 8889 79999999999999999999999999998 889999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCch--hhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccc-cCCcchHHHHhhcC
Q 045346           97 YAMVSFRVEQLTNLLENNPL--ARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVN-KRNVSVRHIFSYGY  173 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~--~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n-~~g~Tpl~~a~~~~  173 (352)
                      .++.+++.++++.+++....  .....+....+|+||||.|+..++.+.+. ++...|.+.+..+ .+|.||+|+|+..+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~-~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE-LLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHH-HHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhhee-eecccCcccccccccCCCCccccccccc
Confidence            99999999999999885432  23445566778999999999999988885 5556788887765 57999999999997


Q ss_pred             CCcHHHHHHHHHHcCCCCCC
Q 045346          174 PKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       174 ~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +.   +++++|.+.|+++..
T Consensus       157 ~~---~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         157 NP---DLVSLLLKCGADVNR  173 (221)
T ss_dssp             CH---HHHHHHHTTTCCSCC
T ss_pred             cH---HHHHHHHhcCCcccc
Confidence            66   899999987766543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.8e-25  Score=171.22  Aligned_cols=120  Identities=19%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCC-chhHHHH
Q 045346           21 YGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGW-NFLHYAM   99 (352)
Q Consensus        21 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~   99 (352)
                      .+.++||+|++.|+.+++++|+++|.++ +.++ ..|.||||+|+ .|+.+++++|+++|+++ +.+|..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~-~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-cccc-ccccccccccc-ccccccccccccccccc-cccccccccccccccc
Confidence            3568999999999999999999999888 8888 79999999764 78999999999999998 66777665 6999999


Q ss_pred             hcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346          100 VSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus       100 ~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      ++|+.+++++|++    .|.+++.+|.+|+||||+|++.|+.++++.|+
T Consensus        78 ~~g~~~~v~~Ll~----~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          78 REGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccc----cccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999    78889999999999999999999999885443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-24  Score=172.56  Aligned_cols=142  Identities=18%  Similarity=0.265  Sum_probs=127.9

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.|++ +|.+++.+|.+|+||||+|+ .|+.+++++|+++++++ +.++ ..|.+|++.++..++.+.++.|++.+.
T Consensus        15 ~~v~~Ll~-~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~   90 (156)
T d1ihba_          15 EQLTSLLQ-NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKD-RTGFAVIHDAARAGFLDTLQTLLEFQA   90 (156)
T ss_dssp             HHHHHHTT-SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCcCccCCcccccccccc-ccccccccccccccccc-cccc-ccCcccccccccccccccccccccccc
Confidence            56777776 78999999999999999886 78999999999999998 8888 799999999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcC
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQ  152 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (352)
                      +. +..|..|.+|+|+|+..++.++++.|++..   +.+.+.+|.+|+||||+|++.++.+++ ++|.++|
T Consensus        91 ~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~d~~g~TpL~~A~~~~~~~iv-~~Ll~~G  156 (156)
T d1ihba_          91 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT---ASNVGHRNHKGDTACDLARLYGRNEVV-SLMQANG  156 (156)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---CCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHTC
T ss_pred             cc-cccccccccccccccccccccccccccccc---cccccccCCCCCCHHHHHHHcCCHHHH-HHHHhcC
Confidence            88 888999999999999999999999999942   247899999999999999999999998 4555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.5e-25  Score=168.12  Aligned_cols=105  Identities=19%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             cHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc
Q 045346           59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        59 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                      |||++|+++|+.++++.|+++|+++ +.+|.+|+||||+|+.+|+.++++++++    .|.++|.+|.+|+||||+|+..
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~----~g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHH----SSCTTTCCSSSCSCHHHHHHTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccc----ccceeeecccccccchhhhhhc
Confidence            6777777777777777777777776 6667777777777777777777777776    5666777777777777777777


Q ss_pred             CChHHHHHHHhhcCccccccccCCcchHHHH
Q 045346          139 RPKEFHAVMIKKTQANYDAVNKRNVSVRHIF  169 (352)
Q Consensus       139 ~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a  169 (352)
                      |+.++++ +|.++|+|++.+|++|+||+|+|
T Consensus        79 ~~~~~v~-~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          79 GHVSCVK-LLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TCCHHHH-HHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             Cchhhhh-hhhcccccceeeCCCCCCHHHHH
Confidence            7777763 44456777777777777777766

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3e-25  Score=170.04  Aligned_cols=107  Identities=19%  Similarity=0.088  Sum_probs=102.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcC
Q 045346           23 WTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSF  102 (352)
Q Consensus        23 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (352)
                      .|||++|++.|+.++++.|+++|.++ +.++ ..|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~-~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTL-EGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCS-SSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccc-cccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            48999999999999999999999988 8888 89999999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHH
Q 045346          103 RVEQLTNLLENNPLARSLINEGDAMENTPLHVLA  136 (352)
Q Consensus       103 ~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~  136 (352)
                      +.+++++|++    .|+++|.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll~----~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLS----KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHT----TCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhc----ccccceeeCCCCCCHHHHHh
Confidence            9999999999    78899999999999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-23  Score=190.89  Aligned_cols=177  Identities=21%  Similarity=0.218  Sum_probs=146.7

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+|+.|++ +|+++|.+|..|+||||+|+..|+.+++++|+++|+++ +.++ .+|.||||+|+..|+.++++.|+..++
T Consensus        14 ~~v~~Ll~-~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~   90 (408)
T d1n11a_          14 PIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKA-KDDQTPLHCAARIGHTNMVKLLLENNA   90 (408)
T ss_dssp             HHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhh
Confidence            56777776 68889999999999999999999999999999999887 8888 789999999999999999999987665


Q ss_pred             Ccc--------------------------------ccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCC
Q 045346           82 DCY--------------------------------ELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN  129 (352)
Q Consensus        82 ~~~--------------------------------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~  129 (352)
                      +..                                ...+.++.++++.|+..++.++++.|++    .+.+++..+.+|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~----~~~~~~~~~~~~~  166 (408)
T d1n11a_          91 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE----RDAHPNAAGKNGL  166 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCSSCC
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCcCc
Confidence            431                                2346678889999999999999999998    6778889999999


Q ss_pred             cHHHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCC
Q 045346          130 TPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGR  189 (352)
Q Consensus       130 T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~  189 (352)
                      +|||+|+..++.+.+ ++|.++|++++..+..|.||+|.+......   ++...+...+.
T Consensus       167 ~~L~~A~~~~~~~~~-~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~---~~~~~l~~~~~  222 (408)
T d1n11a_         167 TPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQV---EVARSLLQYGG  222 (408)
T ss_dssp             CHHHHHHHTTCHHHH-HHHGGGTCCSCCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTC
T ss_pred             hHHHHHHHcCCHHHH-HHHHhcCCcccccCCCCCCcchhhhccchh---hhhhhhhhccc
Confidence            999999999998887 455568999999999999999999887544   55555555443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.6e-24  Score=164.16  Aligned_cols=121  Identities=15%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCC-cHHHH
Q 045346           56 RKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN-TPLHV  134 (352)
Q Consensus        56 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~  134 (352)
                      .+.++||+|+..|+.+++++|+++|+++ +.+|.+|+||+|+|+ .|+.+++++|++    .|.++|.+|..|. ||||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccc----ccccccccccccccccccc
Confidence            4679999999999999999999999998 889999999999775 799999999999    7889999998876 69999


Q ss_pred             HHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHH
Q 045346          135 LAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       135 A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (352)
                      |++.|+.++++ +|.+.|++++.+|.+|+||+|+|+..++.   +++++|++
T Consensus        76 A~~~g~~~~v~-~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~---~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLV-VLHRAGARLDVRDAWGRLPVDLAEELGHR---DVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHH-HHHHHTCCSSCCCTTCCCHHHHHHHHTCH---HHHHHHSS
T ss_pred             ccccccccccc-cccccccccccccCCCCCHHHHHHHcCCH---HHHHHHHh
Confidence            99999999995 55568999999999999999999999766   78887764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.8e-23  Score=164.16  Aligned_cols=137  Identities=24%  Similarity=0.338  Sum_probs=123.7

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP   81 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~   81 (352)
                      |+++.||+ +|++++ .|..|+||||+|+..++.++++.+++..... ...+ ..+.++++.++...+.++++.+...+.
T Consensus        16 ~~v~~LL~-~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (153)
T d1awcb_          16 DEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DART-KVDRTPLHMAASEGHANIVEVLLKHGA   91 (153)
T ss_dssp             HHHHHHHH-HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHH-cCCCcc-cccCCCccccccccccccccccccccccccc-cccc-cccccccccccccccceeeecccccCC
Confidence            67888887 566666 6999999999999999999999999887766 4555 678899999999999999999999999


Q ss_pred             CccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHH
Q 045346           82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      +. ..+|.+|+||||+|+..|+.+++++|++    .|+++|.+|.+|+||||+|+..|+.+++ ++|
T Consensus        92 ~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~----~gad~~~~d~~g~Tpl~~A~~~g~~eiv-~lL  152 (153)
T d1awcb_          92 DV-NAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGNEDLA-EIL  152 (153)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHH
T ss_pred             cc-ccccccCchHHHhhhhcchhheeeeccc----cccCCcccCCCCCCHHHHHHHcCCHHHH-HhC
Confidence            88 7889999999999999999999999999    7889999999999999999999999988 455

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=161.56  Aligned_cols=117  Identities=19%  Similarity=0.248  Sum_probs=93.2

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCC
Q 045346           24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR  103 (352)
Q Consensus        24 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (352)
                      ++||.|+..|+.++++.|+++|.++ +.+| .+|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d-~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccc-ccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            5788888888888888888888887 7788 78888888888888888888888888887 7788888888888888888


Q ss_pred             HHHHHHHHhcCchhhhhhccCCC-CCCcHHHHH--HhcCChHHHHHH
Q 045346          104 VEQLTNLLENNPLARSLINEGDA-MENTPLHVL--AAVRPKEFHAVM  147 (352)
Q Consensus       104 ~~~v~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A--~~~~~~~~~~~l  147 (352)
                      .+++++|++    .|++++.++. +|+||++++  ++.|+.++++.|
T Consensus        80 ~~~v~~Ll~----~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          80 VQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             HHHHHHHHH----cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            888888888    6777777664 477877665  455667777443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-22  Score=168.67  Aligned_cols=167  Identities=20%  Similarity=0.128  Sum_probs=136.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhh----cCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchh
Q 045346           20 QYGWTPIHYAAYYGNYGMVNLLLE----IDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFL   95 (352)
Q Consensus        20 ~~g~tpLh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L   95 (352)
                      ++|+||||+|++.|+.++++.|++    .+.++ +.+| ..|+||||+|+..|+.++++.|++++++. +..+.+|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccC-CCCCccceehhcccccccccccccccccc-ccccccccccc
Confidence            469999999999999999998875    56666 8888 89999999999999999999999999888 77888899999


Q ss_pred             HHHHhcCCHHHHHHHHhcCchh----------------------------------hhhhccCCCCCCcHHHHHHhcCCh
Q 045346           96 HYAMVSFRVEQLTNLLENNPLA----------------------------------RSLINEGDAMENTPLHVLAAVRPK  141 (352)
Q Consensus        96 h~A~~~~~~~~v~~Ll~~~~~~----------------------------------~~~~n~~d~~G~T~Lh~A~~~~~~  141 (352)
                      +.|...++.++++.........                                  .......+..|++|||.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            9999988888777664321100                                  011234456799999999999988


Q ss_pred             HHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          142 EFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       142 ~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      +.... +.+.|.+.+.+|..|.||+|+|+..++.   +++++|.+.|+++..
T Consensus       158 ~~~~~-~~~~~~~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         158 SMVQL-LLQHGANVNAQMYSGSSALHSASGRGLL---PLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHHH-HHHTTCCTTCBCTTSCBHHHHHHHHTCH---HHHHHHHHTTCCTTC
T ss_pred             hhhhh-hhhhccccccccccCcchHHHHHHcCCH---HHHHHHHHCCCCCCC
Confidence            88754 4458999999999999999999999765   899999998876543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=1.2e-24  Score=197.90  Aligned_cols=170  Identities=13%  Similarity=0.077  Sum_probs=107.1

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHHhhcCCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHhhCCCcc--
Q 045346            8 VEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK-DRKMTALHLAAGRGHARTVETILSLSPDCY--   84 (352)
Q Consensus         8 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--   84 (352)
                      |...++++|.+|.+|+||||+||+.|+.++|++|+++|++. +..+. .+|.||||+|+.+||.++|++|++.+++..  
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~  190 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA  190 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc
Confidence            45577777888888888888888888888888888877766 44431 357788888888888888888887776541  


Q ss_pred             ccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhcc---------------------------------CCCC----
Q 045346           85 ELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE---------------------------------GDAM----  127 (352)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~---------------------------------~d~~----  127 (352)
                      +..+.+|.||+|.|+++|+.+++++|++..    ++++.                                 .+.+    
T Consensus       191 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  266 (346)
T d2ajaa1         191 MIQAENYYAFRWAAVGRGHHNVINFLLDCP----VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD  266 (346)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHTTSH----HHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCC
T ss_pred             ccccCCCcchhhHHhhcCHHHHHHHHHhCC----CCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHh
Confidence            223445667777777788888888877632    11110                                 0111    


Q ss_pred             ------------CCcHHHHHHhcCChHHHHHHHhhcCc-----cccccccCCcchHHHHhhcCCCcHHHHHHHHHH
Q 045346          128 ------------ENTPLHVLAAVRPKEFHAVMIKKTQA-----NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKD  186 (352)
Q Consensus       128 ------------G~T~Lh~A~~~~~~~~~~~lL~~~g~-----~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (352)
                                  +.+++|.|+..++.+.++.|+. .+.     +.+..+.+|+||||+|++.|+.   +++++|.+
T Consensus       267 ~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~---e~v~lLL~  338 (346)
T d2ajaa1         267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQ---GACALLLS  338 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCT---THHHHHTT
T ss_pred             HHhcccccccchhhhHHHHHhcCChHHHHHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcH---HHHHHHhC
Confidence                        1245666666666666644443 332     2334445778888888888777   66666654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=157.67  Aligned_cols=119  Identities=18%  Similarity=0.111  Sum_probs=104.9

Q ss_pred             cHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhc
Q 045346           59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAV  138 (352)
Q Consensus        59 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (352)
                      ++||.|+..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++    .+.++|.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~----~g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccc----cccccccccccCcccccccchh
Confidence            6899999999999999999999998 8899999999999999999999999999    7889999999999999999999


Q ss_pred             CChHHHHHHHhhcCcccccccc-CCcchHHHHh--hcCCCcHHHHHHHHHH
Q 045346          139 RPKEFHAVMIKKTQANYDAVNK-RNVSVRHIFS--YGYPKLKEEIQKLSKD  186 (352)
Q Consensus       139 ~~~~~~~~lL~~~g~~~~~~n~-~g~Tpl~~a~--~~~~~~~~~i~~~l~~  186 (352)
                      |+.+++ ++|.++|++++.++. +|+||++++.  ..++.   +++++|.+
T Consensus        78 g~~~~v-~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~---eiv~~L~~  124 (130)
T d1ycsb1          78 NNVQVC-KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT---QCSQFLYG  124 (130)
T ss_dssp             TCHHHH-HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC---CHHHHHHH
T ss_pred             hHHHHH-HHHHHcCCCcccccCCCCCCHHHHHHHHHcChH---HHHHHHHh
Confidence            999998 455568999998774 5899988774  34444   56676655

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.5e-21  Score=154.67  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=101.1

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccc-----cccCCCCCcHHHHHHhc---CcHHHHHHHHhhCCCccccccCCCCchhH
Q 045346           25 PIHYAAYYGNYGMVNLLLEIDQSASN-----IANKDRKMTALHLAAGR---GHARTVETILSLSPDCYELVDNKGWNFLH   96 (352)
Q Consensus        25 pLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (352)
                      .|+.|++.++...+..++..+.+...     ..+ ..|+||||+|++.   |+.+++++|+++|+++ +.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCC-CCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            35577889999999998887765421     124 6789999999974   6789999999999998 889999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHh
Q 045346           97 YAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIK  149 (352)
Q Consensus        97 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~  149 (352)
                      +|++.|+.+++++|++    .|++++.+|.+|+||||+|++.|+.++++.|+.
T Consensus        87 ~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccc----cCccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999998    788999999999999999999999888854443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=7.3e-24  Score=192.65  Aligned_cols=145  Identities=13%  Similarity=0.079  Sum_probs=115.4

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHH---HhhcCCCccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCcccccc--
Q 045346           14 MIKETDQYGWTPIHYAAYYGNYGMVNL---LLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD--   88 (352)
Q Consensus        14 ~~~~~d~~g~tpLh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--   88 (352)
                      .++.+|..|.||||+||+.|+.+++++   |++.++++ +.++ .+|+||||+||++||.++|++|++.|+++ +..+  
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~-~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~  158 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQ  158 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHS
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccc
Confidence            345677899999999999999877765   67888887 8888 79999999999999999999999999988 5544  


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCccccccccCCc
Q 045346           89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNV  163 (352)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~  163 (352)
                      .+|+||||+|+++|+.+++++|++.... ....+.++.+|.||+|.|++.|+.+++ ++|.+.|++++..+..+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~iv-~~Ll~~ga~~~~~~~~~~  231 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVI-NFLLDCPVMLAYAEIHEF  231 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHH-HHHTTSHHHHHHHHHCTT
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCHHHHH-HHHHhCCCCcchHHHHHH
Confidence            5699999999999999999999995432 223455566788899999999999998 556668888775544433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.3e-21  Score=169.26  Aligned_cols=138  Identities=20%  Similarity=0.193  Sum_probs=120.4

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcHHHHHHhc----CcHHHHHHHHhhCCCccccccCC
Q 045346           16 KETDQYGWTPIHYAAYYGNYGMVNLLLEI-DQSASNIANKDRKMTALHLAAGR----GHARTVETILSLSPDCYELVDNK   90 (352)
Q Consensus        16 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~   90 (352)
                      +..+..|.||||+|++.|+.+++++|+++ +.++ +..+ ..|.++++.+...    +..++++.|+++|+++ +.+|.+
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~  218 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER  218 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCC-TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-cccc-CCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCC
Confidence            44566799999999999999999999986 5555 7888 7899988876553    3567999999999998 888999


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCCCCcHHHHHHhcCChHHHHHHHhhcCcccccccc
Q 045346           91 GWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNK  160 (352)
Q Consensus        91 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~  160 (352)
                      |.||||+|++.|+.+++++|++.   .+.++|.+|.+|+||||+|++.|+.+++ ++|.++|+|+|.+|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~~~eiv-~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIA-ELLCKRGASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHHSSCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCCHHHH-HHHHHCCCCCCcccC
Confidence            99999999999999999999984   4678999999999999999999999999 566679999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.3e-20  Score=150.48  Aligned_cols=126  Identities=14%  Similarity=0.082  Sum_probs=107.3

Q ss_pred             HHHHHHhcCcHHHHHHHHhhCCCccc-----cccCCCCchhHHHHhc---CCHHHHHHHHhcCchhhhhhccCCCCCCcH
Q 045346           60 ALHLAAGRGHARTVETILSLSPDCYE-----LVDNKGWNFLHYAMVS---FRVEQLTNLLENNPLARSLINEGDAMENTP  131 (352)
Q Consensus        60 pLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T~  131 (352)
                      .|+.|++.++...+..++..+.+...     ..+..|+||||+|++.   ++.+++++|++    .|.++|.+|.+|+||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~Tp   84 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH----cCCChhhhhhhhccc
Confidence            45567889999999999988877522     2367899999999974   67899999999    788999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhhcCccccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCC
Q 045346          132 LHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYS  193 (352)
Q Consensus       132 Lh~A~~~~~~~~~~~lL~~~g~~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~  193 (352)
                      ||+|++.|+.++++ +|.++|++++.+|++|+||+|+|+..++.   +++++|.+.+.++..
T Consensus        85 Lh~A~~~~~~~~v~-~Ll~~gad~~~~d~~g~tpL~~A~~~~~~---~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          85 LHYCCLTDNAECLK-LLLRGKASIEIANESGETPLDIAKRLKHE---HCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHTTCCC
T ss_pred             cccccccccccccc-cccccCccccccCCCCCCHHHHHHHcCCH---HHHHHHHHhCCCCCC
Confidence            99999999999995 55568999999999999999999999766   888888887766544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=1.5e-19  Score=151.33  Aligned_cols=138  Identities=23%  Similarity=0.253  Sum_probs=118.6

Q ss_pred             HHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHH----------------------------------HHHhhcCCC
Q 045346            2 AALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMV----------------------------------NLLLEIDQS   47 (352)
Q Consensus         2 e~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v----------------------------------~~Ll~~~~~   47 (352)
                      |+++.|+. .+..++.+|..+.++++.++..++....                                  +.|.+.+.+
T Consensus        37 e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  115 (209)
T d1ot8a_          37 DAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD  115 (209)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC
T ss_pred             HHHHHHHh-hccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence            56666655 7888999999999999998877664433                                  445555555


Q ss_pred             ccccccCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCHHHHHHHHhcCchhhhhhccCCCC
Q 045346           48 ASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM  127 (352)
Q Consensus        48 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~  127 (352)
                      . +.++ ..|.||||+++..|..++++.+++.+.++ +..|.+|.||||+|+.+|+.++++.|++    .|+++|.+|.+
T Consensus       116 ~-~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gad~n~~d~~  188 (209)
T d1ot8a_         116 I-NAAD-NSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLD----NFANREITDHM  188 (209)
T ss_dssp             T-TCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTT
T ss_pred             c-cccC-CCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHH----CCCCCCCcCCC
Confidence            4 6677 78999999999999999999999999988 8889999999999999999999999999    78899999999


Q ss_pred             CCcHHHHHHhcCChHHHHHHH
Q 045346          128 ENTPLHVLAAVRPKEFHAVMI  148 (352)
Q Consensus       128 G~T~Lh~A~~~~~~~~~~~lL  148 (352)
                      |+||||+|++.|+.+++ ++|
T Consensus       189 g~Tpl~~A~~~~~~~iv-~lL  208 (209)
T d1ot8a_         189 DRLPRDVASERLHHDIV-RLL  208 (209)
T ss_dssp             SCCHHHHHHHTTCHHHH-HHH
T ss_pred             CCCHHHHHHHcCCHHHH-hhc
Confidence            99999999999999988 454

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.9e-20  Score=166.63  Aligned_cols=141  Identities=19%  Similarity=0.140  Sum_probs=105.9

Q ss_pred             CCCccccc-cCCCCCcHHHHHHhcCcHHHHHHHHhhCCCccccccCCCCchhHHHHhcCCH---HHHHHHHhcCchhhhh
Q 045346           45 DQSASNIA-NKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRV---EQLTNLLENNPLARSL  120 (352)
Q Consensus        45 ~~~~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~---~~v~~Ll~~~~~~~~~  120 (352)
                      +.++ +.. | .+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.||..++.   +.++.+++.   ....
T Consensus        96 ~~dv-n~~~D-~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~---l~~~  169 (301)
T d1sw6a_          96 QLNL-NIPVD-EHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDY---LYPC  169 (301)
T ss_dssp             CCCS-CSCCS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGG
T ss_pred             CCCc-CcCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHH---Hhhh
Confidence            3444 444 6 79999999999999999999999999998 88999999999999987652   222333332   2245


Q ss_pred             hccCCCCCCcHHHHHHhcCCh----HH-------HHHHHhhcCc------------------------------------
Q 045346          121 INEGDAMENTPLHVLAAVRPK----EF-------HAVMIKKTQA------------------------------------  153 (352)
Q Consensus       121 ~n~~d~~G~T~Lh~A~~~~~~----~~-------~~~lL~~~g~------------------------------------  153 (352)
                      ++.+|..|+||||+++..+..    ..       +..++.+.+.                                    
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            677899999999998875432    11       1112222221                                    


Q ss_pred             -cccccccCCcchHHHHhhcCCCcHHHHHHHHHHcCCCCCCc
Q 045346          154 -NYDAVNKRNVSVRHIFSYGYPKLKEEIQKLSKDFGRGQYSN  194 (352)
Q Consensus       154 -~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~g~~~~~~  194 (352)
                       .+|.+|.+|+||||+|+..++.   +++++|.+.|+++...
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~~---~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGNI---SIVDALLDYGADPFIA  288 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCH---HHHHHHHHTTCCTTCC
T ss_pred             cCccCCCCCCCCHHHHHHHcCCH---HHHHHHHHCCCCCCCC
Confidence             2688899999999999999776   9999999999887654