Citrus Sinensis ID: 045357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSSNNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNRRPKAPVVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCLPPTNH
Secondary Structure (PSIPRED)
ccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccEEEEcccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccEcccEcccccccccccHEEEEEEHccHHHHHHHHHHccHHccHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccccccccccEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mscngcrilrkgcgddciikpcldwikssdAQANATLFLAKFYGraglinlieagpqhlrpAIFKSLLYEACGrivdpisgsvgllwsgkWEQCQAAVDAVLkgktitqnpsssssssssnnnapaaapwtlnvqspplkiydirhvskdpsaancsdkTKARAKrswnrrpkapvvgresiqDQSSWLQSQVisrseddyESIFSVETVEgsldvnrnkqrwvqngngdvgleltlclpptnh
Flexible Loop (DISEMBL)
mscngcrilrkgcgddCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQnpsssssssssnnNAPAAAPWTLNVQSPPLKIYDIRHVskdpsaancsdktkarakrswnrrpkapvvgresiqdqsswLQSQVISRSEDDYESIFSVETvegsldvnrnkqrwvqngngdvgleltlclpptnh
Low Complexity Region (SEG)
MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQnpsssssssssnnnapaaapWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNRRPKAPVVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCLPPTNH
Disordered region (IsUnstruct)
***NGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGK*************************TLNV****LKIYDI**********************************************************SIFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCL*****
Disordered Region (DISOPRED)
MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGK******************************************************************************************************************************GLELTLCLPPT**
Disordered Region (DISEMBL)
MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKT********************AAPWTLNVQSPPLKIYDIRHVSKD**************************************************YESIFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCLPPTNH
Disordered Region (DISPRO)
*SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI****************************SPPLKIY****************************************************************V*TVEGSLD************NGDVGLELTLCLPPT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSSNNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNRRPKAPVVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCLPPTNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9CA30	233	LOB domain-containing pro	yes	no	0.901	0.944	0.497	6e-57
Q9M886	263	LOB domain-containing pro	no	no	0.901	0.836	0.486	1e-55
Q9ZW96	233	LOB domain-containing pro	no	no	0.540	0.566	0.613	1e-48
Q9FN11	250	LOB domain-containing pro	no	no	0.454	0.444	0.585	2e-39
Q9SN23	247	LOB domain-containing pro	no	no	0.454	0.449	0.594	2e-38
Q9SZE8	240	LOB domain-containing pro	no	no	0.438	0.445	0.588	5e-38
Q9LHS8	177	LOB domain-containing pro	no	no	0.487	0.672	0.266	9e-07
Q9SHE9	172	LOB domain-containing pro	no	no	0.331	0.470	0.290	2e-06
Q8LBW3	193	LOB domain-containing pro	no	no	0.315	0.398	0.317	3e-06
Q9SK08	232	LOB domain-containing pro	no	no	0.327	0.344	0.294	3e-06

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 150/247 (60%), Gaps = 27/247 (10%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           +SCNGCR+LRKGC  DC I+PCL WIKS+D+QANATLFLAKFYGRAGL+NLIE+GP HLR
Sbjct: 3   ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+P+ GSVGL+WSG W QCQAAVDAVL G  IT  P  S+S+S  
Sbjct: 63  PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQ 122

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDP-----SAANCSDKTKARAKRSWNRRPKAP 175
                           PP + YDIRHV+KDP     S+ N + +  A   ++   R K  
Sbjct: 123 --------------IIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRE 168

Query: 176 VVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWV-----QNGNGD 230
            V +        W   Q+ S S       F++E VE   +   N+         Q    +
Sbjct: 169 SVNQLGECSHDMW---QLPSSSATHGYGHFTLENVESRREAPFNQSSPNLGFDDQVDINE 225

Query: 231 VGLELTL 237
           VGLEL L
Sbjct: 226 VGLELRL 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 161/253 (63%), Gaps = 33/253 (13%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC +DC I+PCL WIKS +AQANAT+FLAKFYGRAGL+NLI AGP HLR
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           P IF+SLL+EACGRIV+PI GSVGLLWSG W+ CQ AV+AV+KG+ + +  + +++    
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG-- 120

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSD--------KTKARAKRSWNRRP 172
                         Q PPLKIYDIRH+SKD ++A  +         KT+ RAKR      
Sbjct: 121 --------------QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAI 165

Query: 173 KAPVVGR--ESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQNGNGD 230
           +A   G+  E+  D S   QS++++  E   ES  S   V   L  +    +    G+G+
Sbjct: 166 QAESEGKSDEASHDSSLSHQSEIVAAHEG--ESKESESNVSEVLAFSPPAVK----GSGE 219

Query: 231 VGLELTLCLPPTN 243
           + L+LTL L P +
Sbjct: 220 IKLDLTLRLEPVS 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 111/150 (74%), Gaps = 18/150 (12%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++C I+PCL WIKS+++QANAT+FLAKFYGRAGL+NL+  GP HLR
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGLLWSG W  CQAAV+AV++G  +T            
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVT------------ 110

Query: 121 NNNAPAAAPWTLNVQSPPL--KIYDIRHVS 148
               P A    +  Q+PP   K+ DIRHVS
Sbjct: 111 ----PIACDAAVTGQAPPFNNKLCDIRHVS 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 93/111 (83%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++CI++PC+ WI+++DAQ +AT+F+AKF+GRAGL++ I A P   R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNP 111
           PA+F+SLLYEACGR V+P++G++G+LW+G W  CQAAV+ VL+G ++   P
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIP 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 92/111 (82%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++CI++PC+ WI+S +AQ +AT+F+AKF+GRAGL++ I A P+   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNP 111
           PA+F+SLLYEACGR V+P++G+VGLLW+G W  CQAAV+ VL+G ++   P
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIP 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 91/107 (85%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC + CI++PCL WI+S+++Q +AT+F+AKF+GRAGL++ I + P+  R
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI 107
           PA+F+SLL+EACGR V+P++G+VG+LW+  W  CQAAV+ VL+G T+
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 2   SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRP 61
           SC  C+ LR+ C  DC+  P   + ++S   A     + K +G + +   +   PQH R 
Sbjct: 7   SCGACKFLRRKCNRDCVFSPYFSYEQASSHFAA----VHKVFGASNVSKHLLHLPQHQRN 62

Query: 62  AIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSSN 121
               ++ YEA  R+ DP+ G V  +++   +      +    G  + +N S S+ + S  
Sbjct: 63  IAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQM-KNFSYSNQNGSQL 121

Query: 122 NNAP 125
           NN P
Sbjct: 122 NNIP 125

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 3  CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
          C  C++LR+ C  DC+  P   +  + + Q  A +   + +G + +  +++  P H R  
Sbjct: 14 CAACKLLRRRCAQDCVFSP---YFPADEPQKFANVH--RVFGASNVNKMLQELPIHQRGD 68

Query: 63 IFKSLLYEACGRIVDPISGSVGLLWS 88
             S++YEA  R+ DP+ G VG + S
Sbjct: 69 AVSSMVYEANARVRDPVYGCVGAISS 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 3  CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
          C  C++LR+ C  DCI  P   +    D    A +   K +G + +  +++  P H R  
Sbjct: 9  CASCKLLRRRCAKDCIFAP---YFPPDDPHKFAIVH--KVFGASNVSKMLQELPVHQRAD 63

Query: 63 IFKSLLYEACGRIVDPISGSVG 84
             SL++EA  R+ DP+ G VG
Sbjct: 64 AVNSLVFEANARVRDPVYGCVG 85

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 3   CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
           C  C+ILR+ C D C++ P   +   +D  A  T+   + +G + +I  ++  P+  R  
Sbjct: 56  CAACKILRRRCADKCVLAP---YFPPTDP-AKFTI-AHRVFGASNIIKFLQELPESQRTD 110

Query: 63  IFKSLLYEACGRIVDPISGSVGLLW 87
              S++YEA  R+ DP+ G  G ++
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIY 135

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255581647	214	LOB domain-containing protein, putative	0.836	0.953	0.557	3e-60
388509766	287	unknown [Medicago truncatula]	0.930	0.790	0.477	2e-57
356573974	293	PREDICTED: LOB domain-containing protein	0.918	0.764	0.481	3e-57
356569068	301	PREDICTED: LOB domain-containing protein	0.913	0.740	0.467	3e-57
356545723	288	PREDICTED: LOB domain-containing protein	0.913	0.774	0.473	5e-57
224127658	233	predicted protein [Populus trichocarpa]	0.881	0.922	0.506	1e-56
225455928	272	PREDICTED: LOB domain-containing protein	0.885	0.794	0.503	8e-56
225452030	283	PREDICTED: LOB domain-containing protein	0.688	0.593	0.598	3e-55
297737817	385	unnamed protein product [Vitis vinifera]	0.881	0.558	0.477	3e-55
15221429	233	LOB domain-containing protein 42 [Arabid	0.901	0.944	0.497	3e-55

>gi|255581647|ref|XP_002531627.1| LOB domain-containing protein, putative [Ricinus communis] gi|223528745|gb|EEF30755.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 150/226 (66%), Gaps = 22/226 (9%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGCGDDC I+PCL WI+S DAQANATLFLAKFYGRAGLINLIEAGPQHLR
Sbjct: 3   MSCNGCRVLRKGCGDDCAIRPCLQWIRSPDAQANATLFLAKFYGRAGLINLIEAGPQHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PA+F+SLLYEACGRIV+P+ GSVGLLWSG W  CQ+AVD+VL+G  I Q PSS S     
Sbjct: 63  PAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAHCQSAVDSVLRGTPIVQMPSSGS----- 117

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNRRPKAPV---- 176
             + P   P  ++    PLK YDIRHVSK+        K+++R KR  NR P +P     
Sbjct: 118 --DTPQLPPQLID----PLKTYDIRHVSKEAELNKV--KSRSRFKRPVNRTPSSPTDQPT 169

Query: 177 ----VGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNR 218
               +G  S +     L SQ+ SR E    SI +   +   L+  R
Sbjct: 170 GSVRIGDLSFEPLREQLMSQMKSR-ELVTSSIIASRFLNAYLEFLR 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509766|gb|AFK42949.1| unknown [Medicago truncatula]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 164/268 (61%), Gaps = 41/268 (15%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++C I+PCL WIKS ++QANAT+FLAKFYGRAGL+NL+ AGP+HLR
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGLLWSG W+ CQA V+AVLKG  IT            
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQATVEAVLKGAPIT------------ 110

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAK-RSWNRRPKAPV--- 176
               P  +    N + PPLK YDIRHVSK+ ++A  ++ T+ R K RS  R   A +   
Sbjct: 111 ----PITSEAAANGRGPPLKAYDIRHVSKEENSAASTELTQQRVKPRSRKRSSLAKLKIQ 166

Query: 177 ---------VGRESIQDQSSWLQSQVISRSE---------DDYESIFSVETVEGSLDVNR 218
                     G E + ++S   +S +  +SE          D ES  S+       +++R
Sbjct: 167 EEEKSSNDNKGVEEVMNRSVSHESSISHQSEAVAVVDGESKDSESETSMILFRDEPELDR 226

Query: 219 NKQ---RWVQNGNGDVGLELTLCLPPTN 243
             +   R  +NG   VGLELTL L P +
Sbjct: 227 KMKPADRTGENGEEKVGLELTLGLEPVS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573974|ref|XP_003555129.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/272 (48%), Positives = 169/272 (62%), Gaps = 48/272 (17%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC +DC I+PCL WIK+ ++QANAT+FLAKFYGRAGL+NLI AGP+ LR
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPESLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGLLWSG W+ CQAAV+A+LKG+ IT            
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAILKGEPIT------------ 110

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNR------RPKA 174
               P  +    N ++PPLK YDIRHVSKD ++AN + K K R++  +NR      +PKA
Sbjct: 111 ----PITSEAAANGRAPPLKAYDIRHVSKDENSANETPKAKTRSR--FNRTGSTLIKPKA 164

Query: 175 P------VVGRESIQDQ------------SSWLQSQVISRSED-DYESIFSVETV----E 211
                   V  E ++ +            S   ++ V+   E  + ES  SVET     E
Sbjct: 165 SKGTPTGFVPIEPVEPETANRTTSHESGLSHLSEAAVMVEGESKESESDVSVETSNLFHE 224

Query: 212 GSLDVNRNKQRWVQNGNGDVGLELTLCLPPTN 243
               V +   R  ++GN ++GLELTL   P +
Sbjct: 225 EPESVAKTSDRTGESGN-EIGLELTLGFEPVS 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569068|ref|XP_003552728.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/278 (46%), Positives = 166/278 (59%), Gaps = 55/278 (19%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++C I+PCL WIKS ++QANAT+FLAKFYGRAGL+NL+ AGP+HLR
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRI++PI GSVGLLWSG W+ CQAAV+ VLKG  IT  P +S +++S 
Sbjct: 63  PAIFRSLLYEACGRILNPIYGSVGLLWSGSWQLCQAAVENVLKGAPIT--PITSEAAASG 120

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSD-------KTKARAKRSW---NR 170
                         + PPLK YDIRHVSKD ++A  S+       KT++R KR     N 
Sbjct: 121 --------------RGPPLKAYDIRHVSKDENSAAASNETQHQRVKTRSRVKRPLANNNA 166

Query: 171 RPKA---------------------------PVVGRESIQDQSSWLQSQVISRSEDDYES 203
           +PK+                            V+ R    D +   QS+  +  E   ES
Sbjct: 167 KPKSTTNENNNNKGTELGSAEPSLVACEWTEEVMNRSGSHDSTLSHQSEAANAVES--ES 224

Query: 204 IFSVETVEGSLDVNRNKQRWVQNGNGDVGLELTLCLPP 241
           + S ET E S+      +   +  + DVGLELTL   P
Sbjct: 225 MLSAETPETSILFREEPETNPKRVSDDVGLELTLGFEP 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545723|ref|XP_003541285.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/268 (47%), Positives = 168/268 (62%), Gaps = 45/268 (16%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC +DC I+PCL WIK+ ++QANAT+FLAKFYGRAGL+NLI AGP++LR
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPENLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGLLWSG W+ CQAAV+AVLKG+ IT            
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPIT------------ 110

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARA--KRSWNR--RPKA-- 174
               P  +    N ++PPLK YDIRHVSKD ++AN + KTK R+  KR+     +PKA  
Sbjct: 111 ----PITSEAAANGRAPPLKAYDIRHVSKDQNSANETPKTKTRSRFKRTSGTLIKPKASK 166

Query: 175 --------PVVGRESIQDQSSWLQ----SQVISRSEDDYESIFSVETVEGSLDVNRNKQR 222
                   P +   +   +S        + ++     + ES+ S++T     ++   +  
Sbjct: 167 GTGFVPVEPEMANRTASHESGLSHLSEATAMVEGESKESESVVSMDTS----NLIHEEPE 222

Query: 223 WV---QNGNG----DVGLELTLCLPPTN 243
           WV    +G G    ++GLELTL   P +
Sbjct: 223 WVAKTSDGTGESGNEIGLELTLGFEPVS 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127658|ref|XP_002329332.1| predicted protein [Populus trichocarpa] gi|222870786|gb|EEF07917.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/237 (50%), Positives = 159/237 (67%), Gaps = 22/237 (9%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC ++C I+PCL WIKSS++QANAT+FLAKFYGRAGL+NLI AGP+HLR
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSSESQANATVFLAKFYGRAGLMNLINAGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGL+WSG W+ CQAAV+AVLKG  IT            
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVEAVLKGAPIT------------ 110

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDP--SAANCSDKTKARAKRSWNRRPKAPVV- 177
               P  +   +N   PPLK+YDIRHVSK+   +A+N +++ + R + S + + +  V+ 
Sbjct: 111 ----PINSEAAVNGHGPPLKVYDIRHVSKEENSAASNDANRARTRCRSSVSHQSELAVLD 166

Query: 178 --GRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQ-NGNGDV 231
              +ES +  +  + S  IS  E   +    +E V  +  V   K+R V+  G+GDV
Sbjct: 167 GDSKESDESMAHDVASNGISGLELGLDLTLGLEPVSRAHHVVPVKKRRVEAYGSGDV 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455928|ref|XP_002276899.1| PREDICTED: LOB domain-containing protein 41 [Vitis vinifera]

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/260 (50%), Positives = 162/260 (62%), Gaps = 44/260 (16%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC D C ++PCL WIK+ D QANAT+FLAKFYGRAGLINLI AGP+HLR
Sbjct: 3   MSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GS GLLWSG W+ CQ+AV+AVL G  I Q  + S+ SS  
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSS-- 120

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAANCSD-----KTKARAKRSWNRRPKAP 175
                          SPPLK  DIRHVSKD ++A  S      K++ R KRS + +P+A 
Sbjct: 121 --------------MSPPLKAGDIRHVSKDENSAGSSHELHKVKSRGRFKRS-SGKPRAR 165

Query: 176 VVGRESIQDQSSWLQSQVI--------------SRSEDDYESIFSVETVEGSLDVNRNKQ 221
           V       + +  + S+                SR   + +S+ SVETVE SL       
Sbjct: 166 VESAAEFDESAGVILSRCYKSELSRDSRVSHPGSRESGEADSM-SVETVEASL------V 218

Query: 222 RWVQNGNGDVGLELTLCLPP 241
           +  ++G+ DV LELTL L P
Sbjct: 219 KPTRDGS-DVELELTLGLEP 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452030|ref|XP_002283795.1| PREDICTED: LOB domain-containing protein 41 [Vitis vinifera] gi|147795554|emb|CAN72182.1| hypothetical protein VITISV_004355 [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 132/187 (70%), Gaps = 19/187 (10%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC D+C I+PCL WIK+ ++QANAT+FLAKFYGRAGL+NLI +GP+HLR
Sbjct: 3   MSCNGCRVLRKGCSDNCTIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINSGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF SLLYEACGRIV+PI GSVGLLWSG W  CQAAV+AVLKG+ ITQ  S ++++   
Sbjct: 63  PAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITQITSEAAATG-- 120

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDP-SAAN--CSDKTKARAKRSWNRRPKAPVV 177
                         Q PPLK YDIRHVSKD  SAAN     K + R KRS  R       
Sbjct: 121 --------------QGPPLKAYDIRHVSKDENSAANDLHRAKNRCRFKRSGVRAKSGNKA 166

Query: 178 GRESIQD 184
           G  S+ +
Sbjct: 167 GTNSVAE 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737817|emb|CBI27018.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 158/264 (59%), Gaps = 49/264 (18%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           MSCNGCR+LRKGC DDC ++PCL+WIK+ ++QANAT+FLAKFYGRAGL+NL+ AGP+HLR
Sbjct: 3   MSCNGCRVLRKGCSDDCSLRPCLEWIKTPESQANATVFLAKFYGRAGLMNLLNAGPEHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+PI GSVGLLWSG W  CQ AVDAVL G  I + P  ++     
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWNHCQNAVDAVLGGSQIMEVPCDTA----- 117

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDPSAAN--CSDKTKARAKR------------ 166
                A  P        PLK YDIRH+SKD ++ +     KT++R KR            
Sbjct: 118 -----AIRPIL------PLKAYDIRHLSKDANSPHDLHKAKTRSRFKRCGARSKPHLDSA 166

Query: 167 -----SWNRRPKAPVVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQ 221
                 WN+   +PV    +    SS +Q +         +S+FSVETVE SL       
Sbjct: 167 EFCNPGWNQF--SPVDYNRTPSHDSSLIQQET--------DSMFSVETVEASLATPPKPN 216

Query: 222 RWV----QNGNGDVGLELTLCLPP 241
           + +    Q    + GLELTL   P
Sbjct: 217 QLLKSDGQTDKTEAGLELTLGFYP 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221429|ref|NP_177018.1| LOB domain-containing protein 42 [Arabidopsis thaliana] gi|29427986|sp|Q9CA30.1|LBD42_ARATH RecName: Full=LOB domain-containing protein 42; AltName: Full=ASYMMETRIC LEAVES 2-like protein 36; Short=AS2-like protein 36 gi|12324879|gb|AAG52389.1|AC011915_3 hypothetical protein; 48379-49350 [Arabidopsis thaliana] gi|17227174|gb|AAL38041.1|AF447896_1 LOB DOMAIN 42 [Arabidopsis thaliana] gi|219807148|dbj|BAH10580.1| ASYMMETRIC LEAVES2-like 36 protein [Arabidopsis thaliana] gi|332196680|gb|AEE34801.1| LOB domain-containing protein 42 [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 150/247 (60%), Gaps = 27/247 (10%)

Query: 1   MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
           +SCNGCR+LRKGC  DC I+PCL WIKS+D+QANATLFLAKFYGRAGL+NLIE+GP HLR
Sbjct: 3   ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query: 61  PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQNPSSSSSSSSS 120
           PAIF+SLLYEACGRIV+P+ GSVGL+WSG W QCQAAVDAVL G  IT  P  S+S+S  
Sbjct: 63  PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQ 122

Query: 121 NNNAPAAAPWTLNVQSPPLKIYDIRHVSKDP-----SAANCSDKTKARAKRSWNRRPKAP 175
                           PP + YDIRHV+KDP     S+ N + +  A   ++   R K  
Sbjct: 123 --------------IIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRE 168

Query: 176 VVGRESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWV-----QNGNGD 230
            V +        W   Q+ S S       F++E VE   +   N+         Q    +
Sbjct: 169 SVNQLGECSHDMW---QLPSSSATHGYGHFTLENVESRREAPFNQSSPNLGFDDQVDINE 225

Query: 231 VGLELTL 237
           VGLEL L
Sbjct: 226 VGLELRL 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.901	0.836	0.490	1.9e-51
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.913	0.957	0.483	1.1e-50
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.709	0.742	0.492	4.2e-47
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.438	0.428	0.598	3e-37
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.438	0.433	0.607	1e-36
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.438	0.445	0.588	7.2e-36
TAIR|locus:2090852	121	LBD23 "LOB domain-containing p	0.323	0.652	0.297	7.4e-07
TAIR|locus:2090812	121	LBD24 "LOB domain-containing p	0.323	0.652	0.297	7.4e-07
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.331	0.470	0.290	1.4e-06
TAIR|locus:2074648	165	LBD21 "LOB domain-containing p	0.336	0.496	0.321	8.8e-06

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 124/253 (49%), Positives = 161/253 (63%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             MSCNGCR+LRKGC +DC I+PCL WIKS +AQANAT+FLAKFYGRAGL+NLI AGP HLR
Sbjct:     3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQXXXXXXXXXXX 120
             P IF+SLL+EACGRIV+PI GSVGLLWSG W+ CQ AV+AV+KG+ + +           
Sbjct:    63 PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAA----- 117

Query:   121 XXXXXXXXXWTLNVQSPPLKIYDIRHVSKDPSAA----NCSD----KTKARAKRSWNRRP 172
                       T+  Q PPLKIYDIRH+SKD ++A      +D    KT+ RAKR      
Sbjct:   118 ----------TIG-QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAI 165

Query:   173 KAPVVGR--ESIQDQSSWLQSQVISRSEDDYESIFSVETVEGSLDVNRNKQRWVQNGNGD 230
             +A   G+  E+  D S   QS++++  E +     S E+     +V       V+ G+G+
Sbjct:   166 QAESEGKSDEASHDSSLSHQSEIVAAHEGE-----SKESESNVSEVLAFSPPAVK-GSGE 219

Query:   231 VGLELTLCLPPTN 243
             + L+LTL L P +
Sbjct:   220 IKLDLTLRLEPVS 232

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 118/244 (48%), Positives = 145/244 (59%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             +SCNGCR+LRKGC  DC I+PCL WIKS+D+QANATLFLAKFYGRAGL+NLIE+GP HLR
Sbjct:     3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQXXXXXXXXXXX 120
             PAIF+SLLYEACGRIV+P+ GSVGL+WSG W QCQAAVDAVL G  IT            
Sbjct:    63 PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQ 122

Query:   121 XXXXXXXXXWTLNVQSPPLKIYDIRHVSKDPSAANCSDKTKARAKRSWNRRPKAPVVGRE 180
                             PP + YDIRHV+KDP+    S +  A    +   + +     RE
Sbjct:   123 II--------------PPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRE 168

Query:   181 SIQD--QSSWLQSQVISRSEDDYESIFSVETVEGSLDV--NRNKQRWVQNGNGD---VGL 233
             S+    + S    Q+ S S       F++E VE   +   N++      +   D   VGL
Sbjct:   169 SVNQLGECSHDMWQLPSSSATHGYGHFTLENVESRREAPFNQSSPNLGFDDQVDINEVGL 228

Query:   234 ELTL 237
             EL L
Sbjct:   229 ELRL 232

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 98/199 (49%), Positives = 127/199 (63%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             MSCNGCR+LRKGC ++C I+PCL WIKS+++QANAT+FLAKFYGRAGL+NL+  GP HLR
Sbjct:     3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTITQXXXXXXXXXXX 120
             PAIF+SLLYEACGRIV+PI GSVGLLWSG W  CQAAV+AV++G  +T            
Sbjct:    63 PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG-- 120

Query:   121 XXXXXXXXXWTLNVQSPPL--KIYDIRHVS------KDPSAANCSDKTKARA-KRSWNRR 171
                           Q+PP   K+ DIRHVS      K  S   C ++   R+     +  
Sbjct:   121 --------------QAPPFNNKLCDIRHVSSRDENVKRRSRGACKEERNVRSLSHESSLS 166

Query:   172 PKAPVVGRESIQDQ-SSWL 189
              ++PV   E+  ++  +W+
Sbjct:   167 HESPVSSEETTTEEPKTWI 185

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 64/107 (59%), Positives = 92/107 (85%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             MSCNGCR+LRKGC ++CI++PC+ WI+++DAQ +AT+F+AKF+GRAGL++ I A P   R
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI 107
             PA+F+SLLYEACGR V+P++G++G+LW+G W  CQAAV+ VL+G ++
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 65/107 (60%), Positives = 91/107 (85%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             MSCNGCR+LRKGC ++CI++PC+ WI+S +AQ +AT+F+AKF+GRAGL++ I A P+   
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI 107
             PA+F+SLLYEACGR V+P++G+VGLLW+G W  CQAAV+ VL+G ++
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 63/107 (58%), Positives = 91/107 (85%)

Query:     1 MSCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLR 60
             MSCNGCR+LRKGC + CI++PCL WI+S+++Q +AT+F+AKF+GRAGL++ I + P+  R
Sbjct:     1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query:    61 PAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI 107
             PA+F+SLL+EACGR V+P++G+VG+LW+  W  CQAAV+ VL+G T+
Sbjct:    61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL 107

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2090852 LBD23 "LOB domain-containing protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query:     3 CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
             C  C+ LR+ C  DC+  P   +   +D Q  A +   + YG   +  +++  P   R  
Sbjct:     6 CAACKYLRRRCPKDCVFSP---YFPPNDPQKFACVH--RIYGAGNVSKMLQQLPDQTRAE 60

Query:    63 IFKSLLYEACGRIVDPISGSVGLL 86
               +SL +EA  R+ DP+ G VG++
Sbjct:    61 AVESLCFEAKCRVDDPVYGCVGII 84

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090812 LBD24 "LOB domain-containing protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query:     3 CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
             C  C+ LR+ C  DC+  P   +   +D Q  A +   + YG   +  +++  P   R  
Sbjct:     6 CAACKYLRRRCPKDCVFSP---YFPPNDPQKFACVH--RIYGAGNVSKMLQQLPDQTRAE 60

Query:    63 IFKSLLYEACGRIVDPISGSVGLL 86
               +SL +EA  R+ DP+ G VG++
Sbjct:    61 AVESLCFEAKCRVDDPVYGCVGII 84

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query:     3 CNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPA 62
             C  C++LR+ C  DC+  P   +  + + Q  A +   + +G + +  +++  P H R  
Sbjct:    14 CAACKLLRRRCAQDCVFSP---YFPADEPQKFANVH--RVFGASNVNKMLQELPIHQRGD 68

Query:    63 IFKSLLYEACGRIVDPISGSVGLLWS 88
                S++YEA  R+ DP+ G VG + S
Sbjct:    69 AVSSMVYEANARVRDPVYGCVGAISS 94

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2074648 LBD21 "LOB domain-containing protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 28/87 (32%), Positives = 44/87 (50%)

Query:     2 SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRP 61
             SC  C++L++ C   CI  P   + +SSD    A +   K +G + +  L+   P+  R 
Sbjct:    11 SCAACKLLKRRCTPTCIFAP---YFRSSDLITFAKVH--KVFGASNVSKLLGEVPEEQRQ 65

Query:    62 AIFKSLLYEACGRIVDPISGSVGLLWS 88
                 SL YEA  R+ DP+ G +G + S
Sbjct:    66 ETVNSLAYEAEVRLKDPVYGCIGAIAS 92

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CA30	LBD42_ARATH	No assigned EC number	0.4979	0.9016	0.9442	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	7e-35

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  119 bits (302), Expect = 7e-35
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 2   SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRP 61
            C  C+ LR+ C  DC++ P          Q      + K +G + +  L++A P   R 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFP-----AEQPARFANVHKLFGASNVTKLLKALPPEQRD 55

Query: 62  AIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDAVLKGKTI 107
              +SLLYEA  R  DP+ G VG++WS + +  Q   +  L    +
Sbjct: 56  DAMRSLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.3e-45  Score=291.70  Aligned_cols=101  Identities=27%  Similarity=0.544  Sum_probs=96.2

Q ss_pred             CcccchhcccCCCCCCccccCCCCcCCChHHHHHHHHHHHHhccccHHHHHhcCCCCChHHHHHHHHHHhhccccCCCCC
Q 045357            2 SCNGCRILRKGCGDDCIIKPCLDWIKSSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISG   81 (244)
Q Consensus         2 ~CAACK~lRRrC~~dCilAPYFP~~~s~e~q~fa~~FvhKvFG~SNV~kmL~~lp~~~R~~A~~SLiYEA~aR~rDPVyG   81 (244)
                      +|||||||||+|+++|+||||||   ++++++|.  +||||||++||+|||+++|+++|+++|+||+|||++|++|||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP---~~~~~~F~--~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G   75 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFP---ADQPQRFA--NVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG   75 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCC---hhHHHHHH--HHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence            79999999999999999999996   67778776  48999999999999999999999999999999999999999999


Q ss_pred             chHHhhhchhHHHHHHHHHHHcCCCc
Q 045357           82 SVGLLWSGKWEQCQAAVDAVLKGKTI  107 (244)
Q Consensus        82 cvG~I~~Lq~qi~qaavE~vL~g~~I  107 (244)
                      |+|+||.|+|||+++++|+++.+++|
T Consensus        76 c~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   76 CVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999988876

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00