Citrus Sinensis ID: 045400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEc
Coil and Loop (DISEMBL)
mgckssekpiakpkpkhrkglwspeedqRLKNYVlqhghpcwssvpinaglqrngkscRLRWINylrpglkrgvfnmqeEETILTLHRLLGNKWSqiaqhlpgrtdneIKNYWHSHLKKKLAKLEEMEaanattpssenmesstspnnnpstrsssYESLHhmekssagstdqcatqgqksclpklLFAEWLsldhandgsfanSFEQVAskegfnnnnnnnnnnnnnnnnnnqnsnlvqdssdtfmngylsnegafggdfihngfnnSFVDEMlssrfkfedhqfsgigfvdsisgddvcsalnmnndvmyi
Flexible Loop (DISEMBL)
mgckssekpiakpkpkhrkglwsPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANattpssenmesstspnnnpSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Low Complexity Region (SEG)
MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHlkkklakleemeaaNAttpssenmesstspnnnpstrsssYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFnnnnnnnnnnnnnnnnnnqnsnLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Disordered region (IsUnstruct)
*****************************LKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK**************************************************************SCLPKLLFAEWLSLDHA************************************************FMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNM*******
Disordered Region (DISOPRED)
****************HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK**********************************************************************************************************************************************************************************GDDVCSALNMNNDVMYI
Disordered Region (DISEMBL)
*********************WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM***************************************************QKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Disordered Region (DISPRO)
********PIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKL**********************************************************LPKLLFAEWLSL****************************************************************GDF***GFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSALNMNNDVMYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9M0K4	283	Transcription factor LAF1	yes	no	0.559	0.618	0.544	7e-51
Q8LPH6	352	Transcription factor MYB8	no	no	0.431	0.383	0.58	1e-42
P20027	302	Myb-related protein Hv33	N/A	no	0.345	0.357	0.703	7e-42
Q9LXV2	280	Transcription factor MYB4	no	no	0.354	0.396	0.657	9e-40
P20024	340	Myb-related protein Zm1 O	N/A	no	0.389	0.358	0.587	8e-38
P81395	274	Myb-related protein 330 O	N/A	no	0.332	0.379	0.682	2e-37
O49608	274	Transcription factor MYB3	no	no	0.335	0.383	0.647	3e-37
Q9S9K9	257	Transcription factor MYB3	no	no	0.424	0.517	0.537	4e-37
Q38851	236	Transcription repressor M	no	no	0.329	0.436	0.669	9e-37
Q9SZP1	282	Transcription repressor M	no	no	0.488	0.542	0.484	1e-36

>sp|Q9M0K4|LAF1_ARATH Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2

 Score =  201 bits (510), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 134/189 (70%), Gaps = 14/189 (7%)

Query: 16  KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVF 75
           +HRKGLWSPEED++L++++L +GH CW++VPI AGLQRNGKSCRLRWINYLRPGLKR + 
Sbjct: 9   RHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMI 68

Query: 76  NMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTP 135
           + +EEETILT H  LGNKWSQIA+ LPGRTDNEIKNYWHSHLKKK  K + ++ A + +P
Sbjct: 69  SAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKSISP 128

Query: 136 SSENMESSTSP-NNNPSTRSS----SYESLHHMEKSSAGS------TDQCATQGQKSCLP 184
            S +  S  +    NP T  S    S++ L   + SS         + QC++  +   +P
Sbjct: 129 PSSSSSSLVACGKRNPETLISNHVFSFQRLLENKSSSPSQESNGNNSHQCSSAPE---IP 185

Query: 185 KLLFAEWLS 193
           +L F+EWLS
Sbjct: 186 RLFFSEWLS 194

Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses. Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 103/150 (68%), Gaps = 15/150 (10%)

Query: 14  KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
           K K RKGLWSPEED++L NY+ +HGH CWSSVP  AGLQR GKSCRLRWINYLRP LKRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 74  VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK---------- 123
            F+  EE  I+ LH  LGN+WSQIA  LPGRTDNEIKN+W+S LKKKL +          
Sbjct: 69  AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKP 128

Query: 124 -----LEEMEAANATTPSSENMESSTSPNN 148
                L+ +   +    SSE ++S+ S NN
Sbjct: 129 LITNELQSLNVIDQKLTSSEVVKSTGSINN 158

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 14  KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
           +PK RKGLWSPEED++L N++++HG  CWSSVP  A L R GKSCRLRWINYLRP LKRG
Sbjct: 11  QPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRG 70

Query: 74  VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
            F+ QEE+ I+ LH++LGN+WSQIA HLPGRTDNEIKN+W+S +KKKL
Sbjct: 71  CFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKL 118

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1

 Score =  164 bits (414), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 88/111 (79%)

Query: 16  KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVF 75
           K +KGLWSPEED +L  Y+L +G  CWS V  NAGLQR GKSCRLRWINYLRP LKRG F
Sbjct: 17  KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAF 76

Query: 76  NMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEE 126
           + QEE+ I+  H +LGN+WSQIA  LPGRTDNEIKN+W+S +KK+L K+ +
Sbjct: 77  SPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSD 127

Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels.

Arabidopsis thaliana (taxid: 3702)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 94/126 (74%), Gaps = 4/126 (3%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           +G W+P+ED RL  Y+ +HGH  W ++P  AGL R GKSCRLRWINYLRP LKRG F  +
Sbjct: 16  RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 75

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEA----ANATT 134
           EEE I+ LH LLGNKWS+IA  LPGRTDNEIKN W++HLKKK+A+ E+ +A     +A T
Sbjct: 76  EEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGT 135

Query: 135 PSSENM 140
           P++  +
Sbjct: 136 PATAPL 141

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 81/104 (77%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EEDQRL NY+  HG  CW S+P  AGL R GKSCRLRWINYLRP LKRG F  +
Sbjct: 14  KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLA 122
           E+E I+ LH LLGNKWS IA  LPGRTDNEIKNYW++H+K+KL 
Sbjct: 74  EDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLV 117

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 84/105 (80%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EED +L +Y+  HG  CW S+P +AGLQR GKSCRLRWINYLRP LKRG F ++
Sbjct: 14  KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLE 73

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123
           E++ I+ LH LLGNKWS IA  LPGRTDNEIKNYW++H+K+KL +
Sbjct: 74  EDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLR 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 12/145 (8%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EEDQ L +Y+ +HG  CW S+P  AGLQR GKSCRLRW+NYLRP LKRG F  +
Sbjct: 14  KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEE 73

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSE 138
           E+E I+ LH LLGNKWS IA  LPGRTDNEIKNYW++H+K+KL        +    P+S 
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL-------LSRGIDPNSH 126

Query: 139 NM--ESSTSPNNNPSTRSSSYESLH 161
            +  ES  SP+   S ++   E++H
Sbjct: 127 RLINESVVSPS---SLQNDVVETIH 148

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  154 bits (389), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 81/103 (78%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EEDQRL +Y+  HG  CW S+P +AGL R GKSCRLRWINYLRP LKRG F   
Sbjct: 14  KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
           E++ I+ LH LLGNKWS IA  LPGRTDNEIKNYW++H+K+KL
Sbjct: 74  EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 102/165 (61%), Gaps = 12/165 (7%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EED+RL  Y+  HG  CW S+P  AGL R GKSCRLRWINYLRP LKRG F  +
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLA----------KLEEME 128
           E+E I+ LH LLGNKWS IA  LPGRTDNEIKNYW++H+++KL            ++E  
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESS 133

Query: 129 AANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQ 173
           A+  + P+   +E  TS   N S  S+      H   S  G +++
Sbjct: 134 ASQDSKPT--QLEPVTSNTINISFTSAPKVETFHESISFPGKSEK 176

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
225470163	298	PREDICTED: transcription factor LAF1 [Vi	0.916	0.963	0.526	1e-83
224122372	325	predicted protein [Populus trichocarpa]	0.894	0.861	0.558	1e-81
224134815	295	predicted protein [Populus trichocarpa]	0.904	0.959	0.544	2e-80
356559815	291	PREDICTED: transcription factor LAF1-lik	0.881	0.948	0.465	3e-68
359806896	270	uncharacterized protein LOC100790724 [Gl	0.817	0.948	0.479	5e-67
356575957	270	PREDICTED: transcription factor LAF1 [Gl	0.830	0.962	0.466	2e-64
356529217	366	PREDICTED: transcription factor RAX1-lik	0.840	0.718	0.455	2e-62
357498459	283	MYB transcription factor [Medicago trunc	0.683	0.756	0.532	4e-58
110931832	138	MYB transcription factor MYB94 [Glycine	0.415	0.942	0.753	3e-54
357164935	285	PREDICTED: transcription factor LAF1-lik	0.600	0.659	0.512	5e-54

>gi|225470163|ref|XP_002267853.1| PREDICTED: transcription factor LAF1 [Vitis vinifera] gi|302143895|emb|CBI22756.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/323 (52%), Positives = 213/323 (65%), Gaps = 36/323 (11%)

Query: 1   MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL 60
           MGC S EK  +K KPKHRKGLWSPEED RL+NYVL++G  CWSSVP+NAGLQRNGKSCRL
Sbjct: 1   MGCNSLEK--SKTKPKHRKGLWSPEEDARLRNYVLKYGLGCWSSVPVNAGLQRNGKSCRL 58

Query: 61  RWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120
           RWINYLRPGLKRG+F ++EEETI+ LHRLLGNKWSQIAQ+ PGRTDNEIKNYWHS LKKK
Sbjct: 59  RWINYLRPGLKRGMFTIEEEETIMALHRLLGNKWSQIAQNFPGRTDNEIKNYWHSCLKKK 118

Query: 121 LAKLEEMEA---ANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQ 177
           + K +EME    +     +S++++SSTS    PS +   +ES  +M+ SS+  TDQ   Q
Sbjct: 119 VVKAQEMEVHMNSQCINSNSQSIDSSTS-QEKPSIQLPGFESFENMKGSSSTDTDQSIPQ 177

Query: 178 --------GQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNN 229
                    Q+S LPK+LFAEWLSLDH     F NS E V SK+  + ++    +N    
Sbjct: 178 MLDCPRVDTQESPLPKILFAEWLSLDHIYGQLFVNSGESVISKDTLDQHDPTFQDN---- 233

Query: 230 NNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGI 289
                           F +G+L NE ++ G+ +H+G +N    +M S +FKFE  Q  G 
Sbjct: 234 ----------------FTHGFLLNEESYVGE-LHHGLSNDSSSDMFSPQFKFES-QTPGS 275

Query: 290 GFVDSISGDDVCSALNMNNDVMY 312
           G  D + GD++CS  NMN  VMY
Sbjct: 276 GICDFVYGDEICSDFNMNGHVMY 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122372|ref|XP_002318818.1| predicted protein [Populus trichocarpa] gi|222859491|gb|EEE97038.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/326 (55%), Positives = 211/326 (64%), Gaps = 46/326 (14%)

Query: 1   MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL 60
           MGCKSS+KP  KPK +HRKGLWSPEEDQRL +YV QHGH CWSSVPINAGLQR GKSCRL
Sbjct: 33  MGCKSSDKP--KPKLRHRKGLWSPEEDQRLGSYVFQHGHGCWSSVPINAGLQRTGKSCRL 90

Query: 61  RWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120
           RWINYLRPGLKRG F+  EEETILTLHR+LGNKWSQIAQHLPGRTDNEIKN+WHS+LKKK
Sbjct: 91  RWINYLRPGLKRGAFSTDEEETILTLHRMLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKK 150

Query: 121 LAKLEEMEAANATTPS---SENMESSTSPNNNPSTRSSSYESLHHMEKSSAG-------- 169
           L K E ME+ N T  +   S+NM+ S SP      +  S ES  +MEK S          
Sbjct: 151 LFKAEGMESPNKTQSASSNSDNMDLSPSPKR---LKMQSPESSMNMEKPSTDIDRPVLPR 207

Query: 170 STDQCATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNN 229
             D      + S LPK++FAEWLSLD     SFA+S E V SK  F++N +         
Sbjct: 208 MFDYLKEPNRSSLLPKVMFAEWLSLD-----SFASSGEPVVSKSTFDHNPS--------- 253

Query: 230 NNNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGI 289
                     QD+S  FM+ YL  EGAFGGD+  N  ++    ++ SS FKFE  Q  G 
Sbjct: 254 ---------FQDTS--FMHHYLLEEGAFGGDY-QNSLSDGSSGDIFSSEFKFES-QSPGN 300

Query: 290 GFVDSISGDDVCSALNMNN--DVMYI 313
            F D  SG+D+C   N  N  DVMYI
Sbjct: 301 EF-DFSSGEDLCREFNFRNIGDVMYI 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134815|ref|XP_002321912.1| predicted protein [Populus trichocarpa] gi|222868908|gb|EEF06039.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 211/325 (64%), Gaps = 42/325 (12%)

Query: 1   MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL 60
           MGCKSS+ P  KPKPKHRKGLWSPEEDQRL+NYVL+HGH CWSSVPINAGLQRNGKSCRL
Sbjct: 1   MGCKSSDMPKLKPKPKHRKGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRL 60

Query: 61  RWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120
           RWINYLRPGLKRG F+ QEEETIL LH +LGNKWSQIAQHLPGRTDNEIKN+WHS+LKK 
Sbjct: 61  RWINYLRPGLKRGTFSAQEEETILALHHMLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKN 120

Query: 121 LAKLEEMEAANATTPSSEN---MESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQ 177
           L K E ME+   T   S N   ME S SP      ++SS+ES    EKSSA         
Sbjct: 121 LLKDEGMESLKRTKSDSSNSDIMELSPSP-KRLKMQASSFESSMSAEKSSADINRSVPQM 179

Query: 178 GQ-------KSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNN 230
            +        S LPK++FAEWLSL+     SFA+  E + SK   ++N            
Sbjct: 180 FESPNEPKGSSLLPKVMFAEWLSLE-----SFASLGEPMDSKSTLDHN------------ 222

Query: 231 NNNQNSNLVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIG 290
                  + Q   D F++ YL +E AFGG++ HN  ++    ++ SS F+FE  Q  G  
Sbjct: 223 ------TIFQ---DNFLHDYLLDERAFGGEY-HNSLSDGSSGDIFSSEFRFES-QSPGNE 271

Query: 291 FVDSISGDDVCSALNMNN--DVMYI 313
           F D  SG+D+CS  N++N  DVMYI
Sbjct: 272 F-DFSSGEDLCSDFNLSNISDVMYI 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559815|ref|XP_003548192.1| PREDICTED: transcription factor LAF1-like [Glycine max]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/316 (46%), Positives = 198/316 (62%), Gaps = 40/316 (12%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
           +P+ K KPK+RKGLWSPEED +L+N++++HGH CWSSVPI AGLQRNGKSCRLRWINYLR
Sbjct: 4   QPLEKAKPKYRKGLWSPEEDNKLRNHIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLR 63

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
           PGLKRGVF+  EE+TI+ LH +LGNKWSQIAQHLPGRTDNEIKNYWHS+LKKK  K +EM
Sbjct: 64  PGLKRGVFSKHEEDTIMVLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKEIKAKEM 123

Query: 128 EA---ANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTD---QCATQGQKS 181
           E+       + SS+ ME+S SP    +T+  SY  L +++KS A + +   Q     +++
Sbjct: 124 ESDKEIQHASSSSDTMENSLSP-QKLATQDPSYSLLENLDKSIAHNDNFFSQSYNFSKEA 182

Query: 182 C-----LPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNS 236
           C     LPKLLF+EWLS+D  + GS  NS + +     F+ N+                 
Sbjct: 183 CQSSLPLPKLLFSEWLSVDQVDGGSSVNSDDSLVLGNEFDQNS----------------- 225

Query: 237 NLVQDSSDTFMNGYLSN-EGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSI 295
                   TF    +   E  FG ++ HN   +S   E+ +S+ K   +Q  G  F++ I
Sbjct: 226 --------TFQEAIMHMLEENFGEEY-HNSLIHSSTTEVYNSQLK-STNQVDGSDFINCI 275

Query: 296 SGDDVCSALNMNNDVM 311
            G+++CS  ++ N  M
Sbjct: 276 PGNELCSNFSLTNHAM 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806896|ref|NP_001241320.1| uncharacterized protein LOC100790724 [Glycine max] gi|255644961|gb|ACU22980.1| unknown [Glycine max]

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 152/317 (47%), Positives = 194/317 (61%), Gaps = 61/317 (19%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
           +P+ K K KH+KGLWSPEED +L+N++L+HGH CWSSVPI AGLQRNGKSCRLRWINYLR
Sbjct: 4   QPMEKGKAKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLR 63

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
           PGLKRG F+ QEEETILTLH +LGNKWSQI+QHLPGRTDNEIKNYWHS+LKK++AK +EM
Sbjct: 64  PGLKRGKFSKQEEETILTLHDMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEM 123

Query: 128 EAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQ-------- 179
           E+ N                         Y S       S+ S  + ATQGQ        
Sbjct: 124 ESHNQI----------------------KYASSSSDTIDSSNSIQKLATQGQQIYNFTKE 161

Query: 180 --KSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSN 237
             +S LPKLLFAEWLSLDH N    ANS E +  + GF++N+                  
Sbjct: 162 SCQSSLPKLLFAEWLSLDHVNS---ANSVESLGLRNGFDHNST----------------- 201

Query: 238 LVQDSSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISG 297
             Q+++   M     +E  FGGD+ +   +N    EM +S+ K+ + Q    G++  + G
Sbjct: 202 -FQEAAIHDM-----SEVPFGGDY-NRCVSNIPAPEMFNSQLKYAN-QMVENGYIHCMPG 253

Query: 298 DDVCSALNMNND-VMYI 313
            D+ S  +M+ND +MYI
Sbjct: 254 FDLSSNFSMSNDAIMYI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575957|ref|XP_003556102.1| PREDICTED: transcription factor LAF1 [Glycine max]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/313 (46%), Positives = 196/313 (62%), Gaps = 53/313 (16%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
           +P+ K KPKH+KGLWSPEED +L+N++L+HGH CWSSVPI AGLQRNGKSCRLRWINYLR
Sbjct: 4   QPLEKGKPKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLR 63

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
           PGLKRG F+ QEEETILTLH +LGNKWS+I+QHLPGRTDNEIKNYWHS+LKK++AK +EM
Sbjct: 64  PGLKRGKFSKQEEETILTLHHMLGNKWSRISQHLPGRTDNEIKNYWHSYLKKRVAKAKEM 123

Query: 128 EAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQC------ATQGQKS 181
           E+ N    +S + ++  S        S S ++L            QC        +  +S
Sbjct: 124 ESHNQIKYASSSSDTMDS--------SHSLQNL----------ATQCPLNYNFTKEASQS 165

Query: 182 CLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQD 241
            LPKLLFAEWLSLDH N    ANS + +  + GF+ N++              +   + D
Sbjct: 166 SLPKLLFAEWLSLDHLNS---ANSVDSLGLRNGFDQNSSF-------------HEAAIHD 209

Query: 242 SSDTFMNGYLSNEGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVC 301
            S+            FGG++ +   +N    EM +S+ K+ + Q    G++  + G D+ 
Sbjct: 210 MSEV----------PFGGEY-NRCVSNISAPEMFNSQLKYGN-QMVENGYIHCMPGVDLS 257

Query: 302 SALNMNND-VMYI 313
           S  +++ND +MYI
Sbjct: 258 SNFSISNDAIMYI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529217|ref|XP_003533192.1| PREDICTED: transcription factor RAX1-like [Glycine max]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/305 (45%), Positives = 188/305 (61%), Gaps = 42/305 (13%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
           KP+ K KPK+RKGLWSPEED +L+N++++HGH CWSSVPI AGLQRNGKSCRLRWINYLR
Sbjct: 4   KPLEKAKPKYRKGLWSPEEDNKLRNHIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLR 63

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
           PGLKRGVF+  E++TI+ LH +LGNKWSQIAQHLPGRTDNE+KNYWHS+LKKK+ K +EM
Sbjct: 64  PGLKRGVFSKHEKDTIMALHHMLGNKWSQIAQHLPGRTDNEVKNYWHSYLKKKVIKAKEM 123

Query: 128 EAANATT---PSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLP 184
           E+         SS+ +E++ SP    +T+ SSY   ++  K +  S+           LP
Sbjct: 124 ESDKQIQHAGSSSDTVENALSP-QKLATQDSSY-GFYNFSKEAYQSS---------LPLP 172

Query: 185 KLLFAEWLSLDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQDSSD 244
           KLLF+EWLS+D  N G   NS + +     F+ N+                         
Sbjct: 173 KLLFSEWLSVDQVNGGISVNSDDSLVLGNEFDQNS------------------------- 207

Query: 245 TFMNGYLSN-EGAFGGDFIHNGFNNSFVDEMLSSRFKFEDHQFSGIGFVDSISGDDVCSA 303
           TF    +   E  FG ++ HN   +S   E+ +S+ K   +Q  G  F++ I G+++ S 
Sbjct: 208 TFQEAIMHMLEENFGEEY-HNRLIHSSTTEVYNSQIK-STNQMDGSDFMNCIPGNELRSN 265

Query: 304 LNMNN 308
            ++ N
Sbjct: 266 FSLTN 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498459|ref|XP_003619518.1| MYB transcription factor [Medicago truncatula] gi|355494533|gb|AES75736.1| MYB transcription factor [Medicago truncatula]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 156/229 (68%), Gaps = 15/229 (6%)

Query: 1   MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL 60
           MG + +EK     K K+RKGLWSPEED +L NY+++HGH CWSSVPI AGLQRNGKSCRL
Sbjct: 1   MGFQLAEKV---QKSKYRKGLWSPEEDNKLSNYIMKHGHSCWSSVPIKAGLQRNGKSCRL 57

Query: 61  RWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120
           RWINYLRPGLKRG+ +  EE+ I+TLH++LGNKWSQIAQ LPGRTDNEIKNYWHS+LKKK
Sbjct: 58  RWINYLRPGLKRGMLSKHEEDKIMTLHQMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKK 117

Query: 121 LAKLEEMEA---ANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGS-TDQ--- 173
             K +++E+       + SS+ M S  S     + +   Y    ++ KS+A + +DQ   
Sbjct: 118 EVKSKDIESHTQIQYASSSSDTMNSLLS-TQKYAIQDPKYVLPENINKSTATTHSDQSIS 176

Query: 174 ----CATQGQKSCLPKLLFAEWLSLDHANDGSFANSFEQVASKEGFNNN 218
                A +   S LPKLLF+EWLSLD  N  +  NS + +  K G++ N
Sbjct: 177 KNYNTANEVCHSSLPKLLFSEWLSLDQVNGCNSLNSDDSLVLKNGYDQN 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110931832|gb|ABH02915.1| MYB transcription factor MYB94 [Glycine max]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 116/130 (89%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
           +P+ K KPKH+KGLWSPEED +L+N++L+HGH CWSSVPI AGLQRNGKSCRLRWINYLR
Sbjct: 4   QPLEKGKPKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLR 63

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
           PGLKRG F+ QEEETILTLH +LGNKWS+I+QHLPGRTDNEIKNYWHS+LKK++AK +EM
Sbjct: 64  PGLKRGKFSKQEEETILTLHHMLGNKWSRISQHLPGRTDNEIKNYWHSYLKKRVAKAKEM 123

Query: 128 EAANATTPSS 137
           E+ N    +S
Sbjct: 124 ESHNQIKYAS 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164935|ref|XP_003580215.1| PREDICTED: transcription factor LAF1-like [Brachypodium distachyon]

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 142/205 (69%), Gaps = 17/205 (8%)

Query: 1   MGCKSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL 60
           MGCKS +KP    K  HRKGLWSPEEDQ+L++Y++++GH CWS+VP+ AGLQRNGKSCRL
Sbjct: 1   MGCKSCQKP----KAHHRKGLWSPEEDQKLRDYIIRYGHSCWSTVPVKAGLQRNGKSCRL 56

Query: 61  RWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120
           RWINYLRPGLK G+F+ +EEET+++LH  LGNKWS+IAQHLPGRTDNE+KNYW+S+LKK 
Sbjct: 57  RWINYLRPGLKHGMFSQEEEETVMSLHATLGNKWSRIAQHLPGRTDNEVKNYWNSYLKK- 115

Query: 121 LAKLEEMEAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCAT---- 176
             ++E  +AA A +  S++ +S T+  +    +           +SS+     C T    
Sbjct: 116 --RVEGAQAAPAKSAGSDSPQSPTAALSESGVKRPENSGSSGPPESSSADDSSCLTGPAG 173

Query: 177 ------QGQKSCLPKLLFAEWLSLD 195
                 +     LPK++FA+WL +D
Sbjct: 174 AAAALIRPHAPVLPKVMFADWLDMD 198

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2145121	268	MYB19 "myb domain protein 19"	0.335	0.391	0.771	3.6e-51
TAIR|locus:2101273	261	MYB45 "myb domain protein 45"	0.335	0.402	0.704	2.4e-48
TAIR|locus:2131844	283	LAF1 "LONG AFTER FAR-RED LIGHT	0.341	0.378	0.733	4.7e-48
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.325	0.324	0.705	4.6e-40
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.325	0.332	0.696	6.1e-39
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.325	0.289	0.725	7.8e-39
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.325	0.277	0.630	1.1e-38
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.325	0.278	0.705	2.4e-37
TAIR|locus:2174195	327	MYB43 "myb domain protein 43"	0.316	0.302	0.606	1.3e-36
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.316	0.282	0.646	1.7e-36

TAIR|locus:2145121 MYB19 "myb domain protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
 Identities = 81/105 (77%), Positives = 95/105 (90%)

Query:    12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLK 71
             +PK + RKGLWSPEEDQ+LK+++L  GH CW++VPI AGLQRNGKSCRLRWINYLRPGLK
Sbjct:     7 RPKQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLK 66

Query:    72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116
             RG F+ +EEETILTLH  LGNKWS+IA++LPGRTDNEIKNYWHS+
Sbjct:    67 RGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSY 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2101273 MYB45 "myb domain protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
 Identities = 74/105 (70%), Positives = 93/105 (88%)

Query:    12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLK 71
             K K K RKGLWSPEED++L+++VL++GH CWS++P+ AGLQRNGKSCRLRW+NYLRPGLK
Sbjct:    13 KSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVNYLRPGLK 72

Query:    72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116
             + +F  QEE  +L+LH +LGNKWSQI++ LPGRTDNEIKNYWHS+
Sbjct:    73 KSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSN 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2131844 LAF1 "LONG AFTER FAR-RED LIGHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 80/109 (73%), Positives = 95/109 (87%)

Query:    10 IAKPK--PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
             +AK K   +HRKGLWSPEED++L++++L +GH CW++VPI AGLQRNGKSCRLRWINYLR
Sbjct:     1 MAKTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLR 60

Query:    68 PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116
             PGLKR + + +EEETILT H  LGNKWSQIA+ LPGRTDNEIKNYWHSH
Sbjct:    61 PGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSH 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 72/102 (70%), Positives = 84/102 (82%)

Query:    14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
             K K RKGLWSPEED++L NY+ +HGH CWSSVP  AGL+R GKSCRLRWINYLRP LKRG
Sbjct:     9 KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRG 68

Query:    74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
              F+ +E+  I+ LH +LGN+WSQIA  LPGRTDNEIKN W+S
Sbjct:    69 AFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNS 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 71/102 (69%), Positives = 87/102 (85%)

Query:    14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
             K K ++GLWSPEED++L  Y+  HGHP WSSVP  AGLQR GKSCRLRWINYLRP L+RG
Sbjct:    19 KHKVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 78

Query:    74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
              FN +EE+ I+ +HR+LGNKW+QIA+HLPGRTDNE+KN+W+S
Sbjct:    79 SFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNS 120

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 74/102 (72%), Positives = 83/102 (81%)

Query:    14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
             K K RKGLWSPEED++L NY+ +HGH CWSSVP  AGLQR GKSCRLRWINYLRP LKRG
Sbjct:     9 KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query:    74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
              F+  EE  I+ LH  LGN+WSQIA  LPGRTDNEIKN+W+S
Sbjct:    69 AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNS 110

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 70/111 (63%), Positives = 86/111 (77%)

Query:    14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG---------LQRNGKSCRLRWIN 64
             K K ++GLWSPEED++L NY+  +GH CWSSVP +AG         LQR GKSCRLRWIN
Sbjct:     9 KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWIN 68

Query:    65 YLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
             YLRP LKRG F+ QE   I+ LH +LGN+W+QIA+HLPGRTDNE+KN+W+S
Sbjct:    69 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNS 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 72/102 (70%), Positives = 82/102 (80%)

Query:    14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
             K K RKGLWSPEED++L  ++  HGH CWSSVP  AGLQR GKSCRLRWINYLRP LKRG
Sbjct:     9 KQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query:    74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
              F+ +EE  I+ LH +LGN+WSQIA  LPGRTDNEIKN W+S
Sbjct:    69 AFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNS 110

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2174195 MYB43 "myb domain protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 60/99 (60%), Positives = 80/99 (80%)

Query:    18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
             +KG W+ EED++L N++L +GH CW ++P  +GL R GKSCRLRWINYLRP LKRG+ + 
Sbjct:    13 KKGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINYLRPDLKRGLLSE 72

Query:    78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116
              EE+ ++ LH  LGN+WS+IA HLPGRTDNEIKN+W++H
Sbjct:    73 YEEQKVINLHAQLGNRWSKIASHLPGRTDNEIKNHWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 64/99 (64%), Positives = 80/99 (80%)

Query:    18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
             +KG W+ EEDQ+L +Y+ +HG+  W ++P NAGLQR GKSCRLRW NYLRP +KRG F+ 
Sbjct:    13 KKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSF 72

Query:    78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116
             +EEETI+ LH  LGNKWS IA  LPGRTDNEIKN+W++H
Sbjct:    73 EEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-52
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-38
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-06
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.003

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  178 bits (453), Expect = 1e-52
 Identities = 101/228 (44%), Positives = 125/228 (54%), Gaps = 15/228 (6%)

Query: 14  KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
           K K RKGLWSPEED++L  ++ ++GH CWSSVP  AGLQR GKSCRLRWINYLRP LKRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 74  VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANAT 133
            F+ QEE  I+ LH +LGN+WSQIA  LPGRTDNEIKN W+S LKKKL +       +  
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP 128

Query: 134 TPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAEWLS 193
               EN E      N P+   S        + SS  S +    +   S     L  +  S
Sbjct: 129 LSEVENGEDK----NPPTDDKSD-------KASSVVSNELNLLKADNSKPLAALQEKRSS 177

Query: 194 LDHANDGSFANSFEQVASKEGFNNNNNNNNNNNNNNNNNNQNSNLVQD 241
                        E  +S     NN+NNNN++N+N      N +   D
Sbjct: 178 SISPA----GYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLD 221

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  135 bits (341), Expect = 3e-38
 Identities = 68/129 (52%), Positives = 89/129 (68%), Gaps = 7/129 (5%)

Query: 1   MGCKSSEKPIAKP------KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRN 54
           M C   +KP++K       K   ++G W+ EED+ L +++ + G   W S+P  AGL R 
Sbjct: 2   MSC-GGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRC 60

Query: 55  GKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWH 114
           GKSCRLRW+NYLRP +KRG     EE+ IL LHRLLGN+WS IA  +PGRTDNEIKNYW+
Sbjct: 61  GKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 120

Query: 115 SHLKKKLAK 123
           +HL+KKL +
Sbjct: 121 THLRKKLLR 129

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 12  KPKPKHRK-GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGL 70
           K     RK G W   ED+ LK  V + G   WS V         GK    RW N+L P L
Sbjct: 12  KLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQL 70

Query: 71  KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAA 130
           K+  ++ +E+E ++ L + LG +WS IA +   RT  +    +       +  LE++ + 
Sbjct: 71  KKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY-------VNTLEDLSST 123

Query: 131 NATTPSSENMESSTSPNNNPSTRSSS 156
           + +     N      P N  S R   
Sbjct: 124 HDSKLQRRNEFDKIDPFNENSARRPD 149

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 62.5 bits (153), Expect = 4e-13
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66
          +G W+PEED+ L   V +HG+  WS +  +    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 61.4 bits (150), Expect = 8e-13
 Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 72  RGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSHL 117
           RG +  +E+E ++   +  GN  WS+IA+HLPGRTDN+ KN W+++L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 72  RGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKK 119
           +G +  +E+E ++ L +  G N W +IA+ LPGRT  + +  W + LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 78  QEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHL 117
           +E+E +L   +  G N W +IA+ LPGRT  + +  W + L
Sbjct: 5   EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          KG W+ EED+ L   V ++G   W  +       R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66
          W+ EED+ L   V ++G   W  +       R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEE 81
          W+ EED++L   V ++G   W    I   L R   +CR RW   LRP   RG +  +EE+
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQ--IAEELGRTPSACRDRWRRKLRPKRSRGPWT-KEED 56

Query: 82 TIL 84
            L
Sbjct: 57 QRL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 78  QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123
           +E+E +L L    GN W QIA+ L GRT +  ++ W   L+ K ++
Sbjct: 4   EEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDN 107
           P +K+  +  +E+E +L L +LL  +W  IA  + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.83
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.66
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.62
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PLN03212	249	Transcription repressor MYB5; Provisional	99.15
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
PLN03091	459	hypothetical protein; Provisional	99.13
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.13
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.1
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.02
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.99
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.94
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.82
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.31
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.95
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.92
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.6
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.43
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.42
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.23
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.07
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.97
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.87
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.78
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.68
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.63
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.46
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.43
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.31
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.05
PRK13923	170	putative spore coat protein regulator protein YlbO	95.95
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.71
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.14
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.06
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.81
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.8
PRK13923	170	putative spore coat protein regulator protein YlbO	94.37
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.69
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.69
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.76
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.75
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.35
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	88.92
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.48
KOG4167	907	consensus Predicted DNA-binding protein, contains	86.84
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	85.56
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	84.35
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.36

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=7.5e-34  Score=261.88  Aligned_cols=112  Identities=55%  Similarity=0.944  Sum_probs=107.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK   93 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~   93 (313)
                      ++.+.||+||+|||++|+++|++||+.+|..||+.+|++|++++||.||.+||+|.++++.||+|||++|+++|..+|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045400           94 WSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLE  125 (313)
Q Consensus        94 W~~Ia~~l~gRT~~q~knrw~~llkk~l~~~~  125 (313)
                      |+.||++|||||+++||++|+..+++++.+..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998887654

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=271.40  Aligned_cols=111  Identities=69%  Similarity=1.182  Sum_probs=106.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK   93 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~   93 (313)
                      |++++||+||+|||++|+++|.+||..+|..||..++++|+++|||+||.++|+|.+++++||+|||++|++++++||.+
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            47899999999999999999999999999999999877999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCHHHHHHHHHHHHHHHHHHH
Q 045400           94 WSQIAQHLPGRTDNEIKNYWHSHLKKKLAKL  124 (313)
Q Consensus        94 W~~Ia~~l~gRT~~q~knrw~~llkk~l~~~  124 (313)
                      |+.||++|+|||+++||+||+.+++++++..
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999887654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.1e-33  Score=256.11  Aligned_cols=111  Identities=57%  Similarity=1.054  Sum_probs=106.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN   92 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~   92 (313)
                      .|+.++|++||+|||++|+++|++||..+|..||..++++|+++|||+||.++|+|.+++++||+|||++|++++..||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            46889999999999999999999999999999999996699999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           93 KWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        93 ~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      +|+.||+.|||||+++||+||+.++++++.+
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r  129 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR  129 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence            9999999999999999999999999887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.3e-22  Score=194.62  Aligned_cols=162  Identities=23%  Similarity=0.412  Sum_probs=144.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchh
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWS   95 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~   95 (313)
                      -++.|.|+..||+.|+.+|.+||...|.+|+..+. .++++||+.||..+|+|.+++..|+.|||++||.+.+.+..+|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            36789999999999999999999999999999998 89999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCccccc
Q 045400           96 QIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSENMESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCA  175 (313)
Q Consensus        96 ~Ia~~l~gRT~~q~knrw~~llkk~l~~~~~~~~~~~~~~ss~~~~~s~sp~~~p~s~sss~~s~~~~e~ss~~~~~~~~  175 (313)
                      .|+..| |||++||..||..++.........  .....++.....+..+.|.+.|+.+++.++..++.+|.++++++.++
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~--~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarlaN  159 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYHYH--SEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLAN  159 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc--cccccccccCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHhc
Confidence            999999 999999999999998877765443  11222222456777888999999999999999999999999999999


Q ss_pred             ccCCcc
Q 045400          176 TQGQKS  181 (313)
Q Consensus       176 tq~~~s  181 (313)
                      +++++.
T Consensus       160 t~gkka  165 (617)
T KOG0050|consen  160 TQGKKA  165 (617)
T ss_pred             ccchHH
Confidence            987643

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=5.4e-19  Score=177.61  Aligned_cols=102  Identities=25%  Similarity=0.468  Sum_probs=95.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC-
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG-   91 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G-   91 (313)
                      ..|.+++|+||++||.+|..+|.+||.++|.+|-..+| +|+..|||+||.+.|....|++.||-.||+.||.+|++|| 
T Consensus       354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~  432 (939)
T KOG0049|consen  354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGK  432 (939)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHcc
Confidence            68999999999999999999999999999999999999 9999999999999999999999999999999999999999 


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHH
Q 045400           92 NKWSQIAQHLPGRTDNEIKNYWHS  115 (313)
Q Consensus        92 ~~W~~Ia~~l~gRT~~q~knrw~~  115 (313)
                      ++|.+||..||.||..|...|=..
T Consensus       433 g~WakcA~~Lp~~t~~q~~rrR~R  456 (939)
T KOG0049|consen  433 GNWAKCAMLLPKKTSRQLRRRRLR  456 (939)
T ss_pred             chHHHHHHHccccchhHHHHHHHH
Confidence            679999999999999666554433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=1.8e-18  Score=173.88  Aligned_cols=113  Identities=26%  Similarity=0.497  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch------------------------------
Q 045400           11 AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL------------------------------   60 (313)
Q Consensus        11 ~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~------------------------------   60 (313)
                      ....|+++|-.|++|||++|.++...++...|..||..++..|+..||.+                              
T Consensus       245 n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~  324 (939)
T KOG0049|consen  245 NELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITS  324 (939)
T ss_pred             hhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhh
Confidence            35789999999999999999999999999999999999996699999977                              


Q ss_pred             ------------------------hhhhccCCCccCcccCHHHHHHHHHHHHHhCCc-hhhhcccCCCCCHHHHHHHHHH
Q 045400           61 ------------------------RWINYLRPGLKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHS  115 (313)
Q Consensus        61 ------------------------Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~-W~~Ia~~l~gRT~~q~knrw~~  115 (313)
                                              ||...|+|.+++|+||.+||.+|+.+|.+||.+ |..|-..||||++.||+.||..
T Consensus       325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n  404 (939)
T KOG0049|consen  325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN  404 (939)
T ss_pred             ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence                                    899999999999999999999999999999965 9999999999999999999999


Q ss_pred             HHHHHHHH
Q 045400          116 HLKKKLAK  123 (313)
Q Consensus       116 llkk~l~~  123 (313)
                      .|....++
T Consensus       405 vL~~s~K~  412 (939)
T KOG0049|consen  405 VLNRSAKV  412 (939)
T ss_pred             HHHHhhcc
Confidence            88765443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.66  E-value=5.1e-17  Score=118.71  Aligned_cols=60  Identities=37%  Similarity=0.754  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHH
Q 045400           22 WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETI   83 (313)
Q Consensus        22 WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~L   83 (313)
                      ||+|||++|+.+|.+|| .+|..||..|| .|++.||+.||..+|.|.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 57999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.62  E-value=2.3e-16  Score=158.19  Aligned_cols=108  Identities=31%  Similarity=0.503  Sum_probs=102.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK   93 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~   93 (313)
                      ..+++.|.|+..||+.|..+|++||+.+|..||..+. -|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.+
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            4568889999999999999999999999999999999 699999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400           94 WSQIAQHLPGRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        94 W~~Ia~~l~gRT~~q~knrw~~llkk~l~  122 (313)
                      |+.||..+++||..+|.+||...+....+
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988876654

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.43  E-value=8.2e-14  Score=141.33  Aligned_cols=101  Identities=29%  Similarity=0.627  Sum_probs=91.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCc--cCcccCHHHHHHHHHHHH-------
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGL--KRGVFNMQEEETILTLHR-------   88 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l--kk~~WT~EED~~Ll~lv~-------   88 (313)
                      .+|+||+||++.|..+|.++| .+|..|+..|+  |.+..||+||+++..++-  +++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999 77999999887  999999999999999985  899999999999999995       


Q ss_pred             Hh-------------------CCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           89 LL-------------------GNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        89 ~~-------------------G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      ++                   +-.|+.|++.+.+|+..||+-+|..++.+..
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s  511 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS  511 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence            33                   1159999999999999999999999887653

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.42  E-value=3.1e-14  Score=99.84  Aligned_cols=48  Identities=33%  Similarity=0.630  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      |++||+|||++|+++|.+||..+|..||..||.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997779999999998999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=7.4e-13  Score=92.83  Aligned_cols=46  Identities=30%  Similarity=0.689  Sum_probs=41.8

Q ss_pred             CcccCHHHHHHHHHHHHHhCCc-hhhhcccCC-CCCHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL  117 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~-W~~Ia~~l~-gRT~~q~knrw~~ll  117 (313)
                      +++||+|||++|+++|.+||.. |..||..|+ +||+.||++||..++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999998 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.15  E-value=2.2e-11  Score=112.06  Aligned_cols=68  Identities=18%  Similarity=0.484  Sum_probs=58.1

Q ss_pred             cCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccC-CCCCHHHHHHHHHHHHHHHHHHH
Q 045400           49 AGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHL-PGRTDNEIKNYWHSHLKKKLAKL  124 (313)
Q Consensus        49 l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l-~gRT~~q~knrw~~llkk~l~~~  124 (313)
                      ++ +|+..-|-       ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.||+.||..+|++.+.+.
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg   79 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   79 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence            44 56665553       3678999999999999999999999 5799999998 69999999999999999877664

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=6e-11  Score=81.09  Aligned_cols=47  Identities=36%  Similarity=0.803  Sum_probs=44.1

Q ss_pred             CcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      +++||++||.+|+.++.+|| ..|..||..|++||+.+|+.||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 899999999999999999999998754

>PLN03091 hypothetical protein; Provisional

Probab=99.13  E-value=6.5e-12  Score=123.33  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=55.6

Q ss_pred             CCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400            4 KSSEKPIA-KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus         4 ~~~~k~~~-~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      +.|+.||. .++|.++||+||+|||++|++++++|| .+|.+||..|+ ||++.+|+.||...|+..
T Consensus        51 KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~LP-GRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         51 KSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             chHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            34555544 479999999999999999999999999 56999999999 999999999999877653

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.13  E-value=2.7e-11  Score=88.31  Aligned_cols=45  Identities=38%  Similarity=0.787  Sum_probs=39.1

Q ss_pred             cCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           75 FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        75 WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      ||+|||++|+.+|..||..|..||+.|+.||+.+|+.||...|++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999669999999999986653

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.10  E-value=3.7e-11  Score=82.14  Aligned_cols=48  Identities=35%  Similarity=0.705  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      ++.||++||++|+.++..||..+|..||..++ +||+.+|+.||..++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999778999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.02  E-value=4.4e-10  Score=75.64  Aligned_cols=43  Identities=33%  Similarity=0.712  Sum_probs=41.2

Q ss_pred             ccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      +||+|||..|+.++.++| ..|..||+.|++||+.+|+.||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.99  E-value=1.5e-10  Score=107.07  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhCC-chhhhcccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLP-GRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSENMESSTS  145 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~-gRT~~q~knrw~~llkk~l~~~~~~~~~~~~~~ss~~~~~s~s  145 (313)
                      |.+.+||||+|||++|+++|++||. .|..|++.++ +|+..+|+-||..+|++.++++...+.+..........-+   
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G---   81 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG---   81 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC---
Confidence            4455799999999999999999995 5999999998 9999999999999999988764433332222111111111   


Q ss_pred             CCCCCCCCCCccccccccccCCCCCcccccccCCcccCCchhhhh
Q 045400          146 PNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQKSCLPKLLFAE  190 (313)
Q Consensus       146 p~~~p~s~sss~~s~~~~e~ss~~~~~~~~tq~~~s~~pk~l~~~  190 (313)
                                  ..+..+....++++|+.+...+.+.+.|.+...
T Consensus        82 ------------NrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~  114 (238)
T KOG0048|consen   82 ------------NRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKM  114 (238)
T ss_pred             ------------cHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHc
Confidence                        114556666777788888777666666555544

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.94  E-value=3.6e-10  Score=76.10  Aligned_cols=45  Identities=36%  Similarity=0.649  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      +||+|||++|+.++.+||..+|..||..++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.82  E-value=4.7e-09  Score=107.11  Aligned_cols=102  Identities=27%  Similarity=0.360  Sum_probs=85.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHc----C-------------C------CCCcccccccCCcCCccccchhhhhccCCCc-cC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQH----G-------------H------PCWSSVPINAGLQRNGKSCRLRWINYLRPGL-KR   72 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~ky----g-------------~------~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l-kk   72 (313)
                      ++-+.|+.|||+.|...|..|    |             .      .-|..|...|| -|+...+..+-++...|.- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence            444899999999999999998    1             0      11567777788 6999888775445555544 99


Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+.+..
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            99999999999999999999999999999 999999999999998754

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.31  E-value=3.6e-07  Score=92.47  Aligned_cols=112  Identities=18%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             CCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHH
Q 045400            4 KSSEKPI-AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEET   82 (313)
Q Consensus         4 ~~~~k~~-~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~   82 (313)
                      ++|..+| ....|.++++.|+.|||+.|+.+...+|+. |..||..++ +|++.+|.+||.+.+.+..+ .+|+..+...
T Consensus        56 kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~  132 (512)
T COG5147          56 KQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQRRN  132 (512)
T ss_pred             ccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccchh
Confidence            3455555 457899999999999999999999999966 999999998 99999999999999998777 8888888888


Q ss_pred             HHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           83 ILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        83 Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      ....+..|+..|.++....--+-...|.+++..+..
T Consensus       133 ~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         133 EFDKIDPFNENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             hccccCchhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            887777787777776655555555556666655443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.95  E-value=1.6e-05  Score=57.99  Aligned_cols=48  Identities=17%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             cCcccCHHHHHHHHHHHHHhCC-ch---hhhcccC-CCC-CHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGN-KW---SQIAQHL-PGR-TDNEIKNYWHSHLK  118 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~-~W---~~Ia~~l-~gR-T~~q~knrw~~llk  118 (313)
                      .+-.||+||+.++++++..+|. .|   ..|++.| ..| |..||+.|++.+..
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            3567999999999999999996 89   9999987 345 99999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.92  E-value=7e-06  Score=59.92  Aligned_cols=49  Identities=14%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCC---cccccccCCcC-Cccccchhhhhcc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCW---SSVPINAGLQR-NGKSCRLRWINYL   66 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W---~~IA~~l~~~R-t~~QCr~Rw~~~L   66 (313)
                      ++-.||+||.++++++|..+|..+|   ..|+..|...| |..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3557999999999999999997799   99999887566 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.60  E-value=2.1e-05  Score=77.65  Aligned_cols=51  Identities=14%  Similarity=0.354  Sum_probs=46.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      .+-..-||.+|+-+|++++..||.++|..||.+|| .|+..+|+++|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            35567899999999999999999999999999999 9999999999998653

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.43  E-value=0.00011  Score=73.97  Aligned_cols=59  Identities=31%  Similarity=0.478  Sum_probs=53.2

Q ss_pred             ccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEME  128 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~~~~~~  128 (313)
                      ++.+-|+..||+.|-.+|.+|| ++|++|+..|+-.|+.||+.||..++.+.+.+..+..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~   64 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSR   64 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhh
Confidence            5678999999999999999999 5699999999999999999999999999888765543

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.42  E-value=0.00026  Score=63.95  Aligned_cols=99  Identities=23%  Similarity=0.391  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccc--cCCcCCccccchhhhhccC-CCc--------------------cCcccCH
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPIN--AGLQRNGKSCRLRWINYLR-PGL--------------------KRGVFNM   77 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~--l~~~Rt~~QCr~Rw~~~L~-p~l--------------------kk~~WT~   77 (313)
                      +|++++|-.|+.+|..-..  -..|+.-  +-..-|.+.+.+||+..|. |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~~--L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTND--LESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhcC--HHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            5999999999999987642  3333332  2223477888999999764 333                    3458999


Q ss_pred             HHHHHHHHHHHHhCC---chhhhcc----cC-CCCCHHHHHHHHHHHHHHHH
Q 045400           78 QEEETILTLHRLLGN---KWSQIAQ----HL-PGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        78 EED~~Ll~lv~~~G~---~W~~Ia~----~l-~gRT~~q~knrw~~llkk~l  121 (313)
                      +|++.|.........   .+.+|-.    .| ++||+.++..||..+.+..+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999997765543   3655543    23 88999999999996554444

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.23  E-value=0.00037  Score=69.01  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=44.5

Q ss_pred             ccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      +-...||.+|+.+||+++..|| +.|..||.++..||..+|+.||.+++-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            4456799999999999999999 889999999999999999999987654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.07  E-value=0.00086  Score=58.50  Aligned_cols=52  Identities=12%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             cCcccCHHHHHHHHHHHHHhCC----c---hhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGN----K---WSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~----~---W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      +...||.|||.+|.+.|..|-.    +   ...+++.| +||+.+|.-||++++|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            4568999999999999988742    2   88999999 999999999999999987655

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.97  E-value=0.00026  Score=70.53  Aligned_cols=46  Identities=24%  Similarity=0.443  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~   65 (313)
                      ..-.||.+|..+|.++|..|| .+|.+||.+++ +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            556899999999999999999 77999999999 99999999998764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.87  E-value=0.0005  Score=70.07  Aligned_cols=48  Identities=19%  Similarity=0.453  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~   65 (313)
                      ..-++.||.+|+-+|+++|.+|| .+|.+||.+++ +||..||..++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            34578899999999999999999 77999999999 99999999998763

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.78  E-value=0.0011  Score=66.28  Aligned_cols=44  Identities=18%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      ..||.+|..+|++++..||-.|.+||+++.+||..||.-||-.+
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            38999999999999999999999999999999999999999654

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.68  E-value=0.0019  Score=65.84  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=42.5

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      .+..||++|..+||+++..||-.|.+||.++.+||..||--|+..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3558999999999999999999999999999999999999999653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.63  E-value=0.0014  Score=50.85  Aligned_cols=49  Identities=27%  Similarity=0.486  Sum_probs=34.4

Q ss_pred             CcccCHHHHHHHHHHHHH------hC--C------chhhhcccC----CCCCHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRL------LG--N------KWSQIAQHL----PGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~------~G--~------~W~~Ia~~l----~gRT~~q~knrw~~llkk~  120 (313)
                      +..||.+|...||.++..      ++  .      -|..||..|    ..||+.||+.+|..+.+.-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      399999876    3699999999999965544

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.46  E-value=0.0037  Score=46.83  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=32.3

Q ss_pred             CcccCHHHHHHHHHHHHHhC--------Cc-hhhhcccCC-CCCHHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLG--------NK-WSQIAQHLP-GRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G--------~~-W~~Ia~~l~-gRT~~q~knrw~~llkk~l  121 (313)
                      +.+||.|||..|++.|+.+.        +. |.++++.-+ .+|-...++||.+.|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997642        22 999998876 8999999999988777654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.43  E-value=0.00092  Score=50.09  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcC--------CCCCcccccccCCcCCccccchhhhhccCCCc
Q 045400           19 KGLWSPEEDQRLKNYVLQHG--------HPCWSSVPINAGLQRNGKSCRLRWINYLRPGL   70 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg--------~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l   70 (313)
                      +.++|.|||+.|+..|..+.        ..=|..+++..+..+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46799999999999997763        22299999887767888899999999987643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.31  E-value=0.017  Score=63.78  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch-------hhhhc----------------------------
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL-------RWINY----------------------------   65 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~----------------------------   65 (313)
                      -|+.-+=..++.+..+||-.+-..||..|. ++|...++.       ||...                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488888888899999999888999999998 888877764       11110                            


Q ss_pred             ---------------cCCCccCcccCHHHHHHHHHHHHHhC-Cchhhhcc------------cCCCCCHHHHHHHHHHHH
Q 045400           66 ---------------LRPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQ------------HLPGRTDNEIKNYWHSHL  117 (313)
Q Consensus        66 ---------------L~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~------------~l~gRT~~q~knrw~~ll  117 (313)
                                     -.+..++..+|+|||.-|+-.+.+|| ..|..|-.            +|..||+..|..|-..++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                           01222344699999999999999999 67998833            346899999999999988


Q ss_pred             HHHHHH
Q 045400          118 KKKLAK  123 (313)
Q Consensus       118 kk~l~~  123 (313)
                      +-..+.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            765443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.05  E-value=0.0011  Score=57.88  Aligned_cols=50  Identities=34%  Similarity=0.687  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHc---CC---CCCcccccccCCcCCccccchhhhhccCC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQH---GH---PCWSSVPINAGLQRNGKSCRLRWINYLRP   68 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~ky---g~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p   68 (313)
                      .+...||.|||.+|.+.|.+|   |.   ..+..|+..+.  ||+..|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            456789999999999999999   21   13777887776  9999999999998873

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.95  E-value=0.0078  Score=53.19  Aligned_cols=52  Identities=12%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             ccCcccCHHHHHHHHHHHHHhCC----c---hhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLGN----K---WSQIAQHLPGRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G~----~---W~~Ia~~l~gRT~~q~knrw~~llkk~l~  122 (313)
                      .+...||.|||.+|.+.|..|+.    +   ...++..| +||+.+|..||+.+++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            35678999999999988888873    2   56777788 99999999999999997543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.71  E-value=0.0028  Score=49.10  Aligned_cols=47  Identities=23%  Similarity=0.523  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHHHHHHH--c----CC-------CCCccccccc---CCcCCccccchhhhhcc
Q 045400           20 GLWSPEEDQRLKNYVLQ--H----GH-------PCWSSVPINA---GLQRNGKSCRLRWINYL   66 (313)
Q Consensus        20 g~WT~EED~~L~~~V~k--y----g~-------~~W~~IA~~l---~~~Rt~~QCr~Rw~~~L   66 (313)
                      -.||.+|...|+.++..  +    +.       .-|..||..|   |..||+.||+.+|.+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            47999999999999988  2    10       1399999886   44799999999998743

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.14  E-value=0.038  Score=41.93  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=39.8

Q ss_pred             CcccCHHHHHHHHHHHHHhCC-----------------chhhhcccC-----CCCCHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGN-----------------KWSQIAQHL-----PGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~-----------------~W~~Ia~~l-----~gRT~~q~knrw~~llkk~  120 (313)
                      ...||.+|.+.|++++.++..                 -|..|+..|     +.||..+++.+|..+....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            457999999999999988631                 299999865     3699999999999866543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.06  E-value=0.0072  Score=58.04  Aligned_cols=47  Identities=15%  Similarity=0.324  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      --|+..|+-+|+++....|.++|..||..+| .|+...|+++|..++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            4599999999999999999999999999999 9999999999998776

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.81  E-value=0.024  Score=54.51  Aligned_cols=46  Identities=24%  Similarity=0.401  Sum_probs=42.4

Q ss_pred             cccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      ..|+..|+.+|++.+.-.| +.|..||.++..|+...||.||.++..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3699999999999999999 789999999999999999999977665

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.80  E-value=0.007  Score=46.00  Aligned_cols=49  Identities=27%  Similarity=0.402  Sum_probs=39.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHc-----C-----------CCCCccccccc----CCcCCccccchhhhhcc
Q 045400           18 RKGLWSPEEDQRLKNYVLQH-----G-----------HPCWSSVPINA----GLQRNGKSCRLRWINYL   66 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~ky-----g-----------~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L   66 (313)
                      ++..||++|.+.|+++|.+|     +           ...|..|+..+    |..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            35679999999999999998     2           12399999876    22699999999998754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.37  E-value=0.0096  Score=52.64  Aligned_cols=50  Identities=30%  Similarity=0.562  Sum_probs=38.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCC------CcccccccCCcCCccccchhhhhccC
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPC------WSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~------W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      ..++..||.|||.+|.+.|..|+...      ...++..+  +|++.+|..||.-+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            35678899999999999999996433      34444444  4999999999976665

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.69  E-value=0.14  Score=50.66  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             CCcccccccCCcCCccccchhhhhccCCCc-------------------------cCcccCHHHHHHHHHHHHHhCCchh
Q 045400           41 CWSSVPINAGLQRNGKSCRLRWINYLRPGL-------------------------KRGVFNMQEEETILTLHRLLGNKWS   95 (313)
Q Consensus        41 ~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l-------------------------kk~~WT~EED~~Ll~lv~~~G~~W~   95 (313)
                      .|..++-..+ -|...-...||...-++..                         .-..||+||-+.|.++++.|--+|.
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4777765566 6767667777877744321                         1125999999999999999999999


Q ss_pred             hhccc-----CCC-CCHHHHHHHHHHHHHHHH
Q 045400           96 QIAQH-----LPG-RTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        96 ~Ia~~-----l~g-RT~~q~knrw~~llkk~l  121 (313)
                      -|+..     ++. ||-.++|.||....++.+
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~  185 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLL  185 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence            99976     644 999999999999877543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.69  E-value=0.16  Score=42.37  Aligned_cols=51  Identities=24%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             CccCcccCHHHHHHHHHHHHHhCC----chhhhcc------------cCCCCCHHHHHHHHHHHHHH
Q 045400           69 GLKRGVFNMQEEETILTLHRLLGN----KWSQIAQ------------HLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        69 ~lkk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~------------~l~gRT~~q~knrw~~llkk  119 (313)
                      ..++..||+|||.-|+-.+.+||-    .|..|..            ++..||+..|..|-..+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556789999999999999999996    5887765            23569999999999988764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.76  E-value=0.2  Score=49.32  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      .+||.+|-+++.++..++|..+..|+..||.|...|||.+|..--+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            3899999999999999999999999999999999999999976444

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.75  E-value=0.53  Score=45.67  Aligned_cols=51  Identities=18%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             CcccCHHHHHHHHHHHHHh----------CCchhhhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLL----------GNKWSQIAQHL----PGRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~----------G~~W~~Ia~~l----~gRT~~q~knrw~~llkk~l~  122 (313)
                      ...|+.+|-..||++....          +..|..||+.+    .-||+.+|+.+|..+.++...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999888643          23499999854    359999999999997765543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.35  E-value=0.71  Score=35.93  Aligned_cols=46  Identities=28%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             ccCHHHHHHHHHHHHHh---CC----------chhhhcccC---CC--CCHHHHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLL---GN----------KWSQIAQHL---PG--RTDNEIKNYWHSHLKK  119 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~---G~----------~W~~Ia~~l---~g--RT~~q~knrw~~llkk  119 (313)
                      .||+++++.|++++.+.   |.          .|..|++.|   +|  .|..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998653   21          289999876   23  4788999999875443

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=88.92  E-value=0.18  Score=39.63  Aligned_cols=29  Identities=31%  Similarity=0.800  Sum_probs=17.7

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHcCCCCCcccc
Q 045400           15 PKHRKGLWSPEEDQRL--------KNYVLQHGHPCWSSVP   46 (313)
Q Consensus        15 p~~kkg~WT~EED~~L--------~~~V~kyg~~~W~~IA   46 (313)
                      |.-..|.||+|+|+.|        ..++++||   +..|+
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~   79 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE   79 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence            6677899999999999        56667887   55554

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.48  E-value=1.2  Score=44.96  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=44.0

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      -...||.||-.++-.+...||+.+.+|-+.||.|+-..+..+|....+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999999999998875553

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=86.84  E-value=0.3  Score=51.78  Aligned_cols=44  Identities=11%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhh
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWIN   64 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~   64 (313)
                      ..+||+.|-.++.+|+..|. +++..|+.+++ ++|.+||-+-|+.
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHHH
Confidence            35799999999999999999 78999999999 9999999997764

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=85.56  E-value=1.4  Score=30.72  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           77 MQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        77 ~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      ++++..++.++...|-.|.+||+.+ |.|...|+.+...-++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4678888889888999999999999 9999999998766443

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=84.35  E-value=0.67  Score=45.81  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhh
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWIN   64 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~   64 (313)
                      +..--+||.+|-+++.+|+...| .++..|+..+| .|..+|++..|.+
T Consensus       362 ~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP-~R~RkqIKaKfi~  408 (507)
T COG5118         362 KKGALRWSKKEIEKFYKALSIWG-TDFSLISSLFP-NRERKQIKAKFIK  408 (507)
T ss_pred             CCCCCcccHHHHHHHHHHHHHhc-chHHHHHHhcC-chhHHHHHHHHHH
Confidence            34445799999999999999999 56999999999 9999999998876

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.36  E-value=0.59  Score=45.37  Aligned_cols=47  Identities=28%  Similarity=0.449  Sum_probs=37.4

Q ss_pred             CCCCCHHHHHHHHHHHHHc---------CCCCCccccccc---CCcCCccccchhhhhc
Q 045400           19 KGLWSPEEDQRLKNYVLQH---------GHPCWSSVPINA---GLQRNGKSCRLRWINY   65 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~ky---------g~~~W~~IA~~l---~~~Rt~~QCr~Rw~~~   65 (313)
                      -..|+.+|-..|+.+..+.         ...-|..||..+   +..|++.||+.+|.+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl  112 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL  112 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            3789999999999998764         123499999843   4469999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-18
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		8e-18
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		9e-18
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-17
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-17
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-14
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		9e-12
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		3e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-04
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-04
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		4e-04

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 15  PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
           P+  KG W+ EEDQR+  +V ++G   WS +  +    R GK CR RW N+L P +K+  
Sbjct: 23  PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTS 81
Query: 75  FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           +  +E+  I   H+ LGN+W++IA+ LPGRTDN +KN+W+S
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 15  PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
           P+  KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P +K+  
Sbjct: 54  PELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTS 112
Query: 75  FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           +  +E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 15  PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
           P   KG W+ EEDQ++   V ++G   W+ +  +    R GK CR RW N+L P +K+  
Sbjct: 3   PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSS 61
Query: 75  FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           +  +E+  I   H++LGN+W++IA+ LPGRTDN +KN+W+S
Sbjct: 62  WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P +K+  +  +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P +K+  +  +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG ++  ED  ++ YV ++G   W  +  +    R+ K CR RW N+L P + +  +  +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRI-TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           E+ETI   +  LG+KWS IA+ +PGRTDN IKN W+S
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 18  RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
           +K  ++PEED+ LK  V QHG   W  +       RN + CR RW NYL P +    +  
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 78  QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113
           +E+  ++   +  G +W+ IA+  PGRTD  IKN W
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 23  SPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEET 82
           + EED +L+  V+++G   W  +     + RN + CR RW NY+ P L+   ++ +E+  
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 83  ILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113
           +   +   G KW++I++ L  R+DN I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 70  LKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           +K+  +  +E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 70  LKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
           +K+  +  +E+  +   H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          KG W+ EEDQRL   V ++G   WS +  +    R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-61
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-61
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-16
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-53
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-31
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	5e-53
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	8e-50
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-17
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-15
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-05
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	9e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	9e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	8e-04
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	4e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	7e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	4e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	6e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  190 bits (484), Expect = 2e-61
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 18  RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
            KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P +K+  +  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 78  QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
           +E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  190 bits (484), Expect = 4e-61
 Identities = 45/108 (41%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 14  KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
            P+  KG W+ EEDQR+  +V ++G   WS +  +    R GK CR RW N+L P +K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 74  VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
            +  +E+  I   H+ LGN+W++IA+ LPGRTDN +KN+W+S +++K+
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 53  RNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKN 111
           R    C+ RW   L P L +G +  +E++ ++   +  G K WS IA+HL GR   + + 
Sbjct: 8   RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67

Query: 112 YWHSHL 117
            WH+HL
Sbjct: 68  RWHNHL 73

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  189 bits (483), Expect = 5e-61
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           KG ++  ED  ++ YV ++G   W  +       R+ K CR RW N+L P + +  +  +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAANATTPSSE 138
           E+ETI   +  LG+KWS IA+ +PGRTDN IKN W+S + K+++     +       S +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 139 NMESS 143
              + 
Sbjct: 121 RKAAD 125

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  171 bits (435), Expect = 2e-53
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 14  KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
            P+  KG W+ EEDQR+   V ++G   WS +  +    R GK CR RW N+L P +K+ 
Sbjct: 53  NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKT 111

Query: 74  VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
            +  +E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S +++K+
Sbjct: 112 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  114 bits (287), Expect = 2e-31
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 18  RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
            K  W+ EED++LK  V Q+G   W  +       R    C+ RW   L P L +G +  
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTK 63

Query: 78  QEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSHL 117
           +E++ ++ L +  G K WS IA+HL GR   + +  WH+HL
Sbjct: 64  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  168 bits (429), Expect = 5e-53
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 12  KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLK 71
                 +K  ++PEED+ LK  V QHG   W  +       RN + CR RW NYL P + 
Sbjct: 4   VNLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSIS 61

Query: 72  RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEMEAAN 131
              +  +E+  ++   +  G +W+ IA+  PGRTD  IKN W +   K      +    +
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

Query: 132 A 132
            
Sbjct: 122 H 122

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  160 bits (406), Expect = 8e-50
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 19  KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
           K  ++ EED +L+  V+++G   W  +       RN + CR RW NY+ P L+   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 79  EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123
           E+  +   +   G KW++I++ L  R+DN I+N W    + +   
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 87.2 bits (217), Expect = 2e-22
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          KG W+ EEDQRL   V ++G   WS +  +    R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
             + G+W   ED+ LK  V+++G   WS +      +++ K C+ RW  +L P +K+  
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 75 FNMQEE 80
          ++    
Sbjct: 64 WSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
           K  W+ EED++LK  V Q+G   W  +       R    C+ RW   L P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLRP 68
                K  W+ EED++L+  V Q G   W    + +    R  + C+ RW+  L  
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKF--LASHFPNRTDQQCQYRWLRVLSG 56

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEEM 127
              K+  ++ +EEE +L L +L+  +W  IA  + GRT  +   ++   L K   +    
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 128 EAA 130
            + 
Sbjct: 64  SSG 66

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKR 72
             +K  WS EE+++L +         W +  I   + R    C   +   L    +R
Sbjct: 5  SSGKKTEWSREEEEKLLHLAKLMPTQ-WRT--IAPIIGRTAAQCLEHYEFLLDKAAQR 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLR 67
          ++  W  EED+ L++ V ++G   WS + ++     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 71  KRGVFNMQEEETILTLHRLLGN-KWSQIAQHLP--GRTDNEIKNYWHSHLKKK 120
           KR  +  +E++ + +  R  G   WS+I  H     RT   +K+ W +  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLRPGL 70
          +     ++  W  EED+ L++ V ++G   WS + ++     R     + RW    +  L
Sbjct: 3  EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLRPGL 70
          +K  W+ EE + +K  V ++G   W+++  N     R     + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 71  KRGVFNMQEEETILTLHRLLGN-KWSQIAQHLP--GRTDNEIKNYWHSHLKKKL 121
           K+  + ++E E +    +  G   W+ I+++ P   RT   IK+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLRPGL 70
                +K  W+ EE + +K  V ++G   W+++  N     R     + RW    R G+
Sbjct: 4  STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 71  KRGVFNMQEEETILTLHRLLGN-KWSQIAQHLP--GRTDNEIKNYWHSHLKKKL 121
           K+  + ++E E +    +  G   W+ I+++ P   RT   IK+ W +  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 8   KPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSV---PINAGLQRNGKSCRLRWIN 64
             +  P+ + R+  +S  E + L   V + G   W  V          R     + +W  
Sbjct: 3   HMLEDPQRRIRR-PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61

Query: 65  YLRPGL----KRGVFNMQEE--ETILTLHRLLGNKWSQIAQ 99
            +        +R    + +E    +L  H     +  Q  Q
Sbjct: 62  LVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 14/104 (13%)

Query: 6   SEKPIAKPKPKH-----RKGLWSPEEDQRLKNYVLQHGHPCWSSV---PINAGLQRNGKS 57
           +  P+++ K         +  ++  E + L   V   G   W  V          R    
Sbjct: 13  ANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVD 72

Query: 58  CRLRWINYLR-----PGLKRGVFNMQE-EETILTLHRLLGNKWS 95
            + +W   +      P  +RG    QE  + +L          S
Sbjct: 73  LKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRW 62
           ++  G ++PEE ++LK   ++HG   W++  I A L R+  S + R 
Sbjct: 19 DRNHVGKYTPEEIEKLKELRIKHG-NDWAT--IGAALGRSASSVKDRC 63

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 4   KSSEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSV---PINAGLQRNGKSCRL 60
           KS    +++ + +     +S  E + L   V   G   W  V     +    R     + 
Sbjct: 5   KSKRSELSQRRIRRP---FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKD 61

Query: 61  RWINYLR-----PGLKRGVFNMQE-EETILTLHRLLGNKWS 95
           +W   +      P  +RG    Q+  + +L  H     +  
Sbjct: 62  KWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 59  RLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK 118
                +  R  L    +  +E  T        G  WS IA+ +  +T ++ KN++ ++ K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-K 61

Query: 119 KKLAKLEEMEAANATTPSSENMESSTS 145
           K+    E ++          N      
Sbjct: 62  KRQNLDEILQQHKLKMEKERNARRKKK 88

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSV---PINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
          +S  E + L   V   G   W  V     +    R     + +W   +            
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 79 EEETILTLHRL--LGNKWSQ 96
          E      L R+      WSQ
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQ 82

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 68  PGLKRGVFNMQEEETILTLHRLLGNK------WSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
           P   +  F  +E+E IL + R    +      + +I+ ++P  T N I++ +  +L K+L
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 122 AK 123
             
Sbjct: 64  EY 65

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69
               W+ +E+  L   V+  G   W  V       +  + C   ++ Y    
Sbjct: 6  SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 58/221 (26%)

Query: 21  LW--SPEED-----QRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWIN--YLRPGLK 71
           +W    + D      +L  Y L               +++  K   +  I   YL   LK
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL---------------VEKQPKESTIS-IPSIYLE--LK 436

Query: 72  RGVFNMQEEETILTLHRLLGNKWSQIAQHLP-GRTDNEIKNYWHSHLKKKLAKLEEMEAA 130
             + N         LHR + + ++              +  Y++SH+   L  +E  E  
Sbjct: 437 VKLENEYA------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 131 NATTPSSEN-------MESSTSPNNNPSTRSSSYESLHHMEKSSAGSTDQCATQGQK--- 180
                   +       +   ++  N      S   +L  ++       D      +    
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNAS---GSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 181 ------SCLPKLLFAEW-----LSLDHANDGSFANSFEQVA 210
                      L+ +++     ++L   ++  F  + +QV 
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.85
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.8
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.75
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.73
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.69
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.69
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.62
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.62
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.62
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.59
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.51
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.51
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.47
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.46
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.45
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.16
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.44
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.42
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.41
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.36
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.34
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.32
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.99
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.28
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.26
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.26
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.23
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.21
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.19
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.18
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.13
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.1
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.94
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.93
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.93
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.8
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.79
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.77
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.74
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.68
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.56
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.48
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.45
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.44
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.33
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.31
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.23
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.18
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.1
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.07
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.05
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.24
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.87
2crg_A	70	Metastasis associated protein MTA3; transcription	97.72
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.66
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.65
2crg_A	70	Metastasis associated protein MTA3; transcription	97.56
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.52
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.51
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.39
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.37
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.98
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.81
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.77
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.12
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.89
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.45
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.88
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	90.87
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.57
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.34

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=4.6e-34  Score=230.46  Aligned_cols=105  Identities=43%  Similarity=0.795  Sum_probs=99.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchh
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWS   95 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~   95 (313)
                      .+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            36899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           96 QIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        96 ~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      .||++|||||+.+|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999988753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=4.2e-34  Score=238.68  Aligned_cols=117  Identities=38%  Similarity=0.724  Sum_probs=103.1

Q ss_pred             CCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHH
Q 045400            4 KSSEKPIA-KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEET   82 (313)
Q Consensus         4 ~~~~k~~~-~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~   82 (313)
                      ++|..++. ..+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++
T Consensus        11 ~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~   89 (128)
T 1h8a_C           11 VQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRI   89 (128)
T ss_dssp             -----------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHH
Confidence            34555544 478999999999999999999999999888999999999 9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           83 ILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        83 Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      |++++.+||.+|+.||++|||||+.+|++||+.++++++
T Consensus        90 L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           90 IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1e-33  Score=229.70  Aligned_cols=102  Identities=29%  Similarity=0.564  Sum_probs=98.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhc
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIA   98 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia   98 (313)
                      ||+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHH
Q 045400           99 QHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        99 ~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      ++|||||+.+|++||..++++..
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHH
Confidence            99999999999999999888754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=4.9e-33  Score=231.94  Aligned_cols=105  Identities=35%  Similarity=0.655  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN   92 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~   92 (313)
                      .++..+||+||+|||++|+++|.+||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            367899999999999999999999996 8999999999 99999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           93 KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        93 ~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +|+.||+.|||||+.+|++||..++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999988775

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=5.3e-33  Score=233.09  Aligned_cols=104  Identities=38%  Similarity=0.728  Sum_probs=100.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhc
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIA   98 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia   98 (313)
                      ||+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999989999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           99 QHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        99 ~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      ++|||||+.+|++||+.++++.+..
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999887643

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.1e-31  Score=231.54  Aligned_cols=109  Identities=42%  Similarity=0.779  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG   91 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G   91 (313)
                      ...|.+++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus        51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            468999999999999999999999999888999999998 9999999999999999999999999999999999999999


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           92 NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        92 ~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      .+|+.||++|||||+++|++||+.++++++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999988753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.3e-29  Score=218.63  Aligned_cols=104  Identities=33%  Similarity=0.682  Sum_probs=61.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC-ch
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN-KW   94 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W   94 (313)
                      .+++|+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||. .|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            46789999999999999999999889999999999 99999999999999999999999999999999999999996 69


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           95 SQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        95 ~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                      ..||+.|||||+.||++||..+|.+.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            99999999999999999999987643

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.1e-22  Score=152.71  Aligned_cols=66  Identities=26%  Similarity=0.600  Sum_probs=64.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHH
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEE   80 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED   80 (313)
                      .|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5789999999999999999999999889999999999 99999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.80  E-value=2.1e-20  Score=155.63  Aligned_cols=74  Identities=30%  Similarity=0.693  Sum_probs=50.7

Q ss_pred             cccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           45 VPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        45 IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      ||+.|+ +||++||++||.++|+|.+++++||+|||++|+++|.+||. .|..||..|||||+.||++||..+|.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   75 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP   75 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence            788888 99999999999999999999999999999999999999995 699999999999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.75  E-value=8.1e-19  Score=159.12  Aligned_cols=106  Identities=21%  Similarity=0.332  Sum_probs=92.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCC-----CcccccccCCcCCccccchhhhhccCCCcc-----------------
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPC-----WSSVPINAGLQRNGKSCRLRWINYLRPGLK-----------------   71 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~-----W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk-----------------   71 (313)
                      .+.+.|++||+|||++|+++|.+||..+     |..||..|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3578899999999999999999998643     999999999 99999999999999999986                 


Q ss_pred             ------------CcccCHHHHHHHHHHHHH-h------------------------------------------------
Q 045400           72 ------------RGVFNMQEEETILTLHRL-L------------------------------------------------   90 (313)
Q Consensus        72 ------------k~~WT~EED~~Ll~lv~~-~------------------------------------------------   90 (313)
                                  +..||.|||-.|+..+++ +                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999987 2                                                


Q ss_pred             -----CC----chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           91 -----GN----KWSQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        91 -----G~----~W~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                           |.    .|..||+.+|+||...+|+||+.+++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999988765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.73  E-value=1.2e-18  Score=143.77  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccc----CCcCCccccchhhhhccC-----CCccCc-ccCHHHH
Q 045400           11 AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINA----GLQRNGKSCRLRWINYLR-----PGLKRG-VFNMQEE   80 (313)
Q Consensus        11 ~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L~-----p~lkk~-~WT~EED   80 (313)
                      ....+++++++||+|||+.|+++|.+||.+.|..|+..+    + +||+.||++||+++|+     |.++++ +|++||+
T Consensus         9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~   87 (121)
T 2juh_A            9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLL   87 (121)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHH
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHH
Confidence            346789999999999999999999999988999999985    5 9999999999999998     999999 9999999


Q ss_pred             HHHHHHHHHhCCchhh
Q 045400           81 ETILTLHRLLGNKWSQ   96 (313)
Q Consensus        81 ~~Ll~lv~~~G~~W~~   96 (313)
                      .+|+.++..+|++|+.
T Consensus        88 ~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           88 DRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHccchhc
Confidence            9999999999999976

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=3.5e-18  Score=124.39  Aligned_cols=57  Identities=26%  Similarity=0.520  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCcc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLK   71 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk   71 (313)
                      .|.+++++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999878999999999 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=6.4e-18  Score=119.56  Aligned_cols=52  Identities=44%  Similarity=0.727  Sum_probs=49.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      +++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999878999999998 999999999999999984

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.69  E-value=7.7e-18  Score=127.62  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             chhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHH
Q 045400           59 RLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHL  117 (313)
Q Consensus        59 r~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~ll  117 (313)
                      --||.++|+|.+++++||+|||++|+++|.+||.+|+.||+.| |||+.+||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999 999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.69  E-value=6.9e-18  Score=126.24  Aligned_cols=65  Identities=20%  Similarity=0.329  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCC-cCCccccchhhhhccCCCccCcccC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGL-QRNGKSCRLRWINYLRPGLKRGVFN   76 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~p~lkk~~WT   76 (313)
                      ++++..++++||+|||++|+++|.+||..+|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999998899999999976 8999999999999999999988764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.69  E-value=1.9e-17  Score=136.94  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=74.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccc----CCcCCccccchhhhhcc-----CCCccCcccCHHH-HHH
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINA----GLQRNGKSCRLRWINYL-----RPGLKRGVFNMQE-EET   82 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L-----~p~lkk~~WT~EE-D~~   82 (313)
                      ...+.++++||+|||+.|+++|.+||.+.|..|+..+    + +||+.||++||++++     +|.++++.|+++| +++
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            4677899999999999999999999988999999864    5 999999999999999     8999999999999 899


Q ss_pred             HHHHHHHhCCc
Q 045400           83 ILTLHRLLGNK   93 (313)
Q Consensus        83 Ll~lv~~~G~~   93 (313)
                      |+.++..+|++
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999964

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.67  E-value=1.1e-17  Score=118.18  Aligned_cols=52  Identities=33%  Similarity=0.617  Sum_probs=48.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      +++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999879999999999 999999999999999984

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=118.69  Aligned_cols=58  Identities=26%  Similarity=0.395  Sum_probs=55.4

Q ss_pred             ccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           65 YLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        65 ~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      +|+|.+++++||+|||++|+++|+.+|.+|..||+ |+|||+.||++||..+|++.+.+
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            69999999999999999999999999999999999 88999999999999999988764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.62  E-value=1.1e-16  Score=120.62  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=54.5

Q ss_pred             cCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           66 LRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        66 L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|+|||+.||++||+.++++.+..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999886543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.62  E-value=7.8e-17  Score=119.13  Aligned_cols=57  Identities=25%  Similarity=0.436  Sum_probs=49.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccC-CcCCccccchhhhhccCCCcc
Q 045400           15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG-LQRNGKSCRLRWINYLRPGLK   71 (313)
Q Consensus        15 p~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~-~~Rt~~QCr~Rw~~~L~p~lk   71 (313)
                      ...+|++||+|||++|+++|.+||..+|..||..++ .+||+.||++||.++++|.+.
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            446789999999999999999999889999998764 389999999999999998763

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.62  E-value=1.2e-16  Score=116.39  Aligned_cols=55  Identities=16%  Similarity=0.411  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      .+.+.+++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            3678999999999999999999999889999999999 999999999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-16  Score=118.23  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcc
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV   74 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~   74 (313)
                      .+.|.+++++||+|||++|+++|.+||. +|..||. ++ |||+.||++||.++|+|.+++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            3579999999999999999999999996 8999999 77 89999999999999999776653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=9.5e-16  Score=111.41  Aligned_cols=55  Identities=25%  Similarity=0.477  Sum_probs=51.3

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      .|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.||++||..+|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 599999999999999999999999987643

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=1.4e-15  Score=107.34  Aligned_cols=50  Identities=30%  Similarity=0.543  Sum_probs=46.1

Q ss_pred             ccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 899999999999999999999998864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=2.5e-15  Score=106.13  Aligned_cols=50  Identities=34%  Similarity=0.764  Sum_probs=46.9

Q ss_pred             ccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999996 699999999999999999999998864

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.6e-16  Score=117.98  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-----CCCcccccccCCcCCccccchhhhhccCCCccCcc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGH-----PCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV   74 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~-----~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~   74 (313)
                      +|.+.+++||+|||++|+++|.+||.     .+|..||..|+ +||+.||+.||.++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999996     67999999999 99999999999999998777654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=8.9e-16  Score=108.98  Aligned_cols=50  Identities=24%  Similarity=0.464  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccCC-cCCccccchhhhhccC
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGL-QRNGKSCRLRWINYLR   67 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~   67 (313)
                      ++|+||+|||++|+++|.+||..+|..||..++. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999876 6999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.54  E-value=1.4e-15  Score=110.16  Aligned_cols=51  Identities=18%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      .+.+++||+|||++|+++|.+||..+|..||..||.+||+.||++||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456889999999999999999998899999999987899999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=7.7e-15  Score=104.11  Aligned_cols=49  Identities=29%  Similarity=0.485  Sum_probs=46.2

Q ss_pred             cCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk  119 (313)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            578999999999999999999 68999999999  99999999999998864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=7.4e-15  Score=106.90  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      .|.+.+++||+|||++|+++|.+|| .+|..||++|+|||+.||++||..+|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            4678999999999999999999999 799999999999999999999998875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=4.1e-15  Score=111.36  Aligned_cols=57  Identities=28%  Similarity=0.450  Sum_probs=52.6

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      .|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.||++||..+|++.+.+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            5788999999999999999999999 78999999999999999999999998876543

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.51  E-value=7.7e-15  Score=109.60  Aligned_cols=57  Identities=28%  Similarity=0.431  Sum_probs=52.5

Q ss_pred             cCCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHHHHH
Q 045400           66 LRPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        66 L~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk~l~  122 (313)
                      ..|..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||..+|++.+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~   63 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI   63 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence            45678899999999999999999999 68999999999  99999999999999987654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.51  E-value=1.6e-15  Score=114.28  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccC
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKR   72 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk   72 (313)
                      ..|.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||..+|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            368899999999999999999999995 8999999999 999999999999999876665

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=2.4e-14  Score=105.75  Aligned_cols=51  Identities=24%  Similarity=0.453  Sum_probs=46.1

Q ss_pred             ccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk~  120 (313)
                      .++++||+|||++|+++|.+|| .+|..||+.++  |||+.||++||+.++++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4789999999999999999999 58999999865  999999999999988754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-14  Score=110.26  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhC------CchhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLG------NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G------~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~  122 (313)
                      +|.+.+++||+|||++|+++|.+||      .+|..||++|+|||+.||++||+.+|.+.++
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      6899999999999999999999998876543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=4.7e-14  Score=102.04  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=46.3

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC-CCCHHHHHHHHHHHH
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP-GRTDNEIKNYWHSHL  117 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~-gRT~~q~knrw~~ll  117 (313)
                      ..+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.||+.||..++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999 88999999999 999999999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.46  E-value=3.5e-14  Score=114.51  Aligned_cols=80  Identities=21%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccC---CcCCccccchhhhhcc-----CCCccCcccCHHHHHH-
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG---LQRNGKSCRLRWINYL-----RPGLKRGVFNMQEEET-   82 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~---~~Rt~~QCr~Rw~~~L-----~p~lkk~~WT~EED~~-   82 (313)
                      ..++++++++||+|||+.|+++|.+||.+.|..|+..++   .+||+.+|++||++++     +|.++++.-+++|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            457889999999999999999999999889999998762   3999999999999999     6999999888777665 


Q ss_pred             HHHHHHHhC
Q 045400           83 ILTLHRLLG   91 (313)
Q Consensus        83 Ll~lv~~~G   91 (313)
                      +++++..+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=108.89  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400            6 SEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY   65 (313)
Q Consensus         6 ~~k~~~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~   65 (313)
                      ..++....++...+++||+|||++|+++|.+|| .+|..||.+|+ +||+.||+.||.++
T Consensus         5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A            5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            344444567788899999999999999999999 88999999999 99999999999997

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.16  E-value=9e-15  Score=114.71  Aligned_cols=56  Identities=23%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             ccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           65 YLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        65 ~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                      .++|.+.+++||+|||++|+++|.+||.+|..||++|+|||+.||++||..++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56789999999999999999999999999999999999999999999999988864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.44  E-value=8.8e-15  Score=122.14  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG   91 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G   91 (313)
                      ...|.+++|+||+|||++|+++|.+|| ..|..||..|+ |||+.||+.||..+|++.+..++|+.+--    .......
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk  120 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKK  120 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC--
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhh
Confidence            467999999999999999999999999 56999999999 99999999999999999999999887631    1111223


Q ss_pred             CchhhhcccC
Q 045400           92 NKWSQIAQHL  101 (313)
Q Consensus        92 ~~W~~Ia~~l  101 (313)
                      .+|+.|++.|
T Consensus       121 ~~~~~i~k~~  130 (131)
T 3zqc_A          121 RKAADVPKKL  130 (131)
T ss_dssp             ----------
T ss_pred             hhhhhcchhc
Confidence            4577777655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.42  E-value=9e-14  Score=107.73  Aligned_cols=69  Identities=22%  Similarity=0.332  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCcccccc----cCCcCCccccchhhhhcc-----CCCccCc-ccCHHHHHHHHHHHHH
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPIN----AGLQRNGKSCRLRWINYL-----RPGLKRG-VFNMQEEETILTLHRL   89 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~----l~~~Rt~~QCr~Rw~~~L-----~p~lkk~-~WT~EED~~Ll~lv~~   89 (313)
                      ++||+|||+.|+++|.+||.++|..|+..    ++ +||+.||++||.+++     .|.++++ +..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999998899999985    66 999999999999988     6776665 6777887889988765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.41  E-value=5.2e-14  Score=106.55  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCc
Q 045400           11 AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGL   70 (313)
Q Consensus        11 ~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l   70 (313)
                      ....|.+++|+||+|||++|+++|.+||.. |..||..|  |||+.||+.||.. |....
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHc
Confidence            357899999999999999999999999955 99999998  7999999999985 44443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=1.4e-13  Score=104.24  Aligned_cols=55  Identities=15%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhccC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      +.++...+++||+|||++|++||.+||   +.+|..||..|| |||+.||+.||..++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            357888999999999999999999999   357999999999 9999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.34  E-value=7.7e-13  Score=100.09  Aligned_cols=51  Identities=8%  Similarity=0.219  Sum_probs=46.9

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      +...+++||.|||++|+.++.+||    .+|..||++|||||+.||++||..++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    579999999999999999999998754

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.32  E-value=1.7e-13  Score=109.78  Aligned_cols=56  Identities=20%  Similarity=0.390  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      ...|.+++|+||+|||++|+++|.+|| ..|..||..|| |||+.||+.||..+|...
T Consensus        49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP-GRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred             ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence            367999999999999999999999999 57999999999 999999999999988753

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.99  E-value=1.6e-13  Score=107.56  Aligned_cols=55  Identities=24%  Similarity=0.442  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCC
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP   68 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p   68 (313)
                      ...|.+.+|+||+|||++|+++|.+||. +|..||..|+ |||+.||+.||..+|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            4578999999999999999999999995 7999999999 99999999999998863

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=100.05  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=44.9

Q ss_pred             CccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045400           69 GLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        69 ~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      ...+++||+|||++|+++|.+||.+|..||++|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999764

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.26  E-value=5.2e-12  Score=92.13  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=45.8

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhc---ccCCCCCHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIA---QHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia---~~l~gRT~~q~knrw~~llkk  119 (313)
                      .+.+||+|||+.|+++|++||.+|..|+   +++++||..++|+||+.+.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   678999999999999997764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.26  E-value=4e-12  Score=105.32  Aligned_cols=55  Identities=22%  Similarity=0.452  Sum_probs=50.5

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      .+..++++||+|||++|+++|.+||.+|..||+.|+|||+.||+.||..+|.+.+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~   60 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI   60 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence            4578999999999999999999999999999999999999999999999886543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.23  E-value=1.1e-12  Score=105.70  Aligned_cols=54  Identities=30%  Similarity=0.511  Sum_probs=50.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCC
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP   68 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p   68 (313)
                      ..|.+++|+||+|||++|+.+|.+||. .|..||..|| |||+.||+.||..++..
T Consensus        47 L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           47 INPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             SSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred             HcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence            679999999999999999999999995 7999999998 99999999999987764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.21  E-value=1.3e-11  Score=95.46  Aligned_cols=48  Identities=21%  Similarity=0.469  Sum_probs=44.4

Q ss_pred             cccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk~  120 (313)
                      .+||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 89999995    89999999999999988754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.19  E-value=2.1e-11  Score=98.23  Aligned_cols=52  Identities=21%  Similarity=0.414  Sum_probs=47.5

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhCC-chhhhcccC----CCCCHHHHHHHHHHHHHH
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQHL----PGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l----~gRT~~q~knrw~~llkk  119 (313)
                      +..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+.+++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4568899999999999999999996 899999965    899999999999998874

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.18  E-value=1.9e-11  Score=100.84  Aligned_cols=54  Identities=22%  Similarity=0.438  Sum_probs=49.5

Q ss_pred             cCCCccCcccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHH
Q 045400           66 LRPGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        66 L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk  119 (313)
                      +.+..++++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            456778999999999999999999996 89999997    4999999999999998875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.16  E-value=9.8e-12  Score=112.81  Aligned_cols=55  Identities=27%  Similarity=0.489  Sum_probs=48.2

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhCCc------hhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLGNK------WSQIAQHLPGRTDNEIKNYWHSHLKKKLA  122 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G~~------W~~Ia~~l~gRT~~q~knrw~~llkk~l~  122 (313)
                      +.+.+++||+|||++|+++|.++|.+      |..||++|||||+++||+||+.+|++.+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            45788999999999999999999875      99999999999999999999999988654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.13  E-value=5.5e-11  Score=93.91  Aligned_cols=50  Identities=16%  Similarity=0.383  Sum_probs=45.2

Q ss_pred             cCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                      .+++||.|||++|++++.+||    .+|..||+.|||||+.+|++||..++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    57999999999999999999999977653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.10  E-value=1.4e-11  Score=97.27  Aligned_cols=48  Identities=13%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhcc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      .++.||+|||++|++++.+||   +.+|..||..|| |||+.||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            367899999999999999997   467999999999 999999999999864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.08  E-value=1e-10  Score=96.61  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=47.5

Q ss_pred             CCccCcccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHHH
Q 045400           68 PGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        68 p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk~  120 (313)
                      ...++++||.|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+.+++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457899999999999999999996 89999986    48999999999999988753

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=7.1e-10  Score=80.75  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=43.6

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHL  117 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~ll  117 (313)
                      ...+||+||++++++++.+||.+|..||.+||+||..+|..+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            46799999999999999999999999999999999999999997643

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=3.2e-10  Score=82.59  Aligned_cols=52  Identities=13%  Similarity=0.284  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      +.+...++||+||+++|++++.+|| .+|..||..|| +||..||+++|....+
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHTC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhcC
Confidence            3446778999999999999999999 78999999999 9999999999976543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=86.05  Aligned_cols=64  Identities=14%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             cccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccC-----CCCCHHHHHHHHHHHHHHHHHH
Q 045400           56 KSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHL-----PGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        56 ~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l-----~gRT~~q~knrw~~llkk~l~~  123 (313)
                      .=+.++|.++|.|    .+||.||+..|++|+++|+.+|..|+..+     ++||..++|+||..+.++.+..
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4568899999976    89999999999999999999999999998     5899999999999988876544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.80  E-value=1.8e-09  Score=78.77  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCcccc---cccCCcCCccccchhhhhccC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVP---INAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA---~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      ..+.+||+|||+.|+++|++||. .|..|+   ..++ +||...+++||++...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            36788999999999999999996 899999   4555 9999999999998664

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.79  E-value=2.6e-09  Score=106.00  Aligned_cols=47  Identities=13%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      .+||+||.+++++++.+||+.|..||+.+++||..||+++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999875553

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.77  E-value=5.8e-09  Score=78.51  Aligned_cols=49  Identities=12%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             CccCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           69 GLKRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        69 ~lkk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      ..+.++||.|||++|.+++.+|+    .+|..||.+| |||..+|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45678999999999999999997    5699999998 9999999999988644

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.74  E-value=8.3e-09  Score=92.93  Aligned_cols=49  Identities=12%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      ...+||+||++++++++.+||+.|..||+.|++||..||+++|..+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999999999999999988775

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.68  E-value=4e-09  Score=79.44  Aligned_cols=51  Identities=10%  Similarity=0.156  Sum_probs=43.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhccC
Q 045400           15 PKHRKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        15 p~~kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      .....+.||.|||++|.+|+.+|+   +.+|..||+.+  |||+.||+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            345578899999999999999997   46799999986  5999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.56  E-value=1.6e-08  Score=76.28  Aligned_cols=49  Identities=22%  Similarity=0.434  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC---CCCcccccccCCcCCccccchhhhhccCC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGH---PCWSSVPINAGLQRNGKSCRLRWINYLRP   68 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p   68 (313)
                      ...||.||+++|..++..|+.   .+|..||..|| +||..+|+.||...+.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            357999999999999999974   56999999999 99999999999987653

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=1.1e-07  Score=71.59  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             cCcccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWHSHL  117 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~~ll  117 (313)
                      ...+||.||+++|..++..|+.    +|..||..|+|||..+|+.||..++
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3468999999999999999984    5999999999999999999998763

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.45  E-value=5.3e-08  Score=87.73  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      ....++||+||++++++++.+|| ++|..||..|+ +||..||+.+|..+.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            35678999999999999999999 78999999999 9999999999987664

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.44  E-value=4.2e-08  Score=71.04  Aligned_cols=48  Identities=21%  Similarity=0.414  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHc--------CCCCCccccc-ccCCcCCccccchhhhhccC
Q 045400           19 KGLWSPEEDQRLKNYVLQH--------GHPCWSSVPI-NAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~ky--------g~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      |.+||+|||+.|++.|.+|        |..-|..+|+ .++ ++|-.+||+||..+|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        5556999999 788 9999999999999875

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.33  E-value=1.2e-07  Score=71.12  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CCCcccccccCCcCCccccchhhh
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGH---PCWSSVPINAGLQRNGKSCRLRWI   63 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~Rt~~QCr~Rw~   63 (313)
                      ..+.||.||+++|..|+++|+.   .+|.+||+.|| |||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            3567999999999999999963   47999999999 999999999986

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.31  E-value=4.8e-07  Score=65.40  Aligned_cols=47  Identities=26%  Similarity=0.457  Sum_probs=42.2

Q ss_pred             CcccCHHHHHHHHHHHHHh--------CCc-hhhhcc-cCCCCCHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLL--------GNK-WSQIAQ-HLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~--------G~~-W~~Ia~-~l~gRT~~q~knrw~~llk  118 (313)
                      +.+||+|||..|++.|.++        |+. |..+++ .+|++|-.++++||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5789999999999999999        544 999999 7999999999999987653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=1.7e-06  Score=63.19  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQ-HLPGRTDNEIKNYWHS  115 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRT~~q~knrw~~  115 (313)
                      .|.++..+||+||.++..+++.+||..|..|++ .|++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            467888999999999999999999999999999 5899999999998864

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.18  E-value=5.7e-06  Score=77.92  Aligned_cols=103  Identities=10%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch-------hhhhc---------------------------
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL-------RWINY---------------------------   65 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~---------------------------   65 (313)
                      +.||..|...++.++.+||-.+|..||..|+ ++|...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 899877654       12100                           


Q ss_pred             ----------------cCCCccCcccCHHHHHHHHHHHHHhCC----chhhhc---c---------cCCCCCHHHHHHHH
Q 045400           66 ----------------LRPGLKRGVFNMQEEETILTLHRLLGN----KWSQIA---Q---------HLPGRTDNEIKNYW  113 (313)
Q Consensus        66 ----------------L~p~lkk~~WT~EED~~Ll~lv~~~G~----~W~~Ia---~---------~l~gRT~~q~knrw  113 (313)
                                      ..+..+...||+|||..||-++.+||-    .|..|.   +         ++..||+.+|..|-
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                            012224458999999999999999996    499996   2         45789999999999


Q ss_pred             HHHHHHHHHH
Q 045400          114 HSHLKKKLAK  123 (313)
Q Consensus       114 ~~llkk~l~~  123 (313)
                      ..|++-..+.
T Consensus       270 ~tLi~~iekE  279 (304)
T 1ofc_X          270 NTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998754443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=1.4e-06  Score=63.63  Aligned_cols=50  Identities=10%  Similarity=0.104  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccc-ccCCcCCccccchhhhhc
Q 045400           14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPI-NAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~   65 (313)
                      .|.+....||+||-+++.+++.+|| ++|..|+. .|+ +|+..||.+-|..+
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence            5788889999999999999999999 68999998 588 99999999887654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.07  E-value=8.6e-07  Score=66.52  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=38.8

Q ss_pred             CcccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWH  114 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~  114 (313)
                      .++||.||+++|..++.+|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    6999999999999999999985

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.05  E-value=3.7e-06  Score=65.38  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=43.8

Q ss_pred             cccCHHHHHHHHHHHHHhCC---chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGN---KWSQIAQHLPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRT~~q~knrw~~llkk~  120 (313)
                      -.||+|||+.||..+++-|.   .|..||+.|.+|+++||++||+.|++-.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            37999999999999999985   6999999998999999999999987743

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.24  E-value=8.7e-07  Score=65.36  Aligned_cols=45  Identities=16%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             ccCHHHHHHHHHHHHHhCC---chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLLGN---KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      -||.|||..||..+++-|.   .|..||+.| +||++||++||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999996   699999999 99999999999998763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.87  E-value=2.5e-05  Score=61.28  Aligned_cols=60  Identities=15%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             hhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCC-----CCCHHHHHHHHHHHHHHHHHH
Q 045400           60 LRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLP-----GRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        60 ~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~-----gRT~~q~knrw~~llkk~l~~  123 (313)
                      +.|..+|.    ...||.||...|++|+++|.-+|..|+..+.     .||..++|.||..+.++.++.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34666664    3689999999999999999999999998763     799999999999988876543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.72  E-value=4.7e-05  Score=56.65  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWSQIAQ-HLPGRTDNEIKNYWHS  115 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRT~~q~knrw~~  115 (313)
                      ...+||+||..++.+++.+||..|..|++ .|++||..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            35689999999999999999999999999 5899999999999864

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.66  E-value=4.2e-05  Score=60.16  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=41.5

Q ss_pred             CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS  115 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~  115 (313)
                      ...||+||.+++.++...||+.|..|+..||+||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999864

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.65  E-value=1.5e-05  Score=79.18  Aligned_cols=48  Identities=15%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      ....+||.||-+++++++.+|| ++|..||..|+ +||..||+..|.++.
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4578999999999999999999 78999999999 999999999887643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.56  E-value=3.6e-05  Score=57.31  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCccccc-ccCCcCCccccchhhhhc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPI-NAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~   65 (313)
                      ....||+||-+++.+++.+|| ++|..|+. .|+ +|+..+|.+-|..+
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   53 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence            345799999999999999999 68999999 588 99999999987643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.52  E-value=2.8e-05  Score=61.07  Aligned_cols=49  Identities=10%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC----CcCCccccchhhhhccC
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG----LQRNGKSCRLRWINYLR   67 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~L~   67 (313)
                      ....||.||+..|.+++.+|+ .+|..|+..+.    .+||..++++||..+..
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999 56999999983    27999999999987554

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.51  E-value=3.6e-05  Score=60.53  Aligned_cols=45  Identities=16%  Similarity=0.341  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~   65 (313)
                      ...||+||-+++.+++..|| ++|..||..++ +||..+|.+.|..+
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence            56799999999999999999 78999999999 99999999987643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.39  E-value=0.00018  Score=55.92  Aligned_cols=57  Identities=14%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CCCcccccccCCcCCccccchhhhh
Q 045400            7 EKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGH--PCWSSVPINAGLQRNGKSCRLRWIN   64 (313)
Q Consensus         7 ~k~~~~~kp~~kkg~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~Rt~~QCr~Rw~~   64 (313)
                      -|-+...++..+--.||.|||..|+.+..+-|.  ..|..||..++ +|++.|+++|++.
T Consensus        21 AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             eccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            344434566677788999999999999999875  46999999999 9999999999987

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.37  E-value=0.00076  Score=59.48  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcC--CCCCcccccc--cCCcCCccccch-------hhhhcc-----------------
Q 045400           15 PKHRKGLWSPEEDQRLKNYVLQHG--HPCWSSVPIN--AGLQRNGKSCRL-------RWINYL-----------------   66 (313)
Q Consensus        15 p~~kkg~WT~EED~~L~~~V~kyg--~~~W~~IA~~--l~~~Rt~~QCr~-------Rw~~~L-----------------   66 (313)
                      |+-....||..|-..|+.++.+||  ..+|..|+..  +. +|+...++.       +....+                 
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~   81 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV   81 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            445566799999999999999999  5789999854  44 565533322       000000                 


Q ss_pred             ------------------------------------------CC-----CccCcccCHHHHHHHHHHHHHhC-Cchhhhc
Q 045400           67 ------------------------------------------RP-----GLKRGVFNMQEEETILTLHRLLG-NKWSQIA   98 (313)
Q Consensus        67 ------------------------------------------~p-----~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia   98 (313)
                                                                -|     ......||++||..||.++.+|| +.|..|.
T Consensus        82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir  161 (211)
T 4b4c_A           82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK  161 (211)
T ss_dssp             -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence                                                      00     00112599999999999999999 8899887


Q ss_pred             c--cC------------CCCCHHHHHHHHHHHHHH
Q 045400           99 Q--HL------------PGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        99 ~--~l------------~gRT~~q~knrw~~llkk  119 (313)
                      .  .|            ..+++..+..|...+|+-
T Consensus       162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence            5  21            124566899998777663

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.98  E-value=6.9e-05  Score=57.46  Aligned_cols=50  Identities=20%  Similarity=0.460  Sum_probs=40.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCC---------CCCcccccccC---CcCCccccchhhhhcc
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGH---------PCWSSVPINAG---LQRNGKSCRLRWINYL   66 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~---------~~W~~IA~~l~---~~Rt~~QCr~Rw~~~L   66 (313)
                      .+...||.+|...|+++......         ..|..||..|.   -.||+.||+.+|.+..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999976421         14999998853   4699999999998754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.81  E-value=0.00061  Score=52.09  Aligned_cols=49  Identities=18%  Similarity=0.430  Sum_probs=40.0

Q ss_pred             CcccCHHHHHHHHHHHHHhCC----------chhhhcccCC----CCCHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGN----------KWSQIAQHLP----GRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~----------~W~~Ia~~l~----gRT~~q~knrw~~llkk~  120 (313)
                      ...||.+|-..||.+...+..          .|..||..|.    .||+.||+.+|..|.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999976321          4999998762    699999999999876653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.77  E-value=0.00023  Score=52.46  Aligned_cols=50  Identities=12%  Similarity=0.248  Sum_probs=42.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCC--CCCcccccccCCcCCccccchhhhhccC
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGH--PCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      .-.--.||.|||..|+..+.+-|+  .-|..||..+  +|++.|+..||...+.
T Consensus        11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            344457999999999999999985  3599999887  5999999999987543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.12  E-value=0.012  Score=56.78  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=76.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch-------hhhhc---------------------------
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL-------RWINY---------------------------   65 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~---------------------------   65 (313)
                      +-||.-|=..++.++.+||-.+-..||..|+.++|...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999998889999999965677766553       11100                           


Q ss_pred             -------------c---CCCc--cCcccCHHHHHHHHHHHHHhCC----chhhhcc------------cCCCCCHHHHHH
Q 045400           66 -------------L---RPGL--KRGVFNMQEEETILTLHRLLGN----KWSQIAQ------------HLPGRTDNEIKN  111 (313)
Q Consensus        66 -------------L---~p~l--kk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~------------~l~gRT~~q~kn  111 (313)
                                   |   .+..  +...||++||..||-++.+||-    .|..|-.            +|..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0   0111  3446999999999999999994    4998843            247799999999


Q ss_pred             HHHHHHHHH
Q 045400          112 YWHSHLKKK  120 (313)
Q Consensus       112 rw~~llkk~  120 (313)
                      |-..|++-.
T Consensus       284 Rc~tLi~~I  292 (374)
T 2y9y_A          284 RGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.89  E-value=0.017  Score=42.18  Aligned_cols=49  Identities=12%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             ccCcccCHHHHHHHHHHHHHhCCc---hhhhcccC--CCCCHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLGNK---WSQIAQHL--PGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G~~---W~~Ia~~l--~gRT~~q~knrw~~llk  118 (313)
                      ..+-.||+|..++++++|.++|..   +..|.+.|  +|.|..+|+.|.++|..
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            356689999999999999999954   67888875  79999999999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.45  E-value=0.0057  Score=47.85  Aligned_cols=49  Identities=10%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC----CcCCccccchhhhhccC
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG----LQRNGKSCRLRWINYLR   67 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~L~   67 (313)
                      +-..||.||...|.+++.+|+ .+|.-|+....    ..||..+.++||..+..
T Consensus        29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999 56999998864    26999999999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.88  E-value=0.16  Score=47.68  Aligned_cols=47  Identities=15%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             cccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +.||..|...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999995 699999999999999998887766654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=90.87  E-value=0.12  Score=37.63  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=35.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCC--CcccccccCC-cCCccccchhhhhc
Q 045400           16 KHRKGLWSPEEDQRLKNYVLQHGHPC--WSSVPINAGL-QRNGKSCRLRWINY   65 (313)
Q Consensus        16 ~~kkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~-~Rt~~QCr~Rw~~~   65 (313)
                      +..+-.||+|.-+++.+||...|...  +..|.+.|+. |.|..+++.|.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44566799999999999999999331  4566655442 56777777765543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.57  E-value=0.25  Score=43.13  Aligned_cols=52  Identities=12%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             CccCcccCHHHHHHHHHHHHHhC---Cchhhhccc--CCCCCHHHHHHHHHHHHHHH
Q 045400           69 GLKRGVFNMQEEETILTLHRLLG---NKWSQIAQH--LPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        69 ~lkk~~WT~EED~~Ll~lv~~~G---~~W~~Ia~~--l~gRT~~q~knrw~~llkk~  120 (313)
                      .-....||+.|-..|++++.+||   .+|..|++.  |.++|...|+..+..++...
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            34567899999999999999999   469999864  78999999999887766653

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.34  E-value=0.19  Score=46.32  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCccccc
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPI   47 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~   47 (313)
                      ..|+.+||..|+..|.+||.+.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-17
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-16
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-08
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-05
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-09
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	5e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-05
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	6e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-11
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	6e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	8e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	4e-06

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
           KG W+ EEDQRL   V ++G   WS +  +    R GK CR RW N+L P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 70  LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK 118
           L +G +  +E++ ++ L +  G  +WS IA+HL GR   + +  WH+HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (171), Expect = 2e-16
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
          K  W+ EED++LK  V Q+G   W  +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 72  RGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK 118
           +  +  +E+E +  L    G + W  IA +LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 6e-14
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLR 67
          ++  W  EED+ L++ V ++G   WS + ++     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 71  KRGVFNMQEEETILTLHRLLGNK-WSQIAQHLP--GRTDNEIKNYWHSHLK 118
           KR  +  +E++ + +  R  G   WS+I  H     RT   +K+ W +  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 13/84 (15%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSVPINA---GLQRNGKSCRLRWINYLR-----PGLKRG 73
          +S  E + L   V   G   W  V + A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 74 VFNMQEE-ETILTLHRLLGNKWSQ 96
              Q+  + +L  H      WSQ
Sbjct: 63 EPVPQDLLDRVLAAHA----YWSQ 82

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 72  RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK 118
           +  +  +E+  I   H+ LGN+W++IA+ LPGRTDN IKN+W+S ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67
          K  W+ EED+ +     + G+       +  G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQ-RNGKSCRLRWINYLRPGL 70
          +K  W+ EE + +K  V ++G   W+++  N     R     + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 71  KRGVFNMQEEETILTLHRLLGNK-WSQIAQH--LPGRTDNEIKNYWHSHLKKKL 121
           K+  + ++E E +    +  G   W+ I+++     RT   IK+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 6e-12
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 71  KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119
              +++ QE+ET           +  IA  L  +T  E   Y++   K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 71  KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK--LEEME 128
               +  +E+   +   R  G  +  I+  +  ++  ++KN++ ++ ++      L+E E
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 129 A 129
           A
Sbjct: 64  A 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL-RPGLKRGV 74
          +     W+ EE       + ++G   + ++    G  ++    +  ++NY  R  +   +
Sbjct: 2  QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVL 59

Query: 75 FNMQEE 80
             + E
Sbjct: 60 QEWEAE 65

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 72  RGVFNMQEEETILTLHRLLGNK------WSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLE 125
           +  F  +E+E IL + R    +      + +I+ ++P  T N I++ +  +L K+L  + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 126 EME 128
           E++
Sbjct: 61  EVD 63

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 19 KGLWSPEEDQRLKNYVLQHGH-----PCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRG 73
          K  ++ EED+ + + V ++         +  +         G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 74 VFNMQEEETILTLH 87
              +  + +    
Sbjct: 60 YEVDKFGKLVRDDD 73

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 7e-11
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEE 81
          W+ EE +  +  + +     W+ +    G  R     +     Y +  +K G+      +
Sbjct: 5  WTIEEKELFEQGLAKF-GRRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 4e-10
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 78  QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121
           +E+E         G +W++I++ +  RT  ++K+Y   + K K+
Sbjct: 8   EEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 10 IAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGL--QRNGKSCRLRW 62
          + K + +  +  W+  + + L+  + Q+           A     ++ + C  R+
Sbjct: 3  LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 6e-10
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 22 WSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY 65
          W+ +E+  L   V+  G   W  V       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.4 bits (102), Expect = 8e-07
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 78  QEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAKLEE 126
           +E +       +      ++W+ +A+ + GRT  E+K ++   L + +  +E 
Sbjct: 7   KENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKYIES 58

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 43  SSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK---WSQIAQ 99
            S    A  + +  +           G K  ++  + +  ILT+ +  G +   +S I+Q
Sbjct: 4   GSSGAGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ 63

Query: 100 HLPGRTDNEIKNYWHSHLK 118
            L  +T  E+ + +   ++
Sbjct: 64  QLGNKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.76
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.58
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.54
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.52
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.47
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.4
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.34
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.29
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.22
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.14
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.12
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.11
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.83
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.16
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.11
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.03
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.01
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.36
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.34
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.6
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.8
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.7
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.46
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.75
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	88.4
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	82.22

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=6.3e-21  Score=147.18  Aligned_cols=70  Identities=17%  Similarity=0.131  Sum_probs=65.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCC-----CcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHH
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPC-----WSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRL   89 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~-----W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~   89 (313)
                      |+.||+|||++|+++|.+||...     |..||..|| |||++|||+||.++|+|.+++++||.+||++|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            68999999999999999999654     999999999 99999999999999999999999999999998876543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.8e-19  Score=124.69  Aligned_cols=52  Identities=44%  Similarity=0.727  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      ++||+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.7e-18  Score=119.30  Aligned_cols=50  Identities=34%  Similarity=0.660  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG   69 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~   69 (313)
                      |++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68899999999999999999889999999999 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=6e-17  Score=111.02  Aligned_cols=47  Identities=45%  Similarity=0.889  Sum_probs=44.9

Q ss_pred             CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      ++|||+|||++|+++|.+||.+|+.||++|||||+.+|++||..++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.2e-16  Score=110.43  Aligned_cols=50  Identities=34%  Similarity=0.775  Sum_probs=47.0

Q ss_pred             ccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +.+|+||+|||++|+++|.+|| .+|..||+.|++||+.||++||..+|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5789999999999999999999 5799999999999999999999998764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.58  E-value=1.4e-16  Score=121.66  Aligned_cols=73  Identities=25%  Similarity=0.318  Sum_probs=59.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCccccccc---CCcCCccccchhhhhccC-----CCccCcccCHHHHHHHHHHHHHhCC
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPINA---GLQRNGKSCRLRWINYLR-----PGLKRGVFNMQEEETILTLHRLLGN   92 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l---~~~Rt~~QCr~Rw~~~L~-----p~lkk~~WT~EED~~Ll~lv~~~G~   92 (313)
                      +||+|||++|+++|.+||..+|..|+..+   .++||+.||++||.++|+     |..+++.|+++|   |+..|...+.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            79999999999999999998999998752   238999999999999984     677888888776   4555555555


Q ss_pred             chhh
Q 045400           93 KWSQ   96 (313)
Q Consensus        93 ~W~~   96 (313)
                      .|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.2e-16  Score=109.62  Aligned_cols=54  Identities=26%  Similarity=0.481  Sum_probs=48.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC-CcCCccccchhhhhccCCCcc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG-LQRNGKSCRLRWINYLRPGLK   71 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~-~~Rt~~QCr~Rw~~~L~p~lk   71 (313)
                      ++++||+|||++|+++|.+||..+|..||..++ .+||+.||++||+++++|.+.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999889999998732 389999999999999998763

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.1e-15  Score=102.93  Aligned_cols=48  Identities=29%  Similarity=0.558  Sum_probs=45.0

Q ss_pred             CcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      +++||+|||++|+++|.+|| ..|..||..|+|||+.||++||..+|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998864

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.4e-15  Score=102.13  Aligned_cols=47  Identities=21%  Similarity=0.432  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      |++||+|||++|+++|.+||. +|..||..|| |||+.||+.||..+|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            679999999999999999995 6999999999 9999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.1e-15  Score=104.43  Aligned_cols=50  Identities=24%  Similarity=0.431  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC-CcCCccccchhhhhccC
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG-LQRNGKSCRLRWINYLR   67 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~-~~Rt~~QCr~Rw~~~L~   67 (313)
                      ++++||+|||++|+++|.+||..+|..||..++ .+||+.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999989999998753 38999999999998653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.2e-15  Score=102.22  Aligned_cols=45  Identities=20%  Similarity=0.554  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      .||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHhC
Confidence            499999999999999999989999999999 999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.3e-14  Score=98.02  Aligned_cols=48  Identities=29%  Similarity=0.511  Sum_probs=43.4

Q ss_pred             cCcccCHHHHHHHHHHHHHhCC-chhhhcccC--CCCCHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGN-KWSQIAQHL--PGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l--~gRT~~q~knrw~~llk  118 (313)
                      ++++||+|||+.|+++|.+||. +|+.|++.+  .+||+.||++||+.+.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 899999875  59999999999998754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.3e-14  Score=99.55  Aligned_cols=50  Identities=22%  Similarity=0.422  Sum_probs=45.3

Q ss_pred             cCcccCHHHHHHHHHHHHHhC-Cchhhhccc--CCCCCHHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLG-NKWSQIAQH--LPGRTDNEIKNYWHSHLKKK  120 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~--l~gRT~~q~knrw~~llkk~  120 (313)
                      ++.+||+|||++|+++|.+|| .+|..|++.  |++||+.||++||+.++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            578999999999999999999 579999987  56999999999999988753

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6e-14  Score=100.40  Aligned_cols=52  Identities=15%  Similarity=0.399  Sum_probs=47.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCC---CCcccccccCCcCCccccchhhhh
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHP---CWSSVPINAGLQRNGKSCRLRWIN   64 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~---~W~~IA~~l~~~Rt~~QCr~Rw~~   64 (313)
                      ..++...+++||+|||++|+++|.+||..   +|..||..|| +||+.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            35788889999999999999999999965   4999999999 9999999999974

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=4.4e-14  Score=108.34  Aligned_cols=52  Identities=27%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             CcccCHHHHHHHHHHHHHhCCc------hhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNK------WSQIAQHLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~------W~~Ia~~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      +++||+|||++|+++|.+||..      |..||+.|||||+.||++||+.+|.+.+.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5799999999999999999964      999999999999999999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-14  Score=103.58  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHH
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQE   79 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EE   79 (313)
                      ..+||+|||++|+++|.+|| .+|..||..|| +||+.||+.||..++.+..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            35799999999999999999 68999999999 9999999999999998887777766554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3e-13  Score=92.24  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=40.7

Q ss_pred             ccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      .||+|||++|+++|.+|| ..|..||++|++||+.||+.||..+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5699999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.7e-13  Score=97.42  Aligned_cols=49  Identities=22%  Similarity=0.400  Sum_probs=46.0

Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      ..||+|||++|++++.+||.+|..||++||+||+.||++||..++++..
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999999999999999999998887654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=93.77  Aligned_cols=50  Identities=10%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             CCCccCcccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHHHH
Q 045400           67 RPGLKRGVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        67 ~p~lkk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      .+...+.+||+|||++|+++|.+||.    +|..||..|||||+.||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    499999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.1e-12  Score=99.81  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             cccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCc---hhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400           47 INAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK---WSQIAQHLPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        47 ~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~---W~~Ia~~l~gRT~~q~knrw~~llkk~l  121 (313)
                      ..+| ..+..++..++.+..++..+...||+|||+.||..++++|.+   |..||+.|+|||+.||++||..+++...
T Consensus         9 ~~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_           9 GALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3455 677788889999888888889999999999999999999976   9999999999999999999999887653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.24  E-value=4.7e-12  Score=91.22  Aligned_cols=46  Identities=17%  Similarity=0.424  Sum_probs=41.9

Q ss_pred             cccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~~llk  118 (313)
                      .+||+|||++|++++.+||.    +|..||.+|||||+.||+.||..+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999995    49999999999999999999976543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.22  E-value=1.1e-12  Score=94.67  Aligned_cols=44  Identities=14%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC---CcccccccCCcCCccccchhhhh
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPC---WSSVPINAGLQRNGKSCRLRWIN   64 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~---W~~IA~~l~~~Rt~~QCr~Rw~~   64 (313)
                      .+||+|||++|+++|.+||...   |.+||..|| |||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999654   999999999 9999999999954

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.14  E-value=2.1e-11  Score=92.40  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=43.8

Q ss_pred             ccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKKKL  121 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk~l  121 (313)
                      |||+|||++|+++|.+||. +|+.|++.    +++||+.||++||+.+|+...
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~   54 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc
Confidence            8999999999999999995 89999974    689999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2e-11  Score=89.02  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             ccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045400           70 LKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        70 lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      ....+||+||+++|++++.+||..|..||++|||||..||+++|...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999754

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-11  Score=90.39  Aligned_cols=53  Identities=15%  Similarity=0.275  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400           12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      ..+++....+||+|||++|+++|.+|| .+|..||..|| +||..||+.+|....
T Consensus        10 ~~~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          10 VYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            345666778899999999999999999 67999999999 999999999998654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-11  Score=87.92  Aligned_cols=48  Identities=13%  Similarity=0.290  Sum_probs=44.7

Q ss_pred             CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk  119 (313)
                      ..+||+|||++|++++..||..|..||++|+|||..||+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987653

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.8e-11  Score=86.73  Aligned_cols=47  Identities=17%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      ..+||+|||++|.+++.+|| .+|..||..|| +||+.||+.||..+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            46799999999999999999 67999999999 9999999999998654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=5.8e-10  Score=85.91  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCCC--CcccccccCCcCCccccchhhhhc
Q 045400           13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPC--WSSVPINAGLQRNGKSCRLRWINY   65 (313)
Q Consensus        13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~~Rt~~QCr~Rw~~~   65 (313)
                      .++..+...||+|||+.|++.++++|...  |..||+.|+ +|++.|||.||...
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            45667788999999999999999999543  999999999 99999999999863

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=1.2e-06  Score=61.10  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=39.9

Q ss_pred             cccCHHHHHHHHHHHHHhCCchhhhccc-CCCCCHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLGNKWSQIAQH-LPGRTDNEIKNYWHS  115 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~-l~gRT~~q~knrw~~  115 (313)
                      ..||+||..++.+++..||+.|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.2e-07  Score=62.21  Aligned_cols=43  Identities=14%  Similarity=0.278  Sum_probs=39.4

Q ss_pred             cccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHH
Q 045400           73 GVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSH  116 (313)
Q Consensus        73 ~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~l  116 (313)
                      ++||.||+.+|.+++.+|+    .+|..||..| |||..+|..||+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999997    3599999999 99999999999764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=8.3e-07  Score=61.95  Aligned_cols=43  Identities=12%  Similarity=0.130  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccc-cCCcCCccccchhhhhc
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPIN-AGLQRNGKSCRLRWINY   65 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~-l~~~Rt~~QCr~Rw~~~   65 (313)
                      .||+||-+++.+++..|| .+|..|++. +| +||..||...|..+
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            699999999999999999 689999975 56 99999999988754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.1e-07  Score=63.55  Aligned_cols=45  Identities=13%  Similarity=0.258  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhcc
Q 045400           20 GLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYL   66 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L   66 (313)
                      +.||+||+++|.+++.+|.   +.+|.+||..++  |+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            5799999999999999995   346999999985  99999999997543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.00018  Score=46.93  Aligned_cols=46  Identities=22%  Similarity=0.455  Sum_probs=40.2

Q ss_pred             CcccCHHHHHHHHHHHHHhCCchhhhcccC---CCCCHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLGNKWSQIAQHL---PGRTDNEIKNYWHSHL  117 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l---~gRT~~q~knrw~~ll  117 (313)
                      +..||+||..-|+..|+.+|..|..|--.+   |||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            356999999999999999999999997543   9999999999998753

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.34  E-value=0.00017  Score=51.07  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=40.8

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCchh---hhccc--CCCCCHHHHHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNKWS---QIAQH--LPGRTDNEIKNYWHSHLKK  119 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~W~---~Ia~~--l~gRT~~q~knrw~~llkk  119 (313)
                      .+-.||+||.+++++++..+|..|.   .|...  ++|+|..+|+.|.++|.-+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            3557999999999999999998874   56555  5999999999999887543

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00044  Score=48.07  Aligned_cols=47  Identities=23%  Similarity=0.414  Sum_probs=40.1

Q ss_pred             CcccCHHHHHHHHHHHHHhC--------Cc-hhhhcc-cCCCCCHHHHHHHHHHHHH
Q 045400           72 RGVFNMQEEETILTLHRLLG--------NK-WSQIAQ-HLPGRTDNEIKNYWHSHLK  118 (313)
Q Consensus        72 k~~WT~EED~~Ll~lv~~~G--------~~-W~~Ia~-~l~gRT~~q~knrw~~llk  118 (313)
                      +.+||.|||+.|++.|+++.        +. |..+++ .+|.+|-...|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999985 6799999999999987664

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00029  Score=49.05  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCC--------CCccccc-ccCCcCCccccchhhhhccC
Q 045400           19 KGLWSPEEDQRLKNYVLQHGHP--------CWSSVPI-NAGLQRNGKSCRLRWINYLR   67 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg~~--------~W~~IA~-~l~~~Rt~~QCr~Rw~~~L~   67 (313)
                      +.+||.|||+.|.+.|+++...        =|..+++ .++ .+|-.+-|+||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998422        2999984 567 8999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.60  E-value=0.00055  Score=48.31  Aligned_cols=47  Identities=11%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCC--cccccc--cCCcCCccccchhhhhc
Q 045400           18 RKGLWSPEEDQRLKNYVLQHGHPCW--SSVPIN--AGLQRNGKSCRLRWINY   65 (313)
Q Consensus        18 kkg~WT~EED~~L~~~V~kyg~~~W--~~IA~~--l~~~Rt~~QCr~Rw~~~   65 (313)
                      .+-.||+||-++++++|..+|...|  ..|...  ++ ++|..||+-+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~-~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVD-KLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCC-CCCHHHHHHHHHHH
Confidence            3456999999999999999995433  245444  44 78999998876554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0026  Score=45.08  Aligned_cols=49  Identities=22%  Similarity=0.423  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhccCC
Q 045400           19 KGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYLRP   68 (313)
Q Consensus        19 kg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p   68 (313)
                      -+.|+++|=++|..++....   ++-|..||..+| .|++..|...|..-+.-
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            46899999999999998764   345999999999 99999999999887654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0072  Score=42.79  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=40.4

Q ss_pred             cCcccCHHHHHHHHHHHHHhCCc----hhhhcccCCCCCHHHHHHHHHH
Q 045400           71 KRGVFNMQEEETILTLHRLLGNK----WSQIAQHLPGRTDNEIKNYWHS  115 (313)
Q Consensus        71 kk~~WT~EED~~Ll~lv~~~G~~----W~~Ia~~l~gRT~~q~knrw~~  115 (313)
                      .-+.|+++|-++|-.++..++..    |..+|..+..||+..|..+|..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            34589999999999999999853    9999999999999999998865

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.46  E-value=0.17  Score=33.61  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=38.9

Q ss_pred             ccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHH
Q 045400           74 VFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHL  117 (313)
Q Consensus        74 ~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~ll  117 (313)
                      .|++-|=..++.+..+||. .-..||..|.|+|..+|+.......
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4999999999999999995 6999999999999999988765543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.75  E-value=0.32  Score=38.02  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             CccCcccCHHHHHHHHHHHHHhC-Cc---hhhhcc------------cCCCCCHHHHHHHHHHHHHHHHHH
Q 045400           69 GLKRGVFNMQEEETILTLHRLLG-NK---WSQIAQ------------HLPGRTDNEIKNYWHSHLKKKLAK  123 (313)
Q Consensus        69 ~lkk~~WT~EED~~Ll~lv~~~G-~~---W~~Ia~------------~l~gRT~~q~knrw~~llkk~l~~  123 (313)
                      ..++..+|+|||.-||-.+.++| ..   |..|-.            +|..||+..+..|-..+++-..+.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 44   887742            346799999999999988865544

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.40  E-value=0.098  Score=33.63  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCCccccccc--CCcCCccccchhhhh
Q 045400           20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINA--GLQRNGKSCRLRWIN   64 (313)
Q Consensus        20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l--~~~Rt~~QCr~Rw~~   64 (313)
                      ..||.||-.-|...|+++| ..|..|-=.+  .+||+......+|+.
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            4599999999999999999 5698885443  348988888777765

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.22  E-value=0.37  Score=31.87  Aligned_cols=39  Identities=5%  Similarity=0.088  Sum_probs=34.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch
Q 045400           21 LWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL   60 (313)
Q Consensus        21 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~   60 (313)
                      .|+.-|=..++.+..+||-.+-..||..|. ++|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHHH
Confidence            399999999999999999889999999998 898877543