Citrus Sinensis ID: 045410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNKESAYQHA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcEEEEEEEEccccHHHcHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccHHcccccccccccccccEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccHHHHccc
Coil and Loop (DISEMBL)
meneihstlvdqnsrspppdsqrpkggwrSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIwggsssltaipgallsdtyLGRFRTLLYGSIASFLGMGIMTLtasipklrppdctgaqcpqpegwqLSILYAGLALLAigsggirpcniafgadqfdtttpkgksqLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYiiknpqgsvfVDMAKVITASCRKRkvnlgqasgnslydppltqseteskttklphtnrfrcldkaavivdsseldddgkakngwRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQtnkrfgsfnvppgwmGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSalqhgsfespiSILVlvpqfsfsgltEGFAAVAVMEFLTTqlpesmrtvsGAVFFLSLSISSYINSALVNIIHGLTKkyakapwlggtdlnkdtLDYFYFTIAALEVVNLLYFNFFACrfvssnaigkkesqseeksqNKESAYQHA
Flexible Loop (DISEMBL)
meneihstlvdqnsrspppdsqrpkggWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRkvnlgqasgnslydppltqseteskttklphtnrfrcldKAAVIVDsseldddgkakNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALqhgsfespISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAigkkesqseeksqnkesayqha
Low Complexity Region (SEG)
MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQlsilyaglallaigsggiRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFtvalvvaltavvYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGkkesqseeksqnkesAYQHA
Disordered region (IsUnstruct)
**************************GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN*****************************NRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSS************************
Disordered Region (DISOPRED)
*****HST******************GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPD******P**EGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNS**********************RFRCLD********************WRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRF***************************
Disordered Region (DISEMBL)
**************************GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPL***********LPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAI*********************
Disordered Region (DISPRO)
********LVDQN**SPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLT******KTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNA**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNKESAYQHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	589	2.2.26 [Sep-21-2011]
Q3E8X3	559	Probable peptide/nitrate	yes	no	0.937	0.987	0.567	0.0
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.967	0.919	0.410	1e-132
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.938	0.960	0.409	1e-118
Q9LV10	616	Probable peptide/nitrate	no	no	0.886	0.847	0.389	1e-114
Q9M9V7	587	Probable peptide/nitrate	no	no	0.926	0.930	0.379	1e-113
Q944G5	636	Probable peptide/nitrate	no	no	0.889	0.823	0.392	1e-112
Q9SX20	596	Probable nitrite transpor	no	no	0.938	0.927	0.384	1e-106
Q9M817	607	Probable peptide transpor	no	no	0.923	0.896	0.345	1e-102
Q9CAR9	555	Putative peptide/nitrate	no	no	0.923	0.980	0.365	1e-102
Q8LPL2	591	Probable peptide/nitrate	no	no	0.925	0.922	0.350	5e-99

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/566 (56%), Positives = 424/566 (74%), Gaps = 14/566 (2%)

Query: 10  VDQNSRSPPPDS--QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILL 67
           +D  S SP   +  ++ KGGWR+IKYI+ NE+FEKLASMSLI N++VYL TKYN+ G+ L
Sbjct: 1   MDVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFL 60

Query: 68  VNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC 127
           VNV++IW GS ++  + GA +SD YLGRF TLL GSIASF+GMGI  LTA++P LRP  C
Sbjct: 61  VNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC 120

Query: 128 TG-AQCP-QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN 185
              + C  QP  WQL +L++GL LLAIG+GG+RPCNIAFGADQFDT+T KGK+ LE+FFN
Sbjct: 121 IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFN 180

Query: 186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSV 245
           WWYFSFTVALV+ALT VVYIQTN+SW++GF IPT C  LSI  F+IG HTYI    +GSV
Sbjct: 181 WWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSV 240

Query: 246 FVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIV 305
           F D+ KV+TA+C+KRKV  G  S  + Y  P   S   S TT +   +R R  DKA+++ 
Sbjct: 241 FADIVKVVTAACKKRKVKPG--SDITFYIGP---SNDGSPTTLVRDKHRLRFFDKASIVT 295

Query: 306 DSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQT 365
           + +EL++DG AK  WRLCS+ QV+ LK + A+ PVW+TGI CF+  DQQN  GILQA+Q 
Sbjct: 296 NPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355

Query: 366 NKRFG--SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL 423
           +K FG  +F VP GWM L+SM+TL+ WI  YE V +P+ +++TG+K RLT++ RI   I+
Sbjct: 356 DKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIE--IV 413

Query: 424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ 483
           M I+ ++VAGF E+KRR SAL++GSF SP+SI++L+PQF+ +GLTE F+AVA+MEFLT +
Sbjct: 414 MGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVR 473

Query: 484 LPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFT 543
           +PE MR V+GA+FFLS SI+SYI + L+N+I  +T+K  K+ WLG  DLNK+ L+ ++F 
Sbjct: 474 MPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFFI 532

Query: 544 IAALEVVNLLYFNFFACRFVSSNAIG 569
           IA ++V NLLYF  FA R+ + N  G
Sbjct: 533 IAGIQVANLLYFRLFASRYATENKKG 558

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  473 bits (1217), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/589 (41%), Positives = 368/589 (62%), Gaps = 19/589 (3%)

Query: 9   LVDQNSRSPPPDS-------QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN 61
           +VD   R   P S       ++  GGWR++ +ILGNET E+L S+ L+AN  VYL   ++
Sbjct: 29  VVDPYKRISSPGSILDAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFH 88

Query: 62  MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPK 121
           ++ +   NV++IW G ++LT + GA +SDTY+GRF+T+ + S A+ LG+  +TLTAS P+
Sbjct: 89  LEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQ 148

Query: 122 LRPPDCTGAQ---CPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS 178
           L P  C       C  P   Q+ +L  GL  L++GSGGIRPC+I FG DQFD  T +G  
Sbjct: 149 LHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVK 208

Query: 179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYII 238
            + SFFNW+Y +FTV L++  T VVYIQ  VSWI+GF+IPTG   L++V+F  G   Y+ 
Sbjct: 209 GVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVY 268

Query: 239 KNPQGSVFVDMAKVITASCRKRKVNL-GQASGNSLYDPPLTQSETESKTTKLPHTNRFRC 297
             P+GS+F  +A+VI A+ +KRK+ L  +  G   Y  P  +S   S  +KL  +N+FRC
Sbjct: 269 VKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKS---SVLSKLHRSNQFRC 325

Query: 298 LDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTI 357
           LDKAAV+++  +L  +G   + WRLCS+ +VE++K L+ + P+W  GI    AM  Q T 
Sbjct: 326 LDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTF 384

Query: 358 GILQAIQTNKRFG-SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQ 416
            + QA++ ++  G  F +P G + +IS+LT+  ++ FY+RVFVP  +++TG K  +T+ Q
Sbjct: 385 TVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQ 444

Query: 417 RITIGILMAILSLLVAGFVERKRRLSALQHG--SFESPISILVLVPQFSFSGLTEGFAAV 474
           RI  GI+ AI S++VAG VER RR+ ++  G  +  +P+S+  L PQ    GL E F  +
Sbjct: 445 RIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNII 504

Query: 475 AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNK 534
             +EF  +Q PE MR+++ ++F LS + SSY++S LV ++H  +  + +  WL   +LN 
Sbjct: 505 GQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWL-NKNLNA 563

Query: 535 DTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNKE 583
             LDYFY+ IA L VVNL+YF + A  +     +  ++ + ++ S + E
Sbjct: 564 GKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVE 612

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 352/576 (61%), Gaps = 23/576 (3%)

Query: 10  VDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVN 69
           V +N +  P   ++  GGWR+I +ILGNET EKL S+ + AN  +YLR  ++M+ +   N
Sbjct: 3   VVENRKILP---EKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFN 59

Query: 70  VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG 129
           V  +W G ++   + GAL+SD Y+GRF+T+ Y S+ S LG+  +TLTA +P+L PP C  
Sbjct: 60  VYYLWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNN 119

Query: 130 A---QCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW 186
               +C  P   QL IL+ GL  L+IGSGGIRPC+I FG DQFD  T +G   + SFFNW
Sbjct: 120 PHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNW 179

Query: 187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVF 246
           +Y + T+ L+ + T VVY+QT VSW++GF+IPT     ++V+F +G   Y+   P+GSVF
Sbjct: 180 YYLTLTMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVF 238

Query: 247 VDMAKVITASCRKR--KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVI 304
             +A+VI A+ +KR  K++L        Y+PP+         +KLP T++F+ LDKAAVI
Sbjct: 239 SGIARVIVAARKKRDLKISLVDDGTEEYYEPPV----KPGVLSKLPLTDQFKFLDKAAVI 294

Query: 305 VDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQ 364
           +D  +L  +G   N WRLCS+ +VE++K L+ + PVW  GI   +AM  Q T  + QA +
Sbjct: 295 LD-GDLTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATK 353

Query: 365 TNKRFG-SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL 423
            ++  G  F +P   + +IS +T+  W+  YE + VP   +M  +K R+T+ QR+ IGI+
Sbjct: 354 MDRHMGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIV 411

Query: 424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ 483
            AILS+  AGFVE  RR  A +     + +S+  L       GL E F  + ++EF  +Q
Sbjct: 412 FAILSMFTAGFVEGVRRTRATEM----TQMSVFWLALPLILMGLCESFNFIGLIEFFNSQ 467

Query: 484 LPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFT 543
            PE MR+++ ++F LS + ++Y++S LV  +H ++       WL   DL++  LDYFY+ 
Sbjct: 468 FPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWL-NKDLDRGKLDYFYYL 526

Query: 544 IAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKS 579
           IA L VVNL+YF + A R+    A  + E  +EEKS
Sbjct: 527 IAVLGVVNLVYFWYCAHRY-QYKAGSQIEDFNEEKS 561

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 323/544 (59%), Gaps = 22/544 (4%)

Query: 27  GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA 86
           GW+ + +I+GNETFEKL  +  ++N+ VYL   +N+  I    +++ + G+ +      A
Sbjct: 46  GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105

Query: 87  LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ---CPQPEGWQLSIL 143
            L DTY GR++TL    IA FLG  ++ LTA++P+L P  C  A    C  P G Q++ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165

Query: 144 YAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVV 203
             GL  L +G+GGIRPCN+AFGADQF+  +  GK  ++SFFNW++F+FT A +++LT VV
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVV 225

Query: 204 YIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN 263
           Y+Q+NVSW +G  IP    FL+ ++F  G   Y+     GS    +A+VI  + +KR + 
Sbjct: 226 YVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK 285

Query: 264 LGQASGNSLYD--PPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWR 321
             +    +LY+  PP      +   +KL +T++FR LDKAA++    +L  DGK  + W+
Sbjct: 286 PAKQPWLNLYNYYPP------KYANSKLKYTDQFRFLDKAAILTPEDKLQPDGKPADPWK 339

Query: 322 LCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS--FNVPPGWM 379
           LC++ QVE++K +V + P+W      +L + QQ T  + QA+Q+++R GS  F +P    
Sbjct: 340 LCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATY 399

Query: 380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR 439
            +  M  ++ +I  Y+RV VP  +++TG    +T+ QRI  GI  A  SL+VAGFVE +R
Sbjct: 400 VVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERR 459

Query: 440 RLSALQHGSFE--------SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTV 491
           R  AL   +          S +S + L+PQ S +G+ E FAA+  MEF   Q PE+MR+ 
Sbjct: 460 RTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSF 519

Query: 492 SGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVN 551
           +G++F++   +SSY+ S L+  +H  T+  +   WL   DLNK  LD FYF IA +  VN
Sbjct: 520 AGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWL-AEDLNKGRLDLFYFMIAGILAVN 578

Query: 552 LLYF 555
             YF
Sbjct: 579 FAYF 582

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 335/572 (58%), Gaps = 26/572 (4%)

Query: 27  GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA 86
           GW+ + +I+GNETFEKL  +   +N+ +YL T +NM  I    VV+I+GG+S+   I  A
Sbjct: 22  GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81

Query: 87  LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT---GAQCPQPEGWQLSIL 143
            L D+Y GR++TL +  IA FLG   M LTA I  L P  C    G+ C  P   Q+  L
Sbjct: 82  FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141

Query: 144 YAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVV 203
              + LL IG+GGIRPCN+ FGADQFD  T +GK  +ESFFNW++F+FT A +V+LT +V
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIV 201

Query: 204 YIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN 263
           Y+Q+NVSW +G AIP     L  ++F  G   Y+     GS    + +VI  + +KR+  
Sbjct: 202 YVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR-- 259

Query: 264 LGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLC 323
           L     N LY+       ++ K +KL HT +FR LDK+A+     +L+ DG   + W+LC
Sbjct: 260 LKPVGPNELYN----YIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLC 315

Query: 324 SLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRF--GSFNVPPGWMGL 381
           S+ QVE++K ++ + PVW++    +LA  QQ T  I Q++Q+++R   GSF +P G   +
Sbjct: 316 SMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTV 375

Query: 382 ISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRL 441
             ML ++ +I  Y+RV VP  +K TG+   +T  QR+  G+ + I S++V+  VE+ RR 
Sbjct: 376 FLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRK 435

Query: 442 SALQHGSFE--------SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSG 493
            AL   +          S +S + L+PQ    G+ +  A V  MEF   Q PE+MR+ +G
Sbjct: 436 VALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAG 495

Query: 494 AVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLL 553
           ++++  + ++SY+++ L++ +H  T+ ++   WL   DLNK  L+YFYF +A +  +NL 
Sbjct: 496 SLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWL-PEDLNKGRLEYFYFLVAGMMTLNLA 554

Query: 554 YFNFFACRFVSSNAIGKKESQSEEKSQNKESA 585
           YF       + S+    K+  +++K  +K SA
Sbjct: 555 YF------LLVSHWYRYKDVVAKDKDMDKTSA 580

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/540 (39%), Positives = 322/540 (59%), Gaps = 16/540 (2%)

Query: 27  GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA 86
           GW+ + +I+GNETFEKL  +  ++N+ VYL + +N+       +++ + G+ +      A
Sbjct: 64  GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAA 123

Query: 87  LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGA-QCPQPEGWQLSILYA 145
            L DTY GR++TL    IA FLG  ++ LTA+IP L P  C     C  P   Q+  L  
Sbjct: 124 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKISCEGPSVGQILFLLM 183

Query: 146 GLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYI 205
           GL  L +G+GGIRPCN+AFGADQF+  +  GK  + SFFNW++F+FT A +++LTAVVYI
Sbjct: 184 GLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYI 243

Query: 206 QTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLG 265
           Q+NVSW +G  IP    FL+ V+F  G   Y+     GS    +A+VI A+ +KR +   
Sbjct: 244 QSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPV 303

Query: 266 QASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSL 325
           +    +LY+       +    T L +T++FR LDKAA++    +L+ DG A + W+LC+L
Sbjct: 304 KQPWVNLYN----HIPSNYANTTLKYTDQFRFLDKAAIMTPEEKLNSDGTASDPWKLCTL 359

Query: 326 LQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS--FNVPPGWMGLIS 383
            QVE++K +V + P+W      +LA+  Q T  + QA+Q+++R GS  F +P     +  
Sbjct: 360 QQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFL 419

Query: 384 MLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSA 443
           M  ++ +I FY+RV VP  +++TG +  +++ QRI  G   AI+SLLV+GF+E +RR  A
Sbjct: 420 MTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFA 479

Query: 444 LQHGSFE--------SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV 495
           L   +          S +S L L+PQ + +G+ E FAA+  MEF   Q PE+M++ +G++
Sbjct: 480 LTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSI 539

Query: 496 FFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYF 555
           F++   +SSY+ S L++ +H  T       WL   DLNK  LDYFYF +  L VVN+ YF
Sbjct: 540 FYVGAGVSSYLASFLISTVHRTTAHSPSGNWL-AEDLNKAKLDYFYFMLTGLMVVNMAYF 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 337/575 (58%), Gaps = 22/575 (3%)

Query: 22  QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLT 81
            RPKGG  ++ +I  NE  EKLA +   ANM  YL T+ ++      N ++ + G+SSLT
Sbjct: 21  NRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLT 80

Query: 82  AIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ-CPQPEGWQL 140
            + GA ++D++ GRF T+ + SI   +GM ++T++A IP LRPP C G + C   +  QL
Sbjct: 81  PLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQL 140

Query: 141 SILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALT 200
           SILY  L L A+GSGGIRPC +AFGADQFD + P   ++  ++FNW+YF    A+++A+T
Sbjct: 141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVT 200

Query: 201 AVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKR 260
            +V+IQ NV W LG  IPT   FLS++ F+ G+  Y    P GS F  + +V  A+ RKR
Sbjct: 201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKR 260

Query: 261 KVNLGQASGNSLYDPPLTQSETE-----SKTTKLPHTNRFRCLDKAAVIVDSSELDDDGK 315
           K+ +       + DP L     E     S   KL HT     LDKAA++ +   L   G+
Sbjct: 261 KLRM-------VSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNL-KPGQ 312

Query: 316 AKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRF-GSFNV 374
             N WRL ++ +VE+LK ++ M P+  +GI    A  QQ T  + QA   N+    SF +
Sbjct: 313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQI 372

Query: 375 PPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGF 434
           P G M + + + + T I FY+RVFV +++K TG +  +T   R+ IG +++I++ LVAGF
Sbjct: 373 PAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGF 432

Query: 435 VERKRRLSALQHGSFES-----PISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR 489
           VE KR+  A++HG  +      PIS L L+PQ+   G+ E F ++  +EF   Q PESMR
Sbjct: 433 VEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMR 492

Query: 490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEV 549
           + + A+F++++SI +Y+++ LV ++H  + K   + WL   +LN+  L+YFY+ I  L+ 
Sbjct: 493 STATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQA 552

Query: 550 VNLLYFNFFACRFVSSNAIGKKESQSEEKSQNKES 584
           VNL+Y  +  C  + +    +     E+ S  KE 
Sbjct: 553 VNLVY--YLWCAKIYTYKPVQVHHSKEDSSPVKEE 585

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 335/570 (58%), Gaps = 26/570 (4%)

Query: 1   MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
           MEN  + T   Q   +   + ++ KGG  ++ +I+ NE FEK+AS  L+ NM +YL   Y
Sbjct: 1   MENPPNETEAKQIQTN---EGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDY 57

Query: 61  NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
                   NV+ +W  +S+ T + GA LSD+YLGRF T+   S++SFLGM ++ LTA +P
Sbjct: 58  RFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLP 117

Query: 121 KLRPPDC----TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDT-TTPK 175
           +++P  C     G+ C      QL++LY+  AL++IGSGGIRPC++AFGADQ D    PK
Sbjct: 118 QVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPK 177

Query: 176 GKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHT 235
            +  LESFF W+Y S  VA+++A T +VYIQ ++ W +GF +P     ++ ++F++    
Sbjct: 178 NERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPL 237

Query: 236 YIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRF 295
           Y+ +    S+F  +A+ I A+ +KRK++L     +  +D      ++E K      + + 
Sbjct: 238 YVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDS--FDCYYHMKDSEIKAP----SQKL 291

Query: 296 RCLDKAAVIVD-SSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQ 354
           R L+KA +I +   E+  DG A N WRLC+  +VE+LK L+ + P+W TGI   +    Q
Sbjct: 292 RFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSIN-TSQ 350

Query: 355 NTIGILQAIQTNKRF----GSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKI 410
           ++  +LQA   ++R      SF VP G  G+ +++ L+ W+  Y+R  +PL+ K+ G+  
Sbjct: 351 SSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPF 410

Query: 411 RLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESP-----ISILVLVPQFSFS 465
           RL+++ R+ +G+ M+ L++ ++  VE  RR  A+  G   +      IS + LVPQ+   
Sbjct: 411 RLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLH 470

Query: 466 GLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAP 525
           GL E   A+   EF  T+ P+SM +++ ++F L ++++S + S ++N ++ LT +  K  
Sbjct: 471 GLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKES 530

Query: 526 WLGGTDLNKDTLDYFYFTIAALEVVNLLYF 555
           W+   ++NK   +Y+Y+ +A +  +N++Y+
Sbjct: 531 WV-SDNINKGHYNYYYWVLAIMSFINVIYY 559

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 352/572 (61%), Gaps = 28/572 (4%)

Query: 1   MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
           M+NE  ++  D  +R      QR   GW+++ YI+GNET E+LA+  L+AN  VY+  +Y
Sbjct: 1   MDNEKGTSSSDLTTR------QRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREY 54

Query: 61  NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
           +MD +  V +++ W   ++   I GA +SD+Y G+F T+++GSIA  LGM ++T T+ +P
Sbjct: 55  HMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVP 114

Query: 121 KLRPPDCTG----AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG 176
            LRPP CT      QC      QL +L +GL LL++G+GGIR C++ F  DQFD +T +G
Sbjct: 115 NLRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEG 174

Query: 177 KSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
           +    SFF+W+Y + T+  +V++T V+Y+Q N+SW +GFAIPT   F ++++  +G   Y
Sbjct: 175 REGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYY 234

Query: 237 IIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFR 296
           +   P+GSVF  + KV+ A+ +KRK      SG   + P L   ET+ ++ KL  T++FR
Sbjct: 235 VFVKPEGSVFSGVFKVLVAAYKKRKARF--TSGIDYHQPLL---ETDLQSNKLVLTDQFR 289

Query: 297 CLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNT 356
            L+KA ++     +++D      WR C++ Q+E +K ++++ P++ + I  FLAM+QQ T
Sbjct: 290 FLNKAVIV-----MNNDEAGNEEWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQT 344

Query: 357 IGILQAIQTNKRF--GSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTM 414
             + QA++ + +F   S+ +PP  + +IS+L +  W+ FYE V V   + +T +   +++
Sbjct: 345 FTVSQALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISL 404

Query: 415 RQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAV 474
            Q++ IG + +I ++L++G VERKRR  +L        +S+  L PQ    G  + F  V
Sbjct: 405 LQKVGIGNIFSISTMLISGIVERKRRDLSLNG----VKMSVFWLTPQQVLMGFYQVFTIV 460

Query: 475 AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNK 534
            + EF   Q+P +MR++  ++ +L LS++SY++SA+V+I+H +T +  ++ WL   D++K
Sbjct: 461 GLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS-WLTD-DIDK 518

Query: 535 DTLDYFYFTIAALEVVNLLYFNFFACRFVSSN 566
             LD FY+ IAAL  +N ++F + A R+   N
Sbjct: 519 SKLDCFYYFIAALSTLNFIFFFWCARRYRYRN 550

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  362 bits (929), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 328/568 (57%), Gaps = 23/568 (4%)

Query: 1   MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
           MEN    T   + +   P   +R KGG  ++ +I+ NE FEK+AS  L+ NM +YL + Y
Sbjct: 1   MENPPDQT-ESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDY 59

Query: 61  NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
            +  +    V+ +W  +++   + GA LSD+YLGRF T++  S++S LGM ++ LTA +P
Sbjct: 60  RLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLP 119

Query: 121 KLRPPDCT---GAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTT-TPKG 176
           +++P  C    G  C      QL++LY   AL++IGSGGIRPC++AFGADQ D    PK 
Sbjct: 120 QVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKN 179

Query: 177 KSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
           +  LESFF W+Y S +VA+++A T +VYIQ ++ W +GF IP     L+  +F+     Y
Sbjct: 180 ERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLY 239

Query: 237 IIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFR 296
           + ++   S+F  +A+V+ A+  KR + L     +      L  SE ++ + KL      R
Sbjct: 240 VKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKL------R 293

Query: 297 CLDKAAVIVDSSE-LDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQN 355
            L+KA  I +  E L  DG A N WRLC+  QVE+LK LV + PVW TGI   + +  QN
Sbjct: 294 FLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINV-SQN 352

Query: 356 TIGILQAIQTNKRFGS---FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRL 412
           +  +LQA   ++R  S   F +P G  G+ +++ L +W+  Y+R  +PL+ K+ G+ +R+
Sbjct: 353 SFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRV 412

Query: 413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESP-----ISILVLVPQFSFSGL 467
            ++ R+ +G+ ++ L++ V+  VE  RR +A+  G          IS + LVPQ+   GL
Sbjct: 413 NVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGL 472

Query: 468 TEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWL 527
            E    +   EF  T+ P+SM +++ ++F L +++++ + S ++N +   +K+     W+
Sbjct: 473 AEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWI 531

Query: 528 GGTDLNKDTLDYFYFTIAALEVVNLLYF 555
              ++NK   DY+Y+ +A L  VN++Y+
Sbjct: 532 -EDNINKGHYDYYYWVLAILSFVNVIYY 558

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
224087523	585	predicted protein [Populus trichocarpa]	0.910	0.916	0.633	0.0
255540891	609	nitrate transporter, putative [Ricinus c	0.950	0.919	0.642	0.0
224138890	592	predicted protein [Populus trichocarpa]	0.977	0.972	0.624	0.0
357477393	607	Peptide transporter PTR1 [Medicago trunc	0.977	0.948	0.590	0.0
297808857	561	predicted protein [Arabidopsis lyrata su	0.940	0.987	0.579	0.0
449469667	582	PREDICTED: probable peptide/nitrate tran	0.903	0.914	0.594	0.0
356566575	582	PREDICTED: probable peptide/nitrate tran	0.972	0.984	0.571	0.0
145358511	559	major facilitator protein [Arabidopsis t	0.937	0.987	0.567	0.0
357505693	590	Peptide transporter PTR1 [Medicago trunc	0.988	0.986	0.542	0.0
359491348	581	PREDICTED: LOW QUALITY PROTEIN: probable	0.901	0.913	0.592	1e-178

>gi|224087523|ref|XP_002308184.1| predicted protein [Populus trichocarpa] gi|222854160|gb|EEE91707.1| predicted protein [Populus trichocarpa]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/540 (63%), Positives = 434/540 (80%), Gaps = 4/540 (0%)

Query: 26  GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPG 85
           GGWRS+KYILGNE+FEKLASM LIAN+TVYL+T+YNMDGI LVNV +IW GS+++T + G
Sbjct: 37  GGWRSVKYILGNESFEKLASMGLIANLTVYLQTRYNMDGIQLVNVYNIWSGSTNVTPLLG 96

Query: 86  ALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG-AQCPQPEGWQLSILY 144
           A LSD YLGRFRTLL+GS++SFLGM ++ LTA +PKLRP DC G + C +P+ WQL +LY
Sbjct: 97  AFLSDAYLGRFRTLLFGSMSSFLGMVVLALTAGMPKLRPLDCPGVSNCQKPQDWQLGVLY 156

Query: 145 AGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY 204
           +GL LLA+G+GG+RPCNIAFGADQFDT T KG++QLESFFNWWYFSFTVALV+ALTAVVY
Sbjct: 157 SGLGLLAVGAGGVRPCNIAFGADQFDTRTEKGRAQLESFFNWWYFSFTVALVIALTAVVY 216

Query: 205 IQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNL 264
           +QTNVSW++G+AI   C F SI++FLIG HTYII   QG+VFVD+AKVI A+ +KR V+L
Sbjct: 217 VQTNVSWVIGYAITAACLFSSIIIFLIGKHTYIITKSQGTVFVDIAKVIVAARKKRAVSL 276

Query: 265 GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCS 324
             +SG+ LYDPPLT  E++ +  KL HT+ F+  DKAA+I D SELDD G  KN WRLCS
Sbjct: 277 ESSSGHPLYDPPLT--ESDQRVAKLAHTDMFKFFDKAALITDPSELDDKGLPKNSWRLCS 334

Query: 325 LLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISM 384
           + QVEQLKL+V + PVW TGI CF+ MDQ NT G++QAIQ+N    +F +PPGWMGLISM
Sbjct: 335 VQQVEQLKLIVGLVPVWFTGIGCFITMDQMNTFGLMQAIQSNNEVHNFKIPPGWMGLISM 394

Query: 385 LTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSAL 444
           + LS WIF YE++++P ++K + K IR T R RI  GI+MAIL ++VA  VE+ RR +AL
Sbjct: 395 ICLSIWIFIYEQIYLPQARKRSKKNIRFTTRHRINTGIVMAILCMVVAAIVEKSRRDAAL 454

Query: 445 QHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISS 504
           + G+  SP SIL+L+PQF+ SGL E FAAVA+ME+ T  LPE+MRT+SGA+FFLS S SS
Sbjct: 455 KQGTLVSPQSILLLLPQFALSGLNEAFAAVAIMEYYTNHLPETMRTLSGAIFFLSFSASS 514

Query: 505 YINSALVNIIHGLTKKYAK-APWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFV 563
           Y+N+A++N++H +T    K +PWLGG DLNK  LDYFY+ IA+L  +NLLYFN F+CR++
Sbjct: 515 YLNTAIINLVHLVTSNNGKESPWLGGRDLNKVKLDYFYYLIASLAALNLLYFNLFSCRYL 574

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540891|ref|XP_002511510.1| nitrate transporter, putative [Ricinus communis] gi|223550625|gb|EEF52112.1| nitrate transporter, putative [Ricinus communis]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/570 (64%), Positives = 444/570 (77%), Gaps = 10/570 (1%)

Query: 22  QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLT 81
           +R  GGW +IKYILGNE+FEKLASMSLIAN+TVYL+T+YNM+G+  V V ++W GSS++T
Sbjct: 27  KRKVGGWNAIKYILGNESFEKLASMSLIANITVYLQTRYNMEGVFNVTVTTVWSGSSNIT 86

Query: 82  AIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG-AQCPQPEGWQL 140
           ++ GA+++DTYLGRFRTL +GSI S LGM  MTLTA +PKL PP C G   CPQ E WQL
Sbjct: 87  SLMGAIIADTYLGRFRTLFFGSIFSLLGMTGMTLTAGLPKLTPPRCNGDTSCPQAEKWQL 146

Query: 141 SILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALT 200
             L+A L  L+IGSGGIRPCNIAFGADQFDTTT KG+SQLESFFNWWYF FT+ALVVALT
Sbjct: 147 GFLFASLGFLSIGSGGIRPCNIAFGADQFDTTTAKGRSQLESFFNWWYFFFTIALVVALT 206

Query: 201 AVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKR 260
           AVVYIQTNVSW++GF IPT C FLSI +FLIG  TYI K P+GS+F +M KV+ A+CRKR
Sbjct: 207 AVVYIQTNVSWVIGFIIPTSCLFLSISIFLIGRSTYICKKPRGSIFTNMIKVVIAACRKR 266

Query: 261 KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGW 320
           ++     S  S YDPP+ +SE      K+ HT+RFR LDKAA+I D SELDD G AKN W
Sbjct: 267 QLTTKPDSQYSFYDPPMDESELH---LKIAHTDRFRFLDKAAMISDLSELDDQGLAKNTW 323

Query: 321 RLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG-SFNVPPGWM 379
           RLCSL QVEQLK L+A+ PVW++GI CF+ MDQQN  GILQAIQ NK  G  F VPPGWM
Sbjct: 324 RLCSLQQVEQLKCLIAIGPVWVSGIACFIPMDQQNAFGILQAIQINKSVGPKFQVPPGWM 383

Query: 380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR 439
           GL SM+ LS WI+ YER++VP ++K+ GK  RLTM QRI  GI+M+IL +LVAGFVE+KR
Sbjct: 384 GLTSMIALSIWIYIYERIYVPKAKKLAGKDKRLTMPQRIKTGIVMSILCMLVAGFVEKKR 443

Query: 440 RLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLS 499
           R SAL++G+F SPI+I  L+PQF  SGL E FAAVA+MEF TT +PESMRTV+GAVFFLS
Sbjct: 444 RESALRNGTFASPITIAALLPQFVLSGLIEAFAAVAIMEFYTTGMPESMRTVAGAVFFLS 503

Query: 500 LSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA 559
           LSISSYI+S L+NIIH ++ K  K PWLGG DLN++ LDY+YF IA L VVN +YFNF+A
Sbjct: 504 LSISSYISSLLINIIHHVSGKNGKTPWLGGHDLNQNRLDYYYFIIAGLAVVNFIYFNFYA 563

Query: 560 CRFVSSNAIGKKESQSEEKSQNKESAYQHA 589
            R+  S+     +  +E K +N  S + H+
Sbjct: 564 SRYAVSH---HYDGSTEVKVEN--SNFHHS 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138890|ref|XP_002322927.1| predicted protein [Populus trichocarpa] gi|222867557|gb|EEF04688.1| predicted protein [Populus trichocarpa]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/586 (62%), Positives = 455/586 (77%), Gaps = 10/586 (1%)

Query: 1   MEN---EIHSTLVDQNSRSPPPDS----QRPKGGWRSIKYILGNETFEKLASMSLIANMT 53
           MEN   +  S+  D +    PP+S    ++  GGWRS+KYILGNE+FEKLASM LIAN+T
Sbjct: 1   MENVLTKTSSSSADSDITRAPPNSLLPPKKEAGGWRSVKYILGNESFEKLASMGLIANLT 60

Query: 54  VYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIM 113
           VYL+T++NMDGI LVNV +IW GS+++T + GA LSDTYLGRFRTL+ GS ASFLGM +M
Sbjct: 61  VYLQTRFNMDGIQLVNVFNIWSGSTNVTPLLGAFLSDTYLGRFRTLICGSTASFLGMVVM 120

Query: 114 TLTASIPKLRPPDCTG-AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTT 172
           +L A IP LRP  CTG + C +PE WQL +LY GL LLAIG+GG+RPCNIAFGADQFDT 
Sbjct: 121 SLIAGIPNLRPLHCTGGSNCQKPEFWQLGVLYLGLGLLAIGAGGVRPCNIAFGADQFDTR 180

Query: 173 TPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG 232
           T KG++QLESFFNWWYFSFTV+LV+ALT VVY+QTNVSW++G+ IP  C F SIV+FLIG
Sbjct: 181 TEKGRAQLESFFNWWYFSFTVSLVIALTVVVYVQTNVSWVIGYGIPAACLFFSIVIFLIG 240

Query: 233 YHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHT 292
            HTYII  PQGSVFVDMAKVI A+C+KR ++L     NS YDPP    E++ + TKL HT
Sbjct: 241 KHTYIITKPQGSVFVDMAKVIVAACKKRAMSLESTPENSFYDPPWI--ESDQRVTKLAHT 298

Query: 293 NRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMD 352
           N F+  DKAA+I D SELDD G  KN WRLCS+ QVEQLKL+V + PVWITGI CF+ MD
Sbjct: 299 NMFKFFDKAALIADPSELDDKGLPKNSWRLCSVQQVEQLKLVVGLVPVWITGIGCFITMD 358

Query: 353 QQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRL 412
           Q NT G++QAIQ+N +  +F +PPGWMGL SM+ LSTWIF YE++++P ++K + K +RL
Sbjct: 359 QMNTFGLMQAIQSNNKIHNFKIPPGWMGLSSMICLSTWIFIYEQIYLPFAKKRSKKNVRL 418

Query: 413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFA 472
           TMRQRI  GI+MAIL ++VAG VE+ RR +AL+ GS  SP SIL+L+PQFS SGL EGFA
Sbjct: 419 TMRQRINTGIVMAILCMVVAGIVEKNRRETALKQGSLLSPQSILLLLPQFSLSGLNEGFA 478

Query: 473 AVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDL 532
           AVAVME+ T  LPESMRT++GA+FFLS S SSY+N+ +VN++H +T K  K PWLGG DL
Sbjct: 479 AVAVMEYYTNHLPESMRTLAGAIFFLSFSASSYLNTVIVNVVHHVTAKLGKTPWLGGRDL 538

Query: 533 NKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEK 578
           NK  LD FY+ IA L ++NLLYFN F+CR++  NA  +  S+ E+K
Sbjct: 539 NKVKLDNFYYLIAGLALLNLLYFNLFSCRYLEKNADKRPGSRHEDK 584

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477393|ref|XP_003608982.1| Peptide transporter PTR1 [Medicago truncatula] gi|355510037|gb|AES91179.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/594 (59%), Positives = 434/594 (73%), Gaps = 18/594 (3%)

Query: 3   NEIHSTLVDQNSRSPPPD-SQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN 61
           N   STL  ++   P  + S R  GGWRS+KYI+GNE+FEKLASMSLI+N+TVYL T YN
Sbjct: 9   NSSPSTLDLEHEAIPSNEASSREAGGWRSVKYIIGNESFEKLASMSLISNLTVYLLTNYN 68

Query: 62  MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPK 121
           M GI +VNVV IW GSS++ ++ GA +SDTYLGRFRTLLYG IAS LG+  +TLTA + +
Sbjct: 69  MSGIFVVNVVQIWNGSSNIASLVGAFISDTYLGRFRTLLYGCIASLLGIMTITLTAGLHQ 128

Query: 122 LRPPDCTG---AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS 178
           LRP  C       C  P+ WQL +L+ GL LL+IG+GGIRPCNIAFGADQFDT T KG+ 
Sbjct: 129 LRPITCDDNDRPNCQHPKDWQLGVLFTGLGLLSIGAGGIRPCNIAFGADQFDTNTAKGRG 188

Query: 179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYII 238
           QLESFFNWWYF+FT+ALV+ LT VVYIQTNVSW LGFAIPT C   SI++FL G  TYI 
Sbjct: 189 QLESFFNWWYFTFTIALVIVLTGVVYIQTNVSWTLGFAIPTVCLAFSIIIFLFGRGTYIY 248

Query: 239 KNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCL 298
           K PQGSVF DMAKVI A+CRKRK+   Q S  +LYD   T SE+E+   +L  T+RF+ L
Sbjct: 249 KKPQGSVFTDMAKVIVAACRKRKL---QLSNRTLYDHVSTLSESEN--IRLVQTDRFKFL 303

Query: 299 DKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIG 358
           DKAA+I + SEL++ G AKNGWRLCSL QVE LK L  + PVW+TGI CF+ MDQQ+T G
Sbjct: 304 DKAAIIAEPSELNNQGIAKNGWRLCSLQQVEHLKCLFGILPVWVTGICCFIVMDQQSTFG 363

Query: 359 ILQAIQTNKRFGS-FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKI-RLTMRQ 416
           +LQ IQT++  GS F VPPGWM LISM +LS WI  YE +++P+ + +  +   R++M  
Sbjct: 364 VLQVIQTDRSIGSHFKVPPGWMNLISMTSLSFWICIYECIYLPIMRIINKRATRRMSMGC 423

Query: 417 RITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAV 476
           RI IGIL++IL +LVA  VE+KRR SAL+H SF SP+S  +L+PQF+ SGL E FAAVA+
Sbjct: 424 RIRIGILLSILCMLVAAVVEKKRRDSALKHNSFISPVSFGLLLPQFALSGLNEAFAAVAI 483

Query: 477 MEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDT 536
           MEF T Q+PESMRTVSGA+FFLSLSI++Y  S +VNI+H  T    K PWLGG DLN   
Sbjct: 484 MEFFTLQVPESMRTVSGAIFFLSLSIANYTGSLIVNIVHKATSHKGKTPWLGGQDLNHTR 543

Query: 537 LDYFYFTIAALEVVNLLYFNFFACRF-VSSNAIGKKESQ------SEEKSQNKE 583
           LDY+Y+ IA++ V+N +YFNFFAC + +S   I K E Q       E   Q+ E
Sbjct: 544 LDYYYYLIASIGVLNFIYFNFFACHYLISGKEIEKAEVQPIASVKGESDEQDDE 597

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808857|ref|XP_002872312.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318149|gb|EFH48571.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/566 (57%), Positives = 427/566 (75%), Gaps = 12/566 (2%)

Query: 10  VDQNSRSPPPDS--QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILL 67
           +D  S SP   +  ++ KGGWR+IKYI+ NE+FEKLASMSLI N++VYL TKYN+ G+ L
Sbjct: 1   MDVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLTTKYNLGGVFL 60

Query: 68  VNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC 127
           VNV++IW GS ++  + GA +SD YLGRF TLL GSIASF+GMGI+ LTA++P+LRP  C
Sbjct: 61  VNVINIWFGSCNVLTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIIALTAALPRLRPEAC 120

Query: 128 TG-AQCP-QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN 185
              + C  QP  WQL +L++GL LLAIG+GGIRPCNIAFGADQFDT+T KGK+QLE+FFN
Sbjct: 121 IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGIRPCNIAFGADQFDTSTKKGKAQLETFFN 180

Query: 186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSV 245
           WWYFSFTVALV+ALT VVYIQTN+SW++GF IPT C  LSI  FLIG HTYI   P+GSV
Sbjct: 181 WWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFLIGQHTYICAKPEGSV 240

Query: 246 FVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIV 305
           F D+ KV+ A+C+KRK+  G  S    Y  P   S   S TT +    R R  DKA+V+ 
Sbjct: 241 FADIVKVVAAACKKRKLKSG--SDIMFYIGP---SNDGSPTTLVRDKQRLRFFDKASVVT 295

Query: 306 DSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQT 365
           + +EL+++G AK  WRLCS+ QV+ LK + A+ PVW+TGI CF+  DQQN  GILQA+Q 
Sbjct: 296 NPNELNEEGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355

Query: 366 NKRFG--SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL 423
           +K FG  +F VP GWM L+SM+TL+ WI  YE V +P+ +++TG+K RLTM+QRI IGI+
Sbjct: 356 DKTFGRHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTMKQRIEIGIV 415

Query: 424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ 483
           M I  ++VA F E+KRR SAL++GSF SPISI++L+PQF+ +GLTE F+AVA+MEFLT +
Sbjct: 416 MGIACMIVAAFQEKKRRASALKNGSFVSPISIVMLLPQFALAGLTEAFSAVALMEFLTVR 475

Query: 484 LPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFT 543
           +PE MR V+GA+FFLS SI+SYI + L+N+I  +T+K  K+ WLG  DLNK+ L+ ++F 
Sbjct: 476 MPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFFI 534

Query: 544 IAALEVVNLLYFNFFACRFVSSNAIG 569
           IA ++V NLLYF F+A RF + N  G
Sbjct: 535 IAGIQVANLLYFKFYASRFATDNKKG 560

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469667|ref|XP_004152540.1| PREDICTED: probable peptide/nitrate transporter At5g28470-like [Cucumis sativus]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/543 (59%), Positives = 417/543 (76%), Gaps = 11/543 (2%)

Query: 26  GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPG 85
           GGWR++KYI+GNE+FEKL+SMSLI+N+TVYL T+YN++G  +VNVV+IW G+S++  + G
Sbjct: 21  GGWRAVKYIIGNESFEKLSSMSLISNITVYLSTQYNVNGTFVVNVVNIWIGTSNIATLAG 80

Query: 86  ALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG---AQCPQPEGWQLSI 142
           A ++DT LGR+RTLLYGSIASFLGMG + LTA++ +LRPP C       CPQP  WQL +
Sbjct: 81  AFIADTRLGRYRTLLYGSIASFLGMGTVALTAALHQLRPPHCNADDSGHCPQPHLWQLLV 140

Query: 143 LYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV 202
           L+ GL LL+IG+GGIRPCN+AFGADQFDTTT KGKSQLESFFNWWY SFT+AL++ALT V
Sbjct: 141 LFTGLGLLSIGAGGIRPCNVAFGADQFDTTTEKGKSQLESFFNWWYLSFTIALLIALTGV 200

Query: 203 VYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKV 262
           VY+QTNVSW LGFAIPT CFF+SI +FL+G HTYII  P+GS+  D+A+VI A+ RKR  
Sbjct: 201 VYVQTNVSWTLGFAIPTICFFISISIFLLGRHTYIIVKPRGSMLTDVARVIVAAYRKRG- 259

Query: 263 NLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVD-SSELDDDGKAKNGWR 321
                S +S YD P+   E  +   KL HT+RF+ LD+AA+IV+   ELD+ GK KN WR
Sbjct: 260 --HSISSSSFYDSPM---EDSTCGEKLIHTDRFKWLDRAAIIVNPEEELDEQGKPKNSWR 314

Query: 322 LCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG-SFNVPPGWMG 380
           LCSL QVE  K LV++ PVWI+GI CF+  +Q NT GILQAIQ+N+  G  F  PPGWM 
Sbjct: 315 LCSLQQVEGFKCLVSIIPVWISGIGCFIVFNQPNTFGILQAIQSNRSIGPHFKFPPGWMS 374

Query: 381 LISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRR 440
           L  M+ LS WI  YERV + L +K+TGK+ RLTM QRITIGIL++I S++ +G VE+ RR
Sbjct: 375 LAGMIALSIWIIIYERVLIKLGKKITGKERRLTMEQRITIGILLSIFSMITSGVVEKHRR 434

Query: 441 LSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSL 500
            +AL++  F SP S  +L+PQ   +GL E FA VA+MEF T  +PE MRTV+GA+FFL++
Sbjct: 435 DAALKNRLFISPTSFALLLPQHVLTGLMEAFALVAIMEFFTMHMPEHMRTVAGAIFFLTI 494

Query: 501 SISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFAC 560
           S++SY++S +V +I  ++ K AK+PW+GG DLN++ LDY+YFT+A LE +NLLYF  FA 
Sbjct: 495 SVASYLSSLIVYVIKKVSAKIAKSPWVGGHDLNQNRLDYYYFTLAVLETLNLLYFVIFAR 554

Query: 561 RFV 563
           RFV
Sbjct: 555 RFV 557

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566575|ref|XP_003551506.1| PREDICTED: probable peptide/nitrate transporter At5g28470-like [Glycine max]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/586 (57%), Positives = 424/586 (72%), Gaps = 13/586 (2%)

Query: 1   MENEIHSTLVDQNSRS--PPPDSQRPK-GGWRSIKYILGNETFEKLASMSLIANMTVYLR 57
           M NE HS+   QN     P   S R K GGWR+++YILGNETFEKLASMSLIAN+ +YLR
Sbjct: 1   MVNENHSS-ESQNHLPYLPHSSSARKKLGGWRAVRYILGNETFEKLASMSLIANLVLYLR 59

Query: 58  TKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTA 117
           T+YNMD  + V V +IW GS++   + GA L+D Y+G+F  LL GSIASFLGM  M L A
Sbjct: 60  TQYNMDTTVSVEVFNIWAGSANFLPLVGAYLADAYMGKFNMLLIGSIASFLGMVFMALGA 119

Query: 118 SIPKLRPPDC-TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG 176
            IP LRPP C T + C +P G QL+ILY+GLAL AIGSGG+RPCNIAFGADQFDT T KG
Sbjct: 120 GIPSLRPPSCPTQSNCIEPTGSQLAILYSGLALFAIGSGGLRPCNIAFGADQFDTKTEKG 179

Query: 177 KSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
           ++QLESF NWWYF FTVAL+VALT VVYIQTN+SW LGF IPT CF  S+ +FL G +TY
Sbjct: 180 RAQLESFCNWWYFLFTVALLVALTVVVYIQTNISWFLGFVIPTVCFAFSLTIFLWGLNTY 239

Query: 237 IIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFR 296
           +   P+GS+  D+ KV  A+ RKR V L   S  S +DPPL  SE+E   TKL HTNRFR
Sbjct: 240 VRSKPKGSIITDLVKVAVAAGRKRHVKLD--SELSFHDPPLA-SESEQSLTKLAHTNRFR 296

Query: 297 CLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNT 356
             DKAAV+ D SE D + K  + WRLCS+ QVE+LK ++A  PVW+ GI CF +M Q ++
Sbjct: 297 YFDKAAVVTDPSERDSNEKTVDSWRLCSVQQVEELKSILATLPVWLAGIICFFSMGQASS 356

Query: 357 IGILQAIQTNKRFG-SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMR 415
            GILQA+QTNK  G +F+VPP WMGL+ M+ LS WIF YE+++VP + K T +  RL++ 
Sbjct: 357 FGILQALQTNKSIGPNFSVPPAWMGLVPMIALSLWIFLYEKIYVPWTMKATKRGKRLSIE 416

Query: 416 QRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVA 475
            RI IGIL +I  ++V+G VE  RR  AL+HGSFESP SI  LVPQF+ SGL E FAA+ 
Sbjct: 417 NRILIGILFSIACMVVSGLVEVHRRDDALKHGSFESPSSIWWLVPQFALSGLVEAFAAIP 476

Query: 476 VMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKD 535
           +ME LT+  PESM+T+ GA FFLSLSI++Y+N+ LV I+  +T+  ++ PWLGG DLNK+
Sbjct: 477 MMELLTSYWPESMKTLGGATFFLSLSIANYLNTILVRIVVAVTRN-SRRPWLGGNDLNKN 535

Query: 536 TLDYFYFTIAALEVVNLLYFNFFACRFVSSNAI---GKKESQSEEK 578
            L+Y+Y+TIA L  +NLLYF FFA  ++ +  +   G+ E++ EEK
Sbjct: 536 RLEYYYYTIAVLGGLNLLYFQFFARHYLHTEMLQRPGRNEAEDEEK 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358511|ref|NP_198199.2| major facilitator protein [Arabidopsis thaliana] gi|310947328|sp|Q3E8X3.2|PTR52_ARATH RecName: Full=Probable peptide/nitrate transporter At5g28470 gi|91806916|gb|ABE66185.1| proton-dependent oligopeptide transport family protein [Arabidopsis thaliana] gi|332006421|gb|AED93804.1| major facilitator protein [Arabidopsis thaliana]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/566 (56%), Positives = 424/566 (74%), Gaps = 14/566 (2%)

Query: 10  VDQNSRSPPPDS--QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILL 67
           +D  S SP   +  ++ KGGWR+IKYI+ NE+FEKLASMSLI N++VYL TKYN+ G+ L
Sbjct: 1   MDVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFL 60

Query: 68  VNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC 127
           VNV++IW GS ++  + GA +SD YLGRF TLL GSIASF+GMGI  LTA++P LRP  C
Sbjct: 61  VNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC 120

Query: 128 TG-AQCP-QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN 185
              + C  QP  WQL +L++GL LLAIG+GG+RPCNIAFGADQFDT+T KGK+ LE+FFN
Sbjct: 121 IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFN 180

Query: 186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSV 245
           WWYFSFTVALV+ALT VVYIQTN+SW++GF IPT C  LSI  F+IG HTYI    +GSV
Sbjct: 181 WWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSV 240

Query: 246 FVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIV 305
           F D+ KV+TA+C+KRKV  G  S  + Y  P   S   S TT +   +R R  DKA+++ 
Sbjct: 241 FADIVKVVTAACKKRKVKPG--SDITFYIGP---SNDGSPTTLVRDKHRLRFFDKASIVT 295

Query: 306 DSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQT 365
           + +EL++DG AK  WRLCS+ QV+ LK + A+ PVW+TGI CF+  DQQN  GILQA+Q 
Sbjct: 296 NPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355

Query: 366 NKRFG--SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL 423
           +K FG  +F VP GWM L+SM+TL+ WI  YE V +P+ +++TG+K RLT++ RI   I+
Sbjct: 356 DKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIE--IV 413

Query: 424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ 483
           M I+ ++VAGF E+KRR SAL++GSF SP+SI++L+PQF+ +GLTE F+AVA+MEFLT +
Sbjct: 414 MGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVR 473

Query: 484 LPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFT 543
           +PE MR V+GA+FFLS SI+SYI + L+N+I  +T+K  K+ WLG  DLNK+ L+ ++F 
Sbjct: 474 MPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFFI 532

Query: 544 IAALEVVNLLYFNFFACRFVSSNAIG 569
           IA ++V NLLYF  FA R+ + N  G
Sbjct: 533 IAGIQVANLLYFRLFASRYATENKKG 558

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505693|ref|XP_003623135.1| Peptide transporter PTR1 [Medicago truncatula] gi|355498150|gb|AES79353.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/586 (54%), Positives = 422/586 (72%), Gaps = 4/586 (0%)

Query: 2   ENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN 61
           ENE        ++ S    ++  KGGW+S+KYILGNETFEKLASMSLIAN+ VY+ T+YN
Sbjct: 4   ENESDERQDPLSNFSHSSSTKNKKGGWKSVKYILGNETFEKLASMSLIANLVVYMHTQYN 63

Query: 62  MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPK 121
           MD  L V V +IW G  +   +  A L+D Y+G+F  L++GSIAS LGMG M+L+A    
Sbjct: 64  MDTTLSVEVFNIWAGLVNFIPLVAAYLADAYVGKFHMLIFGSIASLLGMGFMSLSAGHSS 123

Query: 122 LRPPDC-TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL 180
           LRPP C T + C +P G QLSILY GL   AIGSG +RPCNIAFGADQFDT T KGK+QL
Sbjct: 124 LRPPSCPTLSDCIKPTGVQLSILYLGLGFFAIGSGSLRPCNIAFGADQFDTKTAKGKAQL 183

Query: 181 ESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKN 240
           ESF NWWYF FTVAL++ALT VVYIQTNVSW +GF IPTGCF +S+ +FL+G  TYI   
Sbjct: 184 ESFCNWWYFLFTVALLIALTGVVYIQTNVSWFIGFIIPTGCFVVSLTIFLLGQCTYIKLK 243

Query: 241 PQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETE-SKTTKLPHTNRFRCLD 299
           P+GSV  D+ KV+ AS RK  +++ + S  S YDP L  +E+E S+  KL HTNRFR  D
Sbjct: 244 PKGSVLCDLVKVVVASIRKHHIDIKKDSELSFYDPQLASNESEDSRNVKLSHTNRFRYFD 303

Query: 300 KAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGI 359
           KAAVI + +E+D +G + + WRLCSL QVE+LK +++  P+W+ GI CF++M Q N+ GI
Sbjct: 304 KAAVITNQNEIDSNGNSIDNWRLCSLQQVEELKAILSTLPIWLAGIGCFISMGQANSYGI 363

Query: 360 LQAIQTNKRFGS-FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRI 418
           LQ +Q ++  G+ F +PP WMGL+ M+ LS+WI  YE+ ++P ++  T K  RLT+ QRI
Sbjct: 364 LQGLQIDRSIGTKFIIPPAWMGLVPMIFLSSWIILYEKFYIPFTKTATSKGKRLTIEQRI 423

Query: 419 TIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVME 478
           TIGI+ +IL ++V+G VE +RR +AL+HG+F+SP  I  L+PQF  SGL E FAA+ +ME
Sbjct: 424 TIGIICSILGMVVSGLVEVRRRDNALKHGTFQSPTRIWWLIPQFGLSGLVEAFAAIPMME 483

Query: 479 FLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLD 538
            LT+  P+SM+T+ GAVFFLSLSI+S+ ++ L+ II  LTK      WLGG DLNK+ LD
Sbjct: 484 LLTSYWPDSMKTLGGAVFFLSLSIASWSSNVLIKIIVALTKGNGGPHWLGGNDLNKNRLD 543

Query: 539 YFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNKES 584
           ++Y+TIAA  V+NLLYF FFA RF++S  + +++ QSEE+    E+
Sbjct: 544 HYYYTIAAFGVLNLLYFVFFARRFLNSEVL-QRQIQSEERDLEHEN 588

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491348|ref|XP_003634269.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At5g28470-like [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/538 (59%), Positives = 411/538 (76%), Gaps = 7/538 (1%)

Query: 22  QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLT 81
           Q+  GGW+S+KYIL +E+FEK AS S IAN+TVYLRTKYNMDGI+LVNV+S W GSS+++
Sbjct: 25  QKTPGGWKSVKYILAHESFEKSASTSSIANLTVYLRTKYNMDGIILVNVISXWSGSSNIS 84

Query: 82  AIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ-CPQPEGWQL 140
           ++ GA +SD YLGRF TLL GS+ SFLGMG M LTA + ++RP  C G + CPQP  WQL
Sbjct: 85  SLAGAFVSDAYLGRFHTLLLGSMVSFLGMGTMNLTAGVTEVRPFPCNGQRNCPQPYAWQL 144

Query: 141 SILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALT 200
            +LY  L LLAIG+GGIR C+IAFGADQFD TT KG++ L+SFF+WWYFSF +ALVVAL+
Sbjct: 145 VLLYGVLGLLAIGAGGIRTCSIAFGADQFDPTTEKGRAXLQSFFDWWYFSFILALVVALS 204

Query: 201 AVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKR 260
            VVYIQTNVSW+LGFAIPT C  +SI++FL+G HT I     GS+FVDM KV+ A+  K 
Sbjct: 205 VVVYIQTNVSWVLGFAIPTACLSISIIIFLLGRHTCICMKVXGSIFVDMVKVVAAAGSKH 264

Query: 261 KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGW 320
           + +L     ++ YDPP   ++    T+KL  TNRF+ LDKA + VD SELD  GKAK+GW
Sbjct: 265 RASLD--CEHTFYDPP--SNKAGPWTSKLARTNRFKHLDKATLSVDPSELDTHGKAKDGW 320

Query: 321 RLCSLL-QVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWM 379
            LCS++ QVE+LK L+A+FPVWI+G+ CF+ MDQ NT GILQAIQTN+  G F +P  W+
Sbjct: 321 SLCSVIEQVEELKCLLAIFPVWISGVTCFVVMDQHNTFGILQAIQTNRSIGRFEIPLDWL 380

Query: 380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR 439
           G+ SM++LS WI  YE++++P ++   GK +RL ++QRI IGILM IL +L+AG  E +R
Sbjct: 381 GMASMISLSIWITMYEQIYIPQARNFXGKGLRLRLQQRIAIGILMPILCMLLAGIGEGRR 440

Query: 440 RLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLS 499
           R SAL+ GSF  P S+ +L+PQF  SGLTE FAAVAVME+ TTQ+P+SMRTV+GA+F LS
Sbjct: 441 RHSALRDGSFTLPTSVAILLPQFILSGLTEAFAAVAVMEYFTTQMPDSMRTVAGAIFHLS 500

Query: 500 LSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNF 557
           LSI+SY++S LVN+IH +T     +PWLGG DLNK+ LDY++  IA LE V +LY +F
Sbjct: 501 LSITSYLSSLLVNVIHAITGSRGWSPWLGGHDLNKNRLDYYFHMIAILETV-ILYTSF 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	589
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.937	0.987	0.530	1.1e-158
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.904	0.859	0.403	1.6e-111
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.896	0.916	0.383	2.3e-101
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.884	0.845	0.366	1.2e-95
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.884	0.887	0.364	4.2e-95
TAIR|locus:2196734	555	AT1G69860 [Arabidopsis thalian	0.916	0.972	0.346	1.1e-92
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.899	0.889	0.364	8.1e-92
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.923	0.896	0.319	3.8e-85
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.933	0.940	0.339	3.8e-85
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.925	0.922	0.325	5.8e-82

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
 Identities = 300/566 (53%), Positives = 397/566 (70%)

Query:    10 VDQNSRSPPPDS--QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILL 67
             +D  S SP   +  ++ KGGWR+IKYI+ NE+FEKLASMSLI N++VYL TKYN+ G+ L
Sbjct:     1 MDVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFL 60

Query:    68 VNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC 127
             VNV++IW GS ++  + GA +SD YLGRF TLL GSIASF+GMGI  LTA++P LRP  C
Sbjct:    61 VNVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC 120

Query:   128 TG-AQCP-QPEGWQXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFN 185
                + C  QP  WQ                  RPCNIAFGADQFDT+T KGK+ LE+FFN
Sbjct:   121 IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFN 180

Query:   186 WWYFSFXXXXXXXXXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSV 245
             WWYFSF            YIQTN+SW++GF IPT C  LSI  F+IG HTYI    +GSV
Sbjct:   181 WWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSV 240

Query:   246 FVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIV 305
             F D+ KV+TA+C+KRKV  G  S  + Y  P   S   S TT +   +R R  DKA+++ 
Sbjct:   241 FADIVKVVTAACKKRKVKPG--SDITFYIGP---SNDGSPTTLVRDKHRLRFFDKASIVT 295

Query:   306 DSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQT 365
             + +EL++DG AK  WRLCS+ QV+ LK + A+ PVW+TGI CF+  DQQN  GILQA+Q 
Sbjct:   296 NPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQM 355

Query:   366 NKRFG--SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL 423
             +K FG  +F VP GWM L+SM+TL+ WI  YE V +P+ +++TG+K RLT++ RI I  +
Sbjct:   356 DKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--V 413

Query:   424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ 483
             M I+ ++VAGF E+KRR SAL++GSF SP+SI++L+PQF+ +GLTE F+AVA+MEFLT +
Sbjct:   414 MGIICMIVAGFQEKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVR 473

Query:   484 LPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFT 543
             +PE MR V+GA+FFLS SI+SYI + L+N+I  +T+K  K+ WLG  DLNK+ L+ ++F 
Sbjct:   474 MPEHMRAVAGAIFFLSSSIASYICTLLINVIDAVTRKEGKS-WLGDKDLNKNRLENYFFI 532

Query:   544 IAALEVVNLLYFNFFACRFVSSNAIG 569
             IA ++V NLLYF  FA R+ + N  G
Sbjct:   533 IAGIQVANLLYFRLFASRYATENKKG 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 220/545 (40%), Positives = 331/545 (60%)

Query:    22 QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLT 81
             ++  GGWR++ +ILGNET E+L S+ L+AN  VYL   ++++ +   NV++IW G ++LT
Sbjct:    49 EKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLT 108

Query:    82 AIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ---CPQPEGW 138
              + GA +SDTY+GRF+T+ + S A+ LG+  +TLTAS P+L P  C       C  P   
Sbjct:   109 PLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKL 168

Query:   139 QXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFXXXXXXX 198
             Q                  RPC+I FG DQFD  T +G   + SFFNW+Y +F       
Sbjct:   169 QIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIIT 228

Query:   199 XXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCR 258
                  YIQ  VSWI+GF+IPTG   L++V+F  G   Y+   P+GS+F  +A+VI A+ +
Sbjct:   229 QTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARK 288

Query:   259 KRKVNL-GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAK 317
             KRK+ L  +  G   Y  P  +S   S  +KL  +N+FRCLDKAAV+++  +L  +G   
Sbjct:   289 KRKLKLPAEDDGTVTYYDPAIKS---SVLSKLHRSNQFRCLDKAAVVIEG-DLTPEGPPA 344

Query:   318 NGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG-SFNVPP 376
             + WRLCS+ +VE++K L+ + P+W  GI    AM  Q T  + QA++ ++  G  F +P 
Sbjct:   345 DKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPA 404

Query:   377 GWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVE 436
             G + +IS+LT+  ++ FY+RVFVP  +++TG K  +T+ QRI  GI+ AI S++VAG VE
Sbjct:   405 GSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVE 464

Query:   437 RKRRLSALQHG--SFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGA 494
             R RR+ ++  G  +  +P+S+  L PQ    GL E F  +  +EF  +Q PE MR+++ +
Sbjct:   465 RMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANS 524

Query:   495 VFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLY 554
             +F LS + SSY++S LV ++H  +  + +  WL   +LN   LDYFY+ IA L VVNL+Y
Sbjct:   525 LFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLN-KNLNAGKLDYFYYLIAVLGVVNLVY 583

Query:   555 FNFFA 559
             F + A
Sbjct:   584 FWYCA 588

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 210/547 (38%), Positives = 317/547 (57%)

Query:    22 QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLT 81
             ++  GGWR+I +ILGNET EKL S+ + AN  +YLR  ++M+ +   NV  +W G ++  
Sbjct:    12 EKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFA 71

Query:    82 AIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGA---QCPQPEGW 138
              + GAL+SD Y+GRF+T+ Y S+ S LG+  +TLTA +P+L PP C      +C  P   
Sbjct:    72 PLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKL 131

Query:   139 QXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFXXXXXXX 198
             Q                  RPC+I FG DQFD  T +G   + SFFNW+Y +        
Sbjct:   132 QLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFS 191

Query:   199 XXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCR 258
                  Y+QT VSW++GF+IPT     ++V+F +G   Y+   P+GSVF  +A+VI A+ +
Sbjct:   192 HTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARK 250

Query:   259 KR--KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKA 316
             KR  K++L        Y+PP+         +KLP T++F+ LDKAAVI+D  +L  +G  
Sbjct:   251 KRDLKISLVDDGTEEYYEPPVKPGVL----SKLPLTDQFKFLDKAAVILDG-DLTSEGVP 305

Query:   317 KNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS-FNVP 375
              N WRLCS+ +VE++K L+ + PVW  GI   +AM  Q T  + QA + ++  G  F +P
Sbjct:   306 ANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIP 365

Query:   376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFV 435
                + +IS +T+  W+  YE + VP   +M  +K R+T+ QR+ IGI+ AILS+  AGFV
Sbjct:   366 AASITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSMFTAGFV 423

Query:   436 ERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV 495
             E  RR  A +     + +S+  L       GL E F  + ++EF  +Q PE MR+++ ++
Sbjct:   424 EGVRRTRATEM----TQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSL 479

Query:   496 FFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYF 555
             F LS + ++Y++S LV  +H ++       WL   DL++  LDYFY+ IA L VVNL+YF
Sbjct:   480 FPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLN-KDLDRGKLDYFYYLIAVLGVVNLVYF 538

Query:   556 NFFACRF 562
              + A R+
Sbjct:   539 WYCAHRY 545

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 200/545 (36%), Positives = 304/545 (55%)

Query:    27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA 86
             GW+ + +I+GNETFEKL  +  ++N+ VYL   +N+  I    +++ + G+ +      A
Sbjct:    46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105

Query:    87 LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC-TGAQ--CPQPEGWQXXXX 143
              L DTY GR++TL    IA FLG  ++ LTA++P+L P  C T A   C  P G Q    
Sbjct:   106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165

Query:   144 XXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFXXXXXXXXXXXX 203
                           RPCN+AFGADQF+  +  GK  ++SFFNW++F+F            
Sbjct:   166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVV 225

Query:   204 YIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN 263
             Y+Q+NVSW +G  IP    FL+ ++F  G   Y+     GS    +A+VI  + +KR + 
Sbjct:   226 YVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLK 285

Query:   264 LGQASGNSLYD--PPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWR 321
               +    +LY+  PP      +   +KL +T++FR LDKAA++    +L  DGK  + W+
Sbjct:   286 PAKQPWLNLYNYYPP------KYANSKLKYTDQFRFLDKAAILTPEDKLQPDGKPADPWK 339

Query:   322 LCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS--FNVPPGWM 379
             LC++ QVE++K +V + P+W      +L + QQ T  + QA+Q+++R GS  F +P    
Sbjct:   340 LCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATY 399

Query:   380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR 439
              +  M  ++ +I  Y+RV VP  +++TG    +T+ QRI  GI  A  SL+VAGFVE +R
Sbjct:   400 VVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERR 459

Query:   440 RLSAL---------QHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRT 490
             R  AL         + G   S +S + L+PQ S +G+ E FAA+  MEF   Q PE+MR+
Sbjct:   460 RTFALTKPTLGMAPRKGEISS-MSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRS 518

Query:   491 VSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVV 550
              +G++F++   +SSY+ S L+  +H  T+  +   WL   DLNK  LD FYF IA +  V
Sbjct:   519 FAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLA-EDLNKGRLDLFYFMIAGILAV 577

Query:   551 NLLYF 555
             N  YF
Sbjct:   578 NFAYF 582

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 198/543 (36%), Positives = 304/543 (55%)

Query:    27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA 86
             GW+ + +I+GNETFEKL  +   +N+ +YL T +NM  I    VV+I+GG+S+   I  A
Sbjct:    22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81

Query:    87 LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT---GAQCPQPEGWQXXXX 143
              L D+Y GR++TL +  IA FLG   M LTA I  L P  C    G+ C  P   Q    
Sbjct:    82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141

Query:   144 XXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFXXXXXXXXXXXX 203
                           RPCN+ FGADQFD  T +GK  +ESFFNW++F+F            
Sbjct:   142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIV 201

Query:   204 YIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN 263
             Y+Q+NVSW +G AIP     L  ++F  G   Y+     GS    + +VI  + +KR+  
Sbjct:   202 YVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR-- 259

Query:   264 LGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLC 323
             L     N LY+       ++ K +KL HT +FR LDK+A+     +L+ DG   + W+LC
Sbjct:   260 LKPVGPNELYN----YIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLC 315

Query:   324 SLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG--SFNVPPGWMGL 381
             S+ QVE++K ++ + PVW++    +LA  QQ T  I Q++Q+++R G  SF +P G   +
Sbjct:   316 SMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTV 375

Query:   382 ISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRL 441
               ML ++ +I  Y+RV VP  +K TG+   +T  QR+  G+ + I S++V+  VE+ RR 
Sbjct:   376 FLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRK 435

Query:   442 SAL---------QHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVS 492
              AL         + G+  S +S + L+PQ    G+ +  A V  MEF   Q PE+MR+ +
Sbjct:   436 VALTKPTLGLAPRKGAISS-MSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFA 494

Query:   493 GAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNL 552
             G++++  + ++SY+++ L++ +H  T+ ++   WL   DLNK  L+YFYF +A +  +NL
Sbjct:   495 GSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLP-EDLNKGRLEYFYFLVAGMMTLNL 553

Query:   553 LYF 555
              YF
Sbjct:   554 AYF 556

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 197/568 (34%), Positives = 333/568 (58%)

Query:     1 MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
             M+NE  ++  D  +R      QR   GW+++ YI+GNET E+LA+  L+AN  VY+  +Y
Sbjct:     1 MDNEKGTSSSDLTTR------QRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREY 54

Query:    61 NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
             +MD +  V +++ W   ++   I GA +SD+Y G+F T+++GSIA  LGM ++T T+ +P
Sbjct:    55 HMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVP 114

Query:   121 KLRPPDCTG----AQCPQPEGWQXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKG 176
              LRPP CT      QC      Q                  R C++ F  DQFD +T +G
Sbjct:   115 NLRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEG 174

Query:   177 KSQLESFFNWWYFSFXXXXXXXXXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
             +    SFF+W+Y +             Y+Q N+SW +GFAIPT   F ++++  +G   Y
Sbjct:   175 REGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYY 234

Query:   237 IIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFR 296
             +   P+GSVF  + KV+ A+ +KRK      SG   + P L   ET+ ++ KL  T++FR
Sbjct:   235 VFVKPEGSVFSGVFKVLVAAYKKRKARF--TSGIDYHQPLL---ETDLQSNKLVLTDQFR 289

Query:   297 CLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNT 356
              L+KA +++++   D+ G  +  WR C++ Q+E +K ++++ P++ + I  FLAM+QQ T
Sbjct:   290 FLNKAVIVMNN---DEAGNEE--WRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQT 344

Query:   357 IGILQAIQTNKRF-G-SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTM 414
               + QA++ + +F G S+ +PP  + +IS+L +  W+ FYE V V   + +T +   +++
Sbjct:   345 FTVSQALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISL 404

Query:   415 RQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAV 474
              Q++ IG + +I ++L++G VERKRR  +L +G     +S+  L PQ    G  + F  V
Sbjct:   405 LQKVGIGNIFSISTMLISGIVERKRRDLSL-NGV---KMSVFWLTPQQVLMGFYQVFTIV 460

Query:   475 AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNK 534
              + EF   Q+P +MR++  ++ +L LS++SY++SA+V+I+H +T +  ++ WL   D++K
Sbjct:   461 GLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTARGGQS-WLTD-DIDK 518

Query:   535 DTLDYFYFTIAALEVVNLLYFNFFACRF 562
               LD FY+ IAAL  +N ++F + A R+
Sbjct:   519 SKLDCFYYFIAALSTLNFIFFFWCARRY 546

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 197/540 (36%), Positives = 305/540 (56%)

Query:    23 RPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTA 82
             RPKGG  ++ +I  NE  EKLA +   ANM  YL T+ ++      N ++ + G+SSLT 
Sbjct:    22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81

Query:    83 IPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ-CPQPEGWQXX 141
             + GA ++D++ GRF T+ + SI   +GM ++T++A IP LRPP C G + C   +  Q  
Sbjct:    82 LLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLS 141

Query:   142 XXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFXXXXXXXXXX 201
                             RPC +AFGADQFD + P   ++  ++FNW+YF            
Sbjct:   142 ILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTV 201

Query:   202 XXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRK 261
               +IQ NV W LG  IPT   FLS++ F+ G+  Y    P GS F  + +V  A+ RKRK
Sbjct:   202 LVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRK 261

Query:   262 VNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWR 321
             + +  +  + LY      +   S   KL HT     LDKAA++ +   L   G+  N WR
Sbjct:   262 LRM-VSDPSLLYFNDEIDAPI-SLGGKLTHTKHMSFLDKAAIVTEEDNLKP-GQIPNHWR 318

Query:   322 LCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRF-GSFNVPPGWMG 380
             L ++ +VE+LK ++ M P+  +GI    A  QQ T  + QA   N+    SF +P G M 
Sbjct:   319 LSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMS 378

Query:   381 LISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRR 440
             + + + + T I FY+RVFV +++K TG +  +T   R+ IG +++I++ LVAGFVE KR+
Sbjct:   379 VFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRK 438

Query:   441 LSALQHGSFESP-----ISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV 495
               A++HG  + P     IS L L+PQ+   G+ E F ++  +EF   Q PESMR+ + A+
Sbjct:   439 SVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATAL 498

Query:   496 FFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYF 555
             F++++SI +Y+++ LV ++H  + K   + WL   +LN+  L+YFY+ I  L+ VNL+Y+
Sbjct:   499 FWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYY 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 182/570 (31%), Positives = 311/570 (54%)

Query:     1 MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
             MEN  + T   Q   +   + ++ KGG  ++ +I+ NE FEK+AS  L+ NM +YL   Y
Sbjct:     1 MENPPNETEAKQIQTN---EGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDY 57

Query:    61 NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
                     NV+ +W  +S+ T + GA LSD+YLGRF T+   S++SFLGM ++ LTA +P
Sbjct:    58 RFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLP 117

Query:   121 KLRPPDC----TGAQCPQPEGWQXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTT-TPK 175
             +++P  C     G+ C      Q                  RPC++AFGADQ D    PK
Sbjct:   118 QVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPK 177

Query:   176 GKSQLESFFNWWYFSFXXXXXXXXXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHT 235
              +  LESFF W+Y S             YIQ ++ W +GF +P     ++ ++F++    
Sbjct:   178 NERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPL 237

Query:   236 YIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRF 295
             Y+ +    S+F  +A+ I A+ +KRK++L     +  +D      ++E K    P + + 
Sbjct:   238 YVTRGVTKSLFTGLAQAIVAAYKKRKLSL--PDHHDSFDCYYHMKDSEIKA---P-SQKL 291

Query:   296 RCLDKAAVIVD-SSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQ 354
             R L+KA +I +   E+  DG A N WRLC+  +VE+LK L+ + P+W TGI   +   Q 
Sbjct:   292 RFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQ- 350

Query:   355 NTIGILQAIQTNKRFG----SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKI 410
             ++  +LQA   ++R      SF VP G  G+ +++ L+ W+  Y+R  +PL+ K+ G+  
Sbjct:   351 SSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPF 410

Query:   411 RLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESP-----ISILVLVPQFSFS 465
             RL+++ R+ +G+ M+ L++ ++  VE  RR  A+  G   +      IS + LVPQ+   
Sbjct:   411 RLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLH 470

Query:   466 GLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAP 525
             GL E   A+   EF  T+ P+SM +++ ++F L ++++S + S ++N ++ LT +  K  
Sbjct:   471 GLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKES 530

Query:   526 WLGGTDLNKDTLDYFYFTIAALEVVNLLYF 555
             W+   ++NK   +Y+Y+ +A +  +N++Y+
Sbjct:   531 WVSD-NINKGHYNYYYWVLAIMSFINVIYY 559

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 191/562 (33%), Positives = 293/562 (52%)

Query:    10 VDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVN 69
             VD N    PP  ++  G W++  +ILGNE  E+LA   +  N+  YL TK +   +    
Sbjct:    30 VDFNGN--PPLKEKT-GNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query:    70 VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG 129
              V+ W G+  LT + GA+L+D Y GR+ T+   S   F+GM  +TL+AS+P L+P +C G
Sbjct:    87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query:   130 AQCPQPEGWQXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF 189
               CP     Q                  +PC  +FGADQFD T  + + +  SFFNW+YF
Sbjct:   147 DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYF 206

Query:   190 SFXXXXXXXXXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDM 249
             S             +IQ N  W LGF IPT    L+I  F  G   Y  + P GS    +
Sbjct:   207 SINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRI 266

Query:   250 AKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSE 309
             ++V+ AS RK  V + +     LY+    ++   + + K+ HT+  + LDKAAVI  S E
Sbjct:   267 SQVVVASFRKSSVKVPE-DATLLYETQ-DKNSAIAGSRKIEHTDDCQYLDKAAVI--SEE 322

Query:   310 LDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRF 369
                 G   N WRLC++ QVE+LK+L+ MFP+W +GI       Q +T+ + Q    N + 
Sbjct:   323 ESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKI 382

Query:   370 GSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSL 429
             GSF +PP  +G     ++  W+  Y+R  VPL++K TG     T  QR+ IG+ +++L +
Sbjct:   383 GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCM 442

Query:   430 LVAGFVERKRRLSALQHGSFES----PISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP 485
               A  VE  R   A   G  ES    PIS+L  +PQ+   G  E F  +  +EF   Q P
Sbjct:   443 AAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSP 502

Query:   486 ESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIA 545
             ++MR++  A+  L+ ++ +Y++S ++ ++   T +  +  W+   +LN   LDYF++ +A
Sbjct:   503 DAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISD-NLNSGHLDYFFWLLA 561

Query:   546 ALEVVNLLYFNFFACRFVSSNA 567
              L +VN+  + F A R+    A
Sbjct:   562 GLSLVNMAVYFFSAARYKQKKA 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 185/568 (32%), Positives = 306/568 (53%)

Query:     1 MENEIHSTLVDQNSRSPPPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY 60
             MEN    T   + +   P   +R KGG  ++ +I+ NE FEK+AS  L+ NM +YL + Y
Sbjct:     1 MENPPDQT-ESKETLQQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDY 59

Query:    61 NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIP 120
              +  +    V+ +W  +++   + GA LSD+YLGRF T++  S++S LGM ++ LTA +P
Sbjct:    60 RLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLP 119

Query:   121 KLRPPDCT---GAQCPQPEGWQXXXXXXXXXXXXXXXXXXRPCNIAFGADQFDTT-TPKG 176
             +++P  C    G  C      Q                  RPC++AFGADQ D    PK 
Sbjct:   120 QVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKN 179

Query:   177 KSQLESFFNWWYFSFXXXXXXXXXXXXYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
             +  LESFF W+Y S             YIQ ++ W +GF IP     L+  +F+     Y
Sbjct:   180 ERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLY 239

Query:   237 IIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFR 296
             + ++   S+F  +A+V+ A+  KR + L     +      L  SE ++ + KL    RF 
Sbjct:   240 VKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKL----RF- 294

Query:   297 CLDKAAVIVDSSE-LDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQN 355
              L+KA  I +  E L  DG A N WRLC+  QVE+LK LV + PVW TGI   + + Q N
Sbjct:   295 -LNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQ-N 352

Query:   356 TIGILQAIQTNKRFGS---FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRL 412
             +  +LQA   ++R  S   F +P G  G+ +++ L +W+  Y+R  +PL+ K+ G+ +R+
Sbjct:   353 SFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRV 412

Query:   413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHG---SFESPISI--LVLVPQFSFSGL 467
              ++ R+ +G+ ++ L++ V+  VE  RR +A+  G      S +SI  + LVPQ+   GL
Sbjct:   413 NVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGL 472

Query:   468 TEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWL 527
              E    +   EF  T+ P+SM +++ ++F L +++++ + S ++N +   +K+     W+
Sbjct:   473 AEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWI 531

Query:   528 GGTDLNKDTLDYFYFTIAALEVVNLLYF 555
                ++NK   DY+Y+ +A L  VN++Y+
Sbjct:   532 ED-NINKGHYDYYYWVLAILSFVNVIYY 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E8X3	PTR52_ARATH	No assigned EC number	0.5671	0.9371	0.9874	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	589
pfam00854	372	pfam00854, PTR2, POT family	2e-49
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-25
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	6e-19
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-07
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.001

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  175 bits (445), Expect = 2e-49
 Identities = 112/401 (27%), Positives = 170/401 (42%), Gaps = 47/401 (11%)

Query: 96  FRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSG 155
           F+T+L GSI   +G  ++TL A  P L P              Q+++ Y GL L+A+G+G
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-------------QVALFYIGLYLIALGTG 47

Query: 156 GIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGF 215
           GI+P   AFGADQFD        + + FF+W+YFS     ++A     Y+Q NV + LGF
Sbjct: 48  GIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGF 104

Query: 216 AIPTGCFFLSIVVFLIGYHTYIIKNPQ-GSVFVDMAKVITASCRKRKVNLGQASGNSLYD 274
            +P     L+++VFL+G   Y  K P  GS F      I  +  K +        + LY 
Sbjct: 105 GLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYW 164

Query: 275 PPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLL 334
                ++  S +    HT         AVI            K          V  L+ +
Sbjct: 165 ALEKYNK-RSISQTKVHTR-------VAVI-------FIPLPKFWALFDQQGSVWLLQAI 209

Query: 335 VAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKR--FGSFNVPPGWMGLISMLTLSTWIF 392
           + M P+W   I     M  Q    I++ + T  R  +  F +PP      + L +   + 
Sbjct: 210 LLMLPIWAFWIL-PDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLP 268

Query: 393 FYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFES- 451
             + +  PL +     K  LT+ QR  +G+ + I++  +A  VE KR   A   G     
Sbjct: 269 ILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPG 324

Query: 452 ---PISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR 489
              P+ IL  +P+   SG+         +EF    LP SM 
Sbjct: 325 WTVPLFILWSLPELFISGV----GLAGALEFAPDALPSSMM 361

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  110 bits (276), Expect = 2e-25
 Identities = 84/487 (17%), Positives = 173/487 (35%), Gaps = 63/487 (12%)

Query: 29  RSIKYILGNETFEKLASMSLIANMTVYLRTKY----NMDGILLVNVVSIWGGSSSLTAIP 84
           R +  I   E +E+ +   + A + +YL  +       D      + S +G    LT I 
Sbjct: 21  RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80

Query: 85  GALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILY 144
           G  L+D  LG  RT++ G+I   +G  ++ +                           LY
Sbjct: 81  GGWLADRVLGTRRTIVLGAILMAIGHLVLAI-------------------SSVSGPGGLY 121

Query: 145 AGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY 204
            GLAL+ +G+G  +P   +   + +    PK   + +  F  +Y    +  ++A      
Sbjct: 122 IGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177

Query: 205 IQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNL 264
           +  N  W +GF +      + +V+FL+G                ++             L
Sbjct: 178 LAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI-GGVPDPNPLSF------NFLLPVL 230

Query: 265 GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCS 324
           G      L    L    T                    VI     +    +A        
Sbjct: 231 G-----GLVVMILAALLTLLLNQNTFSGV-------LLVISILIAIIYFAEAFR-SPKVF 277

Query: 325 LLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQT-NKRFGSFNVPPGWMGLIS 383
               ++ + L+A  P+++  +  +   +Q  +   L A +  N++   F VPP W   ++
Sbjct: 278 ----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLN 333

Query: 384 MLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSA 443
                 +I  +  +   L  K+     + +   +  +G+++A L  L+         L+ 
Sbjct: 334 ----PFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILL-------LAG 382

Query: 444 LQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSIS 503
           +  G     +S+  LV  +      E F +   +  +T   P ++++   A++FL+++  
Sbjct: 383 IWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAG 442

Query: 504 SYINSAL 510
             +   +
Sbjct: 443 QTLGGQV 449

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 90.2 bits (224), Expect = 6e-19
 Identities = 97/404 (24%), Positives = 169/404 (41%), Gaps = 84/404 (20%)

Query: 57  RTKYNMDGILLVNVVSIWGGSSS--------------LTAIPGALLSDTYLGRFRTLLYG 102
            + Y M  IL++ +++  G +                LT + GAL++D++LG+F+T+LY 
Sbjct: 1   FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60

Query: 103 SIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNI 162
           S+   +G  + +L A +P L  P               ++   GLAL+A+G+GGI+PC  
Sbjct: 61  SLVYVVGHALASLGA-VPSLGHP------------LHDALSLVGLALIALGTGGIKPCVS 107

Query: 163 AFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWI-------LGF 215
           AFG DQF     +  S    FF+++YF+     + +      ++ +V          L F
Sbjct: 108 AFGGDQF---EERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAF 164

Query: 216 AIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDP 275
            +P     L+++VF +G   Y  K P G++   + K I  + +KR       S     D 
Sbjct: 165 GVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR---FRTRSE----DW 217

Query: 276 PLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLV 335
           P                     LD AA       +             S  ++ ++  L 
Sbjct: 218 PRLHW-----------------LDWAAPKYLIRMIR------------STKRLLRVLFLF 248

Query: 336 AMFPVWITGIFCFLAM-DQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFY 394
              P+       F A+ DQQ +   LQA + +   G F + P  M  ++ L +   +  +
Sbjct: 249 IPLPM-------FWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIF 301

Query: 395 ERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERK 438
           + V  P   K      R T  +++ +G+L+A L+  VA  ++ K
Sbjct: 302 DYVVYPALAKC---GTRFTSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 28/195 (14%)

Query: 44  ASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS 103
               L++     L     +       +VS +    +L ++    LSD + GR R LL G 
Sbjct: 13  LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGL 71

Query: 104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIA 163
           +   LG  ++   +S+                      +L  G  LL +G G + P   A
Sbjct: 72  LLFALGSLLLAFASSLW---------------------LLLVGRFLLGLGGGALYPAAAA 110

Query: 164 FGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFF 223
             A+ F         +       +   F +  ++       +  ++ W   F I      
Sbjct: 111 LIAEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164

Query: 224 LSIVVFLIGYHTYII 238
           L  ++ L      ++
Sbjct: 165 LLALLLLFLLRLLLL 179

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 29  RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALL 88
           R+I Y++  + +E  +   + A + +YL  +   D      + S +     +T I G  L
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 89  SDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLA 148
           +D  LG    ++ G  A  + +G + L AS  ++ P                S LY  LA
Sbjct: 69  ADKVLGNRMAVMLG--ALLMAIGHVVLGAS--EIHP----------------SFLYLSLA 108

Query: 149 LLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN 208
           ++  G G  +        + ++ T P+     +  F+  Y +  V  ++A  A  Y Q  
Sbjct: 109 IIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEE 164

Query: 209 VSWILGFAIPTGCFFLSIVVFLIG 232
            SW +GF +        +V+FL G
Sbjct: 165 YSWAMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 28/189 (14%)

Query: 43  LASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYG 102
           L    L   + +YL     +    +  +++ +    +L       LSD + GR R LL G
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 103 SIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNI 162
            +   LG+ ++   +S+                      +L     L  +G G + P   
Sbjct: 69  LLLFALGLLLLLFASSLW---------------------LLLVLRVLQGLGGGALFPAAA 107

Query: 163 AFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCF 222
           A  AD F         +           F +   +       + +   W   F I     
Sbjct: 108 ALIADWF------PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILA 161

Query: 223 FLSIVVFLI 231
            L+ V+  +
Sbjct: 162 LLAAVLAAL 170

Length = 346

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 40/191 (20%)

Query: 60  YNMDGILLV----------------NVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS 103
           Y M GIL V                 +   +     L    G    D   G  +T++ G 
Sbjct: 27  YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG 86

Query: 104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIA 163
           I   LG   M   +  P L                    ++ GL  +A+GSG  +    +
Sbjct: 87  IVLMLGH-FMLAMSIYPDL--------------------IFYGLGTIAVGSGLFKANPSS 125

Query: 164 FGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFF 223
                ++        + +  F  +Y S  +   ++      I  N  + +GF +      
Sbjct: 126 MVGKLYERGD---MPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMV 182

Query: 224 LSIVVFLIGYH 234
           + ++ F  G H
Sbjct: 183 IGLLTFFAGRH 193

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	589
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
PRK10504	471	putative transporter; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PLN00028	476	nitrate transmembrane transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
PRK09952	438	shikimate transporter; Provisional	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
PRK12307	426	putative sialic acid transporter; Provisional	99.92
PRK03699	394	putative transporter; Provisional	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.91
PRK15011	393	sugar efflux transporter B; Provisional	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK15075	434	citrate-proton symporter; Provisional	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.9
KOG0254	513	consensus Predicted transporter (major facilitator	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
PRK11043	401	putative transporter; Provisional	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK11010	491	ampG muropeptide transporter; Validated	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.84
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.82
PRK11902	402	ampG muropeptide transporter; Reviewed	99.82
TIGR00901	356	2A0125 AmpG-related permease.	99.81
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.79
PRK10429	473	melibiose:sodium symporter; Provisional	99.79
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.79
PRK09669	444	putative symporter YagG; Provisional	99.78
PRK09848	448	glucuronide transporter; Provisional	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.74
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.74
PF13347	428	MFS_2: MFS/sugar transport protein	99.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.74
PTZ00207	591	hypothetical protein; Provisional	99.74
KOG2615	451	consensus Permease of the major facilitator superf	99.73
PRK11462	460	putative transporter; Provisional	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.72
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.69
KOG2533	495	consensus Permease of the major facilitator superf	99.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.68
COG2211	467	MelB Na+/melibiose symporter and related transport	99.67
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.54
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.53
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.51
PRK15011	393	sugar efflux transporter B; Provisional	99.49
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.47
KOG2563	480	consensus Permease of the major facilitator superf	99.46
PRK10642	490	proline/glycine betaine transporter; Provisional	99.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.4
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.4
PRK03699	394	putative transporter; Provisional	99.4
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.37
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.37
PRK09952	438	shikimate transporter; Provisional	99.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.34
PRK09874	408	drug efflux system protein MdtG; Provisional	99.32
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.32
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.31
PRK03545	390	putative arabinose transporter; Provisional	99.3
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.3
PRK12382	392	putative transporter; Provisional	99.3
TIGR00893	399	2A0114 d-galactonate transporter.	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.27
PRK03633	381	putative MFS family transporter protein; Provision	99.26
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.24
PRK10489	417	enterobactin exporter EntS; Provisional	99.24
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
PRK11663	434	regulatory protein UhpC; Provisional	99.24
TIGR00891	405	2A0112 putative sialic acid transporter.	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.22
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.22
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.19
PRK15075	434	citrate-proton symporter; Provisional	99.19
PRK11010	491	ampG muropeptide transporter; Validated	99.19
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.19
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.17
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.14
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.11
KOG3626	735	consensus Organic anion transporter [Secondary met	99.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.09
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.09
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.08
TIGR00900	365	2A0121 H+ Antiporter protein.	99.08
PRK10091	382	MFS transport protein AraJ; Provisional	99.07
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.07
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.06
PRK10133	438	L-fucose transporter; Provisional	99.06
PRK10504	471	putative transporter; Provisional	99.05
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.05
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.04
PLN00028	476	nitrate transmembrane transporter; Provisional	99.02
PRK12307	426	putative sialic acid transporter; Provisional	99.02
PRK10054	395	putative transporter; Provisional	99.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.01
TIGR00895	398	2A0115 benzoate transport.	99.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.98
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.98
PRK11902	402	ampG muropeptide transporter; Reviewed	98.97
PF13347	428	MFS_2: MFS/sugar transport protein	98.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.91
PRK09848	448	glucuronide transporter; Provisional	98.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.91
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.83
TIGR00901	356	2A0125 AmpG-related permease.	98.79
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.79
PRK10429	473	melibiose:sodium symporter; Provisional	98.79
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.78
TIGR00898	505	2A0119 cation transport protein.	98.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.75
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.75
PRK09669	444	putative symporter YagG; Provisional	98.71
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.71
KOG0569	485	consensus Permease of the major facilitator superf	98.7
PRK11043	401	putative transporter; Provisional	98.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.67
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.64
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.61
KOG3762	618	consensus Predicted transporter [General function	98.6
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.55
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.45
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.44
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.44
COG2211	467	MelB Na+/melibiose symporter and related transport	98.44
PRK11462	460	putative transporter; Provisional	98.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.4
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.4
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.39
KOG2532	466	consensus Permease of the major facilitator superf	98.34
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.32
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.31
COG0477	338	ProP Permeases of the major facilitator superfamil	98.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.3
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.19
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.18
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.13
PF12832	77	MFS_1_like: MFS_1 like family	98.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.08
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.03
PTZ00207	591	hypothetical protein; Provisional	98.02
KOG0637	498	consensus Sucrose transporter and related proteins	98.01
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.99
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.94
KOG2615	451	consensus Permease of the major facilitator superf	97.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.89
TIGR00805	633	oat sodium-independent organic anion transporter.	97.88
KOG2533	495	consensus Permease of the major facilitator superf	97.81
KOG0254	513	consensus Predicted transporter (major facilitator	97.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.76
KOG3762	618	consensus Predicted transporter [General function	97.76
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.67
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.44
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.36
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.18
PRK03612	521	spermidine synthase; Provisional	97.15
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.62
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.5
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.31
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.11
KOG2563	480	consensus Permease of the major facilitator superf	96.1
KOG0637	498	consensus Sucrose transporter and related proteins	95.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.61
KOG3626	735	consensus Organic anion transporter [Secondary met	95.24
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.82
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.71
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	94.2
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.99
KOG3810	433	consensus Micronutrient transporters (folate trans	93.82
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.35
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.54
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.14
COG3202	509	ATP/ADP translocase [Energy production and convers	89.46
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.78
KOG3880	409	consensus Predicted small molecule transporter inv	88.32
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	85.11
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.49
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	83.88
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	81.85
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	80.47
COG0477	338	ProP Permeases of the major facilitator superfamil	80.05

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-42  Score=374.66  Aligned_cols=529  Identities=40%  Similarity=0.692  Sum_probs=467.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      ....|++..++++.+.++++++|++..++..|++..++.+..++...++.+.......++++++++|-|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCC----CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchh
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDC----TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQ  179 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (589)
                      ++..+|.+++.+...+|.+.++.|    ++..|..........++.++-+.++|.|+..|+..++.+|+|++..+..+..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999998888888776654    1223444455566788999999999999999999999999999766666667


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhc
Q 045410          180 LESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRK  259 (589)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (589)
                      +.+.|+|+|+..++|..++..+..++.++.+|.+.|.++.+...+++++++...+.++..+|.++++..+.+++..++++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            77999999999999999999999999999999999999999999999999999998988889999999999999999999


Q ss_pred             cccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHH
Q 045410          260 RKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFP  339 (589)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (589)
                      ++...+.+++.. .       .........+++++.++++.+++....+.  .++...++|+.|+.+.+++.|.+++.++
T Consensus       272 ~~~~~~~~~~~~-~-------~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~P  341 (571)
T KOG1237|consen  272 RKAVVSLDPEEL-Y-------YDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLP  341 (571)
T ss_pred             HhccCCCcchhc-c-------ccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhH
Confidence            887666553221 0       11122234455778899999988876553  4455678899999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhHHhhhhhcccccCc-ccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHH
Q 045410          340 VWITGIFCFLAMDQQNTIGILQAIQTNKRFGS-FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRI  418 (589)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i  418 (589)
                      .+...+++++.+.|+.+.+..|...++...++ ++++++.+..+..+..++..|+.+++..|+.+|+.+++++.+.+.++
T Consensus       342 i~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqri  421 (571)
T KOG1237|consen  342 IWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRI  421 (571)
T ss_pred             HHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhee
Confidence            99999999999999999999999999999988 99999999999999999999999999999999999887778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHH
Q 045410          419 TIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFL  498 (589)
Q Consensus       419 ~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  498 (589)
                      .+|+++..+++...+..+.+|.+.+.......+++|.+|.+|.++++|+++.+..+...++..+++|++||+.+++++.+
T Consensus       422 g~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~  501 (571)
T KOG1237|consen  422 GIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL  501 (571)
T ss_pred             eccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence            99999999999999999999888875522234589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410          499 SLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       499 ~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      ..++|+.++..++..+...++.  ..+|+.++++|.++.+++|++++....+..+.+..+.++.+.
T Consensus       502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~  565 (571)
T KOG1237|consen  502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDY  565 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeee
Confidence            9999999999999988766533  448998789999999999999999999999888877666543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-41  Score=347.53  Aligned_cols=460  Identities=17%  Similarity=0.264  Sum_probs=350.2

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN----MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLL  100 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~  100 (589)
                      .+++|.++.++.+|++|||+|||+...+..|+..+++    +|++++..+.+.|....++.++++||++||++|+||+++
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            4689999999999999999999999999999998877    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410          101 YGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL  180 (589)
Q Consensus       101 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  180 (589)
                      .|.+++.+|+++++... .                  .+...++++.+++++|.|.++|++.++++|++|++++|++   
T Consensus        97 lGail~~iGh~~L~~~~-~------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD---  154 (498)
T COG3104          97 LGAILMAIGHLVLAISS-V------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD---  154 (498)
T ss_pred             HHHHHHHHHHHHHhccc-c------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC---
Confidence            99999999999999863 0                  1345699999999999999999999999999999987755   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCC--CChH--HHHH----HH
Q 045410          181 ESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQ--GSVF--VDMA----KV  252 (589)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~--~~~~----~~  252 (589)
                       .+++++|+++|+|+.++|++.+++.+++||+..|.++++.+.++++.++..+++.......  ..+.  ....    ..
T Consensus       155 -~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (498)
T COG3104         155 -GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGL  233 (498)
T ss_pred             -CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHH
Confidence             5799999999999999999999999999999999999999999999988887765543321  1111  1111    11


Q ss_pred             HHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCC--CCCCCcccchhhhHHH
Q 045410          253 ITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDG--KAKNGWRLCSLLQVEQ  330 (589)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  330 (589)
                      +...+... .          +              ..   -....++..........  ..+  .....|   .+.. .+
T Consensus       234 ~~~~~~~~-~----------~--------------~~---l~~~~~~~~~~~~~i~~--~~~~~~~~~~~---~~~~-~e  279 (498)
T COG3104         234 VVMILAAL-L----------T--------------LL---LNQNTFSGVLLVISILI--AIIYFAEAFRS---PKVF-DE  279 (498)
T ss_pred             HHHHHHHH-H----------H--------------HH---HHHHHHHHHHHHHHHHH--HHHHHHHHhcc---CccH-HH
Confidence            10000000 0          0              00   00000000000000000  000  000111   1112 67


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCC
Q 045410          331 LKLLVAMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKK  409 (589)
Q Consensus       331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~  409 (589)
                      +|+++..+++++...+||++++|.++....+. +..+.+..++++++++.+.+|++.++++.|+++++..++.++.    
T Consensus       280 r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----  355 (498)
T COG3104         280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----  355 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----
Confidence            88999999999999999999999999555554 5556665679999999999999999999999999976665554    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhh
Q 045410          410 IRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR  489 (589)
Q Consensus       410 ~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r  489 (589)
                      +.++...++.+|+++++.+++++.......   +    ++....|.+|+++.++++++||.+.+|...+++++.+|+++.
T Consensus       356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~---~----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~  428 (498)
T COG3104         356 KQPSTPIKFALGLILAGLGFLILLLAGIWF---G----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK  428 (498)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHhh---c----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence            235888999999999999999988774211   1    123367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045410          490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFV  563 (589)
Q Consensus       490 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~  563 (589)
                      +..+|+|.+....++.++..+.+...+ +.          ...+......+|..++++..+..+..+...++.+
T Consensus       429 s~~ma~wfLt~a~~~~l~g~va~~~~~-~~----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         429 SFIMAMWFLTVAAGQTLGGQVAGLTAV-TD----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhceecccccc-cc----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999998888763221 00          0111123345677888877777777666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.7e-36  Score=327.71  Aligned_cols=455  Identities=12%  Similarity=0.163  Sum_probs=329.4

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      ++||.++.+++++++|+++||++.++++.|+++++|++.++++++.+.+....++.++++|+++||++||||+++++.++
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999945999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      +.++++.++++.+                    ....++++|+++++|.|.+.|+..++++|+||++++    +|.+.++
T Consensus        91 ~~~g~~~~~~~~~--------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~  146 (489)
T PRK10207         91 LAIGYFMTGMSLL--------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFT  146 (489)
T ss_pred             HHHHHHHHHHhcc--------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchh
Confidence            9999999998651                    123466889999999999999999999999987542    3456799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc--CCCCChHHHHHHHHH-------HH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK--NPQGSVFVDMAKVIT-------AS  256 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~  256 (589)
                      ++|++.|+|..+||.+++++.++.|||+.|+++.+..+++++.+...++++++.  +|++++. +......       ..
T Consensus       147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~  225 (489)
T PRK10207        147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMI  225 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999997766555555555554443332  2222211 1111100       00


Q ss_pred             HhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhh------hhhhcCCccccCCCCCCCcccchhhhHHH
Q 045410          257 CRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKA------AVIVDSSELDDDGKAKNGWRLCSLLQVEQ  330 (589)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (589)
                      ..-...  .+.                       .......+...      .......               . ....+
T Consensus       226 ~~~~~~--~~~-----------------------~~~~~~~~~~~~~i~~~~f~~~~~---------------~-~~~~~  264 (489)
T PRK10207        226 FVCAWL--MHN-----------------------VEVANLVLIVLSIVVTIIFFREAF---------------K-LDKTG  264 (489)
T ss_pred             HHHHHH--Hhh-----------------------hhHHHHHHHHHHHHHHHHHHHHHh---------------c-CCHHH
Confidence            000000  000                       00000000000      0000000               0 01123


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCC
Q 045410          331 LKLLVAMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKK  409 (589)
Q Consensus       331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~  409 (589)
                      +++.+..+.++....++|..+.|.......+. ...+....++..+++++.++|++..++..|+.+++    .+|+++|+
T Consensus       265 r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~  340 (489)
T PRK10207        265 RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKG  340 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCC
Confidence            44566666667778889999999866443333 35666666788888999999999999999997665    67777666


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhh
Q 045410          410 IRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR  489 (589)
Q Consensus       410 ~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r  489 (589)
                      .+.++..++.+|+++.+++++.+.......   ...+    ...+.+++++.+++.++||.+..|..++++.+.+|++++
T Consensus       341 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~----~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        341 KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ----GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC----CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            667899999999999999987664432100   0011    145678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410          490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       490 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      |.++|++++..++|+.++..+...+....  ...++.     .....+.++|..++++.++..++++.+.+..++
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~--~~~~~~-----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~  481 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAVPD--NITDPL-----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR  481 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887553100  000010     011236678888888888777777776665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=9.2e-36  Score=317.36  Aligned_cols=447  Identities=16%  Similarity=0.194  Sum_probs=322.8

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      +++|.++.++++++++++++|++..+++.|+++.+|+++.+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999944999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..+++++++....                    +...++++..+..+|.|...++..++++|+||++++    +|.++++
T Consensus        86 ~~lg~lll~~~~~--------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~  141 (493)
T PRK15462         86 MAIGHVVLGASEI--------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS  141 (493)
T ss_pred             HHHHHHHHHHhhc--------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence            9999887765320                    123355556667788888999999999999987542    3667899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc---CCCCChHHHHHHHH-----HHH-
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK---NPQGSVFVDMAKVI-----TAS-  256 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~-  256 (589)
                      ++|...|+|+.++|.+++++.+.+||++.|.++++.++++++.+...++++.+.   ++++.+.++.....     ... 
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV  221 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998777666666665555443322   11111101100000     000 


Q ss_pred             ----HhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHH
Q 045410          257 ----CRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLK  332 (589)
Q Consensus       257 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (589)
                          ......                           .+......+....+..-.         ...+......+.++++
T Consensus       222 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~er~  265 (493)
T PRK15462        222 ATPALITVLF---------------------------WKEWSVYALIVATIIGLG---------VLAKIYRKAENQKQRK  265 (493)
T ss_pred             HHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH---------HHHHHHHhcCCHHHHh
Confidence                000000                           000000000000000000         0000000001235678


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcchh-hHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCC
Q 045410          333 LLVAMFPVWITGIFCFLAMDQQNT-IGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIR  411 (589)
Q Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~  411 (589)
                      ++...+.+++..++||..+.|.++ ...+...++|.+++++++++++++++|++.++++.|++.++    ..|+.+|++.
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~  341 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRT  341 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCC
Confidence            888999999999999999999998 66666688899999999999999999999999999998887    4454333334


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHH
Q 045410          412 LTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTV  491 (589)
Q Consensus       412 ~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~  491 (589)
                      .+...++.+|+++++++++++.+....    ...++    ..+.+|++..++++++||.+..|...+++.+.+|++.||+
T Consensus       342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~----~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~  413 (493)
T PRK15462        342 VRIWGKFALGLGLMSAGFCILTLSARW----SAMYG----HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGV  413 (493)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC----CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHH
Confidence            688999999999999999988775421    11111    4688899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhhccccccCCCCCCCCC--CCcchhHHHHHHHHHHHHHH
Q 045410          492 SGAVFFLSL-SISSYINSALVNIIHGLTKKYAKAPWLGGTD--LNKDTLDYFYFTIAALEVVN  551 (589)
Q Consensus       492 ~~g~~~~~~-~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~--~~~~~~~~~f~~~a~~~~~~  551 (589)
                      .+|++.+.. .+|+.+++.+..........    +-   .+  .+...|..+|..++.+.++.
T Consensus       414 ~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~---~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        414 LTGIYMLLSGAIANYLAGVIADQTSQASFD----AS---GAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCC----cc---ccccchhhhHHHHHHHHHHHHHHH
Confidence            999998754 68888888777755321100    00   00  01224566777777666555

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=1.3e-35  Score=320.42  Aligned_cols=453  Identities=13%  Similarity=0.149  Sum_probs=328.2

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTK--YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYG  102 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~  102 (589)
                      .+++|.++.++..++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++||||+++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            45778888899999999999999999999999987  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhh
Q 045410          103 SIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLES  182 (589)
Q Consensus       103 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (589)
                      .++.+++.++++++.                     +.+.++++|++.|+|.|...|+..++++|++|++++   .+|.+
T Consensus        86 ~~~~~~g~~~~~~~~---------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~  141 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI---------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDG  141 (475)
T ss_pred             HHHHHHHHHHHHhcc---------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccc
Confidence            999999999888865                     556788899999999999999999999999986542   23667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHH-----HH--H---
Q 045410          183 FFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDM-----AK--V---  252 (589)
Q Consensus       183 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~---  252 (589)
                      +++++|++.|+|..+||.+++++.+++||++.|.++++..+++++.+...++.+++.++++++..+.     .+  .   
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLA  221 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHH
Confidence            8999999999999999999999999899999999988766666555555444433222221111000     00  0   


Q ss_pred             -HHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHH
Q 045410          253 -ITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQL  331 (589)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (589)
                       +...++..... .+..     .        .+        ...+............   ..   .++.    .+. .+.
T Consensus       222 ~~~~~~~~~~~~-~~~~-----~--------~~--------~~~~~~~~~~~~~~~~---~~---~~~~----~~~-~~~  268 (475)
T TIGR00924       222 ALALVFFCAWLM-HHVV-----I--------AN--------ILLMTVTLAVIIFFFR---LA---FKPR----LDA-VAR  268 (475)
T ss_pred             HHHHHHHHHHHH-hccH-----H--------HH--------HHHHHHHHHHHHHHHH---HH---Hhcc----CCH-HHH
Confidence             00000000000 0000     0        00        0000000000000000   00   0000    011 223


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhcchh-hHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCC
Q 045410          332 KLLVAMFPVWITGIFCFLAMDQQNT-IGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKI  410 (589)
Q Consensus       332 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~  410 (589)
                      ++....+++++...++|..+.|..+ ...++...++.+.++++++++++.++|++.+++..|+.+++    ..|+.+|++
T Consensus       269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~  344 (475)
T TIGR00924       269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGK  344 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCC
Confidence            3445567788889999999999888 45555566777777788999999999999999999997765    444444433


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhH
Q 045410          411 RLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRT  490 (589)
Q Consensus       411 ~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  490 (589)
                      +.+...++.+|+++.+++++..++...    ..    +.....+.+|+++.+++.++||.+..|..++++.+.+|++.||
T Consensus       345 ~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~----~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g  416 (475)
T TIGR00924       345 DPTTPLKFTLGMLFCGASFLTFAASIW----FA----DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG  416 (475)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHh----hc----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence            457777899999999999988876521    11    1112568899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045410          491 VSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFV  563 (589)
Q Consensus       491 ~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~  563 (589)
                      +++|++.+...+|+.+++.+.....+..      +           ...+|..++++.++..++++...+..+
T Consensus       417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       417 QMLGMWFLAQAMGSLLGGYLATFGAVPQ------G-----------VTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc------c-----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887664321      1           234566777777777676666655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=3.1e-34  Score=311.55  Aligned_cols=458  Identities=15%  Similarity=0.215  Sum_probs=325.1

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      .+++|.++.+++.++++++++|++.++++.|+++++|++.++.+++.+.+....+..++++|+++||++|||++++++.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999998888888888999999993399999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++.+++.+++++..                    +.+.++++|+++|+|.|...++..++++|+||+++    ++|...+
T Consensus        97 ~~~ig~~l~~~~~~--------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~~~  152 (500)
T PRK09584         97 VLAIGYALVAWSGH--------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAF  152 (500)
T ss_pred             HHHHHHHHHHHhcc--------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhhcc
Confidence            99999888887530                    34557788999999999999999999999998643    2344578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc--CCCCChHH--HHH----HHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK--NPQGSVFV--DMA----KVITAS  256 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~~~----~~~~~~  256 (589)
                      +++|++.++|+.+||.+++++.+++|||+.|.+.++..+++++.++...+..++.  +|++++.+  ...    ......
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALI  232 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHH
Confidence            8999999999999999999999999999999998876666655554444333322  22222111  110    000000


Q ss_pred             Hhcccc-ccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHH
Q 045410          257 CRKRKV-NLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLV  335 (589)
Q Consensus       257 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (589)
                      ...... ..++..                       ..............-             +.........+.++++
T Consensus       233 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  276 (500)
T PRK09584        233 AIATWLLHNQEIA-----------------------RMALGVVALGIVVIF-------------GKEAFAMKGAARRKMI  276 (500)
T ss_pred             HHHHHHHhcchHH-----------------------HHHHHHHHHHHHHHH-------------HHHHhhcCHHHHHHHH
Confidence            000000 000000                       000000000000000             0000001223456666


Q ss_pred             hHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCc
Q 045410          336 AMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTM  414 (589)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~  414 (589)
                      ..+.+++..+++|+.+.|.+.....+. ...+....++..+++++.++|++.+++..|+.++.    .+|+++|   .+.
T Consensus       277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~  349 (500)
T PRK09584        277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPM  349 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCc
Confidence            667778888999999999998666554 33555666778889999999999999999998776    4555444   367


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHH
Q 045410          415 RQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGA  494 (589)
Q Consensus       415 ~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g  494 (589)
                      ..++.+|+++++++++.+.+....    .+.+    ...+.+|+++.+++.++||++..|...+++.+.+|+++||+++|
T Consensus       350 ~~~~~~G~~l~~l~f~~l~~~~~~----~~~~----~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g  421 (500)
T PRK09584        350 PHKFAIGMVLCSGAFLVLPLGAKF----ANDA----GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMG  421 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----cCCC----CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHH
Confidence            789999999999999988776421    1111    24677789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410          495 VFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       495 ~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      ++.+...+|+.+++.+...+...       +-..+.....+.+.++|...+.++++..++++...+..++
T Consensus       422 ~~~l~~a~g~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        422 SWFLTTAGAALIAGYVANLMAVP-------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888887644210       0000000111236678888888777666666666555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.95  E-value=1e-25  Score=248.19  Aligned_cols=336  Identities=26%  Similarity=0.448  Sum_probs=273.0

Q ss_pred             HhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045410           43 LASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKL  122 (589)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~  122 (589)
                      ++||++.+.+..|+.+.+|++++++..+...+....++.++++|+++|+++||++.+.++.++..+|..++++.. .|..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999988754 2321


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 045410          123 RPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV  202 (589)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  202 (589)
                      ..            ......++++.++.++|.|++.|+..+..+|++++++   ++.|.++|+++|+++|+|+.+++++.
T Consensus        80 ~~------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~  144 (654)
T TIGR00926        80 GH------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIIT  144 (654)
T ss_pred             cc------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10            1134457788899999999999999999999997532   24578899999999999999999999


Q ss_pred             HHHHhhc-------chhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCC
Q 045410          203 VYIQTNV-------SWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDP  275 (589)
Q Consensus       203 ~~l~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (589)
                      +++.+.+       +|+..|.+++++++++++++...++++++.+|.+++..+..+++..+.++++.....+        
T Consensus       145 ~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~--------  216 (654)
T TIGR00926       145 PILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH--------  216 (654)
T ss_pred             HHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc--------
Confidence            9998543       6999999999999999988888888877777777777777777766666543211100        


Q ss_pred             CCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcch
Q 045410          276 PLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQN  355 (589)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  355 (589)
                                       ...+|++.+....                  ..+.+++.|++++++++++...++|..+.|..
T Consensus       217 -----------------~~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~  261 (654)
T TIGR00926       217 -----------------WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQG  261 (654)
T ss_pred             -----------------cchhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence                             0122333221100                  12356788999999999999999999999999


Q ss_pred             hhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045410          356 TIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFV  435 (589)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~  435 (589)
                      +.+..|...++.+++++..+++++..+|++.++++.|+++..+.|..+|.+.   +.++..++.+|++++++++++..+.
T Consensus       262 s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~v  338 (654)
T TIGR00926       262 SRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALV  338 (654)
T ss_pred             hHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888877777888999999999999999999998777777766543   2588999999999999999999988


Q ss_pred             HHHHh
Q 045410          436 ERKRR  440 (589)
Q Consensus       436 ~~~~~  440 (589)
                      +....
T Consensus       339 e~~~~  343 (654)
T TIGR00926       339 QLKVN  343 (654)
T ss_pred             HHHHh
Confidence            75543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=3.9e-24  Score=226.06  Aligned_cols=374  Identities=12%  Similarity=0.075  Sum_probs=240.2

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +|...+.+....++.....|. ...+.+.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +||||++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHH
Confidence            455555555555554444443 3334456778999999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+.+++                     +.+.++++|+++|++.+...+...+++.|.+|+      ++|++.+++
T Consensus        85 ~~~~~~~~~~~---------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~g~  137 (390)
T PRK03545         85 IASHVLSALAW---------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA------GKKAQALSL  137 (390)
T ss_pred             HHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------hhhhhHHHH
Confidence            99999998877                     788899999999999999899999999999986      357788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCC
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQ  266 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (589)
                      +..+.++|..++|.+++.+.+.+|||+.|++.+++.++..+..+...|+.+++  ++++.++    .             
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----~-------------  198 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----L-------------  198 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----H-------------
Confidence            99999999999999999999989999999987766554443333322211100  0000000    0             


Q ss_pred             CCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHH
Q 045410          267 ASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIF  346 (589)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  346 (589)
                                                        ..                        ..++.+........+.....
T Consensus       199 ----------------------------------~~------------------------~~~~~~~~~~~~~~~~~~~~  220 (390)
T PRK03545        199 ----------------------------------PL------------------------LFRRPALVSLYLLTVVVVTA  220 (390)
T ss_pred             ----------------------------------HH------------------------HHhCcHHHHHHHHHHHHHHH
Confidence                                              00                        00000000011111111111


Q ss_pred             HHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHH
Q 045410          347 CFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAI  426 (589)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~  426 (589)
                      .+....... .+.....+.+..      ..+.......+..+++..+.+++    .+|.++|        .+..+..+..
T Consensus       221 ~~~~~~~~~-~~l~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l----~dr~~~~--------~~~~~~~~~~  281 (390)
T PRK03545        221 HFTAYSYIE-PFVQQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRL----GNRHPSG--------FLLIAIALLL  281 (390)
T ss_pred             HHHHHHHHH-HHHHHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHH----hhccchh--------HHHHHHHHHH
Confidence            111111111 111111122211      12222233333444444443333    5554322        3445555555


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHH
Q 045410          427 LSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYI  506 (589)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  506 (589)
                      ++.......                ..+.+.+++..++.|++.....+.....+.+..| +.|+.++|+++....+|..+
T Consensus       282 ~~~~~l~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        282 VCLLLLLPA----------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             HHHHHHHHH----------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence            554433222                1133445556677788877777777788888877 57899999999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          507 NSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       507 ~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      |+.+.|.+.|..                 ++...|++.+.+.++++++++...
T Consensus       345 G~~~~G~~~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        345 GALLGNQVSLHL-----------------GLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHhcc-----------------ChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999887632                 234577788888888877776664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=4.8e-24  Score=225.96  Aligned_cols=378  Identities=14%  Similarity=0.068  Sum_probs=245.7

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      .+.+|.+..+....++..++.....+.++.|+.+++|.|+.+.+++.+++.++..+++++.|+++||+ ||||+++.+.+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~   89 (399)
T PRK05122         11 LRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLC   89 (399)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHH
Confidence            34556666677788888888777788899999999999999999999999999999999999999995 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++.++.+.+.++...+..             ...+.+.+++.|+++|++.+...+...+++.|.+|++      +|++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  150 (399)
T PRK05122         90 GCALSGLLYLLAGLLAAW-------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVI  150 (399)
T ss_pred             HHHHHHHHHHHhhhhhcc-------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccch
Confidence            888877766654311100             0114567899999999999999999999999998763      466778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhcccccc
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNL  264 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (589)
                      +++....++|..+++.+++++.+.+||++.+++..++.++..   ....+ .++.++++++                   
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~-------------------  207 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL---LLARP-RPAVPPVKGE-------------------  207 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH---HHHhc-CCCCCCCCcc-------------------
Confidence            888888899999999999999999999988776554433222   12111 1110000000                   


Q ss_pred             CCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHH-HHHHH
Q 045410          265 GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMF-PVWIT  343 (589)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  343 (589)
                                                                          +.++       .+..+...... ...+.
T Consensus       208 ----------------------------------------------------~~~~-------~~~~~~~~~~~~~~~~~  228 (399)
T PRK05122        208 ----------------------------------------------------RLPF-------RRVLGRVWPYGMGLALA  228 (399)
T ss_pred             ----------------------------------------------------chhH-------HHHHHHHHHHHHHHHHH
Confidence                                                                0000       00001110000 01111


Q ss_pred             HHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHH
Q 045410          344 GIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGIL  423 (589)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~  423 (589)
                      ...+... ..+...+.. ..+.+        ..........++.++..++.+++    .+|.++|       +.+..+..
T Consensus       229 ~~~~~~~-~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~~~-------~~~~~~~~  287 (399)
T PRK05122        229 SIGFGTI-ATFITLYYA-ARGWD--------GAALALTLFGVAFVGARLLFGNL----INRLGGL-------RVAIVSLL  287 (399)
T ss_pred             HHHHHHH-HHHHHHHHH-Hcccc--------cchHHHHHHHHHHHHHHHHHHHH----HHHhccH-------HHHHHHHH
Confidence            1111111 111111111 11110        11112222333333444443333    5555432       35666677


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHH
Q 045410          424 MAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSIS  503 (589)
Q Consensus       424 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  503 (589)
                      +..+++++..+..                 +.+..++..++.|++.+...+.......+.+|++.||++.|+++....+|
T Consensus       288 ~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (399)
T PRK05122        288 VEILGLLLLWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLS  350 (399)
T ss_pred             HHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            7777766555432                 33345556778888888888887788889999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          504 SYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       504 ~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      ..+++.+.+.+.+..                 ++.+.|.+.+++.+++.++.++..
T Consensus       351 ~~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        351 LGITGPLAGLVASWF-----------------GYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHc-----------------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998887532                 245677777777777766655553

>PRK10504 putative transporter; Provisional

Probab=99.94  E-value=2.6e-23  Score=225.35  Aligned_cols=179  Identities=11%  Similarity=0.051  Sum_probs=151.5

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +.|.++.+.+..++..+..+.+.+.++.+.. ++|.+..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   85 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLF   85 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence            3445677777888888888877777777764 7999999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+.++.                     +.+.++++|+++|++.+...|...+++.|.+|+      +.|++.+++
T Consensus        86 ~~~~~~~~~~~---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  138 (471)
T PRK10504         86 TLGSLFCALSG---------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR------EQYMAAMTF  138 (471)
T ss_pred             HHHHHHHHHhC---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH------HHHHHHHHH
Confidence            88888877755                     667789999999999999999999999999875      457788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      .+...++|..++|.+++++.+..|||+.|++......+..+......+
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            988999999999999999999999999999877665555544444333

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=2.4e-23  Score=220.08  Aligned_cols=375  Identities=12%  Similarity=0.099  Sum_probs=240.2

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      ..+.++.+.+..++...+.+...+.++.|+.+++|+|..+.+++.+.+.+...+++++.|+++||+ ||||+++.+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC   91 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence            344556666677777777777778889999999999999999999999999999999999999995 9999999998877


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+........+..             ...+.+.++++|+++|++.+...+...+++.|.+|+      ++|++++++
T Consensus        92 ~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~a~~~  152 (392)
T PRK12382         92 GLAGLAYLLAAILPVS-------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP------KHSGKVMSW  152 (392)
T ss_pred             HHHHHHHHhhhccccc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc------cccchhhhH
Confidence            7765543332111110             012677899999999999999888888999999876      346778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCC
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQ  266 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (589)
                      ++.+.++|..++|.+++++.+.+||++.+.+..+..++..   ... ++.++.+++++.                     
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~---------------------  207 (392)
T PRK12382        153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHAGE---------------------  207 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCccc---------------------
Confidence            8888999999999999999988999987665443322221   111 111111100000                     


Q ss_pred             CCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhH-HHHHHHHH
Q 045410          267 ASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAM-FPVWITGI  345 (589)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~  345 (589)
                      ++                                                 ..+     +   ..+..... ........
T Consensus       208 ~~-------------------------------------------------~~~-----~---~~~~~~~~~~~~~l~~~  230 (392)
T PRK12382        208 RP-------------------------------------------------SLW-----S---VVGLIWKPGLGLALQGV  230 (392)
T ss_pred             Cc-------------------------------------------------hHH-----H---HHHHHHHhHHHHHHHHH
Confidence            00                                                 000     0   00000000 00001111


Q ss_pred             HHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHH
Q 045410          346 FCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMA  425 (589)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~  425 (589)
                      .+..... +.+.+..+ .+.+        ..........+..++..++.++    +.+|+++|+       .+..+..+.
T Consensus       231 ~~~~~~~-~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~~-------~~~~~~~~~  289 (392)
T PRK12382        231 GFAVIGT-FVSLYFAS-KGWA--------MAGFTLTAFGGAFVLMRVLFGW----MPDRFGGVK-------VAIVSLLVE  289 (392)
T ss_pred             HHhHHHH-HHHHHHHh-cCCc--------hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCCe-------ehHHHHHHH
Confidence            1111111 11111111 1100        0111122223333444444444    366665442       456677777


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHH
Q 045410          426 ILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSY  505 (589)
Q Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~  505 (589)
                      .+++++..+..                 +.+...+...+.+++.+...+.......+.+|++.||++.|++++...+|+.
T Consensus       290 ~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  352 (392)
T PRK12382        290 TVGLLLLWLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG  352 (392)
T ss_pred             HHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            77766554432                 3334455667788888888888888889999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 045410          506 INSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       506 l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                      +++.+.+.+.|..      +           +...|.+.+++.+++.++.+..
T Consensus       353 ig~~~~g~l~~~~------g-----------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        353 VSGPLAGMLATSF------G-----------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHh------C-----------chHHHHHHHHHHHHHHHHHHhh
Confidence            9999999887632      1           3457777877777777665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=2.5e-23  Score=220.90  Aligned_cols=174  Identities=17%  Similarity=0.065  Sum_probs=147.6

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .+|..+.......+++....+...... +.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHH
Confidence            567777777778888877766655544 45567899999999999999999999999999999999 5999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++.+++.++.                     +.+.+++.|++.|++.+...+...+++.|.+|+      ++|++.++
T Consensus        90 ~~~~~~~~~~~~---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~  142 (406)
T PRK11551         90 FGLFSLATAQAW---------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP------RLRGTAVS  142 (406)
T ss_pred             HHHHHHHHHHhc---------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH------HHHHHHHH
Confidence            888888887765                     677889999999999999999999999999986      45788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      +++...++|..+++.+++.+.+..+|++.|++.+++.++..+.
T Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        143 LMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888889999998876554444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=2.1e-23  Score=227.21  Aligned_cols=402  Identities=14%  Similarity=0.074  Sum_probs=242.2

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      .|..+..+.+..++..+....+.+. .+.+.+++|.+..+.+|+.+.+.++..++.++.|+++|| +|||++++.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a-~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA-APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            3455555555666666654444444 445567999999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++++++++++                     +.+.++++|+++|+|.+...|.....+.+.++++     ++|++.+++
T Consensus        82 ~~~~~~~~~a~---------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~-----~~r~~~~g~  135 (495)
T PRK14995         82 GLASLAAAFSP---------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE-----KQRNMALGV  135 (495)
T ss_pred             HHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHH
Confidence            99999999977                     7788999999999999999988888888877542     468889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHH------HHHHHhcc
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKV------ITASCRKR  260 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  260 (589)
                      +....++|..+||.+++++.+++|||+.|++...+.++.+++..+..|+.+.++.++.+.......      .....++.
T Consensus       136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~  215 (495)
T PRK14995        136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTA  215 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999877665555544444434322111111111111000      00011110


Q ss_pred             ccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhH-HH
Q 045410          261 KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAM-FP  339 (589)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  339 (589)
                      ..    ..    +.....    ..       .-............. + .. ......+++.+++      +..... ..
T Consensus       216 ~~----~~----~~~~~~----~~-------~~~~~~~~l~~f~~~-e-~~-~~~p~~~~~lf~~------~~~~~~~~~  267 (495)
T PRK14995        216 LK----GF----LSLWVT----SL-------TLLTGALLLGLFIRT-Q-LA-ASRPMIDMRLFTH------RIILSGVVM  267 (495)
T ss_pred             cc----cC----CchHHH----HH-------HHHHHHHHHHHHHHH-H-hc-CCCCCcCHHHhCC------cccHHHHHH
Confidence            00    00    000000    00       000000000000000 0 00 0000111111111      111111 11


Q ss_pred             HHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHH
Q 045410          340 VWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRIT  419 (589)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~  419 (589)
                      .+.....++ ....+.+.+.....+.+.      ...+.......+...+..++.+++    .+|+++|       +.+.
T Consensus       268 ~~~~~~~~~-~~~~~~~~~lq~v~g~s~------~~ag~~~~~~~~~~~~~~~~~g~l----~~r~g~~-------~~~~  329 (495)
T PRK14995        268 AMTAMITLV-GFELLMAQELQFVHGLSP------LEAGMFMLPVMVASGFSGPIAGIL----VSRLGLR-------LVAT  329 (495)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHcCch-------HHHH
Confidence            111111111 111111122111122221      112222333344444555554444    6676543       3566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHH
Q 045410          420 IGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLS  499 (589)
Q Consensus       420 ~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~  499 (589)
                      .|+++..+++.++.....              ..+.+......++.|+|.+...+.....+.+.+|++.++.+.+++++.
T Consensus       330 ~g~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  395 (495)
T PRK14995        330 GGMALSALSFYGLAMTDF--------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMA  395 (495)
T ss_pred             HHHHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHH
Confidence            777777777765554321              123334455678889999888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 045410          500 LSISSYINSALVNIIHG  516 (589)
Q Consensus       500 ~~lg~~l~~~l~~~i~~  516 (589)
                      ..+|+.+|+.+.+.+.+
T Consensus       396 ~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        396 YELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=2.2e-23  Score=223.38  Aligned_cols=163  Identities=12%  Similarity=0.062  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIM  113 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~  113 (589)
                      .+...++..+..+.+...++.+ .+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~  105 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILF  105 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHH
Confidence            3344444444444444545444 56799999999999999999999999999999999 599999999999999999988


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV  193 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  193 (589)
                      .++.                     +++.+++.|++.|++.|...+...+++.|++|+      ++|++.+++++.+.++
T Consensus       106 ~~~~---------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~------~~rg~~~~~~~~~~~~  158 (434)
T PRK11663        106 GFSS---------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR------TERGGWWAIWNTAHNV  158 (434)
T ss_pred             HHHh---------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH------HHHHHHHHHHHHHHHH
Confidence            8876                     778888999999999999899999999999986      4588899999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHH
Q 045410          194 ALVVALTAVVYIQTNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       194 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~  225 (589)
                      |..+++.+.+++.+.+|||+.|++.++..++.
T Consensus       159 g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876654433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.4e-24  Score=218.63  Aligned_cols=405  Identities=12%  Similarity=0.058  Sum_probs=265.5

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHH---HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIAN---MTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY  101 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~  101 (589)
                      +.+.|.-+.++...++.+.+||-+.-.   ..+++.++.|+|.+|.|.+.+.+.+.+.++..+.|.++||. +.|+.+-+
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~   99 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence            333333488888999999999988754   46889999999999999999999999999999999999995 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      ++++..+..+++.+++                     +.+.+.+..++.|..+|.-.|.+..++..+|+.      ++|+
T Consensus       100 gLilsai~nil~Gfs~---------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr------~eRG  152 (448)
T COG2271         100 GLILSAIVNILFGFSP---------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR------KERG  152 (448)
T ss_pred             HHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc------cccC
Confidence            9999999999999987                     677888899999999999999999999999987      4588


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhc
Q 045410          182 SFFNWWYFSFTVALVVALTAV--VYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRK  259 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (589)
                      +..++++.+-|+|+.+.|.+.  +++..+.+||..|++++++.++..++.++..+.    .|+..-.+++.+        
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd----~Pqs~GLP~ie~--------  220 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD----RPQSEGLPPIEE--------  220 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCCHHH--------
Confidence            889999999999999999999  899988899999999998876665555544332    232211111100        


Q ss_pred             cccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHH-HHHhHH
Q 045410          260 RKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLK-LLVAMF  338 (589)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  338 (589)
                                  ..++..+                        ..++.    .++.....|+.+.+ .+...| ..+..+
T Consensus       221 ------------~~~d~~e------------------------~~~~~----~~~~~ls~~~i~~~-YVL~Nk~iW~la~  259 (448)
T COG2271         221 ------------YRGDPLE------------------------IYEEE----KENEGLTAWQIFVK-YVLKNKLIWLLAL  259 (448)
T ss_pred             ------------hhcCchh------------------------hhhhh----ccCCCccHHHHHHH-HHHcChHHHHHHH
Confidence                        0000000                        00000    00000111222221 111222 222333


Q ss_pred             HHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHH
Q 045410          339 PVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRI  418 (589)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i  418 (589)
                      ..++..++-+.+..+.+. ++.+..+++.      ....+...+...+.+.+..+.+++    +||+-+.++  .  ...
T Consensus       260 a~vfvYivR~gi~dW~p~-YL~e~k~~s~------~~a~~a~~lfE~agl~G~Ll~Gwl----SDklfkgrR--~--p~~  324 (448)
T COG2271         260 ANVFVYVVRYGINDWGPL-YLSEVKGFSL------VKANWAISLFEVAGLPGTLLAGWL----SDKLFKGRR--G--PMA  324 (448)
T ss_pred             HHHHHHHHHHHHhhhHHH-HHHHhcCCCH------HHHHHHHHHHHHHhhHHHHHHHHH----HHHhccccc--c--hHH
Confidence            334444444444333333 3334444443      335666677788888888888888    555432210  1  123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHH--HHHhhccCchhhHHHHHHH
Q 045410          419 TIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVM--EFLTTQLPESMRTVSGAVF  496 (589)
Q Consensus       419 ~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~--~~~~~~~P~~~rg~~~g~~  496 (589)
                      .+.+++..++++.+...+               ..+.+...  ..+..+|.....|...  ....|.+|++..|++.|+.
T Consensus       325 ~i~~~~i~~~~~~~w~~~---------------~~~~~l~~--~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~  387 (448)
T COG2271         325 LIFMLLITASLVLYWLAP---------------NGSYLLDA--ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV  387 (448)
T ss_pred             HHHHHHHHHHHHHHHcCC---------------CccHHHHH--HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence            333333444433333321               12333332  3333444444444422  2456999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          497 FLSLSI-SSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       497 ~~~~~l-g~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      .++..+ |++++....+.+.|..      +|.+           .|.++.+.++++.+++....
T Consensus       388 Glf~Yl~Ga~~a~~~~g~i~d~~------gW~g-----------~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         388 GLFAYLIGAALAGLPLGYIADTW------GWDG-----------GFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hhHHHHhhHHhcCCcceeeEecC------CCcc-----------hHHHHHHHHHHHHHHHHHHH
Confidence            999888 8889988888887653      6654           45555555555555555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=4.8e-23  Score=218.33  Aligned_cols=345  Identities=14%  Similarity=0.141  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +.++..+++..++.+.+.++++.|+.+++|++..+.|.+.+...+...+..+++|+++|| +|||++++.+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence            566678999999999999999999999999999999999999999999999999999999 5999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .+.+.+                     +.+.+++.|+++|++.+...|...+++.|.+|+      ++|++.+++.+...
T Consensus        92 ~~~~~~---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~  144 (400)
T PRK11646         92 TMAIAH---------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP------HQRGRFFSLLMMQD  144 (400)
T ss_pred             HHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHH
Confidence            888765                     678889999999999998889999999999886      45788999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCC
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNS  271 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (589)
                      ++|..+||.+++++. .++|++.|++.++..++..++..+..++.+. ++..++.   .                     
T Consensus       145 ~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~---~---------------------  198 (400)
T PRK11646        145 SAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPV---R---------------------  198 (400)
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhh---H---------------------
Confidence            999999999999998 6899999998776555444333332221100 0000000   0                     


Q ss_pred             ccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 045410          272 LYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAM  351 (589)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  351 (589)
                                                                    ..++    +..++.+ .+......   ..++...
T Consensus       199 ----------------------------------------------~~~~----~~~~~~~-~~~~~~~~---~~~~~~~  224 (400)
T PRK11646        199 ----------------------------------------------EGMT----RVLRDKR-FVTYVLTL---TGYYMLA  224 (400)
T ss_pred             ----------------------------------------------HHHH----HHHcCch-HHHHHHHH---HHHHHHH
Confidence                                                          0000    0000011 11111111   0111111


Q ss_pred             hcc---hhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 045410          352 DQQ---NTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILS  428 (589)
Q Consensus       352 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~  428 (589)
                      .+.   .+.+.... ..+.      ...+.+..++.+..+.....    ..+..+|+      .+..+.+..++++.+++
T Consensus       225 ~~~~~~~p~~~~~~-~~~~------~~~g~l~~~~~~~~~~~~~~----~~~~~~~r------~~~~~~~~~~~~~~~~~  287 (400)
T PRK11646        225 VQVMLMLPIMVNDI-AGSP------SAVKWMYAIEACLSLTLLYP----IARWSEKR------FRLEHRLMAGLLIMSLS  287 (400)
T ss_pred             HHHHHhhhhhHHhh-cCCc------hHHHHHHHHHHHHHHHHHHH----HHHHHHHh------cchhHHHHHHHHHHHHH
Confidence            111   11111111 1111      11112222222222222111    12222221      12233566777777777


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHH
Q 045410          429 LLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINS  508 (589)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~  508 (589)
                      ++++++.+                 +.+.++....+.+++.+...|...++..+.+|++.||+++|++++...+|..+|+
T Consensus       288 ~~~l~~~~-----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~  350 (400)
T PRK11646        288 MFPIGMVS-----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGY  350 (400)
T ss_pred             HHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcc
Confidence            76665543                 2334444556677888888888899999999999999999999999999999999


Q ss_pred             HHHHHhhhcc
Q 045410          509 ALVNIIHGLT  518 (589)
Q Consensus       509 ~l~~~i~~~~  518 (589)
                      .+.|.+.|.+
T Consensus       351 ~l~G~l~~~~  360 (400)
T PRK11646        351 IGGGWLFDLG  360 (400)
T ss_pred             cchHHHHHHH
Confidence            9999998753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.93  E-value=1.5e-22  Score=225.96  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           48 LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      +...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++.+++.++++++.          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            34556677778999999999999999999999999999999999 5999999999999999999988876          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +.+.++++|++.|++.|+..++..+++.|.+|+      +.|+..+++......+|.++++.++..+..
T Consensus       254 -----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~------~~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       254 -----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       678899999999999999999999999999986      457888888888889999999887766654


Q ss_pred             h-------------cchhHhHHHHHHHHHHHHHHHH
Q 045410          208 N-------------VSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       208 ~-------------~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      .             .+||+.|++.++..++.++..+
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~  352 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT  352 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            3             3588888877665555544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=3.1e-23  Score=219.46  Aligned_cols=176  Identities=18%  Similarity=0.190  Sum_probs=152.1

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      .+|+.+.++...++...+++.+.++++.|+++++|++..+.+++.+.+.+...++.++.|+++|| +|||++++++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence            45667777788999999999999999999999999999999999999999999999999999999 59999999999988


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+.+++                     +.+.++++|.+.+.+.+...++..++..|.+|+      ++|++.+++
T Consensus        84 ~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~  136 (395)
T PRK10054         84 ASGFIAIPLVN---------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS------TSKTKIFSL  136 (395)
T ss_pred             HHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------hHHHHHHHH
Confidence            88888888866                     667777888888888888888899999998875      457788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+...++|..++|.+++++.+ .+|+.+|++.+++.++.++...+
T Consensus       137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875 78999999877766655444333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=3.2e-23  Score=221.07  Aligned_cols=392  Identities=11%  Similarity=0.015  Sum_probs=239.7

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIM  113 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~  113 (589)
                      ++...++..++.......++.+. ++++.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++....
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            33445566665444445555554 56788999999999999999999999999999995 99999999888877776665


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV  193 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  193 (589)
                      ......+                ..+.+.+++.|++.|++.+...+...+++.|.+|+      ++|++..++.+...++
T Consensus       100 ~~~~~~~----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  157 (417)
T PRK10489        100 ALNAFLP----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR------ENLMQAGAITMLTVRL  157 (417)
T ss_pred             HHHHHcC----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH------HHHHHHHHHHHHHHhH
Confidence            4321000                01567788899999999888888889999998875      3467788888889999


Q ss_pred             HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCcc
Q 045410          194 ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLY  273 (589)
Q Consensus       194 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (589)
                      |..+||.+++.+.+..+|++.|++..+..++..+..+. .++.   +++.++.                   +++     
T Consensus       158 g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~~~-------------------~~~-----  209 (417)
T PRK10489        158 GSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPAL---PPPPQPR-------------------EHP-----  209 (417)
T ss_pred             HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCC---CCCCccc-------------------ccc-----
Confidence            99999999999998889999998876655544433322 2211   1100000                   000     


Q ss_pred             CCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 045410          274 DPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQ  353 (589)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  353 (589)
                                          ..+..+                   .+     +.....+.+...+...+....... ...
T Consensus       210 --------------------~~~~~~-------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~  244 (417)
T PRK10489        210 --------------------LRSLLA-------------------GF-----RFLLASPVVGGIALLGGLLTMASA-VRV  244 (417)
T ss_pred             --------------------hHHHHH-------------------HH-----HHHHcChHHHHHHHHHHHHHHHHh-HHH
Confidence                                000000                   00     000000011111100011111111 111


Q ss_pred             chhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 045410          354 QNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAG  433 (589)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~  433 (589)
                      +.+.+.....+.+..      ..+.+.....++.+++..+.+++    .+|.       ++.+.+..+.++..++++++.
T Consensus       245 ~~p~~~~~~~g~~~~------~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~  307 (417)
T PRK10489        245 LYPALADEVWQMGAA------QIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFG  307 (417)
T ss_pred             hhHHHHHhccCCChh------HhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHH
Confidence            111111111111111      12222333334444444443332    3332       222355666666666665554


Q ss_pred             HHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          434 FVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNI  513 (589)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~  513 (589)
                      +.+                 +.+..+....+.+++.+...+..+++..+..|++.||++.|++++...+|..+++.+.|.
T Consensus       308 ~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        308 LMP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             ccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence            322                 334445566667777777777778899999999999999999999999999999999998


Q ss_pred             hhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 045410          514 IHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKES  573 (589)
Q Consensus       514 i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (589)
                      +.+..+                 +...+...+++.++..++.+...+++|+.+.++.+++
T Consensus       371 l~~~~g-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        371 LGAMMT-----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHhc-----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            876321                 2235666666666666666666677777666666543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=2.2e-22  Score=213.65  Aligned_cols=383  Identities=15%  Similarity=0.089  Sum_probs=240.0

Q ss_pred             CCchH-HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhH-----HHHHHHHHHHHHHhhhhhhhHHhhhcccchHHH
Q 045410           26 GGWRS-IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGIL-----LVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTL   99 (589)
Q Consensus        26 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l   99 (589)
                      .+|++ ........++...+++...+.++.|++ ++|.+..+     .+++.+++.+...++.++.|+++||+ |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~   87 (408)
T PRK09874         10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIML   87 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHH
Confidence            34554 333445677777777777788888875 58888655     48889999999999999999999995 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchh
Q 045410          100 LYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQ  179 (589)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (589)
                      +.+.++..++.+++.+..                     +.+.+++.|++.|++.+ ..+...+++.|.+|+      ++
T Consensus        88 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~------~~  139 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQ---------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR------NK  139 (408)
T ss_pred             HHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH------hh
Confidence            999999888888877765                     67789999999999865 467778888898876      34


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhc
Q 045410          180 LESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRK  259 (589)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (589)
                      |++..++.+...++|..++|.+++.+.+..+|++.|++..++.++..+..+...++.+  ++.+++.....+        
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------  209 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHMR--------  209 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHHH--------
Confidence            6778888888999999999999999999899999998877765555444433332211  010000000000        


Q ss_pred             cccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHH
Q 045410          260 RKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFP  339 (589)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (589)
                                                             +.....            +            +.+.....+.
T Consensus       210 ---------------------------------------~~~~~~------------~------------~~~~~~~~~~  226 (408)
T PRK09874        210 ---------------------------------------EVVTSL------------K------------NPKLVLSLFV  226 (408)
T ss_pred             ---------------------------------------HHHHhC------------c------------CCchHHHHHH
Confidence                                                   000000            0            0000000000


Q ss_pred             HHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHH
Q 045410          340 VWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRIT  419 (589)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~  419 (589)
                      .   ............+....+...............+.+..+..+..++..+..+++    .+|+++|       +.+.
T Consensus       227 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l----~dr~g~~-------~~~~  292 (408)
T PRK09874        227 T---TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL----GDRIGPE-------KILI  292 (408)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccc-------hhHH
Confidence            0   011111111111111111111000000000001111222233334444443333    6665444       3555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHH
Q 045410          420 IGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLS  499 (589)
Q Consensus       420 ~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~  499 (589)
                      .++.+..++++...+..                 +.+.+.+..++.+++.+...+...++..+..|++.||+..++++..
T Consensus       293 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (408)
T PRK09874        293 TALIFSVLLLIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF  355 (408)
T ss_pred             HHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence            66666655555444332                 3334455667788888888898889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          500 LSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       500 ~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      ..+|..+++.+.+.+.+..                 ++...|.+.+++.+++.++.++..
T Consensus       356 ~~~g~~~gp~~~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        356 RDIGNVTGPLMGAAISANY-----------------GFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHhhHHHHHHHHhhc-----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887522                 245678888888887777665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=5.8e-22  Score=215.75  Aligned_cols=175  Identities=16%  Similarity=0.108  Sum_probs=128.3

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhH-HHH-----HHHHHHHHHHhhhhhhhHHhhhcccchHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGIL-LVN-----VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY  101 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~  101 (589)
                      ++.++...+..+++.+.++ +..+..+++.+.++.+..+ ..+     +.++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4445555567777777644 5666777888887543322 122     24677788999999999999995 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      +.+++++++++++++++...+             ....+.+++++|+++|++.|+..+...+++.|.+|++      +|+
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~-------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg  153 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATI-------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRG  153 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHH-------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCc
Confidence            999999999999997622110             0001235899999999999999999999999999873      366


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHhHHHHHHHHH
Q 045410          182 SFFNWWYFSFTVALVVALTAVVYIQ--------TNVSWILGFAIPTGCFF  223 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~  223 (589)
                      ...++...+.++|..+++.+...+.        ..+|||+.|++.+...+
T Consensus       154 ~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        154 FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            6777777777788887776654443        25799999998665433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=1.5e-22  Score=212.61  Aligned_cols=156  Identities=18%  Similarity=0.157  Sum_probs=137.1

Q ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           48 LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      ..+...+++.+++|+++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..+++++.          
T Consensus        12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~----------   80 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG----------   80 (399)
T ss_pred             hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc----------
Confidence            344555668889999999999999999999999999999999995 999999999999999999988876          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +.+.++++|++.|++.+...+...+++.|.+|+      ++|++.+++.+...++|..+++.+++++.+
T Consensus        81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA------SERATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH------HHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence                       678899999999999999999999999999986      568889999999999999999999999999


Q ss_pred             hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          208 NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ..+|++.|++.++..++..+..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       144 HFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             hCCchHHHHHHHHHHHHHHHHhhh
Confidence            899999998877665554444333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1e-22  Score=216.63  Aligned_cols=179  Identities=13%  Similarity=0.087  Sum_probs=148.7

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      |.+|+..+.+.+..+++..... ...+..+.+++++|+++.+.+++.+++.+++.+++++.|+++|| +|||+++..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHH
Confidence            3467766665555555555544 34455568899999999999999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++.++.+++++++                     +.+.+++.|+++|++.+...|....++.|.+|+      ++|++.+
T Consensus        82 ~~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~rg~~~  134 (412)
T TIGR02332        82 LWGIASTATMFAT---------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA------YFRARAN  134 (412)
T ss_pred             HHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH------HHHHHHH
Confidence            9999999999877                     677899999999999999999999999999986      4588899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------hcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          185 NWWYFSFTVALVVALTAVVYIQT------NVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ++++....+|..+++.+++++.+      ..|||+.|++.++..++..++.++.
T Consensus       135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       135 ALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998874      3699999998776655544444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.93  E-value=2.5e-22  Score=217.63  Aligned_cols=175  Identities=9%  Similarity=-0.020  Sum_probs=131.3

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +++.+.......++.....+.+. .+.+++.+++|++..+.+++.+.+.+++.++.+++|+++|| +|||+++..+.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            34444444445555555544443 34456778999999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      +++.++++++.                     +.+.+++.|+++|++.+... ....++.|.+|+      +.|++++++
T Consensus       112 ~~~~~~~~~~~---------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~------~~rg~a~g~  163 (476)
T PLN00028        112 APAVFCMSLVS---------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG------KIVGTANGI  163 (476)
T ss_pred             HHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh------hheeHHHHH
Confidence            99888888866                     56778889999999988654 355678899986      347778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---------hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQT---------NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~---------~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+...++|..+++.+.+.+..         ..|||+.|++.+++.++..+..++
T Consensus       164 ~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        164 AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777666655432         148999999877766555444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=2.1e-22  Score=210.48  Aligned_cols=154  Identities=17%  Similarity=0.078  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCC
Q 045410           49 IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLT-ASIPKLRPPDC  127 (589)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~~~~~~~  127 (589)
                      ..+..+.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+ |||+++..+.+....+.. .... .          
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~~----------   77 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDPF----------   77 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHhc----------
Confidence            44455566779999999999999999999999999999999995 999887655544444432 2232 3          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +.+.++++|+++|++.+. .......++|.+|+      ++|++.+++.+.+.++|..+++.+++++.+
T Consensus        78 -----------~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~  139 (368)
T TIGR00903        78 -----------NYEWLLACQLLAALGQPF-LLNAFAPAASQIRE------ERRDLVISLLSFAMYLGIIFALAAGLKIYT  139 (368)
T ss_pred             -----------cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       677899999999999986 45556667898886      468889999999999999999999999999


Q ss_pred             hcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          208 NVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      .+|||+.|++.+++.++..++.++.
T Consensus       140 ~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903       140 AGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988666655554444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.5e-22  Score=201.72  Aligned_cols=377  Identities=13%  Similarity=0.086  Sum_probs=252.9

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      ++..|..++.+.+..|.....=+.... +-+-+.+++|+|..++|++++.|.++..++.|+...++|| +.||++++...
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHH
Confidence            345677777777777777776665444 4445678999999999999999999999999999999999 59999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      .+++++.+++++++                     +++.+.++|++.|+..|.+.+...++..++.|++      +|+++
T Consensus        86 ~lFi~~n~l~alAp---------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~A  138 (394)
T COG2814          86 ALFIVSNLLSALAP---------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRA  138 (394)
T ss_pred             HHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhH
Confidence            99999999999988                     8899999999999999999999999999999984      47788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCC--ChHHHHHHHHHHHHhccc
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQG--SVFVDMAKVITASCRKRK  261 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  261 (589)
                      +++...+.+++.++|..++.++.+.+|||..|+....+.++.++..+...|  +++.+++  .+..+..+    .+|   
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~----~l~---  209 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLR----LLR---  209 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHH----Hhc---
Confidence            999999999999999999999999999999999988887777776666555  1111110  00000000    000   


Q ss_pred             cccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHH
Q 045410          262 VNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVW  341 (589)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  341 (589)
                                                                                          +.+....+...+
T Consensus       210 --------------------------------------------------------------------~p~v~~~l~~t~  221 (394)
T COG2814         210 --------------------------------------------------------------------RPGVLLGLLATF  221 (394)
T ss_pred             --------------------------------------------------------------------CchHHHHHHHHH
Confidence                                                                                001111122222


Q ss_pred             HHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHH
Q 045410          342 ITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIG  421 (589)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g  421 (589)
                      +.....+..|.+..+ +..+..+++..      ..++......++.+++..+.+++    .||        +.++.+...
T Consensus       222 l~~~g~F~~ftYi~P-~L~~v~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr--------~~~~~l~~~  282 (394)
T COG2814         222 LFMTGHFALYTYIRP-FLESVAGFSVS------AVSLVLLAFGIAGFIGNLLGGRL----ADR--------GPRRALIAA  282 (394)
T ss_pred             HHHcchhhhHHhHHH-HHHHccCCCHh------HHHHHHHHHHHHHHHHHHHHhhh----ccc--------cchhHHHHH
Confidence            222222222222222 11222222221      12333333344444444443333    444        223356666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccC--chhhHHHHHHHHHH
Q 045410          422 ILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP--ESMRTVSGAVFFLS  499 (589)
Q Consensus       422 ~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P--~~~rg~~~g~~~~~  499 (589)
                      +.+.++.++.+.+..                .+.+..+....+.++...   |..+.+..+.++  ++.+..+++++...
T Consensus       283 ~~l~a~~~l~l~~~~----------------~~~~~~~~~~~~wg~a~~---~~~~~~~~~~a~~~p~~~~~a~sl~~aa  343 (394)
T COG2814         283 LLLLALALLALTFTG----------------ASPALALALLFLWGFAFS---PALQGLQTRLARLAPDAADLAGSLNVAA  343 (394)
T ss_pred             HHHHHHHHHHHHHhc----------------chHHHHHHHHHHHHHHhh---hhhhHHHHHhcccCCCchHHHHHHHHHH
Confidence            677777777666553                133333444444444443   444444444444  56799999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045410          500 LSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACR  561 (589)
Q Consensus       500 ~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  561 (589)
                      .++|..+|..++|.+.|..                 ++....++.+...++++++.+...+.
T Consensus       344 ~nlgia~GA~lGG~v~~~~-----------------g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         344 FNLGIALGAALGGLVLDAL-----------------GYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhh-----------------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998732                 23455667777777776666555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=7.4e-22  Score=208.81  Aligned_cols=172  Identities=11%  Similarity=0.122  Sum_probs=148.2

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +..|+.+..+....++.....|.....++. +.+++|+++.+.++..+++.++..++.++.|+++|| +||||+++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHH
Confidence            447887777776666666666655555555 567899999999999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +.+++.+++.++.                     +.+.+++.|+++|++.+...+...+++.|.+|+      ++|++..
T Consensus        94 ~~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~------~~~~~a~  146 (394)
T PRK10213         94 LLTLSCLLVSFAN---------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP------RTVPKAL  146 (394)
T ss_pred             HHHHHHHHHHHHC---------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH------hHHHHHH
Confidence            9999998888866                     788899999999999999999999999999986      4577889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~  225 (589)
                      ++.....++|..++|.+++++.+.+|||+.|++.+++.++.
T Consensus       147 ~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~  187 (394)
T PRK10213        147 SVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLC  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=1.1e-22  Score=220.70  Aligned_cols=152  Identities=14%  Similarity=0.062  Sum_probs=121.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCCCCCCCch
Q 045410           60 YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASI-PKLRPPDCTGAQCPQPEGW  138 (589)
Q Consensus        60 lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~  138 (589)
                      +|.++.+.+++.+++.++..++++++|+++|| +||||+++.+.+++.++.+.+++.... .....          .+..
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~----------~~~~  118 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP----------DNTG  118 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccc----------cchh
Confidence            38999999999999999999999999999999 599999999999999888877763200 00000          0112


Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcc
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ--------TNVS  210 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g  210 (589)
                      ....++++|+++|++.|...+...++++|++|+      ++|++.+++...+..+|..+++.++..+.        +.+|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            456788999999999999999999999999987      45778899988888999999887765543        3468


Q ss_pred             hhHhHHHHHHHHHHHHHH
Q 045410          211 WILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~  228 (589)
                      ||+.|++.++..++..+.
T Consensus       193 Wr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        193 WRYMFASEAIPALLFLML  210 (479)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999877666555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=2.9e-22  Score=211.94  Aligned_cols=367  Identities=10%  Similarity=-0.001  Sum_probs=230.1

Q ss_pred             HHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 045410           37 NETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLT  116 (589)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~  116 (589)
                      +.+..+..++.+. .+.+.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.++++++
T Consensus        17 ~~~~~~~~~~~~~-~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         17 IGLNMRPLLTSVG-PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             HHHHcchhhhccc-hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC
Confidence            3333333334444 444556789999999999999999999999999999999995 99999999999999999999998


Q ss_pred             hcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 045410          117 ASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALV  196 (589)
Q Consensus       117 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (589)
                      +                     +++.++++|+++|++.+...+....++.|.+|+       +|++.++.+..+.++|..
T Consensus        95 ~---------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~  146 (393)
T PRK09705         95 P---------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGG  146 (393)
T ss_pred             c---------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHH
Confidence            7                     667799999999999999999999999998862       266788888888899999


Q ss_pred             HHHHHHHHHHhhc-chhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCC
Q 045410          197 VALTAVVYIQTNV-SWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDP  275 (589)
Q Consensus       197 ~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (589)
                      +++.+++++.++. +||..+.+.++..++.+...+...++    +|++++                   +++.     . 
T Consensus       147 ~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~-----~-  197 (393)
T PRK09705        147 LGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH-------------------KTTT-----T-  197 (393)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc-------------------CCCc-----C-
Confidence            9999999988875 79988765444433332222221111    111000                   0000     0 


Q ss_pred             CCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcch
Q 045410          276 PLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQN  355 (589)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  355 (589)
                      .                                        ...+        .+.+.....+........++......+
T Consensus       198 ~----------------------------------------~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp  229 (393)
T PRK09705        198 P----------------------------------------VRVV--------FTPRAWTLGVYFGLINGGYASLIAWLP  229 (393)
T ss_pred             C----------------------------------------cccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                                        0000        001111111111111122222222222


Q ss_pred             hhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045410          356 TIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFV  435 (589)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~  435 (589)
                      ... .+ .+.+.      ...+....+..++.+++..+.+++    .||.++|       +.+.+++.+..++.+++...
T Consensus       230 ~~l-~~-~g~s~------~~ag~~~~~~~i~~i~g~~~~g~l----~~r~~~~-------~~~~~~~~l~~~~~~~~~~~  290 (393)
T PRK09705        230 AFY-IE-IGASA------QYSGSLLALMTLGQAAGALLMPAM----ARHQDRR-------KLLMLALVLQLVGFCGFIWL  290 (393)
T ss_pred             HHH-HH-cCCCh------hhhhHHHHHHHHHHHHHHHHHHHH----Hhhccch-------HHHHHHHHHHHHHHHHHHHc
Confidence            222 11 12221      112333334444455555554443    6665433       35566766766666554432


Q ss_pred             HHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccC-chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          436 ERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP-ESMRTVSGAVFFLSLSISSYINSALVNII  514 (589)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  514 (589)
                      .               . +...+  ...+.+++.+...|.......+..+ ++.+++..++.+....++..+++.+.+.+
T Consensus       291 ~---------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        291 P---------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             c---------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2               1 11111  1234566666667777767677774 68899999999999999999999999999


Q ss_pred             hhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045410          515 HGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFV  563 (589)
Q Consensus       515 ~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~  563 (589)
                      .|..+                ++...|++.+++.++..+..+.+.+|++
T Consensus       353 ~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        353 RSISG----------------NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             HHHhC----------------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            87432                1345677777777777666666655544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=2.6e-22  Score=212.35  Aligned_cols=172  Identities=13%  Similarity=0.132  Sum_probs=147.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      .+.+|+....+.+..+.+.+..+.+.. ..+.+.+++|+++.+.+++.+++.++..++.++.|+++||+ |||++++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            456788877777888888887665544 44566789999999999999999999999999999999995 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      ++..++.+++.++.                     +.+.+++.|++.|++.+...+...+++.|.+|+      ++|++.
T Consensus        85 ~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~~~~~  137 (405)
T TIGR00891        85 VLFSAGTLACGFAP---------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK------HLRNKA  137 (405)
T ss_pred             HHHHHHHHHHHHhc---------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh------hhhhHH
Confidence            99999998888866                     677899999999999999999999999999986      347788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHhHHHHHHHHHH
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQTNVS--WILGFAIPTGCFFL  224 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~i  224 (589)
                      +++++...++|..+++.+++.+.+..+  ||+.|++..+..++
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF  180 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            999999999999999999999888766  99998876544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=2.8e-22  Score=208.76  Aligned_cols=357  Identities=11%  Similarity=0.077  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIM  113 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~  113 (589)
                      ++...++..++.......++.|.. +++.++.+.+++.+++.++..++.++.|+++||+ ||||+++.+.++..++..+.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            344666666666666666777765 5899999999999999999999999999999995 99999999999888888777


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV  193 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  193 (589)
                      .+....+.                .+.+.++++|++.|++.+...+...+++.|.+|+      ++|++.+++.+...++
T Consensus        82 ~~~~~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  139 (365)
T TIGR00900        82 PFVALLGG----------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE------EQLTQANSLSQAVRSL  139 (365)
T ss_pred             HHHHHcCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHhHHHHHHHH
Confidence            76542211                2677899999999999999999999999999986      4588899999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHH-HHHHHHHHHHhccccccCCCCCCCc
Q 045410          194 ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFV-DMAKVITASCRKRKVNLGQASGNSL  272 (589)
Q Consensus       194 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  272 (589)
                      |..++|.+++++.+..||++.|++.++..++..+..+...++.+++ ++.++.+ +..+                     
T Consensus       140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------  197 (365)
T TIGR00900       140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLR---------------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHH---------------------
Confidence            9999999999999989999999887665554444333322111000 0000000 0000                     


Q ss_pred             cCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHH-HHHHHHHHHHhh
Q 045410          273 YDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFP-VWITGIFCFLAM  351 (589)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  351 (589)
                                             +..+                   .++    ...++ +.+..... .++....+....
T Consensus       198 -----------------------~~~~-------------------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~  230 (365)
T TIGR00900       198 -----------------------DTRE-------------------GIK----FVLKN-PLLRTLLLLALLFNLVFAPAI  230 (365)
T ss_pred             -----------------------HHHh-------------------HHH----HHHcC-cHHHHHHHHHHHHHHHHHHHH
Confidence                                   0000                   000    00000 11111111 111111111111


Q ss_pred             hcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 045410          352 DQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLV  431 (589)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~  431 (589)
                      ....+.+.....+.+.      ...+.......++.++...+.++    +.+|.++|       +.+..+..+.++++++
T Consensus       231 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-------~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       231 VALFPYVQSKYLGRGS------THYGWVLAAFGLGALLGALLLGL----LGRYFKRM-------ALMTGAIFVIGLAILV  293 (365)
T ss_pred             HHHhHHHHHHHhCCch------HHHHHHHHHHHHHHHHHHHHHHH----HHHHhchh-------HHHHHHHHHHHHHHHH
Confidence            1111222111111111      11222233333444444444333    35554332       3555666666666665


Q ss_pred             HHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          432 AGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALV  511 (589)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~  511 (589)
                      ..+..               + +.+...+..++.+++.+...+...++..+.+|++.|+++.|+.++...++..+++.+.
T Consensus       294 ~~~~~---------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       294 VGLTP---------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHhhc---------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55532               1 2445566778888988888999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 045410          512 NIIHG  516 (589)
Q Consensus       512 ~~i~~  516 (589)
                      +.+.|
T Consensus       358 g~l~~  362 (365)
T TIGR00900       358 GPLAD  362 (365)
T ss_pred             HHHHH
Confidence            98875

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=4.5e-22  Score=214.45  Aligned_cols=172  Identities=14%  Similarity=0.007  Sum_probs=130.4

Q ss_pred             HHHHHHHHHhHhhh---HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           35 LGNETFEKLASMSL---IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        35 ~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +...++....+|..   ..+..+|+.++ |+++.+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~  108 (452)
T PRK11273         31 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVML  108 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHH
Confidence            33444444444433   23455678777 9999999999999999999999999999999 5999999999999999888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .+++.....                 .+.+.+++.|++.|++.+...+.....+.|++|+      ++|++.+++++.+.
T Consensus       109 ~~~~~~~~~-----------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~  165 (452)
T PRK11273        109 FMGFVPWAT-----------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAH  165 (452)
T ss_pred             HHHhhhccc-----------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh------HHHHHHHHHHHHHH
Confidence            887753111                 1566788899999999999888888899999886      45888899988888


Q ss_pred             HHHHH-HHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          192 TVALV-VALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       192 ~~g~~-~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ++|+. .+|+++..+....+||+.|++.+++.++..++.++
T Consensus       166 ~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        166 NVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            88864 45554434434458999999877655554433333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=6.4e-22  Score=216.10  Aligned_cols=179  Identities=11%  Similarity=0.030  Sum_probs=133.1

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTK-----YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY  101 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~  101 (589)
                      +++....+....+.+......+...++ .+.++     .+.++.+.+++.+.+.++..++.++.|+++|| +|||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHH
Confidence            334444444455555555433333333 33322     34567788999999999999999999999999 599999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      +.+++.++.++++++.+...               ..+.+.++++|+++|++.|...+..+.++.|.+|+      +.|+
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~------~~Rg  150 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSP---------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK------KWRG  150 (502)
T ss_pred             HHHHHHHHHHHHHHccCccc---------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh------hhHH
Confidence            99999999988887541000               01367899999999999999999999999999997      4588


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hcchhHhHHHHHHHHHHHHHH
Q 045410          182 SFFNWWYFSFTVALVVALTAVVYIQT-----------------------NVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~l~~-----------------------~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      +..++.+....+|..+++.++.++..                       .++||+.|.+..+..++.++.
T Consensus       151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF  220 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999888766532                       247999998776655544333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=1.6e-22  Score=218.36  Aligned_cols=143  Identities=21%  Similarity=0.225  Sum_probs=120.6

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHH
Q 045410           62 MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLS  141 (589)
Q Consensus        62 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  141 (589)
                      .+..+.+++.+++.++..++.++.|+++|| +|||++++.+.+++.++..++.+....                  .+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  128 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFA------------------LSVE  128 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccc------------------cchH
Confidence            338999999999999999999999999999 599999999999999998888765411                  1346


Q ss_pred             HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHhhcchhHhHHHH
Q 045410          142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV---VYIQTNVSWILGFAIP  218 (589)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~g~~~~f~~~  218 (589)
                      .++++|+++|++.+...+...+++.|.+|+      +.|++.+++++.+.++|..+++.++   +...+..+||+.|++.
T Consensus       129 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~  202 (481)
T TIGR00879       129 MLIVGRVLLGIGVGIASALVPMYLSEIAPK------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ  202 (481)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHccCCh------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence            799999999999999999999999999986      3477789999999999999999988   6665678999999986


Q ss_pred             HHHHHHHHHHH
Q 045410          219 TGCFFLSIVVF  229 (589)
Q Consensus       219 ~~~~~i~~~~~  229 (589)
                      ++..++.++..
T Consensus       203 ~~~~~~~~~~~  213 (481)
T TIGR00879       203 LIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHH
Confidence            65555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.92  E-value=1.5e-22  Score=218.21  Aligned_cols=151  Identities=14%  Similarity=0.074  Sum_probs=126.2

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 045410           52 MTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQ  131 (589)
Q Consensus        52 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  131 (589)
                      +.+.+.+++|.+..+.+++.+.+.+...++.++.|+++|| +|||++++.+.++..++.++++++.              
T Consensus        41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------------  105 (455)
T TIGR00892        41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS--------------  105 (455)
T ss_pred             hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh--------------
Confidence            3455668999999999999999999999999999999999 5999999999999999998888866              


Q ss_pred             CCCCCchhHHHHHH-HHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045410          132 CPQPEGWQLSILYA-GLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       132 ~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                             +.+.+++ .|++.|++.+...+...+++.+.++       ++|++..++.+.+.++|..++|.+++++.+.+|
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence                   5555654 5688999998776777788888875       247788999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHH
Q 045410          211 WILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ||+.|++.+++.++..+..++
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999987766555444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=9e-23  Score=220.82  Aligned_cols=181  Identities=12%  Similarity=0.004  Sum_probs=137.7

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhH---HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLI---ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      ..|..+.++...++..+..|...   ....+.+.+++|+++.+.|++.+.+.+++.++++++|+++||+ |||+++..+.
T Consensus        23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~  101 (467)
T PRK09556         23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLL  101 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHH
Confidence            33444545555555555545333   3345667889999999999999999999999999999999995 9999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      ++++++.+.+++....                ...+.+.+++.|+++|++.+...|...+++.|++|++      +|++.
T Consensus       102 ~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a  159 (467)
T PRK09556        102 ILSAICMLGFGASLGS----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRF  159 (467)
T ss_pred             HHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeee
Confidence            8888877766653100                0126788999999999999999999999999999973      46677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc---chhHhHHHHHHHHHHHHHHHH
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQTNV---SWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      ++++..+.++|..+++.+..++.+..   +|+..|.+.+++.++..++.+
T Consensus       160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence            88888889999999998887776643   588888776665544433333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=1.9e-22  Score=210.76  Aligned_cols=354  Identities=11%  Similarity=0.072  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 045410           49 IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT  128 (589)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  128 (589)
                      .+.+.+++.+++|++..+.+++.+++.++..+++++.|+++|| +|||+++..+.++..++.+.+++++           
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~-----------   89 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD-----------   89 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH-----------
Confidence            4556778888999999999999999999999999999999999 5999999999999999999999887           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          129 GAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN  208 (589)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  208 (589)
                                +.+.++++|++.|++.+...+.....+.+.+|+       +|++..+++..+.++|..+++.+.+.+.+.
T Consensus        90 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        90 ----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             ----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence                      788899999999999998888888888888763       366788888888889988776677777777


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCcccccccccc
Q 045410          209 VSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTK  288 (589)
Q Consensus       209 ~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (589)
                      .+||+.|++.+++.++..+..+...++.++++.+ +                +.   +..       .            
T Consensus       153 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~---~~~-------~------------  193 (377)
T TIGR00890       153 EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIK-T----------------NI---EVS-------V------------  193 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHheecCchhccc-c----------------Cc---ccc-------h------------
Confidence            8999999987776655544433332211100000 0                00   000       0            


Q ss_pred             CCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccc
Q 045410          289 LPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKR  368 (589)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (589)
                          +..+.                      +     +..++. .........................+. +..+.+. 
T Consensus       194 ----~~~~~----------------------~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  239 (377)
T TIGR00890       194 ----KDYTV----------------------W-----EMLRTP-QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSD-  239 (377)
T ss_pred             ----hhhhH----------------------H-----HHHcCc-cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCH-
Confidence                00000                      0     000000 011111111111111100111111111 1111111 


Q ss_pred             cCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 045410          369 FGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGS  448 (589)
Q Consensus       369 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~  448 (589)
                           .....+..+..+..++..++.+++    .||+++|       +.+.++..+..++.+++.+..            
T Consensus       240 -----~~~~~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~------------  291 (377)
T TIGR00890       240 -----GFLVLAVSISSIFNGGGRPFLGAL----SDKIGRQ-------KTMSIVFGISAVGMAAMLFIP------------  291 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh-------hhhhHHHHHHHHHHHHHHHcc------------
Confidence                 112233344445555555665555    5665443       245667777777766555432            


Q ss_pred             CCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Q 045410          449 FESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLG  528 (589)
Q Consensus       449 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~  528 (589)
                         .......+....+.+++.+...+....+..|.+|++.|+++.|+.+....+|+.+++.+.+.+.+..          
T Consensus       292 ---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------  358 (377)
T TIGR00890       292 ---MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------  358 (377)
T ss_pred             ---cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence               1122222233445555555556666788899999999999999999999999999999999887532          


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHH
Q 045410          529 GTDLNKDTLDYFYFTIAALEVVNL  552 (589)
Q Consensus       529 ~~~~~~~~~~~~f~~~a~~~~~~~  552 (589)
                             ++.+.|.+.+++.++++
T Consensus       359 -------g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       359 -------GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             -------chhhHHHHHHHHHHHhc
Confidence                   13456666666665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.9e-21  Score=206.69  Aligned_cols=158  Identities=15%  Similarity=0.058  Sum_probs=130.5

Q ss_pred             HhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045410           43 LASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKL  122 (589)
Q Consensus        43 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~  122 (589)
                      ++...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||+++.+.++..++...+.++.     
T Consensus        27 ~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----   99 (406)
T PRK15402         27 IANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ-----   99 (406)
T ss_pred             hhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc-----
Confidence            33333444444 45678999999999999999999999999999999995 999999999999999888887766     


Q ss_pred             CCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 045410          123 RPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV  202 (589)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  202 (589)
                                      +.+.+++.|+++|++.+...+...+++.|.+|+      +.|.+.+++.+....+|..++|.++
T Consensus       100 ----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~i~  157 (406)
T PRK15402        100 ----------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE------ADAIKITALMANVALLAPLLGPLVG  157 (406)
T ss_pred             ----------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            667789999999999998888999999999986      3355667777777788999999999


Q ss_pred             HHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          203 VYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       203 ~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      +++.+..+||+.|++.++..++..+..
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            999988899999988776655554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=1.7e-21  Score=208.75  Aligned_cols=173  Identities=13%  Similarity=0.167  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC---CchhHHHHHHHHH---HHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYN---MDGILLVNVVSIW---GGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~---~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +....+..+++.+..+. .+++.+++.++++   .+..+.+.+.+++   .++..++.+++|+++||+ ||||++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence            33333456666666444 6777788888874   5566544444444   444459999999999995 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +++++++.++++++....             ...++..+++.|+++|++.|...|...+++.|.+|++      +|++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~  162 (432)
T PRK10406        102 MMCFGSLVIACLPGYETI-------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYA  162 (432)
T ss_pred             HHHHHHHHHhhcCCchhH-------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHH
Confidence            999999999886632110             0013457899999999999999999999999999873      366677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------hhcchhHhHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQ--------TNVSWILGFAIPTGCFFL  224 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~i  224 (589)
                      ++.+.+.++|..+++.+...+.        +.+|||++|++.++..++
T Consensus       163 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        163 SFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            7777788888888877655544        257999999986665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=1.1e-21  Score=205.75  Aligned_cols=170  Identities=13%  Similarity=0.082  Sum_probs=134.2

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH-HHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY-GSIASFLGMGIMT  114 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~-~~~~~~~~~~~~~  114 (589)
                      +..++..++.....+.++.|+.+++|.++.+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            457778888888889999999999999999999999999999999999999999995 99987665 4555556666777


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      +++                     +++.+++.|++++.+.+...|...++..|..|++.    +.+....+..+...++|
T Consensus        83 ~~~---------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g  137 (375)
T TIGR00899        83 WNR---------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLA  137 (375)
T ss_pred             hcc---------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHH
Confidence            655                     66778888988888878788888888888765421    12223356667778899


Q ss_pred             HHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          195 LVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ..++|.+++++.+.++||+.|++.++..++..+..++
T Consensus       138 ~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       138 WVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999899999999877765555444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.92  E-value=1.3e-21  Score=209.96  Aligned_cols=178  Identities=11%  Similarity=0.109  Sum_probs=129.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhc--CCchhHHHHHH-----HHHHHHHHhhhhhhhHHhhhcccch
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKY--NMDGILLVNVV-----SIWGGSSSLTAIPGALLSDTYLGRF   96 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr   96 (589)
                      ...++|..+...+..+++......+....+.++.+++  +.++.+ +++.     ++..++..++.++.|+++||+ |||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr   94 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRK   94 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccH
Confidence            3445666666666777777776554445555666655  677663 5443     234455678888899999995 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCc
Q 045410           97 RTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG  176 (589)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  176 (589)
                      ++++.+.+++++++++++++++....             ...++..++++|+++|++.|...+....++.|.+|++    
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~----  157 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLLPSFSTI-------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN----  157 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHH-------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC----
Confidence            99999999999999999997632210             0001236888999999999999999999999999873    


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchhHhHHHHHHHH
Q 045410          177 KSQLESFFNWWYFSFTVALVVALTAVVYIQT--------NVSWILGFAIPTGCF  222 (589)
Q Consensus       177 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~g~~~~f~~~~~~~  222 (589)
                        +|+...+....+..+|..++..+..++..        .+|||++|++.++..
T Consensus       158 --~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        158 --KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence              35666777777778888888766666542        479999998876553

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=3e-22  Score=217.62  Aligned_cols=392  Identities=13%  Similarity=0.098  Sum_probs=239.1

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      ..+....++..+.. .+.....+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.+++.++.+
T Consensus         5 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         5 IVLMLGTFMAVLDS-TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHH
Confidence            33444555555553 344555566778999999999999999999999999999999999 5999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      +++++.                     +.+.++++|+++|++.+...+...+++.|.+|+      ++|++.+++++...
T Consensus        83 ~~~~~~---------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~  135 (485)
T TIGR00711        83 LCGVAP---------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP------EKRGRAMAIWGLTV  135 (485)
T ss_pred             HHhCcC---------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH
Confidence            988876                     677899999999999999999999999999986      45788999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHH-H-----HHHHHhccccccC
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAK-V-----ITASCRKRKVNLG  265 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~  265 (589)
                      .+|..++|.+++++.++++||+.|++...+.++..++..+..++.++.+.++.+...... .     ......++..   
T Consensus       136 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~---  212 (485)
T TIGR00711       136 LVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPE---  212 (485)
T ss_pred             HHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCC---
Confidence            999999999999999999999999987766555554444443322111111111110000 0     0000010000   


Q ss_pred             CCCCCCccCCCCCccccccccccCCCCcchhhh-hh------hhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHH
Q 045410          266 QASGNSLYDPPLTQSETESKTTKLPHTNRFRCL-DK------AAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMF  338 (589)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (589)
                       .    -|..+.               ...... ..      ....+..+     .....+++.++     +.+.....+
T Consensus       213 -~----~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~  262 (485)
T TIGR00711       213 -R----GWFDSN---------------EILILSITGLVAIIAFVVWELTD-----DNPLVDLRLFK-----YRNFTIGCV  262 (485)
T ss_pred             -C----CCCCch---------------HHHHHHHHHHHHHHHHHHHHHcC-----CCCccCHHHHc-----CCChHHHHH
Confidence             0    000000               000000 00      00000000     00001111111     111111111


Q ss_pred             HHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHH
Q 045410          339 PVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRI  418 (589)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i  418 (589)
                      ..++....++... .+.+.+.....+.+.      ...+.......++.+++.++.+++    .+|.++       ++.+
T Consensus       263 ~~~~~~~~~~~~~-~~~p~~~~~~~g~s~------~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~~-------~~~~  324 (485)
T TIGR00711       263 YMSLLGLGLYGSF-YLLPLYLQQVLGYTA------LQAGLHILPVGLAPMLSSPIAGRM----GDKIDP-------RKLV  324 (485)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HhhcCc-------HHHH
Confidence            1111111111111 111112111111111      112233333444555555554444    555543       3466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHH
Q 045410          419 TIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFL  498 (589)
Q Consensus       419 ~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  498 (589)
                      .+|..+.+++++++.+..             ....+.+..+...++.+++.+...+.......+..|++.|+++.|+.++
T Consensus       325 ~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  391 (485)
T TIGR00711       325 TIGLILYAVGFYWRAFTF-------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNF  391 (485)
T ss_pred             HHHHHHHHHHHHHHhccC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHH
Confidence            778877777777665321             0023444555567888999888887777888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 045410          499 SLSISSYINSALVNIIHG  516 (589)
Q Consensus       499 ~~~lg~~l~~~l~~~i~~  516 (589)
                      .+.+|+.+|+.+.+.+.+
T Consensus       392 ~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       392 TRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.92  E-value=1.1e-21  Score=209.79  Aligned_cols=166  Identities=12%  Similarity=0.157  Sum_probs=142.8

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .+++......+..+.+.+..+. ..++.+++.+++|.++.+.+++.+++.++..++.++.|+++|| +|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence            3455555555666666666554 4556667788999999999999999999999999999999999 5999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++.++++++.                     +.+.++++|++.|++.+...+....++.|.+|+      ++|++..+
T Consensus        93 ~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~------~~r~~~~~  145 (426)
T PRK12307         93 YSVGTGLSGLAS---------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK------HLKSKASA  145 (426)
T ss_pred             HHHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH------hHhhHhhh
Confidence            999999988877                     778899999999999999999999999999986      45778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTG  220 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~  220 (589)
                      ++..+..+|.++++.+.+.+.+..+||+.|++...
T Consensus       146 ~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        146 FLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            98889999999999999999888999999987543

>PRK03699 putative transporter; Provisional

Probab=99.92  E-value=2.4e-21  Score=205.08  Aligned_cols=173  Identities=12%  Similarity=0.108  Sum_probs=141.8

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      .+++|..+...+..++.....+.....++ .+.+++|+|.++.+++.+.+.++..++.+++|+++|| +|||++++.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~   80 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFA   80 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            35677777777777776666554444444 4667899999999999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +..++.+++.+++                     +.+.++++|+++|++.+...+...+++.|.+|+      ++|+..+
T Consensus        81 ~~~i~~~l~~~~~---------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~------~~r~~~~  133 (394)
T PRK03699         81 LMILAVAGLMFSH---------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG------KQRGSRL  133 (394)
T ss_pred             HHHHHHHHHHHcc---------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc------chHHHHH
Confidence            9999998888866                     678899999999999999999999999999975      3466777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hcchhHhHHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQT-NVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~i~~  226 (589)
                      +..+....+|+.++|.+.+.+.. ..+||+.|.+.+++.++..
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~  176 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            77777788888899988887764 5799999987666554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.91  E-value=8.3e-22  Score=214.97  Aligned_cols=167  Identities=12%  Similarity=0.158  Sum_probs=143.0

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +.+|+.+..+....++..+..+ ....+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFV-LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            3456655555566666666544 455555677789999999999999999999999999999999995 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +..++.+.+.++.                     +.+.++++|++.|++.+...+...+++.|.+|+      +.|++.+
T Consensus        94 ~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~  146 (496)
T PRK03893         94 LFSVGTLACGFAP---------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK------HLRNKAS  146 (496)
T ss_pred             HHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHH
Confidence            9999999988876                     778899999999999999999999999999986      4578888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTG  220 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~  220 (589)
                      ++++...++|..+++.+.+++.+.++||+.|++...
T Consensus       147 ~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        147 GFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            999999999999999999999999999999886443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=4.3e-21  Score=207.68  Aligned_cols=148  Identities=10%  Similarity=0.066  Sum_probs=128.4

Q ss_pred             hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCch
Q 045410           59 KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGW  138 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  138 (589)
                      +++++..+.|++.+.+.+++.++++++|+++|| +|||+++..+.++.+++.+++.++..                   .
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------~  129 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------G  129 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH-------------------c
Confidence            689999999999999999999999999999999 59999999999998888877765431                   1


Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHhHHH
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNV-SWILGFAI  217 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~  217 (589)
                      +.+.+++.|+++|++.+...|....++.|++|+      ++|++.+++++.+.++|..+++.+++++.+.+ |||+.|++
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            356789999999999999999999999999986      56889999999999999999999999999884 99999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 045410          218 PTGCFFLSIVVFLIG  232 (589)
Q Consensus       218 ~~~~~~i~~~~~~~~  232 (589)
                      .++..++..++.+..
T Consensus       204 ~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       204 FGIVGCAWSLLWFVF  218 (465)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            877666555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=7.7e-21  Score=200.32  Aligned_cols=170  Identities=15%  Similarity=0.125  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ..+......+......+...+.++ .+.+++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            344555566666666665556554 45678999999999999999999999999999999995 9999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      .+++++++                     +.+.+++.|++.|++.+...+....++.|.+|+      ++|++.++++..
T Consensus        82 ~~l~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  134 (382)
T PRK10091         82 NAMFTLSS---------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP------GKVTAAVAGMVS  134 (382)
T ss_pred             HHHHHHhC---------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh------HHhhHHHHHHHH
Confidence            99998877                     778899999999999999888888888998875      346677888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          190 SFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      +..+|..++|.+++++.+.++||+.|++.++..++..+.
T Consensus       135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999899999999877765544443

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=4.2e-21  Score=202.33  Aligned_cols=177  Identities=15%  Similarity=0.127  Sum_probs=144.2

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .+|+.........+......+ ...+..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence            345555555555555555443 445556667788999999999999999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++.+++.+..                     +.+.+++.|++.|++.+...+...+++.|.+|+      +.|++.++
T Consensus        92 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~  144 (398)
T TIGR00895        92 FSVFTLLCALAT---------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK------RFRGTAVG  144 (398)
T ss_pred             HHHHHHHHHHcc---------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH------HhhchhHh
Confidence            998888888765                     667788999999999999999999999999986      45778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +.+...++|..+++.+++++.+..+|++.|++.+++..+..++...
T Consensus       145 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       145 LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999899999998875444444333333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=3.1e-22  Score=207.41  Aligned_cols=166  Identities=19%  Similarity=0.242  Sum_probs=142.9

Q ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 045410           35 LGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMT  114 (589)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~  114 (589)
                      ++..++..+........++.++.+++|.+..+.+++.+++.+...++.++.|+++|| +|||++++.+.++.+++..+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence            345667777766666777768889999999999999999999999999999999999 5999999999999999966666


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      ++.                     +.+.++++|++.|++.+...+...+++.|.+|++      +|++.+++.+...++|
T Consensus        81 ~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g  133 (352)
T PF07690_consen   81 FAS---------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLG  133 (352)
T ss_dssp             HHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHH
T ss_pred             hhh---------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhh
Confidence            644                     4558999999999999999999999999999873      4778899999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          195 LVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      ..++|.+++++.+..+||+.|++.+++.++..++
T Consensus       134 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  134 SILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999998899999999988877766553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=5.2e-21  Score=197.66  Aligned_cols=347  Identities=18%  Similarity=0.230  Sum_probs=252.0

Q ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH
Q 045410           33 YILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI  112 (589)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~  112 (589)
                      .+....++..+.++...+.++.|. +++|.+..+.+++.+...+...++.++.|+++|| +|||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHH
Confidence            344567777777777777777776 4679999999999999999999999999999999 59999999999999999998


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410          113 MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT  192 (589)
Q Consensus       113 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (589)
                      +.+..                     +.+.++++|++.|++.+...+...+++.|.+|+      ++|++.+++.+...+
T Consensus        81 ~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  133 (352)
T cd06174          81 LAFAS---------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP------KERGRALGLFSAGFG  133 (352)
T ss_pred             HHHhc---------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc------cchhhhhhHHHHHHH
Confidence            88865                     678899999999999999999999999999986      347778999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCc
Q 045410          193 VALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSL  272 (589)
Q Consensus       193 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (589)
                      +|..++|.+++.+.+..+|++.|++.....++..+...+..|.                                     
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  176 (352)
T cd06174         134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL-------------------------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence            9999999999999998899999998777666555444332100                                     


Q ss_pred             cCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 045410          273 YDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMD  352 (589)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  352 (589)
                                                                                ...  ..+..+........ +.
T Consensus       177 ----------------------------------------------------------~~~--~~~~~~~~~~~~~~-~~  195 (352)
T cd06174         177 ----------------------------------------------------------LLL--LALAFFLLSFGYYG-LL  195 (352)
T ss_pred             ----------------------------------------------------------HHH--HHHHHHHHHhHHHH-HH
Confidence                                                                      000  00000111111111 11


Q ss_pred             cchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 045410          353 QQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVA  432 (589)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~  432 (589)
                      ...+.......+.+.      ...+.......+..++..++.+++    .+|.++|+.      .+..+..+..++.+..
T Consensus       196 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~------~~~~~~~~~~i~~~~~  259 (352)
T cd06174         196 TYLPLYLQEVLGLSA------AEAGLLLSLFGLGGILGALLGGLL----SDRLGRRRL------LLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH------HHHHHHHHHHHHHHHH
Confidence            111111111111111      123334445555566666665554    666654420      5677788888887777


Q ss_pred             HHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          433 GFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVN  512 (589)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~  512 (589)
                      ....                 +.+.......+.+++.+...+....+..|..|++.|++..++.+....+++.+++.+.+
T Consensus       260 ~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         260 ALAP-----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             HHhc-----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543                 34566677888999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 045410          513 IIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFN  556 (589)
Q Consensus       513 ~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~  556 (589)
                      .+.+..      +           +...|.+.+++.+++.++.+
T Consensus       323 ~l~~~~------~-----------~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         323 LLLDTG------G-----------YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHhccc------C-----------cchHHHHHHHHHHHHHHHhe
Confidence            887521      1           23466777777777665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=7e-21  Score=200.55  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=135.3

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      ..|.++.+++..++..++...+.+.++.|+. ++|.|..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence            3456777778888888887777788888876 689999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++...+++++                     +.+.++++|+++|++.+...+...+.+.+..++      ++|++.+++
T Consensus        82 ~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  134 (381)
T PRK03633         82 AAGCAGLGLMV---------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS------RNRGRLLAA  134 (381)
T ss_pred             HHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence            99998888876                     678899999999999999888888888887765      347788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcch
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      ++...++|..+||.+++.+.+...+
T Consensus       135 ~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633        135 YMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccc
Confidence            9999999999999999988765433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.91  E-value=1.4e-20  Score=199.16  Aligned_cols=176  Identities=12%  Similarity=0.133  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHhhhhhhhHHhhhcccchHHHH-HHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGG-SSSLTAIPGALLSDTYLGRFRTLL-YGSIAS  106 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~  106 (589)
                      ++.+..+...++..++.....+.++.|+.+++|.+.++.|++.+...+ ...++++++|+ +||+ ||||.++ .+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence            344555667889999988888999999999999999999999877655 45555655666 9995 9998765 455555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++..+++++.                     +.+.+++.+.+.+...+...|....+..|..+++   + +......++
T Consensus        93 ~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  147 (393)
T PRK15011         93 VLACTLFAWNR---------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKT---G-REAVMFSSF  147 (393)
T ss_pred             HHHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhc---c-chHHHHHHH
Confidence            56666666655                     5555554444444344566777778777755431   1 112334467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+.+.++|.+++|.+++++.+++|||..|++.++..++..+....
T Consensus       148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            778899999999999999999899999998877665555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=2.6e-20  Score=195.93  Aligned_cols=176  Identities=16%  Similarity=0.098  Sum_probs=145.2

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +.+..+.+.+..+...++.....+.+ +++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            44445555555555555544444434 456778999999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+.++.                     +.+.+++.|++.|++.+...+...+++.|.+|+      ++|++.+++
T Consensus        81 ~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  133 (385)
T TIGR00710        81 ALSSLGLALSN---------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG------EELSRIYSI  133 (385)
T ss_pred             HHHHHHHHHHc---------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc------HHHHHHHHH
Confidence            99999888866                     677899999999999999999999999999986      457888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+...++|..+++.+++++.+..+|++.|++.++..++..+....
T Consensus       134 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       134 LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999899999998877665555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.90  E-value=9.5e-21  Score=203.10  Aligned_cols=174  Identities=14%  Similarity=0.091  Sum_probs=128.4

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHH-HHHHH-----HHHhhhhhhhHHhhhcccchHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVV-SIWGG-----SSSLTAIPGALLSDTYLGRFRTL   99 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~-~~~~~-----~~~~~~~~~G~laDr~~Grr~~l   99 (589)
                      .+++......+..+++.+.... ..+..+.+.++++.++.+.+.+. +....     ...+++++.|+++|| +||||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l   89 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGL   89 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHH
Confidence            4566666666777777777554 55566678889999888765443 22222     224678999999999 4999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchh
Q 045410          100 LYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQ  179 (589)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (589)
                      +.+.+++.++.++++++++...+.             ......++++|+++|++.+...+....++.|++|+      ++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------~~  150 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIG-------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP------GR  150 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHH-------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc------cc
Confidence            999999999999999876221100             00012578999999999999999999999999987      34


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHhHHHHHH
Q 045410          180 LESFFNWWYFSFTVALVVALTAVVYIQ--------TNVSWILGFAIPTG  220 (589)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~  220 (589)
                      |++.++++....++|..+++.+++.+.        +.+|||+.|++...
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            777888888788888888877776653        46799999987543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=2.4e-20  Score=197.29  Aligned_cols=173  Identities=15%  Similarity=0.112  Sum_probs=143.4

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      ++.+|..+...+..++..+..+...+.+ +++.+++|+++.+.+++.+++.+...++.++.|+++|| +|||+.++.+.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~   81 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMS   81 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHH
Confidence            3477777777777777777655444444 44567899999999999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +..++.+.+.++.                     +.+.+++.|++.|++.+...+....+..|.++.      +++++..
T Consensus        82 ~~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (394)
T PRK11652         82 IFILGTLVALFAH---------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG------TQLRHAN  134 (394)
T ss_pred             HHHHHHHHHHHHc---------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH------HHHHHHH
Confidence            9999888888765                     677899999999999988888888888887764      3466778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~  226 (589)
                      +++..+..++..++|.+++++.+..|||+.|++.++..++..
T Consensus       135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            888888999999999999999988899999988766544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=5.5e-20  Score=195.76  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=129.1

Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 045410           56 LRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQP  135 (589)
Q Consensus        56 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  135 (589)
                      +.+++|.+..+.++..+++.++..+++++.|+++|| +|||++++.+.+++.++.+.+.+++                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            667899999999999999999999999999999999 5999999999999999999988876                  


Q ss_pred             CchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhH
Q 045410          136 EGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGF  215 (589)
Q Consensus       136 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f  215 (589)
                         +.+.++++|+++|++.+...+....++.|.+|+      ++|.+.+++++...++|..+||.+++++.+..|||+.|
T Consensus       103 ---~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f  173 (413)
T PRK15403        103 ---SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF  173 (413)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence               678899999999999987777777888898886      34667788888899999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 045410          216 AIPTGCFFLSIVVFLI  231 (589)
Q Consensus       216 ~~~~~~~~i~~~~~~~  231 (589)
                      ++.++..++..+..++
T Consensus       174 ~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        174 AIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9877766655544333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=4.2e-20  Score=195.40  Aligned_cols=159  Identities=13%  Similarity=0.111  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +.+....++..++.......++. +.+++|.++.+.+++.+.+.+.+.++.+++|+++||+ ||||+++++.+++.++.+
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~   83 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCL   83 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHH
Confidence            34445666666654444444444 3578999999999999999999999999999999995 999999999999998888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .+.++.                     +   .++.|+++|++.+...|...+++.|.+|+      ++|+++.++.....
T Consensus        84 ~~~~~~---------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~------~~~~~a~~~~~~~~  133 (393)
T PRK11195         84 LMLFGI---------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG------EKLVKANGWMEGST  133 (393)
T ss_pred             HHHHHH---------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHH
Confidence            777654                     3   26789999999999999999999999986      46888999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFF  223 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  223 (589)
                      ++|..+||.++|++.+. .|+..+.+.....+
T Consensus       134 ~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195        134 IAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999999999999884 47766665554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=4.5e-23  Score=209.57  Aligned_cols=184  Identities=12%  Similarity=0.104  Sum_probs=162.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH
Q 045410           22 QRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY  101 (589)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~  101 (589)
                      ...+.-++.+..+.+++.+++..-|.+.. ..+-+++.+|++++..|++.+++.+.+.+..|+.|+++||| .||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEee
Confidence            34455666777788899999999887666 44456678999999999999999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      |..++.++.+.++++.                     .+|++.++|.+.|+|.+...|+++++++|.||+      ..|+
T Consensus       104 G~~iW~~Av~~~~fs~---------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~------~~Rs  156 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSN---------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD------DKRS  156 (493)
T ss_pred             HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc------hhhh
Confidence            9999999999999987                     899999999999999999999999999999997      4588


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          182 SFFNWWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      +.++++|+++++|..+|.+++..+....+ |||.|.+.+++.++..++.++..+
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            99999999999999999999988887766 999999988887777666555544

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=3.7e-21  Score=210.38  Aligned_cols=145  Identities=16%  Similarity=0.167  Sum_probs=124.7

Q ss_pred             HHHHHhcCCc---hhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 045410           54 VYLRTKYNMD---GILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGA  130 (589)
Q Consensus        54 ~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  130 (589)
                      +.+.+++|++   +.+.+++.+++.++..++.++.|+++|| +|||++++++.++..++.++.+++.             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            3456789998   9999999999999999999999999999 5999999999999999999888876             


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045410          131 QCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                              +++.+++.|++.|++.+...+...+++.|.+|+      +.|+...+++..+..+|.++++.++.++.+   
T Consensus       179 --------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---  241 (505)
T TIGR00898       179 --------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---  241 (505)
T ss_pred             --------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence                    778899999999999999999999999999987      346677888888888999999988766543   


Q ss_pred             hhHhHHHHHHHHHHHHHHH
Q 045410          211 WILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~  229 (589)
                      ||+.|++.++..++..+..
T Consensus       242 wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988776655554444

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=6.5e-20  Score=194.60  Aligned_cols=168  Identities=8%  Similarity=0.101  Sum_probs=134.7

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      -||.+....+.+++...+.+....++++++ +++|.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~   88 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLW   88 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHH
Confidence            455566666777777787777778888888 5789999999999999999999999999999999 59999999999998


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+.... ..                ..+.+.+++.|++.|++.+...+...+.+.+.+|+      ++|++++++
T Consensus        89 ~~~~~~~~~~~-~~----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~------~~~g~~~g~  145 (402)
T TIGR00897        89 CVGHAAFIVFG-LG----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ------DNLSSAVGW  145 (402)
T ss_pred             HHHHHHHHHHh-cc----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH------HHHHHHHHH
Confidence            88876653311 00                01567788899999999888777788888888876      457888999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhcchhHhHHHHH
Q 045410          187 WYFSFTVAL-VVALTAVVYIQTNVSWILGFAIPT  219 (589)
Q Consensus       187 ~~~~~~~g~-~~~~~~~~~l~~~~g~~~~f~~~~  219 (589)
                      ++.+.++|. .++|.+++++.+.+||+..++...
T Consensus       146 ~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       146 FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            999999996 589988889888888765555433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=5.1e-21  Score=204.30  Aligned_cols=394  Identities=12%  Similarity=0.036  Sum_probs=221.0

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +.+..+......++..++++.+.++++.|+.+++|++..+.|.+.+++.+...+++++.|+++|| +||||+++++..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~   86 (420)
T PRK09528          8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGL   86 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence            34556666667888888888889999999999999999999999999999999999999999999 59999998876666


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++..........+.                 -....+.+.++.++..+...+...+.+.++.++  .  .++++..++.
T Consensus        87 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~g~~~g~  145 (420)
T PRK09528         87 LVLFGPFFIYVFAPL-----------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER--V--SRRSGFEYGR  145 (420)
T ss_pred             HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH--H--Hhhccccchh
Confidence            554432221110000                 000011222222333332222222223232211  0  0224445666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCC
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQ  266 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (589)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+...++.+++ ++.              +++    ++
T Consensus       146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~----~~  205 (420)
T PRK09528        146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKV--------------ANA----LG  205 (420)
T ss_pred             hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhh--------------ccc----hh
Confidence            677789999999999998876 5899999887766655554444332221100 000              000    00


Q ss_pred             CCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHH-HHHHHH
Q 045410          267 ASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFP-VWITGI  345 (589)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~  345 (589)
                      .+        ++               ..+.-+......                         .+.++.... ......
T Consensus       206 ~~--------~~---------------~~~~~~~~~~l~-------------------------~~~~~~l~l~~~~~~~  237 (420)
T PRK09528        206 AN--------AS---------------AVSLKDALALLK-------------------------LPKFWFLVLYVIGVAC  237 (420)
T ss_pred             cc--------cc---------------cccHHHHHHHcc-------------------------CCCeEeehHHHHHHHH
Confidence            00        00               000000000000                         000001111 111111


Q ss_pred             HHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHH
Q 045410          346 FCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMA  425 (589)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~  425 (589)
                      .+.....+.+.+..... . +....  ....+.+..++.+...++.++.+++    .+|+++|+       .+.++.++.
T Consensus       238 ~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~~-------~~~~~~~l~  302 (420)
T PRK09528        238 FYDVFDQQFPNFFASFF-A-TPEQG--TRVFGYLNSFQVFLEALIMFFAPFI----INRIGAKN-------ALLLAGTIM  302 (420)
T ss_pred             HHHHHHHHHHHHHHHHH-h-ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcch-------hhHHHHHHH
Confidence            11111112222221111 0 11110  0011233333444444555554444    77766552       566777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH-HHHHHHHHH
Q 045410          426 ILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV-FFLSLSISS  504 (589)
Q Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~  504 (589)
                      +++.++.++.+                 +.+.++...++.+++.....+....++.+..|++.+++..+. +++...+|.
T Consensus       303 ~~~~~l~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        303 AVRIIGSGFAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA  365 (420)
T ss_pred             HHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH
Confidence            77776666542                 344555567777777777777778899999999999988765 677788999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          505 YINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       505 ~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      .+++.+.|.+.|..      +           +...|.+++++.++..++.++..
T Consensus       366 ~ig~~~~G~l~~~~------G-----------~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        366 VFLSTLAGNLYDSI------G-----------FQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHHHHHHHhh------C-----------chHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988743      2           34567777777766665555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.90  E-value=7.8e-21  Score=204.00  Aligned_cols=158  Identities=15%  Similarity=0.037  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      ....+++++ +|+++.+.+++.+++.++..++.++.|+++|| +|||+.++.+.++..++.+.+.+..+..         
T Consensus        47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------  115 (438)
T TIGR00712        47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWAT---------  115 (438)
T ss_pred             HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcccccc---------
Confidence            334556665 59999999999999999999999999999999 5999999999999888888776643111         


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ-TN  208 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~  208 (589)
                              .+.+.+++.|++.|++.+...+....++.|.+|+      ++|++.+++++...++|..+++.+.+... ..
T Consensus       116 --------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       116 --------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             --------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence                    1456678889999999999989899999999986      34778899999999999999887776644 45


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHh
Q 045410          209 VSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       209 ~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      .+||+.|++.+++.++..+..++.
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            689999998777665544443333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=2.9e-21  Score=211.29  Aligned_cols=423  Identities=12%  Similarity=0.100  Sum_probs=250.9

Q ss_pred             hhHHHHHHHHHHh-----cCCch--hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcC
Q 045410           47 SLIANMTVYLRTK-----YNMDG--ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASI  119 (589)
Q Consensus        47 ~~~~~l~~yl~~~-----lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~  119 (589)
                      +..+.+...+.+.     ...+.  .+.+++.+++.++..++.++.|+++|+ +|||+.++++.+++.+|.++++++.  
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~--  140 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP--  140 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh--
Confidence            4555555555542     12222  455999999999999999999999999 5999999999999999999999988  


Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 045410          120 PKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVAL  199 (589)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  199 (589)
                                         +.+.++++|++.|+|.|+.....+.+++|..|+      +.|+...+.++...++|..++.
T Consensus       141 -------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~------~~RG~l~~~~~l~~~~Gi~~~~  195 (513)
T KOG0254|consen  141 -------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA------HIRGTLVSLYQLFITIGILLGY  195 (513)
T ss_pred             -------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh------hhhHHHHHHHHHHHHHHHHHHH
Confidence                               788999999999999999999999999999886      4688889999999999999985


Q ss_pred             HHHHHHHhh--cchhHhHHHHHHHHHHHHHHHHHhh--ccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCC
Q 045410          200 TAVVYIQTN--VSWILGFAIPTGCFFLSIVVFLIGY--HTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDP  275 (589)
Q Consensus       200 ~~~~~l~~~--~g~~~~f~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (589)
                      .+ +....+  ++||..+.+..+..++..+.+++..  |++..+..   ...+..+.+ ...+...   .++.       
T Consensus       196 ~~-~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---~~~~a~~~l-~~l~g~~---~~~~-------  260 (513)
T KOG0254|consen  196 CI-NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---RLEEAKRSL-KRLRGLS---PEDV-------  260 (513)
T ss_pred             HH-hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---ChHHHHHHH-HHHhCCC---Ccch-------
Confidence            44 454443  4899888887776666555544321  22111100   111111100 0011100   0000       


Q ss_pred             CCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcch
Q 045410          276 PLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQN  355 (589)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  355 (589)
                      .                ........... ..   .... .....|..+..  ....|+....+.+..++.........++
T Consensus       261 ~----------------~~~~~~~~~~~-~~---~~~~-~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y  317 (513)
T KOG0254|consen  261 E----------------VELELLKIKLL-VE---AEVA-EGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYY  317 (513)
T ss_pred             H----------------HHHHHHHHHHH-Hh---hhcc-cccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEee
Confidence            0                00000000000 00   0000 00011211111  1123344434444444443332222233


Q ss_pred             hhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045410          356 TIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFV  435 (589)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~  435 (589)
                      .....+....+.+.   ....-....++.++.++...    +    .+|.+||       ..+..|...+.+++++++..
T Consensus       318 ~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~----l----vd~~gRr-------~lll~s~~~m~~~~~~~~~~  379 (513)
T KOG0254|consen  318 STTIFKSAGLKSDT---FLASIILGVVNFLGTLVATY----L----VDRFGRR-------KLLLFGAAGMSICLVILAVV  379 (513)
T ss_pred             hHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHH----H----HHHhccH-------HHHHHhHHHHHHHHHHHHHH
Confidence            33333333222210   01112223333333333322    2    5555554       37888999999999888876


Q ss_pred             HHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          436 ERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIH  515 (589)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  515 (589)
                      .....+...    ......+..++..+++.........|..+.+..|.+|.+.|+++.++....+++.+++-........
T Consensus       380 ~~~~~~~~~----~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  380 GVFALYYPN----SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHhccCCC----cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532111100    0112233344445555666666778888889999999999999999999988888877766665554


Q ss_pred             hccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH-HHHHHhcccccccccccccch
Q 045410          516 GLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLL-YFNFFACRFVSSNAIGKKESQ  574 (589)
Q Consensus       516 ~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  574 (589)
                      ...      +           ....|..+++++.+... +.+++.+|+|+++.++.++..
T Consensus       456 ~~~------~-----------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~  498 (513)
T KOG0254|consen  456 EAL------G-----------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF  498 (513)
T ss_pred             Hhc------c-----------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence            311      0           12356666666666666 788889999999998877644

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=1.1e-20  Score=197.74  Aligned_cols=151  Identities=18%  Similarity=0.104  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      ....+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+.++.+.++..++.+++.++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3445678889999999999999999999999999999999995 999999999999999999998876            


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVAL-TAVVYIQTN  208 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~  208 (589)
                               +.+.++++|++.|++.+...+...+++.|.+|+      ++|++.+++.+.+.++|..+++ .+++.+.+.
T Consensus        82 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        82 ---------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             ---------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH------hhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence                     678899999999999999999999999999986      3466778888888999999999 566777777


Q ss_pred             cchhHhHHHHHHHHHHHHHH
Q 045410          209 VSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       209 ~g~~~~f~~~~~~~~i~~~~  228 (589)
                      .+|++.|++.+++.++..+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHH
Confidence            89999998877655544333

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=2.4e-19  Score=190.16  Aligned_cols=146  Identities=17%  Similarity=0.112  Sum_probs=125.4

Q ss_pred             HHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 045410           56 LRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQP  135 (589)
Q Consensus        56 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  135 (589)
                      +.+++|.++.+.+++.+++.++..++.++.|+++|| +|||+.+..+.++..++.+.+.++.                  
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------------   92 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE------------------   92 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            678999999999999999999999999999999999 5999999999999998888888866                  


Q ss_pred             CchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhH
Q 045410          136 EGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGF  215 (589)
Q Consensus       136 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f  215 (589)
                         +.+.+++.|+++|++.+...+...+++.|.+|++      ++.+.++..+...++|..++|.+++++.+.+|||+.|
T Consensus        93 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~  163 (401)
T PRK11043         93 ---SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIF  163 (401)
T ss_pred             ---CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Confidence               6677899999999998888888888999998862      3556677777778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 045410          216 AIPTGCFFLSIVVF  229 (589)
Q Consensus       216 ~~~~~~~~i~~~~~  229 (589)
                      ++..+..++..+..
T Consensus       164 ~~~~~~~~~~~~~~  177 (401)
T PRK11043        164 ATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88766655544433

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=2.5e-19  Score=191.94  Aligned_cols=163  Identities=13%  Similarity=0.073  Sum_probs=125.0

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchH
Q 045410           18 PPDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFR   97 (589)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~   97 (589)
                      .+|...++++...+..+..+-+...+... ....+.+.+++++|.++.+.+++.+.+.+++.+++++.|+++||+ ||||
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~   92 (438)
T PRK10133         15 DKDAGQSRSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKA   92 (438)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHH
Confidence            34444445566666656556666666644 444455556899999999999999999999999999999999995 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcc
Q 045410           98 TLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGK  177 (589)
Q Consensus        98 ~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  177 (589)
                      ++..+.++++++.+++......                  .+.+.++++|+++|+|.|...+..++++.|..|+      
T Consensus        93 ~l~~g~~~~~~~~~l~~~~~~a------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~------  148 (438)
T PRK10133         93 GIITGLFLYALGAALFWPAAEI------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------  148 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh------
Confidence            9999999999999876422100                  1678899999999999999999999999986543      


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          178 SQLESFFNWWYFSFTVALVVALTAVVYIQ  206 (589)
Q Consensus       178 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  206 (589)
                      ++|...++.+.....+|..+++.+++.+.
T Consensus       149 ~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        149 SSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333467777778888888888776543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=2.9e-19  Score=188.35  Aligned_cols=364  Identities=12%  Similarity=0.034  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH-HHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF-LGM  110 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~-~~~  110 (589)
                      +.+....++...++....++++.|+. ++|+|..+.|++.+++.+...+++++.|.++||+ ||++.......+.. +..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            33445566666665555677888884 7899999999999999999999999999999995 98654432222111 111


Q ss_pred             H-HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          111 G-IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       111 ~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      + .+..++                     +.+.+++.|++++.+.+...|...++..+. +       ++|++.++....
T Consensus        85 ~~~~~~~~---------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-------~~~~~~~g~~~~  135 (382)
T TIGR00902        85 AAFSAGAH---------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-------KQFGLDYGKVRL  135 (382)
T ss_pred             HHHHHhhh---------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-------HHcCCCccHHHH
Confidence            1 222333                     678899999999999988888888876552 2       234556888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCC
Q 045410          190 SFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASG  269 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (589)
                      ..++|.+++|.+++++.+.+|||..|++......+.+ ..+...++.   +++++..                   +++ 
T Consensus       136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~~-------------------~~~-  191 (382)
T TIGR00902       136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAIP-------------------EDE-  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCcccc-------------------ccc-
Confidence            8999999999999999999999999887654432222 222221110   1100000                   000 


Q ss_pred             CCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHH-HHHHHHHHHH
Q 045410          270 NSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMF-PVWITGIFCF  348 (589)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  348 (589)
                             .              ..                       ...+    .+..++ |+.+... ..++....+.
T Consensus       192 -------~--------------~~-----------------------~~~~----~~~l~~-~~~~~~l~~~~l~~~~~~  222 (382)
T TIGR00902       192 -------S--------------QG-----------------------DSAF----IALLKN-PMNLRFLAAVCLIQGAHA  222 (382)
T ss_pred             -------c--------------cc-----------------------chhH----HHHHcC-hHHHHHHHHHHHHHHHHH
Confidence                   0              00                       0000    000011 1111111 1111112221


Q ss_pred             HhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 045410          349 LAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILS  428 (589)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~  428 (589)
                      ..+. +.+.+. +..+.+..      ..+....+..+..++...+    .+++.+|+       +.++.+.++.++..+.
T Consensus       223 ~~~~-~~~~~l-~~~g~s~~------~~g~l~~~~~~~~i~~~~~----~~~l~~r~-------g~~~~l~~~~~~~~~~  283 (382)
T TIGR00902       223 AYYG-FSAIYW-QAAGISAS------ATGLLWGIGVLAEIIIFAF----SNKLFQNC-------SARDLLLISAIACVGR  283 (382)
T ss_pred             HHHH-HHHHHH-HHCCCCHh------HHHHHHHHHHHHHHHHHHH----hHHHHhhC-------CHHHHHHHHHHHHHHH
Confidence            1111 111111 11111111      1122222233333333333    33345554       4455788899999988


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHH-HHHHHHHHHH
Q 045410          429 LLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFF-LSLSISSYIN  507 (589)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~l~  507 (589)
                      ...+.+.+                 +.+.++...++.++..+...+....++.+. |++.|++++++++ +..++|..++
T Consensus       284 ~~~~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g  345 (382)
T TIGR00902       284 WAIIGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIF  345 (382)
T ss_pred             HHHHHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88777653                 455666678999999999999999999988 9999999999986 4668999999


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 045410          508 SALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLY  554 (589)
Q Consensus       508 ~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~  554 (589)
                      +.++|.+.|..         +         ...|+..++++++++++
T Consensus       346 ~~~~G~l~~~~---------g---------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       346 TAFAGFIYPTL---------G---------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHhc---------c---------HHHHHHHHHHHHHHHHH
Confidence            99999988632         1         14567777777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=3.8e-19  Score=188.03  Aligned_cols=169  Identities=14%  Similarity=0.102  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      ...+...+....+.+...+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHH
Confidence            33445666666665555554444 556899999999999999999999999999999999 5999999999999999988


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .+..+.                     +.+.++++|+++|++.+...+...+++.|.+|+      ++|++.+++.+...
T Consensus        84 ~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~  136 (392)
T PRK10473         84 LCSLAE---------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD------RRRAKVLSLLNGIT  136 (392)
T ss_pred             HHHHhC---------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHH
Confidence            888765                     567788999999999999899999999999986      45888899998899


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      ++|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus       137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888899999988776555444443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2e-20  Score=196.89  Aligned_cols=400  Identities=13%  Similarity=0.098  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 045410           68 VNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGL  147 (589)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (589)
                      +.+++++.++.+++++++|+++||+ |||..+.++.++..++.+++.++...+                  +..+++.+|
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~------------------~~e~li~GR  123 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP------------------SFEMLILGR  123 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHH
Confidence            5678899999999999999999995 999999999999999988888876322                  678999999


Q ss_pred             HHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHH-hhcchhHhHHHHHHHHHHH
Q 045410          148 ALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV-VYIQ-TNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       148 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~-~~~g~~~~f~~~~~~~~i~  225 (589)
                      ++.|+..|......+-++.|..|++      -|+..-.....+.++|-+++..++ ..+. +.-.|++.+.+..+..++.
T Consensus       124 ~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~  197 (485)
T KOG0569|consen  124 LIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ  197 (485)
T ss_pred             HHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999974      466666667777888888775443 2222 3345988888877776666


Q ss_pred             HHHHHHhh--ccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhh-h-hh
Q 045410          226 IVVFLIGY--HTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCL-D-KA  301 (589)
Q Consensus       226 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  301 (589)
                      ++.+.+..  |++.-..  +++.                                +||..++......++..... + ..
T Consensus       198 l~~l~~~PESPk~Ll~~--k~~~--------------------------------~~A~~sl~~y~G~~~~~~~~e~~~~  243 (485)
T KOG0569|consen  198 LALLPFLPESPKYLLIK--KGDE--------------------------------EEARKALKFYRGKEDVEAEIEEMLR  243 (485)
T ss_pred             HHHHhcCCCCcchHHHH--cCCH--------------------------------HHHHHHHHHHhCCCcchhHHHHHHH
Confidence            55554432  1211110  0111                                11111111111111100000 0 00


Q ss_pred             hhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccch
Q 045410          302 AVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGL  381 (589)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (589)
                      ......  . ++......++.+.+.  ..++.+...+.+.+.+..-......+++..+....+++.+.  ....+...+.
T Consensus       244 e~~~~~--~-~~~~~~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~--a~~an~~~g~  316 (485)
T KOG0569|consen  244 EIEEEE--L-EKKKQISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE--AQYANLGIGI  316 (485)
T ss_pred             HHHHhc--c-ccccCCcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH--HHHHHHHHHH
Confidence            000000  0 000001111111111  11222333333333333322222222222222222222111  0011111222


Q ss_pred             hhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHH
Q 045410          382 ISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQ  461 (589)
Q Consensus       382 i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  461 (589)
                      ++.+..+++..        +.+|.+||+       .+..++.++.+..+++..........       ....++..++..
T Consensus       317 v~~~~t~~~~~--------lid~~gRRp-------Lll~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~y~~i~~~  374 (485)
T KOG0569|consen  317 VNLLSTLVSPF--------LIDRLGRRP-------LLLISLSLMAVALLLMSIALFLSNSF-------GSWLSYLCIAAI  374 (485)
T ss_pred             HHHHHHHHHHH--------HHHhcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHH
Confidence            33333333333        367776653       67777777777776666554211100       000111112233


Q ss_pred             HHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHH
Q 045410          462 FSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFY  541 (589)
Q Consensus       462 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f  541 (589)
                      +.+.........|..+-+..|.+|++.|+.++++..+.+++.+++-....+.+.+..+                  .++|
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------------~~~f  436 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------------PYVF  436 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chhh
Confidence            3334444555688899999999999999999999999999999999988888875331                  2578


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccccc
Q 045410          542 FTIAALEVVNLLYFNFFACRFVSSNAIGKKES  573 (589)
Q Consensus       542 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (589)
                      ..+++.+++..++.++..||+|+++..++.+.
T Consensus       437 ilF~i~~~~~~i~~~~~lPETkgr~~~eI~~~  468 (485)
T KOG0569|consen  437 ILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE  468 (485)
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence            89999999999999999999999988776544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.87  E-value=9.4e-19  Score=185.13  Aligned_cols=152  Identities=13%  Similarity=0.073  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRT-KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      |.++. ....|...|....+.+.+..++.+ ++|+|++|.+++.+++.+.+.+++++.|++.||+ |.|+++.++.++++
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            44443 334444445545556666666655 7999999999999999999999999999999995 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +.++.++++...+                ..+++.+++.|++.|++ +...+.....++++||+      ++|+++++++
T Consensus       112 i~~~~~~~a~~~~----------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~------~~rG~A~Gi~  168 (462)
T PRK15034        112 IPCVWLGIAVQNP----------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK------AKQGSALGIN  168 (462)
T ss_pred             HHHHHHHHHHccc----------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH------hHhHHHHHHH
Confidence            9999888762000                01678899999999998 66889999999999987      4577888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYI  205 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l  205 (589)
                      ....|+|..+++++.+.+
T Consensus       169 ~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        169 GGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            666777777666665543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.1e-18  Score=183.24  Aligned_cols=154  Identities=14%  Similarity=0.150  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           48 LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      ..+.++.+. +++|+++.+.+++.+++.++..++.++.|+++||+ |||+.+..+.++..++...+.++.          
T Consensus        10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102         10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            345556555 57999999999999999999999999999999995 999999999999999999988866          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +.+.+++.|+++|++.+...+...+++.|.+|+      ++|++.+++.+....+|..++|.+++.+.+
T Consensus        78 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         78 -----------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       667889999999999999999999999999876      457888999999999999999999999999


Q ss_pred             hcchhHhHHHHHHHHHHHHHHHH
Q 045410          208 NVSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      ..+|++.|++.+...++..+...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        141 WFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHH
Confidence            89999999887666555544433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=6.4e-19  Score=187.76  Aligned_cols=396  Identities=12%  Similarity=0.085  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccc-hHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGR-FRTLLYGSIASFLG  109 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l~~~~~~~~~~  109 (589)
                      ...+.+..|+..+++-...++++.|+.+++|++..+.|++.+++.++..+++++.|+++||+ || |+++.++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~   82 (418)
T TIGR00889         4 TAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALL   82 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence            34455677777777667779999999999999999999999999999999999999999994 65 77888888877777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCC--CCCcchhhhhHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTT--TPKGKSQLESFFNWW  187 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~  187 (589)
                      ..+..+..                     +++.+++.|++.+++.+...+...++..+...+.  +..+...|.+.++  
T Consensus        83 ~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--  139 (418)
T TIGR00889        83 LFFAAQVT---------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--  139 (418)
T ss_pred             HHHHHHhc---------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--
Confidence            77777655                     5677888888888887776666655533222100  0000011223332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCC
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQA  267 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (589)
                          .+|..++|.+++.+.....|. +|++.+++.++..+..+ ..++.++.+ ++++ .+..+.               
T Consensus       140 ----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~-~~~~-~~~~~~---------------  196 (418)
T TIGR00889       140 ----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAK-STAK-MSIKVM---------------  196 (418)
T ss_pred             ----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCc-cccc-cCHHHH---------------
Confidence                468888888888774332344 45555554444433322 222211000 0000 000000               


Q ss_pred             CCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHH
Q 045410          268 SGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFC  347 (589)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  347 (589)
                                               ..   .+...+.                        ++.+.....+..++.....
T Consensus       197 -------------------------~~---~~~~~~~------------------------k~~~~~~~~~~~~~~~~~~  224 (418)
T TIGR00889       197 -------------------------LG---LDAFILF------------------------KNKRMAIFFFFSMLLGAPL  224 (418)
T ss_pred             -------------------------hh---hhHHHHh------------------------cCCCeeeHHHHHHHHHhHH
Confidence                                     00   0000000                        0000000011111111111


Q ss_pred             HHhhhcchhhHHhhhhhcccccC-ccc-ccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHH
Q 045410          348 FLAMDQQNTIGILQAIQTNKRFG-SFN-VPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMA  425 (589)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~  425 (589)
                      ...+ .+...+... .+.+.... ++. ...+....+..+..++...+.    .++.+|+++|       +.+.++.++.
T Consensus       225 ~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~----g~l~dr~g~r-------~~l~~~~~~~  291 (418)
T TIGR00889       225 QITN-IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTI----PFFLKRFGIK-------KVMLLSLVAW  291 (418)
T ss_pred             HHHH-HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhCcH-------HHHHHHHHHH
Confidence            1111 111111111 11111000 000 011222233333334444443    3446776544       4677788777


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHH-HHHHHHH
Q 045410          426 ILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFF-LSLSISS  504 (589)
Q Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~  504 (589)
                      .+++.++.....             .....+.++....+.+++.+...+....++.+.+|++.|++++|+.+ +...+|.
T Consensus       292 ~v~~~l~~~~~~-------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~  358 (418)
T TIGR00889       292 ALRFGFFAYGDP-------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS  358 (418)
T ss_pred             HHHHHHHHHcCc-------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence            777665554210             01122334556777888888888888899999999999999999997 5678999


Q ss_pred             HHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 045410          505 YINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRF  562 (589)
Q Consensus       505 ~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~  562 (589)
                      .+|+.+.|.+.|..+..           +..+++..|.+.+++.++..++++++.++.
T Consensus       359 ~iGp~l~G~l~~~~g~~-----------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       359 LLGYILSGVMVEKMFAY-----------GTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhccc-----------cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999988643210           001356778888888888888888877654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.87  E-value=2.2e-21  Score=203.49  Aligned_cols=366  Identities=33%  Similarity=0.545  Sum_probs=233.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC
Q 045410           96 FRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK  175 (589)
Q Consensus        96 r~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  175 (589)
                      .|+++++.+++.+|++++.++. .|...+           ++.+...++++.++.++|.|+++|++.++++|+|++++  
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~-~~~~~~-----------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~--   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSA-IPPSLP-----------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD--   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHH-TSSSC-----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT--
T ss_pred             CHhhhHHHHHHHHHHHHhHHHH-hcchhh-----------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc--
Confidence            4789999999999999988876 333111           12355779999999999999999999999999999763  


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc-CCCCChHHH-HHHHH
Q 045410          176 GKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK-NPQGSVFVD-MAKVI  253 (589)
Q Consensus       176 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~  253 (589)
                       +++|.++|+++|+++|+|+.+++.+.+++.+++||.+.|.++.+..+++++.++..+++++.. +|.+.+..+ ...+.
T Consensus        67 -~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~  145 (372)
T PF00854_consen   67 -DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVL  145 (372)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHH
T ss_pred             -hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHH
Confidence             356778999999999999999999999999999999999999999999999988888887766 566665555 23333


Q ss_pred             HHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcc-cchhhhHHHHH
Q 045410          254 TASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWR-LCSLLQVEQLK  332 (589)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  332 (589)
                      ....++.....+... .+....       ................. .......+        ...|. .+..+.+++.+
T Consensus       146 ~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~k  208 (372)
T PF00854_consen  146 VAAFKKRKLAVPKGS-SWLDWA-------LFQYSERSIFGIIVFIR-AAVIFFPE--------IFFWALFCQVQRVEELK  208 (372)
T ss_dssp             HHHHHHHCCCH-HHH-HHHHHH-------HHHHCCCCCCCCCCHHH-HHHHHCCC--------HHHHTTTSSTTTHHHCC
T ss_pred             HHHHHHhhcccccch-HHHHHh-------hhhhhhhhhhhhhhhcc-chhhhhhh--------hhhcccCCccceeeeee
Confidence            333333332221110 000000       00000000000000000 11111100        00110 02234555666


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCc-ccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCC
Q 045410          333 LLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS-FNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIR  411 (589)
Q Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~  411 (589)
                      .+.+.++.+.+.++++..+.+.+.....+...++....+ ++.+++++..+|.+..+++.|+++++++|+.+    +++.
T Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~----~~~~  284 (372)
T PF00854_consen  209 ALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR----RGIQ  284 (372)
T ss_dssp             HHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT----T---
T ss_pred             eeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh----hccc
Confidence            777777777777788887777777777777777777777 88999999999999999999999999888877    2233


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHH
Q 045410          412 LTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTV  491 (589)
Q Consensus       412 ~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~  491 (589)
                      .+.+.++.+|++++.+++++....+..|.......+    ..+.+|.++.+++..+++.+..+...+...|.+|++..+.
T Consensus       285 ~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~  360 (372)
T PF00854_consen  285 PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG----KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSS  360 (372)
T ss_dssp             ---HHHHHHH-HHHHHHHHTTTHHHH---HH----T----T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSS
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHH
Confidence            688999999999999999998887765554444333    4445677799999999999999999998888888888888


Q ss_pred             HHHHHHHHHH
Q 045410          492 SGAVFFLSLS  501 (589)
Q Consensus       492 ~~g~~~~~~~  501 (589)
                      .+|++.....
T Consensus       361 m~~~~~~~~~  370 (372)
T PF00854_consen  361 MMGIWFALSA  370 (372)
T ss_dssp             STHHHHHHH-
T ss_pred             HHHHHHHHhc
Confidence            8887766543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=4.9e-19  Score=187.51  Aligned_cols=389  Identities=12%  Similarity=0.028  Sum_probs=225.7

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |..|......++...++..+.++++.|+++++|.+..+.+++.+++.+...+++++.|+++|| +|||+.++.+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence            445667677888888888888999999999999999999999999999999999999999999 5999999988776655


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +..........+.+             .......+++++++.|++.+...+....+..|.-++        +...++...
T Consensus        81 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~  139 (396)
T TIGR00882        81 LFAPFFIYVFGPLL-------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKAR  139 (396)
T ss_pred             HHHHHHHHHhhhHH-------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhh
Confidence            44332211100100             000223456678888888888888888777664221        112455666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCC
Q 045410          189 FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQAS  268 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (589)
                      ...++|..++|.+++.+.+ .+|+..|++.+.+.++..++.+...++    +|+++...          ++.+  . +++
T Consensus       140 ~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~--~-~~~  201 (396)
T TIGR00882       140 MFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK----APSSATVA----------NALG--A-NAS  201 (396)
T ss_pred             hhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC----Cchhhhhh----------cccc--c-ccC
Confidence            6778999999999988865 699999988776665554443332221    11100000          0000  0 000


Q ss_pred             CCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHH
Q 045410          269 GNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCF  348 (589)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  348 (589)
                              +              .+.   .+..++                        .++ |..+..+...+.....+
T Consensus       202 --------~--------------~~~---~~~~~~------------------------l~~-~~~~~~~l~~~~~~~~~  231 (396)
T TIGR00882       202 --------A--------------FSL---KLALEL------------------------FRQ-RKFWMFVLYVVGVACVY  231 (396)
T ss_pred             --------C--------------CCH---HHHHHH------------------------HcC-CcHHHHHHHHHHHHHHH
Confidence                    0              000   000000                        000 11111111111111111


Q ss_pred             HhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 045410          349 LAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILS  428 (589)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~  428 (589)
                      ....+..+.+...  .......+ ....+....+..+...+.....    .++.+|.++|       +.+.++.++.+++
T Consensus       232 ~~~~~~~~~y~~~--~~~~~~~~-~~~~g~~~~~~~i~~~~~~~~~----g~l~~r~g~~-------~~l~~~~~l~~l~  297 (396)
T TIGR00882       232 DVFDQQFANFFTS--FFATPQQG-TRVFGYVTTMGELLNALIMFCA----PLIINRIGAK-------NALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHH--hccccccc-hHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccc-------hhHHHHHHHHHHH
Confidence            1111111211111  11110100 0011222233333333334443    3346776554       2566777777776


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH-HHHHHHHHHHHH
Q 045410          429 LLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV-FFLSLSISSYIN  507 (589)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~l~  507 (589)
                      ..+.....                 +.+++.+...+.+++..........+..+..|++.++++.+. ++....+|+.++
T Consensus       298 ~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~  360 (396)
T TIGR00882       298 IIGSSFAT-----------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFL  360 (396)
T ss_pred             HHHHHhcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHH
Confidence            65544321                 344455566777777666555666778888899999988776 678889999999


Q ss_pred             HHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 045410          508 SALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYF  555 (589)
Q Consensus       508 ~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~  555 (589)
                      +.+.|.+.|..                 ++...|.+.+++.++..+.-
T Consensus       361 ~~l~G~l~~~~-----------------G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       361 STLAGNMYDSI-----------------GFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHhHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHH
Confidence            99999988632                 24567777777766665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.86  E-value=5.5e-18  Score=184.20  Aligned_cols=175  Identities=15%  Similarity=0.111  Sum_probs=136.7

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-----cchHH-HH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-----GRFRT-LL  100 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grr~~-l~  100 (589)
                      +||+.+.++++.+...+..+.....++.++. +.|.+..+.+.... .... +++.++.|+++|| +     ||||. ++
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll   85 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLL   85 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHc-ccccCCCCchHHHH
Confidence            4556677777888888887777777888876 56999999998733 2223 3689999999999 7     99986 55


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410          101 YGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL  180 (589)
Q Consensus       101 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  180 (589)
                      .+.+..+++...+++..  |                ..+.+.+.+.+++.+++.+...+...++..|++|+      ++|
T Consensus        86 ~~~i~~~~~~~~~a~~~--~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~------~~r  141 (491)
T PRK11010         86 ATQLLLLVAIAAMGFLE--P----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA------EER  141 (491)
T ss_pred             HHHHHHHHHHHHHHHcC--C----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------hhh
Confidence            67777777777777753  1                12567788889999999999999999999999986      447


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHhHHHHHHHHHHHHHHH
Q 045410          181 ESFFNWWYFSFTVALVVALTAVVYIQT-NVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      ++..++...+.++|..+++.+++++.+ ..|||..|++.+++.++..+..
T Consensus       142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            788888888999999999999999988 5799999998776655554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=1.1e-18  Score=209.38  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=124.7

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDG--ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +.+.....+...++..+...+....+..++.+.++.+.  ...+++.+++.+...++++++|+++||+ |||++++++.+
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~   85 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKL   85 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHH
Confidence            34455555566666666666666666667766666654  4478999999999999999999999995 99999999987


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +.+++.+++.++...                  .+.+.++++|+++|++.+...++..+++.|++|+      ++|++++
T Consensus        86 ~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~  141 (1146)
T PRK08633         86 FEVGLTLLIVLAYYL------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK------ENLSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHHHHH------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc------ccchhhh
Confidence            766666555443210                  1578899999999999999999999999999987      3477889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTN  208 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~  208 (589)
                      ++...+.++|.++|+.+++++.+.
T Consensus       142 ~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        142 GLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999875

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.1e-19  Score=191.24  Aligned_cols=377  Identities=15%  Similarity=0.155  Sum_probs=240.8

Q ss_pred             hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCch
Q 045410           59 KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGW  138 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  138 (589)
                      +++++..|.+++.+.+..++.++++++|+++||+ |-|+++..+.++.++++++..++..                   .
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------~  126 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------I  126 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence            5889999999999999999999999999999995 9999999999999999999988762                   2


Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHhHHH
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN-VSWILGFAI  217 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~  217 (589)
                      +.+.+++.|+++|++.|...|+...+.+.+.|+      ++|++..++.+.+..+|.+++..++|++.+. +||+++|++
T Consensus       127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~  200 (466)
T KOG2532|consen  127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV  200 (466)
T ss_pred             cchhhHHHHHHhHHHHhHHHhhhhceeeeECCH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence            445789999999999999999999999999998      5688999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhh
Q 045410          218 PTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRC  297 (589)
Q Consensus       218 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (589)
                      .+.+.++..++++......+.++|.-+..+ .    ....+++....                                 
T Consensus       201 ~g~~g~i~~~~w~~~~~d~P~~h~~is~~E-l----~~I~~~k~~~~---------------------------------  242 (466)
T KOG2532|consen  201 FGIVGLIWFILWFLFYSDSPSKHPNISEKE-L----KYIEKGKSEAH---------------------------------  242 (466)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCCCCCHHH-H----HHHHhcccccc---------------------------------
Confidence            998888777776665443232222211100 0    00001100000                                 


Q ss_pred             hhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhH-HHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccc
Q 045410          298 LDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAM-FPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPP  376 (589)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (589)
                                    .+...+.||+...+    + ..++.. +..+.....+++..+ +.+.+.....+++..      ..
T Consensus       243 --------------~~~~~~vP~~~i~t----s-~~vwai~~~~f~~~~~~~~l~~-y~PtY~~~VL~f~v~------~~  296 (466)
T KOG2532|consen  243 --------------VKKKPPVPYKAILT----S-PPVWAIWISAFGGNWGFYLLLT-YLPTYLKEVLGFDVR------ET  296 (466)
T ss_pred             --------------cCCCCCCCHHHHHc----C-HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHhCCChh------hh
Confidence                          00001345522111    0 111111 111222222222222 223333334444442      36


Q ss_pred             cccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccch
Q 045410          377 GWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRI--TIGILMAILSLLVAGFVERKRRLSALQHGSFESPIS  454 (589)
Q Consensus       377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i--~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  454 (589)
                      +++..+..+...+...+.+.+.|++.+| .-.   .+..+++  .+++...++.++.+++..               ..+
T Consensus       297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~---------------~~~  357 (466)
T KOG2532|consen  297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS---------------DEH  357 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC---------------CCc
Confidence            6677777777777777777775555554 211   1222233  556666667777666653               111


Q ss_pred             hHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCc
Q 045410          455 ILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNK  534 (589)
Q Consensus       455 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~  534 (589)
                      .+..++.+.+.....++..+..+.-..+.+ ++..+..+|+.++...+...++|.+++.+.. .            + +.
T Consensus       358 ~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~------------~-t~  422 (466)
T KOG2532|consen  358 RLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D------------N-TR  422 (466)
T ss_pred             chHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C------------C-CH
Confidence            112222222211112222222222222224 5669999999999999999999999987763 1            0 12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          535 DTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       535 ~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      ..-.++|++.+++.++..+++.++.
T Consensus       423 ~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  423 EEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHHHHHhchheeEee
Confidence            2234578888888888887766663

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=3.6e-18  Score=184.88  Aligned_cols=354  Identities=14%  Similarity=0.099  Sum_probs=223.0

Q ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 045410           35 LGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMT  114 (589)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~  114 (589)
                      ....++..++......-++-++ .++.-|+...+.+.....+-..+..+++|.++||+ .|||+++.+-++..+....++
T Consensus        16 w~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~   93 (524)
T PF05977_consen   16 WIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLA   93 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHH
Confidence            3355555555443333334333 35667899999999999999999999999999995 999999999988877666555


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      +.....                ..+++.+++.-++.|++.+...|+.++++.|+.|++      +...+.++.....|+.
T Consensus        94 ~l~~~~----------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~nia  151 (524)
T PF05977_consen   94 VLAFFG----------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIA  151 (524)
T ss_pred             HHHHhC----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHH
Confidence            432111                236788888899999999999999999999999873      4667888888899999


Q ss_pred             HHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccC
Q 045410          195 LVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYD  274 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (589)
                      -++||.++|.+...+|-.+.|.+.++..++.+.++...++..   +++..+.+...+.+    +.               
T Consensus       152 r~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l----~~---------------  209 (524)
T PF05977_consen  152 RIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFSAL----RE---------------  209 (524)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhhhH----HH---------------
Confidence            999999999999988988899988776665544433322211   11110100000000    00               


Q ss_pred             CCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 045410          275 PPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQ  354 (589)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  354 (589)
                                               .....                   ..  ....+.++..  .+++........ ..
T Consensus       210 -------------------------G~ryv-------------------~~--~~~l~~~l~~--~~~~~l~~~a~~-aL  240 (524)
T PF05977_consen  210 -------------------------GLRYV-------------------RS--SPPLRSVLLR--SFLFNLFASAVW-AL  240 (524)
T ss_pred             -------------------------HHHHH-------------------hc--chHHHHHHHH--HHHHHHhhhHHH-Hh
Confidence                                     00000                   00  0001111110  011111111111 11


Q ss_pred             hhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 045410          355 NTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGF  434 (589)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~  434 (589)
                      .+....+..+.+..      ..+.+.....++.+++..+..+    +.+|+       +..+.+..+.++.+++++.+++
T Consensus       241 lPl~a~~~l~~~a~------~yGll~a~~gvGai~Gal~~~~----l~~~~-------~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  241 LPLFARDVLGGGAS------GYGLLLAAFGVGAILGALLLPR----LRRRL-------SSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             hhHHHHHHhCCcHH------HHHHHHHHHHHHHHHHHHHHHH----hhccc-------CcchhhHHHHHHHHHHHHHHhc
Confidence            11111111111111      1122223334444444444222    23333       3334667778888887777776


Q ss_pred             HHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          435 VERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNII  514 (589)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  514 (589)
                      ..                 +.+..++..++.|++........++.+.+.+|+++||++.+++++....+..+|..+.|.+
T Consensus       304 ~~-----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  304 SP-----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             ch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53                 4555666778888888888888899999999999999999999999999999999999988


Q ss_pred             hhc
Q 045410          515 HGL  517 (589)
Q Consensus       515 ~~~  517 (589)
                      .+.
T Consensus       367 a~~  369 (524)
T PF05977_consen  367 ADH  369 (524)
T ss_pred             HHH
Confidence            763

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=1.9e-18  Score=185.21  Aligned_cols=355  Identities=14%  Similarity=0.144  Sum_probs=213.4

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchH-HHHHHHHHHHHHHHHHH
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFR-TLLYGSIASFLGMGIMT  114 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~l~~~~~~~~~~~~~~~  114 (589)
                      +.....+..+.++++.|+++.+|+++.+.|.+.++..+..++..|+.|+++||.   +|||| .++.+.+.+.++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            334455555668899999999999999999999999999999999999999983   48855 56677777877777776


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      ..++.+.               ......+++.+++.+++.+.......++..|..++.     ++|++..++.....++|
T Consensus        89 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-----~~R~~~~~~~~~~~~~g  148 (437)
T TIGR00792        89 TTPDFSA---------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP-----RERESLSTFRRFGATLG  148 (437)
T ss_pred             hCCCCCc---------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH-----HHHHHHHHHHHHHHHHH
Confidence            6442111               113456677778888888888888888888877542     45777888877788888


Q ss_pred             HHHHHHHHHHHHh-------hcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCC
Q 045410          195 LVVALTAVVYIQT-------NVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQA  267 (589)
Q Consensus       195 ~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (589)
                      ..+++.+.+.+..       ..+|++.+.+.+++.++..+..+...++.++..+++++                      
T Consensus       149 ~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~----------------------  206 (437)
T TIGR00792       149 GLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE----------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc----------------------
Confidence            8777766555542       35799888877666555544333322221100000000                      


Q ss_pred             CCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHH
Q 045410          268 SGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFC  347 (589)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  347 (589)
                      +        +               .  +..+.                   +     +.....|.....+.   ...+.
T Consensus       207 ~--------~---------------~--~~~~~-------------------~-----~~l~~~~~~~~~~~---~~~~~  234 (437)
T TIGR00792       207 K--------K---------------L--SLKQI-------------------F-----KALFKNDQLLILCL---AYLFY  234 (437)
T ss_pred             c--------C---------------C--CHHHH-------------------H-----HHHhCCHHHHHHHH---HHHHH
Confidence            0        0               0  00000                   0     00000111111111   11111


Q ss_pred             HHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHH
Q 045410          348 FLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAIL  427 (589)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i  427 (589)
                      +...............   ...+ .....+.+..+..+..+++.++.+++    .+|+++|       +.+.++.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g~~-------~~~~~~~~~~~~  299 (437)
T TIGR00792       235 NLAFNIKNGVQVYYFT---YVLG-DPELFSYMGSIAIVAGLIGVLLFPRL----VKKFGRK-------ILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHcchhheeEe---eecC-ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHH
Confidence            1111111111111100   0000 00111223333445555555665444    6666543       356777777777


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccC-------chhhHHHHHHHHHHH
Q 045410          428 SLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP-------ESMRTVSGAVFFLSL  500 (589)
Q Consensus       428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~  500 (589)
                      ++++..+..                .+.+..++..++.+++.+...+..+++..|..|       ++.+|.+.|++++..
T Consensus       300 ~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  363 (437)
T TIGR00792       300 GYLIFFFAG----------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR  363 (437)
T ss_pred             HHHHHHHcc----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence            766655431                123344556677788888888888888887765       567899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 045410          501 SISSYINSALVNIIHGLT  518 (589)
Q Consensus       501 ~lg~~l~~~l~~~i~~~~  518 (589)
                      .+|+.+++.+.+.+.+..
T Consensus       364 ~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       364 KLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999988765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=7.7e-19  Score=177.69  Aligned_cols=391  Identities=13%  Similarity=0.088  Sum_probs=247.9

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .+.|.++. -...+...+....+.+.+.+++.+++|+|+.|.+++.++..+...+..++-|.+.|| +|.|++..++.++
T Consensus        11 ~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l   88 (417)
T COG2223          11 IARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLL   88 (417)
T ss_pred             chhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHH
Confidence            34444443 334444455556667888888999999999999999999999999999999999999 5999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..+-.+..+++.+-|                  +.+.+++.+++.|++ |..+++..++++..||++      .++.+++
T Consensus        89 ~~IP~~~~~~a~~~~------------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~------~qG~AlG  143 (417)
T COG2223          89 LLIPCLGLAFAVTYP------------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKE------KQGLALG  143 (417)
T ss_pred             HHHHHHHHHHHccCC------------------chHHHHHHHHHHhcc-cceehcccccccccCChh------hhhHHHH
Confidence            999999999987433                  447899999999999 556788899999999984      4667899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc---hhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhcccc
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVS---WILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKV  262 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (589)
                      ++. ..|+|..+...+++++....+   |+....+.....++..+.+++..+..++..+..++..               
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------  207 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------  207 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------
Confidence            988 889999999999999999888   8877776666665555554444332211111111100               


Q ss_pred             ccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHH
Q 045410          263 NLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWI  342 (589)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  342 (589)
                        + .+                             ++  .+          ...++.|           ...+.+...+.
T Consensus       208 --~-~~-----------------------------~~--~v----------~~~~~~W-----------~lsllY~~tFG  232 (417)
T COG2223         208 --P-AQ-----------------------------LK--AV----------FSNKDTW-----------LLSLLYFATFG  232 (417)
T ss_pred             --h-hH-----------------------------HH--HH----------hcCcchH-----------HHHHHHHHHHH
Confidence              0 00                             00  00          0001111           11222222221


Q ss_pred             HHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHH
Q 045410          343 TGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGI  422 (589)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~  422 (589)
                      .-+    .+..+.+.+.  ..+...+.    ..++......++...+..|+.+++    .||++.+       +...+.+
T Consensus       233 ~Fv----gfs~~l~~~~--~~~fg~~~----~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~-------rv~~~~f  291 (417)
T COG2223         233 GFV----GFSAYLPMYL--VTQFGLSP----VTAGLIAFLFPLIGALARPLGGWL----SDRIGGR-------RVTLAVF  291 (417)
T ss_pred             HHH----HHHHHHHHHH--HHhcCCCh----hhHHHHHHHHHHHHHHHHhccchh----hhhccch-------hHHHHHH
Confidence            111    1111112111  11111111    334455555666666777777776    6665433       3566667


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHH
Q 045410          423 LMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSI  502 (589)
Q Consensus       423 ~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l  502 (589)
                      ..++++..+..+...          ......+....+..++..++..+...-..+.++..++|+ +-|.+.|+.....++
T Consensus       292 ~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~l  360 (417)
T COG2223         292 VGMALAAALLSLFLT----------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGL  360 (417)
T ss_pred             HHHHHHHHHHHcccc----------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccc
Confidence            777776666655421          000012222223333333333333344445555666655 588888998888899


Q ss_pred             HHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 045410          503 SSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRF  562 (589)
Q Consensus       503 g~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~  562 (589)
                      |++.-|...+...+.++                .+...|+++..+.+++.++++....+.
T Consensus       361 GGf~lp~~~g~~~~~tg----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         361 GGFFLPLAFGVSLDLTG----------------SYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             cccchhHHHHHHHHhcc----------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99888888888876542                245678888888888888877776554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=1.3e-18  Score=208.50  Aligned_cols=144  Identities=13%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             HHHHhcCCch-hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH--HHHHHHHHHHH-hhcCCCCCCCCCCCC
Q 045410           55 YLRTKYNMDG-ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI--ASFLGMGIMTL-TASIPKLRPPDCTGA  130 (589)
Q Consensus        55 yl~~~lg~s~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~--~~~~~~~~~~~-~~s~~~~~~~~~~~~  130 (589)
                      .+.++.+.+. ...++..+++.+.+.++.+++|+++||+ |||+++.....  +...+.....+ ..             
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~-------------  106 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN-------------  106 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence            3444444433 4467788899999999999999999995 99998644222  22222222222 23             


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045410          131 QCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                              +.+.++++|+++|++.+...|+..+++.|++|+      ++|++++++.+++.++|.++||.++|++.+..+
T Consensus       107 --------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~  172 (1140)
T PRK06814        107 --------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNK------DELLGANALVEAGTFIAILLGTIIGGLATISGN  172 (1140)
T ss_pred             --------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                    678899999999999999999999999999987      347778999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHH
Q 045410          211 WILGFAIPTGCFFLSI  226 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~  226 (589)
                      |++.|.+..+..++.+
T Consensus       173 ~~~~~~~~~~~~~~~~  188 (1140)
T PRK06814        173 FVILVALLMGIAVLGW  188 (1140)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9988854444444333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.85  E-value=1.2e-18  Score=183.33  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=113.7

Q ss_pred             HHHHHHHHhcC--CchhHHHHHHHHH-----HHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 045410           51 NMTVYLRTKYN--MDGILLVNVVSIW-----GGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLR  123 (589)
Q Consensus        51 ~l~~yl~~~lg--~s~~~~~~~~~~~-----~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~  123 (589)
                      +...++.++..  .++.+.+.+.+..     .+...++.++.|+++|| +||||+++.+.++..++.++++++.+.+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            45556655543  4556665554432     22334688999999999 599999999999999999999887632210 


Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045410          124 PPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVV  203 (589)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  203 (589)
                                  .......++++|+++|++.+...+...+++.|.+|+      ++|+...++.+.+..+|..+++.+..
T Consensus        92 ------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~G~~i~~~~~~  153 (394)
T TIGR00883        92 ------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP------GKRGFYGSFQQVGAPVGLLLAALTVL  153 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc------ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        001234688999999999999999999999999986      34667888888888999999988776


Q ss_pred             HHH--------hhcchhHhHHHHHHHHHHH
Q 045410          204 YIQ--------TNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       204 ~l~--------~~~g~~~~f~~~~~~~~i~  225 (589)
                      .+.        +.++||+.|.+..++.++.
T Consensus       154 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       154 LLSYLLGDDALLEWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             HHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence            654        3568999988766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=7.5e-19  Score=183.63  Aligned_cols=159  Identities=13%  Similarity=0.018  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      .+......++....++...+.++.++.+++|+|..+.+++.+++.++..++.++.|+++||+ |||+.++.+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            34455566666666676777777789999999999999999999999999999999999995 99999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      ++++++.                    .+.+.++++|+++|++.+. .+...+++.|.+|+      ++|++..+++...
T Consensus        82 ~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~------~~r~~~~~~~~~~  134 (366)
T TIGR00886        82 LWAGLAV--------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK------KIQGTALGLAAGW  134 (366)
T ss_pred             HHHHHHh--------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH------hhhhHHHHHHHHH
Confidence            8888754                    0457788999999999665 46678899999986      3477788888877


Q ss_pred             HHHHHHHHHHHHHHHHh----------hcchhHhHHH
Q 045410          191 FTVALVVALTAVVYIQT----------NVSWILGFAI  217 (589)
Q Consensus       191 ~~~g~~~~~~~~~~l~~----------~~g~~~~f~~  217 (589)
                      .++|..+++.+++.+..          ..+||+.|++
T Consensus       135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            78888888777766654          2379999844

>TIGR00896 CynX cyanate transporter

Probab=99.84  E-value=2.7e-18  Score=178.98  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=123.9

Q ss_pred             HHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcC
Q 045410           40 FEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASI  119 (589)
Q Consensus        40 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~  119 (589)
                      ++.-.++.....+.+.+.+++|++.++.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.+ ...  
T Consensus        10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~--   85 (355)
T TIGR00896        10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP--   85 (355)
T ss_pred             hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc--
Confidence            3333444444556667788999999999999999999999999999999999 599999999998888777666 433  


Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 045410          120 PKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVAL  199 (589)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  199 (589)
                                         +.+.+++.|++.|++.+...+..+.++.|.+|+       +|++.+++++...++|..+++
T Consensus        86 -------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~  139 (355)
T TIGR00896        86 -------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAA  139 (355)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHH
Confidence                               567788999999999998888888888887752       366788898889999999999


Q ss_pred             HHHHHHHhhcc--hhHhHHHHHHH
Q 045410          200 TAVVYIQTNVS--WILGFAIPTGC  221 (589)
Q Consensus       200 ~~~~~l~~~~g--~~~~f~~~~~~  221 (589)
                      .+++.+.+..+  ||+.|.+.++.
T Consensus       140 ~~~~~l~~~~~~~w~~~f~~~~~~  163 (355)
T TIGR00896       140 AATVPLAQHSGGHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99888877653  88888765543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.84  E-value=1.7e-17  Score=176.30  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=133.5

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL  115 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~  115 (589)
                      +..|+.....+++...+.+.+++++|+++.+.+++.+.+.+++.++.++.|++.|| +|||++++.+.++++++.+++..
T Consensus         9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~   87 (410)
T TIGR00885         9 TSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWP   87 (410)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHH
Confidence            33344333445677677778899999999999999999999999999999999999 59999999999999999888755


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVAL  195 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (589)
                      +...                  .+++.++++|++.|+|.|...+..++++.+..|++      .|++..++.+...++|.
T Consensus        88 ~~~~------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~  143 (410)
T TIGR00885        88 AAEI------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGS  143 (410)
T ss_pred             HHhh------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHH
Confidence            4311                  15778999999999999999999999999988753      35566888888889999


Q ss_pred             HHHHHHHHHHHh--------------------------hcchhHhHHHHHHHHHHHH
Q 045410          196 VVALTAVVYIQT--------------------------NVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       196 ~~~~~~~~~l~~--------------------------~~g~~~~f~~~~~~~~i~~  226 (589)
                      .++|.+++.+..                          ..+||++|.+.+++.++..
T Consensus       144 ~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       144 IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887742                          2469999987666544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.84  E-value=2.6e-17  Score=173.51  Aligned_cols=154  Identities=10%  Similarity=-0.052  Sum_probs=113.9

Q ss_pred             HHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccch----HHHHHHHHHHHHHHHHH
Q 045410           38 ETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRF----RTLLYGSIASFLGMGIM  113 (589)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr----~~l~~~~~~~~~~~~~~  113 (589)
                      .+...++...+.++++.|++ ++|.|..+.|++.+++.+...++.++.|.++||+ |||    +.+.++.++.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence            44444555666678888885 6899999999999999999999999999999995 984    3332222111  11111


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV  193 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  193 (589)
                      ...+                     +.+.+++.|++.|++.+...|...++..+. .+       +|++.++......++
T Consensus        89 ~~~~---------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~l  139 (382)
T PRK11128         89 FGAH---------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSI  139 (382)
T ss_pred             Hhcc---------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHH
Confidence            1212                     678888999999999999999888887775 22       233446666667789


Q ss_pred             HHHHHHHHHHHHHhhcchhHhHHHHHHHHHH
Q 045410          194 ALVVALTAVVYIQTNVSWILGFAIPTGCFFL  224 (589)
Q Consensus       194 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i  224 (589)
                      |..+||.+++++.+++|||..|++.++..++
T Consensus       140 g~~igp~lgg~l~~~~g~~~~f~~~~~~~~~  170 (382)
T PRK11128        140 AFVIGSALTGKLVSWFGEQAILWILTAGVAS  170 (382)
T ss_pred             HHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            9999999999999999999999876654433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.82  E-value=1.2e-16  Score=170.27  Aligned_cols=439  Identities=12%  Similarity=0.027  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhh---cccchHHHHHH-HHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDT---YLGRFRTLLYG-SIASF  107 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grr~~l~~~-~~~~~  107 (589)
                      +.+..+.+...+++-...+++++|+ +++|.+..+.+.+..+..+...+.+|+.|+++||   .+||||.++.+ .+...
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            3344455555666555566677765 6899999999999999999999999999999994   25999999886 55565


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++.++++++.+...+..+.-. +   .......+..+++..+.-++.....+...++++|++|+++    +++..+.++.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~-~---~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~  157 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLD-K---KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYF  157 (477)
T ss_pred             HHHHHHHhCchhhhhcccccc-c---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHH
Confidence            666667665532211000000 0   0000111334444455566777778888999999999753    1234678888


Q ss_pred             HHHHHHHHHHHHHHHHHHH--hhc-------------chhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQ--TNV-------------SWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKV  252 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~--~~~-------------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (589)
                      ....++|+++|+.++++..  +.+             +.+..|++.+++.++..+...+..++.+..++++..       
T Consensus       158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-------  230 (477)
T TIGR01301       158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-------  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-------
Confidence            8899999999999887752  211             567888888877776666555544432211110000       


Q ss_pred             HHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHH
Q 045410          253 ITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLK  332 (589)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (589)
                                   +++    ++...+            + +.                      ...++.+.+..+.--|
T Consensus       231 -------------~~~----~~~~~~------------~-~~----------------------~~~~~~i~~~~~~mP~  258 (477)
T TIGR01301       231 -------------NSE----AAPPSK------------H-GE----------------------EAFFGELFGAFKYLPR  258 (477)
T ss_pred             -------------hhh----cccccc------------c-ch----------------------hhhHHHHHHHHHHCCH
Confidence                         000    000000            0 00                      0000000000001113


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCc--cccc---ccccchhhHHHHHHHHHhhhhHHHHhhhhhcC
Q 045410          333 LLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGS--FNVP---PGWMGLISMLTLSTWIFFYERVFVPLSQKMTG  407 (589)
Q Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~  407 (589)
                      .+.+.+...++..+-|..+..+.+.+..+...-..+-..  ++.-   ..+...++.+...    +.+.++.++.+|.++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence            344455556666666666666666554432211111000  0000   1112222233222    333344555777764


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhc-cCCCCccch-hHHHHHHHHHHHHHHHhHhhhHHHHHhhc
Q 045410          408 KKIRLTMRQRITIGILMAILSLLVAGFVERKRRL--SALQ-HGSFESPIS-ILVLVPQFSFSGLTEGFAAVAVMEFLTTQ  483 (589)
Q Consensus       408 k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~~~~~~  483 (589)
                      |+      ..-.++.++.+++++...+......+  .... +.....+.. .+..+..+.+.|+.........++++.+.
T Consensus       335 ~k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       335 GK------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             ch------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence            32      24477888888888877765410000  0000 000000111 35566677888888888888889999999


Q ss_pred             cCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045410          484 LPE--SMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACR  561 (589)
Q Consensus       484 ~P~--~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  561 (589)
                      .|+  +..|..+|+.|.+-.+.+.+.....|.+.+..++               +..+++.+.++.++++.++.++..|+
T Consensus       409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~---------------~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG---------------GNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC---------------CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            995  4559999999999999999999888876543321               11346677777777887877777666


Q ss_pred             cc
Q 045410          562 FV  563 (589)
Q Consensus       562 ~~  563 (589)
                      .+
T Consensus       474 ~~  475 (477)
T TIGR01301       474 PR  475 (477)
T ss_pred             CC
Confidence            54

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.82  E-value=1.7e-16  Score=168.39  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-----cchH-HHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-----GRFR-TLLYGSIASFLG  109 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grr~-~l~~~~~~~~~~  109 (589)
                      .+.+.....+.-...-+|.|++ +.|++.++.|++..+...  .+..++.|+++|| +     |||| .++++.++.+++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHH
Confidence            3555556665556677888887 459999999999776665  6999999999999 6     7876 688888888877


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ...+++...                  ..+.+.+++..++.++..+...+...+++.|.+|+      ++|++..++...
T Consensus        82 ~~~l~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~------~~r~~~~~~~~~  137 (402)
T PRK11902         82 IAAMAFCPP------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP------EERGAGAAVKVL  137 (402)
T ss_pred             HHHHHhcCc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------hhhhHHHHHHHH
Confidence            777777531                  11466677777778888888999999999999876      347778888888


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cchhHhHHHHHHHHHHHHH
Q 045410          190 SFTVALVVALTAVVYIQTN-VSWILGFAIPTGCFFLSIV  227 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~~  227 (589)
                      +.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus       138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            8899999999998888885 5999999987766554433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=2.9e-17  Score=171.24  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=119.8

Q ss_pred             hhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHhhcCC
Q 045410           46 MSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY----LGRFRTL-LYGSIASFLGMGIMTLTASIP  120 (589)
Q Consensus        46 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~l-~~~~~~~~~~~~~~~~~~s~~  120 (589)
                      +++.....+.+.+++|+|.++.++.... .+...+ .++.|+++||+    +||||.+ +.+.++.++....+++..+  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--
Confidence            3445555556667889999999999655 334444 89999999994    3899975 5666667666666666431  


Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH
Q 045410          121 KLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALT  200 (589)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  200 (589)
                                      ..+.+.+....++.+++.+...+...+++.|.+|+      ++|+.+.++...+.++|.++++.
T Consensus        80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~r~~~~~~~~~~~~~G~~~~~~  137 (356)
T TIGR00901        80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD------EELGYGSTIYIVGYRAGMLLSGS  137 (356)
T ss_pred             ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhchHHHHHHHHHHHHHHHHHH
Confidence                            12455566666778888888899999999999976      45777888888899999999999


Q ss_pred             HHHHHHhhcc--------hhHhHHHHHHHHHHHHHHHH
Q 045410          201 AVVYIQTNVS--------WILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       201 ~~~~l~~~~g--------~~~~f~~~~~~~~i~~~~~~  230 (589)
                      +++.+....+        ||..|++.++..++..+..+
T Consensus       138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            9999988888        99999987776655544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.79  E-value=1.5e-16  Score=165.37  Aligned_cols=175  Identities=12%  Similarity=0.043  Sum_probs=142.1

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGIL-LVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +.|+...+++|.- ..-.-+=...++..+|+.+++|+++.| .|.+.+++..++.++.+++|+++|| +|.|+++.++.+
T Consensus        23 ~~W~~~~~~lC~f-GF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l  100 (511)
T TIGR00806        23 KSWRVLVLYLCFY-GFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQAL  100 (511)
T ss_pred             cchhHHHHHHHHH-HHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHH
Confidence            4677655433321 111112344567788999999999999 9999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      .+++..++++++.                     +...+.+.|++.|++.|... +...++..++|+      ++|+++.
T Consensus       101 ~Wsl~t~L~~fa~---------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~------kER~rat  152 (511)
T TIGR00806       101 SFVCVWLLLLLGT---------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP------SRYQRAA  152 (511)
T ss_pred             HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH------HHHHHHH
Confidence            9999999999987                     67789999999999999999 999999999997      6788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHH---HHHHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAI---PTGCFFLSIVVFLI  231 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~---~~~~~~i~~~~~~~  231 (589)
                      +++..+.++|.+++++++++ ...+||++-+.+   ......++++..++
T Consensus       153 si~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       153 AYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999 456899865443   33444444444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.79  E-value=4e-16  Score=169.15  Aligned_cols=149  Identities=9%  Similarity=-0.024  Sum_probs=106.0

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhh----hcccch-HHHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSD----TYLGRF-RTLLYGSIASFLGM  110 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr-~~l~~~~~~~~~~~  110 (589)
                      +..+...+.+..+.++++.|+++.+|++..+.|.+..+..+..++..|+.|+++|    | +||| +.++++.+.+.++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence            3455556666677788999999999999999999999999999999999999999    6 4995 55555666666665


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      .++...   |...+            ......+++..++.+++..+......++..|+.++.     ++|.+..++-...
T Consensus        92 ~llf~~---p~~~~------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~-----~eR~~l~~~~~~~  151 (473)
T PRK10429         92 FLLFSA---HLFEG------------TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK-----REREQLVPYPRFF  151 (473)
T ss_pred             HHHHcC---CCCCc------------cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH-----HHHHHHHHHHHHH
Confidence            555432   21100            112334455556677888888888889999987543     4577777775666


Q ss_pred             HHHHHHHHHHHHHHH
Q 045410          191 FTVALVVALTAVVYI  205 (589)
Q Consensus       191 ~~~g~~~~~~~~~~l  205 (589)
                      .++|+.+.+.+...+
T Consensus       152 ~~ig~~~~~~~~~~~  166 (473)
T PRK10429        152 ASLAGFVTAGFTLPF  166 (473)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677766665554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.79  E-value=7.1e-16  Score=166.65  Aligned_cols=152  Identities=14%  Similarity=0.145  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      .....++.+++|-+ ....|+.+...+..+++.++.|.|+|. ||||..++.+.++..+|+++++.++            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            44557888899965 667788888999999999999999999 5999999999999999999999988            


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNV  209 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  209 (589)
                               +...++++..+.|+|.|... .....++|..|.      +.|..+..+......+....++.++..+..+.
T Consensus       130 ---------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~  193 (599)
T PF06609_consen  130 ---------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN------KWRGLGLAIASIPFIITTWISPLIAQLFAAHS  193 (599)
T ss_pred             ---------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc------chhhhHhHHHHHHHHhhhcccHHHHHHhccCC
Confidence                     66779999999999977765 456668999875      23444444444444444445666666665567


Q ss_pred             chhHhHHHHHHHHHHHHHHHHH
Q 045410          210 SWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       210 g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +|||.|++.++...++++..++
T Consensus       194 ~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  194 GWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             CcchHHHHHHHHHHHHHHHHHH
Confidence            8999999988876666554333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=7.2e-16  Score=165.84  Aligned_cols=170  Identities=11%  Similarity=0.083  Sum_probs=117.6

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHH-HHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRT-LLYGSIASFLGMG  111 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~-l~~~~~~~~~~~~  111 (589)
                      +..+.....+..+..+++.|+++.+|++..+.|.+..+..+..++..|+.|+++||.   +||||. ++.+.+...+...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            344555566666778899999999999999999999999999999999999999993   377555 5566676766665


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      ++...   |....            ......+++..++.+++..+......++.+|+.+++     ++|.+..++.....
T Consensus        96 l~f~~---p~~~~------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~-----~eR~~l~~~r~~~~  155 (444)
T PRK09669         96 LTFYT---PDFGA------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP-----RERHSLQSWRFALS  155 (444)
T ss_pred             HHHhC---CCCCc------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH-----HHHHHHHHHHHHHH
Confidence            54443   22110            123455555556667666677777888999987543     45677777777777


Q ss_pred             HHHHHHHHHHHHHHHh-------hcchhHhHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQT-------NVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~i~  225 (589)
                      ++|..+++.+...+..       ..+|+..+.+.+++..+.
T Consensus       156 ~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        156 FIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            8888777765544433       235666665555444333

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=5.3e-16  Score=167.10  Aligned_cols=150  Identities=7%  Similarity=0.004  Sum_probs=98.9

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHHH-HHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRTL-LYGSIASFLGMG  111 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l-~~~~~~~~~~~~  111 (589)
                      +..+.....+..+.++++.|+++.+|++..+.|.+.++..+...+..++.|+++||.   +||||.. +.+.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            455666777666778889999999999999999999999999999999999999993   3777755 555554544444


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH--
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF--  189 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--  189 (589)
                      ++.... . .+..            ....+..++..++.+++.+...+...++..++..+.     ++|.+..++-.+  
T Consensus        95 ~~~~~~-~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~-----~~r~~~~~~r~~~~  155 (448)
T PRK09848         95 LVFWVP-T-DWSH------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP-----QSRARLGAARGIAA  155 (448)
T ss_pred             HHHhCc-C-CCCc------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH-----HHHHHHHHHHHHHH
Confidence            332211 0 0000            112333444556778888888888888877776553     234455444332  


Q ss_pred             ---HHHHHHHHHHHHHHH
Q 045410          190 ---SFTVALVVALTAVVY  204 (589)
Q Consensus       190 ---~~~~g~~~~~~~~~~  204 (589)
                         ..+++..++|.+.+.
T Consensus       156 ~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        156 SLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence               234555566655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=2.6e-15  Score=157.99  Aligned_cols=382  Identities=12%  Similarity=0.107  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIM  113 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~  113 (589)
                      +....|+..+.+-...++++.|++ +.|+|..|+|.+.++..+...+++++.|+++||+..+||.+.+..++..+.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            444556666666667788999997 5789999999999999999999999999999996346777777666666655555


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV  193 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  193 (589)
                      ....                     +.+.+++..++..+......|..-++..+...+  .+.+-+|-|..      +++
T Consensus        86 ~~~~---------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlw------GSi  136 (400)
T PF03825_consen   86 AFSS---------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLW------GSI  136 (400)
T ss_pred             HHhc---------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhh------hhH
Confidence            4443                     456666777777888777778877777776553  22222333443      344


Q ss_pred             HHHHHHHH-HHHHHhhcc---hhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCC
Q 045410          194 ALVVALTA-VVYIQTNVS---WILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASG  269 (589)
Q Consensus       194 g~~~~~~~-~~~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (589)
                      |-+++... ++.+....+   ....+++.+...++... +.+..|+.+   ++++..               ....+.  
T Consensus       137 Gf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~---~~~~~~---------------~~~~~~--  195 (400)
T PF03825_consen  137 GFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG-FALFLPKTP---PKRSAK---------------ESVKKL--  195 (400)
T ss_pred             HHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH-HHHhCCCCc---cccccC---------------CCcccc--
Confidence            44444322 222222222   22344544433222221 122223211   110000               000000  


Q ss_pred             CCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHH-HHHHHHHHHH
Q 045410          270 NSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMF-PVWITGIFCF  348 (589)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  348 (589)
                                                ...+                   .++.+     ++ ++.+..+ ..++..... 
T Consensus       196 --------------------------~~~~-------------------~~~ll-----k~-~~~~~Fll~~~l~~~~~-  223 (400)
T PF03825_consen  196 --------------------------LGLD-------------------ALKLL-----KN-PRFLVFLLAAFLIGISH-  223 (400)
T ss_pred             --------------------------cchH-------------------HHHHh-----cC-ccHHHHHHHHHHHHHHH-
Confidence                                      0000                   00000     00 1111111 111111111 


Q ss_pred             HhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 045410          349 LAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILS  428 (589)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~  428 (589)
                      ..+..+.+.+.....+.+...      .+....+..+.=++...+    ..+..+|+       +..+.+.++++..++=
T Consensus       224 ~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~----~~~~~~r~-------g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  224 AAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFF----SGRFLKRF-------GIKWLLLLALVAYAVR  286 (400)
T ss_pred             HHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHH----HHHHHHhc-------CHHHHHHHHHHHHHHH
Confidence            112222222222111111100      111111111111122122    23335554       5566888899888888


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCccchhHH----HHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHH-HHHH
Q 045410          429 LLVAGFVERKRRLSALQHGSFESPISILV----LVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLS-LSIS  503 (589)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg  503 (589)
                      ..++.+..                .+.+.    .....++.|+..++...+...++.+.+|++.|++++++++.. .++|
T Consensus       287 ~~l~a~~~----------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg  350 (400)
T PF03825_consen  287 WLLYAYFS----------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLG  350 (400)
T ss_pred             HHHHHHhc----------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence            88887762                12222    222345789988899999999999999999999999998765 5899


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 045410          504 SYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRF  562 (589)
Q Consensus       504 ~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~  562 (589)
                      ..+|+.++|.+.|..+..+..           .+..+|.+.+++.++..+++++..|+.
T Consensus       351 ~~iG~~igG~l~~~~g~~~~~-----------~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  351 GAIGSLIGGWLYDAFGARGMF-----------DWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHhcchhhh-----------hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999998753221100           123456677777777777777775553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=6.5e-15  Score=155.65  Aligned_cols=176  Identities=13%  Similarity=-0.018  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHH--HHHHHHHHHhhhhhh-hHHhhhcccchHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNV--VSIWGGSSSLTAIPG-ALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      ...+....+...+.+..+.+.++.|++ +.|.|.++.|.+  .+.......+..|+. ++.+|| .||||..++...+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            344555677777776666677888886 669999999997  466677777777777 668999 599999866654332


Q ss_pred             H-HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          108 L-GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       108 ~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      . .........  +.               ......++....+.++..+...+..-++..|..++      ++++...+.
T Consensus        81 ~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~------~~~~~~~~~  137 (390)
T TIGR02718        81 SACLASLALVG--PD---------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG------RTLAKGNAV  137 (390)
T ss_pred             HHHHHHHHcCC--cc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhhHHHHH
Confidence            2 222222211  10               00122333334444555555555555555554332      345556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ..++..+|..+|+...+++.+.+|||..|++.+++.++..+..++
T Consensus       138 ~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       138 QIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            667778899999988889999999999999887766655444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.76  E-value=6.3e-16  Score=166.68  Aligned_cols=433  Identities=13%  Similarity=0.085  Sum_probs=255.8

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHH---HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIA---NMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY  101 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~  101 (589)
                      .+.|-  |.+.+..|+..+..|++..   .+-..+.++++.+.++++|+.++......+..|+.+.+.||+ |.|.+.+.
T Consensus        40 dGG~g--WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~  116 (509)
T KOG2504|consen   40 DGGWG--WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIA  116 (509)
T ss_pred             CCCee--eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHH
Confidence            34555  5566666666676676653   455667889999999999999999999999999999999995 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHH-HHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGL-ALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL  180 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  180 (589)
                      |.++..+|.++..++.                     +.|.+++.. ++.|+|.|+++.....+++.+|+       ++|
T Consensus       117 G~~v~~~g~~lssF~~---------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-------kkR  168 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFAT---------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-------KKR  168 (509)
T ss_pred             HHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-------HHH
Confidence            9999999999999988                     555555554 67899999999999999998886       356


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhcc
Q 045410          181 ESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKR  260 (589)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (589)
                      +.+.++...+..+|.++-|.+..++.+.+|||..+++-+.+.+-.++.....+|.....++.  ...+.        ++.
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~--------~~~  238 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDL--------RNS  238 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhh--------ccc
Confidence            67777766677788888888888999999999998886666554555444444432222222  00000        000


Q ss_pred             ccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHH
Q 045410          261 KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPV  340 (589)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (589)
                      ........    .+..+    ... .+...+.+ .............++.+..+...... .+..+...+..-+...+..
T Consensus       239 ~~~~~~~~----~~~~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ll~~~~fl~~~~~~  307 (509)
T KOG2504|consen  239 AASVESTP----KPVEL----RIS-ERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLS-MLDLSLLKDPKFLLLALSN  307 (509)
T ss_pred             cccccccc----ccccc----ccc-cCCCCCCc-ccccchhhhhhCCccccccchhhhhh-hhhHHHHcCchHHHHHHHH
Confidence            00000000    00000    000 00000000 00000000000000000000000000 0001111111111111111


Q ss_pred             HHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHH
Q 045410          341 WITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITI  420 (589)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~  420 (589)
                      .+....+...+    ........  +...  -+...+....+..+.-+++.++.+.+    .++..     .+......+
T Consensus       308 ~~~~~g~~~p~----~~l~~~~~--~~g~--~~~~aa~l~Siigi~~i~gRi~~G~l----aD~~~-----~~~~~~~~~  370 (509)
T KOG2504|consen  308 LFAYLGFNVPF----VYLPSYAK--SLGL--SSNDAAFLLSIIGVSDIIGRIILGLL----ADKPG-----IRALVLFLL  370 (509)
T ss_pred             HHHHHHHHHHH----HHHHHHHh--hcCC--ChhhhHHHHHHHHHhhhhhhhhhhhh----cCccc-----cchHHHHHH
Confidence            11111111110    11111111  1111  01223333444455555666665555    44432     233455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHH
Q 045410          421 GILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSL  500 (589)
Q Consensus       421 g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  500 (589)
                      ++++.+++.+.+.+..                 +.+.++...++.|+..+...........+..+.+.-..+.|+..+.+
T Consensus       371 ~ll~~gl~~~~~p~~~-----------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  371 TLLIAGLARLFLPFAT-----------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            7777777765555542                 45566777788888888877777788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          501 SISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       501 ~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      +++..+|+.+.+.+.|.++                +|+..|++++++.+++.+.+++..
T Consensus       434 gi~~l~gpPiag~~~d~tg----------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITG----------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccC----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999997776542                255678888888888776655554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.75  E-value=4.1e-15  Score=149.80  Aligned_cols=151  Identities=13%  Similarity=0.039  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      ...+..-|+.........-.+.+++++.++++..|++++...+..++.++.++.|++.+|+ |+|+.++.|+.++++|+.
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            3334444444444466677788999999999999999999999999999999999999995 999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      ++.=+.+                  ..++..++++.++.+.|.+......++++..+.++++..+      -+++....+
T Consensus        94 lF~pAa~------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~------rlnl~q~fn  149 (422)
T COG0738          94 LFWPAAS------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF------RLNLAQAFN  149 (422)
T ss_pred             HHhhhhh------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH------HHHHHHHhh
Confidence            9865441                  2267889999999999999999999999999998753332      367777788


Q ss_pred             HHHHHHHHHHHHHHHh
Q 045410          192 TVALVVALTAVVYIQT  207 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~  207 (589)
                      .+|+.++|.+++.+..
T Consensus       150 ~lGa~~gp~~g~~lil  165 (422)
T COG0738         150 GLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            8999999999999876

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.74  E-value=2.5e-15  Score=165.08  Aligned_cols=141  Identities=15%  Similarity=0.015  Sum_probs=123.9

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 045410           57 RTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPE  136 (589)
Q Consensus        57 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  136 (589)
                      .+.+..+.....+..+++.++..+++++.|.++|| +|||++++++.++.+++.+..+++.                   
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------  169 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------  169 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence            35678899999999999999999999999999999 6999999999999999999999988                   


Q ss_pred             chhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHH
Q 045410          137 GWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFA  216 (589)
Q Consensus       137 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  216 (589)
                        +.+.+.+.|++.|++.++...+...++.|.+++      +.|+...++ ......++.+++.+++++..  +||+.++
T Consensus       170 --~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 --NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             --cHHHHHHHHHHHHhhccchhHHhHhhheeecCc------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence              788899999999999999999999999999987      457777777 66677788888888888887  8999999


Q ss_pred             HHHHHHHHHHHH
Q 045410          217 IPTGCFFLSIVV  228 (589)
Q Consensus       217 ~~~~~~~i~~~~  228 (589)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877665555444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.74  E-value=5.6e-22  Score=213.63  Aligned_cols=397  Identities=14%  Similarity=0.141  Sum_probs=219.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHH
Q 045410           65 ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILY  144 (589)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (589)
                      .+.+++.+...++..++.+++|+++||+ |||++++++.++..++.++.++++..                  .+.+.+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~  106 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY------------------NNFWMLL  106 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc------------------ccccccc
Confidence            4578999999999999999999999995 99999999999999999999987611                  1566799


Q ss_pred             HHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHhHHHHHHH
Q 045410          145 AGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN---VSWILGFAIPTGC  221 (589)
Q Consensus       145 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~  221 (589)
                      ++|++.|++.|...+....++.|..|++      .|+...++.+....+|..++..+.-.+.+.   .+||..+.++.+.
T Consensus       107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~  180 (451)
T PF00083_consen  107 IGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIP  180 (451)
T ss_pred             cccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998873      356667777777788888877665444332   3599988877766


Q ss_pred             HHHHHHHHHHh--hccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhh
Q 045410          222 FFLSIVVFLIG--YHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLD  299 (589)
Q Consensus       222 ~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (589)
                      .++.++...+.  .|++...+.+.++                   .++....+...+..+++.......           
T Consensus       181 ~l~~~~~~~~~pESP~wL~~~~~~~~-------------------A~~~l~~~~~~~~~~~~~~~~~~~-----------  230 (451)
T PF00083_consen  181 SLLVLLLRFFLPESPRWLLSKGRDEE-------------------AEKVLRKLRGKEIEDEEIEEIKAE-----------  230 (451)
T ss_pred             cccccccccccccccceecccccccc-------------------cccccccccccccccccccccccc-----------
Confidence            54433332222  2332211111111                   011000000000000000000000           


Q ss_pred             hhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHH-hhhcchhhHHhhhhhcccccCcccccccc
Q 045410          300 KAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFL-AMDQQNTIGILQAIQTNKRFGSFNVPPGW  378 (589)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (589)
                                .+...+....|+.+.+... .+++++..+.+......... ....+.+.. ......+...    .....
T Consensus       231 ----------~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i-~~~~~~~~~~----~~~~~  294 (451)
T PF00083_consen  231 ----------KKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSI-FENAGISNSF----LATLI  294 (451)
T ss_pred             ----------cccccccceeeeecccccc-cccccccccccccccccccccccccccccc-cccccccccc----ccccc
Confidence                      0000000012222221111 12222222222221111110 001111111 1111111110    00111


Q ss_pred             cchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCCccchhHH
Q 045410          379 MGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAG-FVERKRRLSALQHGSFESPISILV  457 (589)
Q Consensus       379 ~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  457 (589)
                      ......++.++..        ...+|++||+       .+..+..+++++.+.++ .....      .  +.....+...
T Consensus       295 ~~~~~~~~~~~~~--------~~~~~~GRr~-------~~i~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~  351 (451)
T PF00083_consen  295 LGLVNFLGTLLAI--------FLIDRFGRRK-------LLIIGLLLMAICSLILGIIFFLG------V--SSSSWWSILS  351 (451)
T ss_pred             ccccccccccccc--------cccccccccc-------ccccccccccccccccccccccc------c--cccccccccc
Confidence            1111222222221        2367776663       56677777777766664 11100      0  0000012222


Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchh
Q 045410          458 LVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTL  537 (589)
Q Consensus       458 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~  537 (589)
                      ++...+..........+..+.+..|.+|.+.|+++.++....+.+++++++.+.+.+.+...                 .
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-----------------~  414 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-----------------G  414 (451)
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------c
Confidence            22222222333445567777889999999999999999999999888888887766543211                 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 045410          538 DYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKE  572 (589)
Q Consensus       538 ~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (589)
                      ...|.++++++++..++.+++.+|+|+++.+|.++
T Consensus       415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  415 WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            13466777888888888888899999998888764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.74  E-value=1.3e-15  Score=163.10  Aligned_cols=356  Identities=15%  Similarity=0.106  Sum_probs=221.2

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhh----hcccchHHHH-HHHHHHHHHHHHH
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSD----TYLGRFRTLL-YGSIASFLGMGIM  113 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~l~-~~~~~~~~~~~~~  113 (589)
                      +...+.++....++..|+++.+|+++...|.+..+..+..++..|+.|+++|    | +||||..+ +|.+..+++..++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence            4455555666778999999999999999999999999999999999999999    7 59887666 5667777777666


Q ss_pred             HHhhcCCC-CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410          114 TLTASIPK-LRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT  192 (589)
Q Consensus       114 ~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (589)
                      ....  |. ...            ......+.+..++..++.........++..|..+++     ++|.+..++-.....
T Consensus        90 f~~~--p~~~~~------------~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~-----~~R~~l~~~~~~~~~  150 (428)
T PF13347_consen   90 FSPP--PAGLSF------------TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDP-----DERTRLSSWRMIFSM  150 (428)
T ss_pred             hccc--cchhhh------------hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccH-----hhhhhHHHHHHHHHH
Confidence            6542  21 000            012333466666778999999999999999998754     346667777666777


Q ss_pred             HHHHHHHHHHHHHHhhc-------chhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccC
Q 045410          193 VALVVALTAVVYIQTNV-------SWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLG  265 (589)
Q Consensus       193 ~g~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (589)
                      +|..+...+.+.+.+..       +|++...+.+++.++..++.....|+.+++.+++++               +.   
T Consensus       151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~---------------~~---  212 (428)
T PF13347_consen  151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK---------------KI---  212 (428)
T ss_pred             HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------cc---
Confidence            77766665655555322       577776666655555544444433331000000000               00   


Q ss_pred             CCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHH
Q 045410          266 QASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGI  345 (589)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  345 (589)
                        +   +                                            +..++..    .+ .|.....+...+...
T Consensus       213 --~---~--------------------------------------------~~~~~~~----~~-nr~~~~l~~~~~~~~  238 (428)
T PF13347_consen  213 --S---L--------------------------------------------RDSLRSL----FR-NRPFRILLLAFFLQW  238 (428)
T ss_pred             --c---c--------------------------------------------ccchhhh----cc-cchHHHHHHHHHHHH
Confidence              0   0                                            0000000    00 111111111112211


Q ss_pred             HHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHH
Q 045410          346 FCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMA  425 (589)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~  425 (589)
                      +.+........++.....+.+ .      ..+....+..+..++..++..++    .+|+++|+       .+..+.++.
T Consensus       239 ~~~~~~~~~~~y~~~~vl~~~-~------~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~~-------~~~~~~~~~  300 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYVLGNE-G------LISIFMLIFFVASIVGSPLWGRL----SKRFGKKK-------VYIIGLLLA  300 (428)
T ss_pred             hhhhhhhhHHHHHHHHHhcCc-h------hhHHHHHHHHHHHHHHHHHHHHH----HHHcccee-------ehhhhHHHH
Confidence            222111111122222221111 1      12233334455556666665554    78876653       678888888


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccC-------chhhHHHHHHHHH
Q 045410          426 ILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP-------ESMRTVSGAVFFL  498 (589)
Q Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~  498 (589)
                      +++.++..+..               ..+.++..+..++.+++.+......+++..|..+       .+..|...|++++
T Consensus       301 ~~~~~~~~~~~---------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~  365 (428)
T PF13347_consen  301 ALGFLLLFFLG---------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF  365 (428)
T ss_pred             HHHHHHHHHHH---------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence            88888877764               2356677778888999988888888888887776       3557999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc
Q 045410          499 SLSISSYINSALVNIIHGLTK  519 (589)
Q Consensus       499 ~~~lg~~l~~~l~~~i~~~~~  519 (589)
                      ...++..+++.+.+.+.+..+
T Consensus       366 ~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  366 FIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHhC
Confidence            999999999999998886653

>TIGR00788 fbt folate/biopterin transporter

Probab=99.74  E-value=3.9e-15  Score=160.74  Aligned_cols=178  Identities=13%  Similarity=0.081  Sum_probs=129.6

Q ss_pred             chHH-HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc-----chHHHHH
Q 045410           28 WRSI-KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG-----RFRTLLY  101 (589)
Q Consensus        28 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~l~~  101 (589)
                      ++.. ..+....+...+. +.+...++.++.+++|+++++.+...+...+...+-++ +|.++||+ +     ||+.+++
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~  100 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVL  100 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHH
Confidence            4433 3344477888887 77888899999999999999999999988888888665 99999995 8     7777777


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      +.++.. ......++. .+                 .......+.+++.+++.+....+.-++..|..+ +++   +.++
T Consensus       101 ~~~l~~-~~~~~~l~~-~~-----------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~  157 (468)
T TIGR00788       101 SGLLGS-AILYGLLPG-KV-----------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGP  157 (468)
T ss_pred             HHHHHH-HHHHHhccc-cc-----------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCC
Confidence            766653 122222221 11                 133344456788899999999999999999988 322   2234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          182 SFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ...++.+.+.++|..+|+.++|.+.+.++|+..|++.+.+.++..+..++
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~  207 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL  207 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence            45566666778999999999999999999999998877766655433333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.74  E-value=6.5e-14  Score=152.48  Aligned_cols=176  Identities=9%  Similarity=0.032  Sum_probs=129.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      ..++|..+.....+..+.... |++ ......+.+++|+|..+.+++.++.. ...++.++.|+++|| +|||++++++.
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~-y~f-sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~   98 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFM-YAF-NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSM   98 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            345666555544444444433 443 35566788999999999999988754 445677789999999 59999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      +++.+++++++++.+ ..+              ..+.+.+.+.|++.|+|.+...+....++.++||+       .|+..
T Consensus        99 ll~~iG~ll~ala~~-~~i--------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a  156 (591)
T PTZ00207         99 TVFCLGTLLFALTFQ-EVI--------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAV  156 (591)
T ss_pred             HHHHHHHHHHHHHhc-ccc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHH
Confidence            999999999998631 000              12678899999999999999989899999999973       47788


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhhcchhHhHHHHHHHHHHHHH
Q 045410          184 FNWWYFSFTVALVV-ALTAVVYIQTNVSWILGFAIPTGCFFLSIV  227 (589)
Q Consensus       184 ~~~~~~~~~~g~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~  227 (589)
                      .++......+|+.+ +++..+++.+  +|+..|++.+++.++..+
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence            99988898999864 6655555543  567666665554444333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.73  E-value=1.1e-15  Score=151.98  Aligned_cols=119  Identities=16%  Similarity=0.036  Sum_probs=104.6

Q ss_pred             cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchh
Q 045410           60 YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQ  139 (589)
Q Consensus        60 lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  139 (589)
                      .+-+..-.|.+-+.|.+...+.++..|.++||| |||++++.|.+..++...+.+.+.                     +
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~---------------------~  120 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR---------------------N  120 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH---------------------H
Confidence            334556789999999999999999999999997 999999999999999888888877                     6


Q ss_pred             HHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          140 LSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       140 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                      ...++++|++.|+..|- ...+-++++|.+++      +.|..+++....+..+|.++||+++|++..
T Consensus       121 F~afv~aR~l~Gi~kgn-l~v~rAiisdV~se------k~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGN-LSVIRAIISDVVSE------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCc-hHHHHHHHHhhcCh------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            66688889999999876 57789999999987      346678999999999999999999999988

>PRK11462 putative transporter; Provisional

Probab=99.73  E-value=5.1e-14  Score=151.88  Aligned_cols=152  Identities=13%  Similarity=0.139  Sum_probs=113.8

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHHHH-HHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRTLL-YGSIASFLGMG  111 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~-~~~~~~~~~~~  111 (589)
                      ...+...+.+..+..++..|+++.+|+++...|.+..+.-+.-++.-|+.|+++||.   +||||..+ ++.+.+.+...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            455555666666678899999999999999999999999999999999999999973   69886665 45567777665


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      ++...   |....            ......+.+.-++..++..+......++.+|+.++.     ++|.+..++.....
T Consensus        96 llf~~---p~~s~------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~-----~eRt~l~s~r~~~~  155 (460)
T PRK11462         96 LAYST---PDLSM------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP-----TQRISLQSWRFVLA  155 (460)
T ss_pred             HHHhC---CCCCc------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH-----HHHHHHHHHHHHHH
Confidence            55543   32111            112344555556678888888888889999987653     56888999988888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 045410          192 TVALVVALTAVVYIQT  207 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~  207 (589)
                      ++|..+++.+...+..
T Consensus       156 ~iG~~~~~~~~~plv~  171 (460)
T PRK11462        156 TAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888777655544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.72  E-value=9.2e-15  Score=151.40  Aligned_cols=391  Identities=12%  Similarity=0.078  Sum_probs=217.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +..+......|...+++-...++++.++++..|+|.++.|.+.++..+...+.+|+.|.++|| +|.||-++....+..+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHH
Confidence            445555556666677767778999999999999999999999999999999999999999999 5977776655443322


Q ss_pred             --HHHHH-HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          109 --GMGIM-TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       109 --~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                        +.+.. .+.+.+..                 +   ++++.++.++..+.......++. |.+.+... +  ..+.=++
T Consensus        86 l~~pff~~v~~pll~~-----------------n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s-r--~~~feYG  141 (412)
T PF01306_consen   86 LFGPFFIYVFGPLLQS-----------------N---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS-R--RNGFEYG  141 (412)
T ss_dssp             TCHHHHHHTHHHHHHT-----------------T----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH-H--HHSS-HH
T ss_pred             HHHHHHHHHHHHHHHH-----------------H---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHH-H--HhcCCcc
Confidence              32222 22220000                 1   34444444444444443333332 43321100 0  0111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccC
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLG  265 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (589)
                      -..+.+.+|..++..++|.+.+ .+.+..|++.....++..++....++..+   ++.+                   ..
T Consensus       142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~---~~~~-------------------~~  198 (412)
T PF01306_consen  142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVP---PQAE-------------------VA  198 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SS---SSS--------------------SS
T ss_pred             hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCc---hhhh-------------------hh
Confidence            2344567888888889998886 56677888766554444333322221100   0000                   00


Q ss_pred             CCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHH
Q 045410          266 QASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGI  345 (589)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  345 (589)
                      +.        .                                     +.++++...-........|+.+..........
T Consensus       199 ~~--------~-------------------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~  233 (412)
T PF01306_consen  199 DA--------L-------------------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA  233 (412)
T ss_dssp             TT--------S-------------------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             cc--------c-------------------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH
Confidence            00        0                                     00000000000000001122223333333333


Q ss_pred             HHHHhhhcchh-hHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHH
Q 045410          346 FCFLAMDQQNT-IGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILM  424 (589)
Q Consensus       346 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l  424 (589)
                      ..|..+.|+.+ ++..+   .+...    .....++.++.+.++.=.+++ .+..++.+|.+.       ++.+.++..+
T Consensus       234 ~~Y~vfdqqf~~y~~~~---f~~~~----~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~-------k~~Lllag~i  298 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASF---FQSAG----QGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGA-------KNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHT---SSSHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-H-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hcccc----cChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcCh-------HhHHHHHHHH
Confidence            33334443333 33221   11110    112223333333333222221 223445777644       4578888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHH-HHHHHHH
Q 045410          425 AILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVF-FLSLSIS  503 (589)
Q Consensus       425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg  503 (589)
                      +++=.+.+++.+                 +.+++++.-.+.++-..+......-|+.+.+|++..++...+. +...++|
T Consensus       299 ~~iRi~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  299 MAIRIIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG  361 (412)
T ss_dssp             HHHHHHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            888888888754                 5667788889999988888999999999999999999999885 7888999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045410          504 SYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACR  561 (589)
Q Consensus       504 ~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  561 (589)
                      ..+.+.+.|.+.|..                 ++...|++.+++.+...++..+..++
T Consensus       362 ~~i~s~~~G~lyd~~-----------------G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  362 IIILSPLAGYLYDRI-----------------GFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhhhHHhhHhhc-----------------CcHHHHHHHHHHHHHHHHHheeeecC
Confidence            999999999998743                 24457888888877777776666444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.69  E-value=5e-16  Score=157.79  Aligned_cols=410  Identities=13%  Similarity=0.064  Sum_probs=218.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHH
Q 045410           62 MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLS  141 (589)
Q Consensus        62 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  141 (589)
                      +++...+.+-.+..++..+++++.||++|| +|||+++-..+++++++++++++..+.+.              ...-.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~--------------~~~~m~  145 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTS--------------PLGVMM  145 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCC--------------Ccchhh
Confidence            678888899999999999999999999999 59999999999999999997777653332              012457


Q ss_pred             HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cc
Q 045410          142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN-----------VS  210 (589)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------~g  210 (589)
                      ++...|+++|+|.|+-+|+..+..+|..-...  +....+..++...++.-.|++++.++..-.-+.           .=
T Consensus       146 ~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~--RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~v  223 (538)
T KOG0252|consen  146 TLCFFRFLLGIGIGGDYPLSATIMSESANKKT--RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGV  223 (538)
T ss_pred             HHHHHHHHhhccccCCCcchHHHhhhhhhhcc--ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHH
Confidence            78899999999999999999999999654321  111233445556666667777666555444321           12


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHH-HHHHHHHhccccccCCCCCCCccCCCCCccccccccccC
Q 045410          211 WILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMA-KVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKL  289 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (589)
                      ||..|.+..+..+   ++++++.+     -|+.+....+. +....+..+.++..+.         +..+++..+   . 
T Consensus       224 WRl~~glg~vpa~---~~ly~Rl~-----M~Et~~Y~al~~~~~~~a~~d~~k~~~~---------~~~~~~~~~---~-  282 (538)
T KOG0252|consen  224 WRIIFGLGAVPAL---LVLYFRLK-----MPETARYTALVSKKLKQAAGDMKKVLSV---------DIEAESTAE---S-  282 (538)
T ss_pred             HHHHHHHHHHHHH---HHHHhhhc-----CCcchhHHHHhhcCHhhhhhcccccccc---------ccchhhccc---c-
Confidence            8877766554433   22233221     11111111000 0000011111110000         000000000   0 


Q ss_pred             CCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHH-HHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccc
Q 045410          290 PHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVE-QLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKR  368 (589)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (589)
                                            ....+......|..+... ..++++.      ....|++.-..+++..+.|..-++.-
T Consensus       283 ----------------------~~~~~~~~~~~F~~~f~~~hg~~Llg------t~~~WFllDiafy~~nL~~s~I~~~i  334 (538)
T KOG0252|consen  283 ----------------------DVPPPSNSFGLFSRLFLRWHGKHLLG------TAGTWFLLDIAFYGQNLFQSVIFSAI  334 (538)
T ss_pred             ----------------------CCCCcccccchHHHHHHHHHHHHHHH------HHHHHHhhhhhhhccccHHHHHHHhh
Confidence                                  000001111111111000 1122222      22222222222333333333222211


Q ss_pred             cCccccccc-ccchh--hHHHHHHHH---Hh-hhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          369 FGSFNVPPG-WMGLI--SMLTLSTWI---FF-YERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRL  441 (589)
Q Consensus       369 ~~~~~~~~~-~~~~i--~~~~~~~~~---~l-~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~  441 (589)
                      .  + .+.. .+...  ...+..+.+   .+ .-|+..-..++++||       ..-+.|++++++.++.++..-.    
T Consensus       335 g--~-~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~~~~y~----  400 (538)
T KOG0252|consen  335 G--V-IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVIAGPYN----  400 (538)
T ss_pred             c--c-CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHHcCCcc----
Confidence            0  0 1111 11011  111211111   11 112222235666555       3668899999988887776431    


Q ss_pred             hhhccCCCCccchhHHHHHHHHHHHHH-HHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045410          442 SALQHGSFESPISILVLVPQFSFSGLT-EGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKK  520 (589)
Q Consensus       442 ~~~~~~~~~~~~~~~~~i~~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~  520 (589)
                             +  ..+..-.++.+.+..+. ...-..+...+..|.+|.+.||+.-|++-.++-+|+.++........+..- 
T Consensus       401 -------~--~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y-  470 (538)
T KOG0252|consen  401 -------Q--LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY-  470 (538)
T ss_pred             -------c--ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC-
Confidence                   0  11111122233333332 222233444566799999999999999999999999999888776654210 


Q ss_pred             ccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 045410          521 YAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKES  573 (589)
Q Consensus       521 ~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (589)
                          +       ...++.+.+++++++..+..++.+++ +|.|++..++.+..
T Consensus       471 ----p-------~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e  511 (538)
T KOG0252|consen  471 ----P-------PNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNE  511 (538)
T ss_pred             ----C-------ccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcCh
Confidence                1       01134568889999999887777666 49898888877544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.69  E-value=1.9e-15  Score=168.34  Aligned_cols=200  Identities=14%  Similarity=0.146  Sum_probs=151.0

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      ...+|.+++.++..++....+.+......+.++++++++.++.|++.+.+.++..++.++.|+++|| +||||.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHH
Confidence            3456655555555666666667777888888899999999999999999999999999999999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCC----------------CCCCCCC------------CCCCCC--chhHHHHHHHHHHHHHhh
Q 045410          105 ASFLGMGIMTLTASIPKLR----------------PPDCTGA------------QCPQPE--GWQLSILYAGLALLAIGS  154 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~----------------~~~~~~~------------~~~~~~--~~~~~~~~~~~~l~g~g~  154 (589)
                      ++++|.+++++.+.+-.-.                ...|...            .+...+  ...+..++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            9999999988753110000                0001000            000001  113567889999999999


Q ss_pred             ccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------chh
Q 045410          155 GGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNV----------------------SWI  212 (589)
Q Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------g~~  212 (589)
                      +...+...+++.|.+|+      +.|+..+++++.+..+|..+|+++++++.+.+                      +||
T Consensus       187 ~~~~~~~~~~i~d~~~~------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKS------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCc------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            99999999999999987      34778899999999999999999999987543                      277


Q ss_pred             HhHHHHHHHHHHHHHHHHH
Q 045410          213 LGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       213 ~~f~~~~~~~~i~~~~~~~  231 (589)
                      ..|++.+++.++..+.++.
T Consensus       261 l~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            7788777666555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.68  E-value=4.5e-14  Score=150.92  Aligned_cols=148  Identities=16%  Similarity=0.086  Sum_probs=124.8

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 045410           57 RTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPE  136 (589)
Q Consensus        57 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  136 (589)
                      .+++++...+.+.+.++|.+++.++.+++|+|.|| +.-.+.+....+++.+..++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            36788999999999999999999999999999999 4988888887777777666665555                   


Q ss_pred             chhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------hhcc
Q 045410          137 GWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ------TNVS  210 (589)
Q Consensus       137 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~g  210 (589)
                        +.+.+++.|++.|+.+++..|....+++.+|.+      ++|+..+++++.+..+|.++|.+++..+.      ...|
T Consensus       133 --s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  133 --SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             --hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence              667799999999999999999999999999987      45777899999999999999998887753      3468


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHh
Q 045410          211 WILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      |||.|++.+++.+...++.++.
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~~  226 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFFF  226 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEEE
Confidence            9999999888766555544443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=4.9e-15  Score=148.16  Aligned_cols=147  Identities=14%  Similarity=0.075  Sum_probs=133.9

Q ss_pred             hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCch
Q 045410           59 KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGW  138 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  138 (589)
                      .++-.+++.|++.+++.+.+.+..++.|.+.|| +|+|-.+++|..++...++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            467789999999999999999999999999999 6999999999999999999999988                     


Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHH
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIP  218 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  218 (589)
                      +++.++++|.++|+|.++...+..++++|.||++     ++|++.+++.-....+|-.+||..+|.+=+..|.+.+|.+.
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d-----~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL  232 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED-----NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL  232 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc-----hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence            6778999999999999999999999999999986     46788999988889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 045410          219 TGCFFLSIVVFLIG  232 (589)
Q Consensus       219 ~~~~~i~~~~~~~~  232 (589)
                      +++.++-.++-++.
T Consensus       233 ~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  233 AIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHHHHHHHHhe
Confidence            88777666554444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.68  E-value=4.3e-14  Score=139.62  Aligned_cols=166  Identities=14%  Similarity=0.058  Sum_probs=121.6

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL  115 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~  115 (589)
                      +..+++..........+.+-+...+|.+..+..++......+..+++-.+|.++|+ +|||+.+.+..+...+...+-..
T Consensus        84 g~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~  162 (528)
T KOG0253|consen   84 GMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGA  162 (528)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcC
Confidence            34455555555555556666667789999999999999999999999999999999 59999998887766665555555


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVAL  195 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (589)
                      ++                     ++..+++.|.+.|+|.|+ .|...++-.|.-|...      |...+-.. ....+|.
T Consensus       163 sp---------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~  213 (528)
T KOG0253|consen  163 SP---------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQ  213 (528)
T ss_pred             CC---------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHH
Confidence            44                     566788999999999999 8999999999887632      22223222 3456788


Q ss_pred             HHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          196 VVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       196 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ++...+.-....++||||..........+...+.++
T Consensus       214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w  249 (528)
T KOG0253|consen  214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVW  249 (528)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhh
Confidence            888777666677889999877766444333333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.9e-13  Score=143.09  Aligned_cols=369  Identities=12%  Similarity=0.108  Sum_probs=221.8

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHHH-HHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRTL-LYG  102 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l-~~~  102 (589)
                      .+|..+--....+...+.+-.+..++..|+++..|+++..+|.+..+.-+.-++.-|+.|.++||.   +||||.. +++
T Consensus        10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            444444444566666677777789999999999999999999999999999999999999999975   6877655 455


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhh
Q 045410          103 SIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLES  182 (589)
Q Consensus       103 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (589)
                      .+-.++.+.++..++...               ........++--.+.+++...+.-...++.+++.++.     ++|.+
T Consensus        90 ~ip~~i~~~l~F~~p~~~---------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~-----~ER~~  149 (467)
T COG2211          90 AIPFAIVAVLLFITPDFS---------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP-----QERAS  149 (467)
T ss_pred             hHHHHHHHHHHHcCCCcc---------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH-----HHHHH
Confidence            577777777777654111               0123344455557788999998888889999987654     56888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-------cchhHhHHHHHHHHHHHHHHHHHhhcc-ccccCCCCChHHHHHHHHH
Q 045410          183 FFNWWYFSFTVALVVALTAVVYIQTN-------VSWILGFAIPTGCFFLSIVVFLIGYHT-YIIKNPQGSVFVDMAKVIT  254 (589)
Q Consensus       183 ~~~~~~~~~~~g~~~~~~~~~~l~~~-------~g~~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  254 (589)
                      ..++-....++|..+...+.+.+...       .||+..-.+.+++.++.++.-++..++ ..++.+.++..+       
T Consensus       150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~-------  222 (467)
T COG2211         150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK-------  222 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc-------
Confidence            89998888888877777666666543       345544333333333333322222222 111111110000       


Q ss_pred             HHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHH
Q 045410          255 ASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLL  334 (589)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (589)
                                                              .++.++...                        ....|.+
T Consensus       223 ----------------------------------------~~~~~~~~~------------------------~~~Nrp~  238 (467)
T COG2211         223 ----------------------------------------LKLKDSFLL------------------------IFKNRPL  238 (467)
T ss_pred             ----------------------------------------ccHHHHHHH------------------------HHccchH
Confidence                                                    000000000                        0011111


Q ss_pred             HhHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCC
Q 045410          335 VAMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLT  413 (589)
Q Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~  413 (589)
                      +..+...++   .+...+...+...++. ..++..    +..+...........+++.++    ..++.+|+++|     
T Consensus       239 ~~~l~~~l~---~~~~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk-----  302 (467)
T COG2211         239 LLLLLMNLL---LFIAFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLIL----WPRLVKKFGKK-----  302 (467)
T ss_pred             HHHHHHHHH---HHHHHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHh----HHHHHHHhchH-----
Confidence            121211211   1221222222222111 111111    111222222223333333444    33347776555     


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhc-------cCc
Q 045410          414 MRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQ-------LPE  486 (589)
Q Consensus       414 ~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~-------~P~  486 (589)
                        +...++.++.+++.++..+.+               ..+...+++...+.++|.+...+..++++.|.       .-.
T Consensus       303 --~~~~~~~~~~~i~~~~~~f~~---------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~  365 (467)
T COG2211         303 --KLFLIGLLLLAVGYLLLYFTP---------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGV  365 (467)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhc---------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCC
Confidence              477888888888888887764               23444555666778888888888888887765       456


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045410          487 SMRTVSGAVFFLSLSISSYINSALVNIIHGLTK  519 (589)
Q Consensus       487 ~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~  519 (589)
                      +..|...+.+.+..-+|.+++..+.+++.+..+
T Consensus       366 R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         366 RREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999987653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.64  E-value=1.7e-12  Score=129.10  Aligned_cols=345  Identities=13%  Similarity=0.103  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      ..++++.+--+....+ ...+..-+.+++|+|.+.+|.+.++..+...+.+++..+++.| +|..|.+..++++..+|..
T Consensus        15 ~gIvlia~NLR~~its-vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~   92 (395)
T COG2807          15 AGIVLIAFNLRPAITS-VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGIL   92 (395)
T ss_pred             HHHHHHHhccchhhhh-hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            3333444444444333 3445667888999999999999999999999999999999999 5999999999999999988


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      +=...                      +...++.+-.+.|.|.+......++++-+.||+       +.+..+++|..+.
T Consensus        93 iR~~~----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl  143 (395)
T COG2807          93 IRSLG----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSL  143 (395)
T ss_pred             HHhcc----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHH
Confidence            87663                      235588888999999999999999999999985       3456788899999


Q ss_pred             HHHHHHHHHHHHHHHhhc-chhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCC
Q 045410          192 TVALVVALTAVVYIQTNV-SWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGN  270 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (589)
                      .+|+.+++.+...+.++. |||..+.+=+...++++++.+....+  ++.+..+.                   +..   
T Consensus       144 ~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r--~~~~~~~~-------------------~~~---  199 (395)
T COG2807         144 GAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALR--EQAASIAT-------------------KLV---  199 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccc--cccccccc-------------------ccc---
Confidence            999999999998888877 79988776555555555443332111  10000000                   000   


Q ss_pred             CccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 045410          271 SLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLA  350 (589)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  350 (589)
                                                                  ++..-|++     ...+...   +-+-+....+|..
T Consensus       200 --------------------------------------------~~~~vw~~-----~~aW~vt---LfmGlqS~~~Y~~  227 (395)
T COG2807         200 --------------------------------------------SVRKVWRS-----PLAWQVT---LFMGLQSLLYYIV  227 (395)
T ss_pred             --------------------------------------------cccccccC-----chhHHHH---HHHHhhHHHHHHH
Confidence                                                        00111211     0011111   1122444556666


Q ss_pred             hhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHH
Q 045410          351 MDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLL  430 (589)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l  430 (589)
                      +.+.+.+...+  +++...      .+.+..+..+..+....+.-.    +.+|..+      .+........++.++++
T Consensus       228 ~~WLP~ili~~--G~sa~~------aG~llsl~~l~~~~~~ll~P~----la~R~~n------~r~~~~~~~~~~l~G~~  289 (395)
T COG2807         228 IGWLPAILIDR--GLSAAE------AGSLLSLMQLAQLPTALLIPL----LARRSKN------QRPLVVLALLLMLVGLV  289 (395)
T ss_pred             HHHHHHHHHHc--CCCHHH------hhhHHHHHHHHHHHHHHHHHH----HHHHhcc------cchHHHHHHHHHHHHHH
Confidence            66555555433  333322      222222222222222222111    2444332      22355666666666666


Q ss_pred             HHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccC-chhhHHHHHHHHHHHHHHHHHHHH
Q 045410          431 VAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLP-ESMRTVSGAVFFLSLSISSYINSA  509 (589)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~l~~~  509 (589)
                      .+.+.+.              ...++|    .++.|+|.+..+|....++...+. ++..+.-.|+.+..+.+-..+||.
T Consensus       290 G~~~~P~--------------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         290 GLLLAPG--------------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             HHHHhhh--------------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            6655531              112222    478899999999998888887764 445566777888888899999999


Q ss_pred             HHHHhhhccc
Q 045410          510 LVNIIHGLTK  519 (589)
Q Consensus       510 l~~~i~~~~~  519 (589)
                      +.|.+.|.++
T Consensus       352 l~G~lhDa~g  361 (395)
T COG2807         352 LFGFLHDATG  361 (395)
T ss_pred             hHhHHHHhcC
Confidence            9999999765

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.54  E-value=3.7e-11  Score=122.65  Aligned_cols=346  Identities=11%  Similarity=0.072  Sum_probs=202.6

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc-----chHHH-HHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC
Q 045410           57 RTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG-----RFRTL-LYGSIASFLGMGIMTLTAS-IPKLRPPDCTG  129 (589)
Q Consensus        57 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~l-~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~  129 (589)
                      ..+++++..-.+.+++...+... ..+..|+.||++ +     ||-.+ ..|.+++..+..+..++.- +.+...+.   
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~---   81 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS---   81 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc---
Confidence            35788999999999888877665 599999999996 8     66544 4556666666666655421 11100000   


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNV  209 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  209 (589)
                         .+..........+..++.|+|.+...+...+++.|..|+      ++|.+..++.|.+..+|.+++.++.+.+.+.+
T Consensus        82 ---~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   82 ---SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             ---ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH------hhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence               000011122344455678999999999999999999887      45778899988899999999999999988877


Q ss_pred             chhHhHH----HHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccc
Q 045410          210 SWILGFA----IPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESK  285 (589)
Q Consensus       210 g~~~~f~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (589)
                      +..-..-    .+.+...+.++..+...++.++..+..++                                        
T Consensus       153 s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~----------------------------------------  192 (403)
T PF03209_consen  153 SPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAER----------------------------------------  192 (403)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCC----------------------------------------
Confidence            6432222    22222223333333323322211100000                                        


Q ss_pred             cccCCCCcchhhhhhh-hhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhh
Q 045410          286 TTKLPHTNRFRCLDKA-AVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQ  364 (589)
Q Consensus       286 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (589)
                             ++..+.+.. .+..+                      .+.++.+..+  ++....+++ ..   .  +  ...
T Consensus       193 -------~~~~f~~a~~~~~~~----------------------~~a~~f~~fl--~l~t~a~~~-QD---~--i--LEP  233 (403)
T PF03209_consen  193 -------PRPPFREAWRQVWAS----------------------PQARRFFVFL--FLGTLAFFM-QD---V--I--LEP  233 (403)
T ss_pred             -------CCccHHHHHHHHHhC----------------------CChhHHHHHH--HHHHHHHHh-hH---H--H--cCC
Confidence                   000000000 00000                      0011111111  111111110 00   0  0  001


Q ss_pred             cccccCcccc-cccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045410          365 TNKRFGSFNV-PPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSA  443 (589)
Q Consensus       365 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~  443 (589)
                      +..++++++. .......+-..+.+++..+.++...   +|.       ++.+...+|+.+..+++.+..+...      
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~~------  297 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAGP------  297 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHHh------
Confidence            1112212111 1233344445566666666555422   222       2234566788888888777666542      


Q ss_pred             hccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045410          444 LQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTK  519 (589)
Q Consensus       444 ~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~  519 (589)
                              ..+.+.+.+..++.|++.+.......+...++++++..|+.+|.|..++.++..++..+++.+.|...
T Consensus       298 --------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 --------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             --------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    22455667788999999999999999999999999999999999999999999999999999998764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.53  E-value=8.7e-11  Score=126.22  Aligned_cols=360  Identities=15%  Similarity=0.113  Sum_probs=192.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHH
Q 045410           65 ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA-SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSIL  143 (589)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  143 (589)
                      +-.++..++..+..++..|+.|-++|+. |+||.++....+ .++.+..+.+..  |                 ++.+..
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--~-----------------~~~~~~  129 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--P-----------------GQWWLA  129 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--c-----------------chHHHH
Confidence            3346778899999999999999999995 888777766554 444555555543  1                 144444


Q ss_pred             HHHHHHHHHhhccccccHHHHhhccCCCCCCCcch--------------------hhhhHHHHHHHHHHHHHHHHHHHHH
Q 045410          144 YAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS--------------------QLESFFNWWYFSFTVALVVALTAVV  203 (589)
Q Consensus       144 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~r~~~~~~~~~~~~~g~~~~~~~~~  203 (589)
                      .+..++..++.+.......+++.|+.++++..+..                    .|++..+.-+..+++|+++...+.-
T Consensus       130 ~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l  209 (477)
T PF11700_consen  130 LVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISL  209 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            44444555666666778889999988775431100                    1245555555567778877766654


Q ss_pred             HHHhh--------cchhHhHHHHHHHHHHHHHHHHHhhccccc--cCCC-CChHHHHHHHHHHHHhccccccCCCCCCCc
Q 045410          204 YIQTN--------VSWILGFAIPTGCFFLSIVVFLIGYHTYII--KNPQ-GSVFVDMAKVITASCRKRKVNLGQASGNSL  272 (589)
Q Consensus       204 ~l~~~--------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (589)
                      .+...        .+.|..+.+.++..++..+-.++..|+.+.  ..|. .+......+.+...+|+             
T Consensus       210 ~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~-------------  276 (477)
T PF11700_consen  210 LLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE-------------  276 (477)
T ss_pred             HHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH-------------
Confidence            44322        224666666665544443333333332211  0111 11111111111111111             


Q ss_pred             cCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 045410          273 YDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMD  352 (589)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  352 (589)
                                                                             ....|.+...+      +.++....
T Consensus       277 -------------------------------------------------------~~~~~~~~~fL------ia~~l~~d  295 (477)
T PF11700_consen  277 -------------------------------------------------------IRKLRQLFLFL------IAYFLYSD  295 (477)
T ss_pred             -------------------------------------------------------HHhChHHHHHH------HHHHHHHH
Confidence                                                                   01112222211      11111112


Q ss_pred             cchhhHH------hhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHH
Q 045410          353 QQNTIGI------LQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAI  426 (589)
Q Consensus       353 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~  426 (589)
                      ...+...      ....+++.      .....+..+..+..+++..+++++    .+|++.|++     +.+.+++++..
T Consensus       296 g~~ti~~~~~i~a~~~lg~s~------~~l~~~~l~~~i~a~~Ga~~~g~l----~~r~g~k~~-----~~l~~~l~~~~  360 (477)
T PF11700_consen  296 GVNTIISFAGIYATEVLGMST------TQLIVFGLVVQIVAIIGALLFGWL----QDRFGPKTK-----RTLLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHhcCcCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCchh-----HHHHHHHHHHH
Confidence            2222111      11112111      111222333344444444554444    777765421     23333333332


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHH
Q 045410          427 LSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYI  506 (589)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  506 (589)
                      +.. +.++.... .+.   .|    ..+.+.+.+.-++.|+..+...+..-++..++.|++.++...|++.+....++++
T Consensus       361 ~i~-~~g~~G~~-~~~---~g----~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~l  431 (477)
T PF11700_consen  361 IIP-LYGLFGFW-PSF---FG----LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWL  431 (477)
T ss_pred             HHH-HHHHHHhh-hcc---cC----cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            222 22222100 000   00    1123334445667888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 045410          507 NSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       507 ~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                      ||.+.+.+.+.++                +..+.+..+.++.++++++.+.+
T Consensus       432 GPll~g~i~~~tg----------------~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  432 GPLLFGLITDATG----------------SQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHhC----------------CchhHHHHHHHHHHHHHHHHhhc
Confidence            9999999987653                12345666777777776666444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2.6e-13  Score=129.45  Aligned_cols=367  Identities=13%  Similarity=0.122  Sum_probs=219.7

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 045410           49 IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT  128 (589)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  128 (589)
                      ..-+..+...+.+++.++..++.++|+.=-.+.+.++|++.||.+|-|..-++-++...+|.++++...           
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-----------  131 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-----------  131 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-----------
Confidence            355778888888899999999999999999999999999999999999887777888888988888754           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          129 GAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN  208 (589)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  208 (589)
                             ...+.|+...+|+++|+|.-....+.+.+...+|..      ++....++++-....+|......+.+++-+.
T Consensus       132 -------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG------KELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  132 -------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG------KELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             -------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecC------ccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                   113789999999999999888877888888888865      4577889998888889988887777887765


Q ss_pred             cchhH------hHHH----HHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCC
Q 045410          209 VSWIL------GFAI----PTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLT  278 (589)
Q Consensus       209 ~g~~~------~f~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (589)
                      .+=-.      ...+    ........++.... .                      ...+++.+      +-++..+..
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~-l----------------------g~~D~rAe------rilh~e~g~  249 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS-L----------------------GLSDDRAE------RILHLEEGF  249 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hhhhhHHH------HHHhhhcCc
Confidence            43111      1110    00000011111000 0                      00000000      000000000


Q ss_pred             ccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchh--
Q 045410          279 QSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNT--  356 (589)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--  356 (589)
                                                        -|+.+.      .+.+++.+.-  ...+.+.+..+++...-+.+  
T Consensus       250 ----------------------------------~Ge~pk------Ltdv~~f~pp--fw~~~iicv~yyva~fPFi~lg  287 (459)
T KOG4686|consen  250 ----------------------------------LGEEPK------LTDVNTFYPP--FWVLVIICVLYYVAWFPFITLG  287 (459)
T ss_pred             ----------------------------------ccCCcc------cccccccCcc--HHHHHHHHHHHHHHHHHHhhhh
Confidence                                              000000      0000111100  01122233333333332222  


Q ss_pred             -hHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045410          357 -IGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFV  435 (589)
Q Consensus       357 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~  435 (589)
                       ++...-.+.+.      ..++.+.........+..|+++.+    .+|.+++      .+++..+.+....+-....+.
T Consensus       288 ~~fF~~rfGlS~------~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft  351 (459)
T KOG4686|consen  288 PMFFQKRFGLSA------VSAGNILSTVYGISAVLSPVFGAI----SDKYGFN------LWWVASACILTLLGHSGLFFT  351 (459)
T ss_pred             HHHHHHhhCCCh------hhccchhhhhhhhhhhhhhhHHHh----Hhhhcce------ehhHHHHHHHHHHHhhhHHhh
Confidence             22111111111      223333333444455666776666    6666543      235555555555555544443


Q ss_pred             HHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          436 ERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIH  515 (589)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  515 (589)
                      .                   +.....+.++|+.........|-.+....|++.-|++.|+.+..+++|-++.+.+.+++.
T Consensus       352 ~-------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  352 F-------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             h-------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence            2                   122346788889888888888899999999999999999999999999999999999887


Q ss_pred             hccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 045410          516 GLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       516 ~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                      |..+     +        ....+.+|..+..+++....+.+..
T Consensus       413 d~~g-----~--------y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  413 DGDG-----S--------YDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             cCCC-----c--------hhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            6321     1        1123445666666665555444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=3.1e-12  Score=135.34  Aligned_cols=175  Identities=14%  Similarity=0.064  Sum_probs=131.7

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      +|..+..+.+.+.....++....+++.|+++++|+++.+.+.+.+...+...++.+++|+++|| +|||+.+..+.+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~  293 (393)
T PRK15011        215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGV  293 (393)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHH
Confidence            3433434444444445555566788999999999999999999888888888899999999999 599998887766555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +....+....                     +.+.+++.+++.+++.|...+..+.+..|.+|+       .+++..+++
T Consensus       294 ~~~~~~~~~~---------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~g~~~~~~  345 (393)
T PRK15011        294 CFYAGMLMAH---------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------QAGSATTLY  345 (393)
T ss_pred             HHHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CcchHHHHH
Confidence            5444333333                     456667778888777777777777888888874       245678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +...++|..+++.++|.+.+.+||+..|++..++.+++++..+.
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            78889999999999999999899999998877776666655544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.47  E-value=4.6e-12  Score=132.96  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=141.8

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccc-h
Q 045410           19 PDSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRT-KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGR-F   96 (589)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r   96 (589)
                      .+...++.+||++++.....|+....++.+.+..-+|+++ +.+-+.+-.|+++++..++.+++.+..|++..|. |. |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3344557899999999999999999998888888899874 4788899999999999999999999999999995 76 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCc
Q 045410           97 RTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG  176 (589)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  176 (589)
                      +.++.|.++.++|.++.......|.                ...+.++++|++.|+|.+. .+..=+|+++.-..     
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~----------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~-----  160 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPN----------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTV-----  160 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccc----------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCc-----
Confidence            8899999999999999944433443                2678899999999999765 56677888884433     


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hc------c---hhHhHHHHHHHHHHHHHHHHHhhcc
Q 045410          177 KSQLESFFNWWYFSFTVALVVALTAVVYIQT----NV------S---WILGFAIPTGCFFLSIVVFLIGYHT  235 (589)
Q Consensus       177 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~------g---~~~~f~~~~~~~~i~~~~~~~~~~~  235 (589)
                       +.|.++++....+..+|.++||.+...+..    .+      .   +..+-++.+++.++.++.+++..++
T Consensus       161 -~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  161 -EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             -cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence             235566666555556666777666544431    11      1   2234455555555555554444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.46  E-value=8.7e-12  Score=127.40  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      +.+..|..+.+| +....-|+..+|++.+....+.+-|+.|+ +|-|.+++++..+-.+|..+=..+. .|.+.+     
T Consensus        65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~-----  136 (480)
T KOG2563|consen   65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISS-LPFVPP-----  136 (480)
T ss_pred             hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhcc-Cccccc-----
Confidence            445667777788 88888999999999999999999999999 5999999999999999999987764 443222     


Q ss_pred             CCCCCCCchhHH--HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          130 AQCPQPEGWQLS--ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       130 ~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                               ..+  +...+..+.+.+.-.+.....-+.+-+|+++      +|+.+..+-.+++.+|..++.++...+..
T Consensus       137 ---------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  137 ---------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             ---------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceecC
Confidence                     333  6678888888888777777667777788874      46677777666777777777666555543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.44  E-value=9.8e-12  Score=135.50  Aligned_cols=179  Identities=16%  Similarity=0.112  Sum_probs=130.0

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +|+.+.......++..+.+|++..+++.|+++.+|++..+.+.+.....++..++.+++|+++|| +|||++++.+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            34544444445566778889999999999998899999888888888888999999999999999 59999998887655


Q ss_pred             HHHHHHH-HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          107 FLGMGIM-TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       107 ~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      .++...+ .... .                  .+...+++++++.+++.+...+....++.|.+|+      +.|+++++
T Consensus       327 ~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~------~~Rg~~~g  381 (490)
T PRK10642        327 FVLAIPAFILIN-S------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT------HIRYSALA  381 (490)
T ss_pred             HHHHHHHHHHHh-C------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------ccchHHHH
Confidence            5443332 2221 0                  1345677788888887777777788888999987      45778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +.+....+++.++|.+.+++.+..+ |+.++++..+..++.++..++
T Consensus       382 ~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        382 AAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            7555556677889999999887654 666665544444444444443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.40  E-value=1.8e-11  Score=128.20  Aligned_cols=163  Identities=13%  Similarity=0.055  Sum_probs=127.9

Q ss_pred             HHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 045410           38 ETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTA  117 (589)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~  117 (589)
                      .++.....+.....++.|+.+++|.++.+.+++.+.......++.+++|+++|| +|||+++.++.++..+......+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH
Confidence            334334444455678889988999999999999888877788889999999999 5999999888776555554444433


Q ss_pred             cCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 045410          118 SIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVV  197 (589)
Q Consensus       118 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  197 (589)
                                           +.+.+++.+++.|++.+...+....+..|..|+       ++++.+++++...++|..+
T Consensus       287 ---------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~  338 (375)
T TIGR00899       287 ---------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-------RAGAATTLYTNTGRVGWII  338 (375)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHHH
Confidence                                 556677778888988888888888888898764       2347788888889999999


Q ss_pred             HHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          198 ALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       198 ~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      +|.+.+.+.+..||+..|++.++..+++.++.
T Consensus       339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999988777666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.40  E-value=7.6e-12  Score=130.57  Aligned_cols=167  Identities=19%  Similarity=0.124  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +......++..+.........+.|. +++|.++.+.+.+.+.+.++..++.++.|+++|| +|||+.+.++.++..++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHH
Confidence            3333344444444444555566665 5789999999999999999999999999999999 5999999999888888877


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .+.+..+                   .+...++...++.+++.+...+..++++.|.+|+      +.|++.+++++...
T Consensus       286 ~~~~~~~-------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~  340 (377)
T TIGR00890       286 AMLFIPM-------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP------ANSAANYGFLYTAK  340 (377)
T ss_pred             HHHHccc-------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh------hhhhhHhHHHHHHH
Confidence            7766441                   0223345566778888888888888999999986      34778899999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~  225 (589)
                      ++|..++|.+.+.+.+..||++.|.+.+++.+++
T Consensus       341 ~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       341 AVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999998877665544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.40  E-value=1.8e-11  Score=129.69  Aligned_cols=165  Identities=12%  Similarity=0.105  Sum_probs=130.6

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTAS  118 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s  118 (589)
                      .+..++++.+..+++.|+.+ .|.  .+.+...+.+.++..++.++.|++.|| +||||.+..+.++..++.....+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            34455666677888888764 465  345666778888888999999999999 5999999988888888877776654 


Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 045410          119 IPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVA  198 (589)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  198 (589)
                                          +.+.+++.+++.|++.+...+.......|.+|+      +.|++.+++++...++|..++
T Consensus       301 --------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        301 --------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             --------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHH
Confidence                                455677788899999998888888888887775      458889999999999999999


Q ss_pred             HHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          199 LTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       199 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      +.+.|++.+..||+..|++.+++.+++++......+
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999877776666655554444

>PRK03699 putative transporter; Provisional

Probab=99.40  E-value=1.9e-11  Score=129.38  Aligned_cols=168  Identities=15%  Similarity=0.096  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .++......++.....+++..++|.|+++.+|++..+.+.+.+.+.++..++.+++|+++|| +|||+.+.....+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHH
Confidence            44445556666667778888999999999999999999999999999999999999999999 59999998877766665


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ..+.....                     +.+...+..++.|++.+...+...++..|..|.+       +++..++.+.
T Consensus       285 ~~~~~~~~---------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~  336 (394)
T PRK03699        285 MYLFVNTD---------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILT  336 (394)
T ss_pred             HHHHHHcC---------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHH
Confidence            55544433                     3334555567788888878888888888876532       2234667677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410          190 SFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~  226 (589)
                      +.++|..++|.+.|++.+..|++..+++..++.++..
T Consensus       337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (394)
T PRK03699        337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF  373 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence            7889999999999999999999998887665554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.39  E-value=1.5e-11  Score=133.33  Aligned_cols=177  Identities=12%  Similarity=-0.024  Sum_probs=130.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +.++.+....++....++++..++|.|+++.+|++..+.++..+...++..++.+++|+++|| +|||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH
Confidence            346666677777777888888999999999999999999999999999999999999999999 4999887766554444


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +.....+..  .                 .+.....+.+++.|+..............|.+|+      +.|+++.++.+
T Consensus       337 ~~~~~~~~~--~-----------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~------~~~g~a~gi~~  391 (467)
T PRK09556        337 IFTLGVYQH--A-----------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK------KAIGVANGIKG  391 (467)
T ss_pred             HHHHHHHHh--c-----------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch------hhHHHHHHHHH
Confidence            332222221  0                 1344455666666754433333334566788886      45888999998


Q ss_pred             HHHHH-HHHHHHHHHHHHHh------------hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          189 FSFTV-ALVVALTAVVYIQT------------NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       189 ~~~~~-g~~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ...++ |..++|.+.|++.+            ..+|+..|.+..+..+++.+..+.
T Consensus       392 ~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        392 TFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            88886 77899999999999            568999998876666665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.37  E-value=7.1e-12  Score=131.63  Aligned_cols=167  Identities=13%  Similarity=0.016  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +..+......++....++.+.++++.|+++.+|.+..+.+.+.....+...++.++.|+++|| +|||+.++.+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHH
Confidence            345666667777788888888999999998999999999999999999999999999999999 5999988866555444


Q ss_pred             HH-HHH-HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          109 GM-GIM-TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       109 ~~-~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .. ... .+..  +                 .+.+.++...++.+++.+...+...+++.|.+|++      .|++++++
T Consensus       298 ~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~  352 (394)
T TIGR00883       298 LAVPLLMALLD--S-----------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE------VRYTGASL  352 (394)
T ss_pred             HHHHHHHHHhc--C-----------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc------ceeeEeee
Confidence            33 222 2211  0                 14455667778888888888999999999999874      34455666


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHH
Q 045410          187 -WYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGC  221 (589)
Q Consensus       187 -~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~  221 (589)
                       +..+..+|..++|.+++++.+..| |++.++...+.
T Consensus       353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence             445567889999999999999888 87766654443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.37  E-value=2.6e-11  Score=136.18  Aligned_cols=134  Identities=15%  Similarity=0.046  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 045410           69 NVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLA  148 (589)
Q Consensus        69 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (589)
                      ....+..++..++.+++|+++|| +|||++++++.++.+++.+++++..                     +...+++.++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~---------------------s~~~ll~~~~  656 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN---------------------SESAMIALLC  656 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc---------------------cHHHHHHHHH
Confidence            33556667888999999999999 5999999999999999888887765                     3445666677


Q ss_pred             HHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          149 LLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       149 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      +.++..+...+...++++|++|+      +.|++++++.+....+|++++|.+++.+.+. +...+|++.+++.+++.++
T Consensus       657 l~g~~~~~~~~~~~a~~aEl~Pt------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       657 LFGGLSIAAWNALDVLTVELYPS------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            88887777888999999999997      5689999999999999999999999888764 4566777766665555444


Q ss_pred             HHH
Q 045410          229 FLI  231 (589)
Q Consensus       229 ~~~  231 (589)
                      .++
T Consensus       730 ~~~  732 (742)
T TIGR01299       730 ALK  732 (742)
T ss_pred             HHh
Confidence            433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.35  E-value=6.7e-11  Score=127.03  Aligned_cols=181  Identities=18%  Similarity=0.098  Sum_probs=130.2

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +++.........++..+.+|...++++.|+.+.+|++......+.........++.++.|+++|| +||||+++.+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHH
Confidence            44444444456777788889999999999999999998877666667777788889999999999 59999999887766


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++...+.......                 ...+.+++..++.+++.+...+..++++.|.+|+      +.|+++.++
T Consensus       327 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~------~~r~tg~g~  383 (438)
T PRK09952        327 TLSAFPFFMALEAQ-----------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA------SYRYSGAGV  383 (438)
T ss_pred             HHHHHHHHHHHHcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc------chhHHHHhH
Confidence            55544333321000                 1234444555666788888888889999999987      346677777


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHhhc--chhHhHHHHHHHHHHHHHHHHH
Q 045410          187 WY-FSFTVALVVALTAVVYIQTNV--SWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       187 ~~-~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+ .+..+|+.++|.+.+++.+..  +|..++.+..+..+++.+..+.
T Consensus       384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            44 445589999999999998754  3777777666666655555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.35  E-value=2.6e-11  Score=129.38  Aligned_cols=176  Identities=9%  Similarity=0.048  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMD--------GILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .+...++..........+++.|+. +.|.+        .+..+.+.++..+...++.++.|+++|| +|||++++++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~  290 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVA  290 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            334444444444445566777775 45544        3677999999999999999999999999 5999999999998


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++..++......+                 .+.+.+++.+++.|++.+...+....++.|.+|+      +.|++.++
T Consensus       291 ~~v~~~l~~~~~~~~-----------------~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~------~~~g~~~g  347 (418)
T TIGR00889       291 WALRFGFFAYGDPEY-----------------FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV------HIRASAQG  347 (418)
T ss_pred             HHHHHHHHHHcCcch-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHH
Confidence            888776666532100                 1345677788999999998889999999999986      56888999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHhh------cchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          186 WWY-FSFTVALVVALTAVVYIQTN------VSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       186 ~~~-~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      +.+ ....+|..+||.++|++.+.      +||+..|.+.+++.++..+..++..+
T Consensus       348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            986 56789999999999999987      46999988877665555544444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=1.4e-10  Score=122.86  Aligned_cols=175  Identities=11%  Similarity=0.068  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +..+.+....++..++++++..+++.|+.+ +|++..+.+.+.+.+.++..++.++.|+++|| +|||+.++.+..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Confidence            344555556666777888899999999976 89999999999999999999999999999999 5999999998877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +...+....   .                 +...+.  .++.|++.+...|.......+.++++     +.+++.+++.+
T Consensus       283 ~~~~~~~~~---~-----------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~-----~~~g~~~g~~~  335 (393)
T PRK09705        283 GFCGFIWLP---L-----------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQP-----AIAGKLVAFMQ  335 (393)
T ss_pred             HHHHHHHcc---c-----------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCH-----HHHHHHHHHHH
Confidence            766554322   0                 111122  24567888888888777777777532     35778899988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHh
Q 045410          189 FSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ...+++..++|.+.|++.+..| |...|.+..+..++..++....
T Consensus       336 ~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        336 GIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999876 7777777666555554444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.34  E-value=5.5e-11  Score=122.63  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchH-HHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFR-TLLYGSIASFL  108 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~l~~~~~~~~~  108 (589)
                      ..+......++..........+++.++.+.+|.++.+.+++.+...++..++.++.|+++|| +|||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence            34444455666677777777888888888889999999999999999999999999999999 59999 99999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +.+......                     +.+.+++..++.|++.+...+...+++.|.+|+      +.|++.+++++
T Consensus       255 ~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  307 (352)
T cd06174         255 GLLLLALAP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP------EARGTASGLFN  307 (352)
T ss_pred             HHHHHHHhc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH------HHHHHHHHHHH
Confidence            888888765                     567788889999999999999999999999886      46888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          189 FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      ...++|..+++.+.+.+.+..+|+..|.+.+++.++..+..
T Consensus       308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999988999999998877766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.32  E-value=4.4e-11  Score=126.89  Aligned_cols=166  Identities=17%  Similarity=0.107  Sum_probs=126.6

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDG---ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL  115 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~---~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~  115 (589)
                      +........+.+.++.|+.+..+...   ...+.+.++..++..++.++.|+++|| +|||+.+..+.++..++.+...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHH
Confidence            33444444556777888776544322   134556667777888899999999999 59999999998877777766665


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVAL  195 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (589)
                      ..                     +.+.+++.+++.|++.+...+...+++.+..|++      .+++.+++++...++|.
T Consensus       308 ~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~  360 (408)
T PRK09874        308 VQ---------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGN  360 (408)
T ss_pred             hc---------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHH
Confidence            44                     4566778889999999999999999888877652      35667888888899999


Q ss_pred             HHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          196 VVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       196 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      .+||.++|++.+.+||++.|++.+++.+++.+..+..
T Consensus       361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887777666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=1.2e-10  Score=122.70  Aligned_cols=168  Identities=10%  Similarity=-0.031  Sum_probs=139.9

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|..+......++...+.+...++.++|++ ++|.++.+.|.+.++..++..+..++.|++.|| +|+|+.+.++.+...
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACV  281 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHH
Confidence            355566666777777788888889999996 489999999999999999999999999999999 599999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +....+++++                     +.+.+++..++.|+..+...+....++.+. |+      +.++++.+++
T Consensus       282 ~~~~~~~~~~---------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~------~~~~~~q~~~  333 (382)
T TIGR00902       282 GRWAIIGAIE---------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG------SEIAKLQALY  333 (382)
T ss_pred             HHHHHHHhHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH------hhHHHHHHHH
Confidence            9988888766                     778888899999999999999999999986 65      3356677776


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410          188 Y-FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       188 ~-~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~  226 (589)
                      + ....+|..+++.++|++.+++|+ ..|++.+.+.++++
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            5 46679999999999999999886 56666666555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.32  E-value=1.4e-09  Score=111.01  Aligned_cols=345  Identities=15%  Similarity=0.104  Sum_probs=190.3

Q ss_pred             hHHHHHHHHHHhcCC---c----hhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHH-HHHHHHHHHHHHHhhcC
Q 045410           48 LIANMTVYLRTKYNM---D----GILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYG-SIASFLGMGIMTLTASI  119 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~---s----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~-~~~~~~~~~~~~~~~s~  119 (589)
                      +..++|+|+++..+-   +    .+-.+...++..+..++..|+-|.++|.. |+||....- .++.++....+.+..+ 
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~-  111 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP-  111 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence            446688888876543   2    34456778888889999999999999995 877666544 4445555556666541 


Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 045410          120 PKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVAL  199 (589)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  199 (589)
                                       ...++..++..++..++..+......+++.|..++++.++.++++      +....+|+.+.-
T Consensus       112 -----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg------~~~gylgs~i~l  168 (438)
T COG2270         112 -----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLG------WALGYLGSVILL  168 (438)
T ss_pred             -----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccc------cccccccchHHH
Confidence                             125566667777888998888999999999998876544432222      223445555444


Q ss_pred             HHH--HHHH----------------hhcchhHhHHHHHHHHHHHHHHHHHhhcccccc-CCCCChHHHHHHHHHHHHhcc
Q 045410          200 TAV--VYIQ----------------TNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK-NPQGSVFVDMAKVITASCRKR  260 (589)
Q Consensus       200 ~~~--~~l~----------------~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  260 (589)
                      +++  +.+.                +...-|..+.++++..++..+-+++..++..+. .|..+......+.....+|+-
T Consensus       169 i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i  248 (438)
T COG2270         169 IFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEI  248 (438)
T ss_pred             HHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence            332  1111                112245566666665555444444443332211 122222222222222122111


Q ss_pred             ccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHH
Q 045410          261 KVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPV  340 (589)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (589)
                      +..                                                                 ++....+     
T Consensus       249 ~~~-----------------------------------------------------------------~~i~~FL-----  258 (438)
T COG2270         249 RGR-----------------------------------------------------------------KNLVLFL-----  258 (438)
T ss_pred             hcc-----------------------------------------------------------------cchHHHH-----
Confidence            100                                                                 0111111     


Q ss_pred             HHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHH
Q 045410          341 WITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITI  420 (589)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~  420 (589)
                          +-........++....-...-....+..+.....+.....+...++..+.+    ++.+|++.|+       .+..
T Consensus       259 ----iA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g----~Ld~rfg~k~-------vl~~  323 (438)
T COG2270         259 ----IARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAG----FLDERFGSKP-------VLMI  323 (438)
T ss_pred             ----HHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCce-------eehH
Confidence                111111222222221111100001110001111222222333333333433    3477776553       6677


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHH
Q 045410          421 GILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSL  500 (589)
Q Consensus       421 g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  500 (589)
                      ++++..+.++...+..               . .. ..+..-++.++..+-.....-++..+.+|++..+...|++++..
T Consensus       324 ~lvi~~~~~~~~~~~~---------------~-~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltg  386 (438)
T COG2270         324 GLVILSIAALYLIFLE---------------G-EL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTG  386 (438)
T ss_pred             HHHHHHHHHHHHHHcc---------------c-cH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhh
Confidence            7777776666555442               1 11 22333466777777777777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccc
Q 045410          501 SISSYINSALVNIIHGLTK  519 (589)
Q Consensus       501 ~lg~~l~~~l~~~i~~~~~  519 (589)
                      ..++++||++.+.+.+.++
T Consensus       387 ra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         387 RAASFLGPFLVAVITQITG  405 (438)
T ss_pred             hHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987663

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.6e-11  Score=123.26  Aligned_cols=180  Identities=13%  Similarity=0.036  Sum_probs=139.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-cchHHHHHHHH-H
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-GRFRTLLYGSI-A  105 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~~-~  105 (589)
                      .|.+|++....++.+..-|++..|.|.|+.|..|+|..++++..+.|-.+...++++.||++||++ |||...-+.+. +
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            566788889999999999999999999999999999999999999999999999999999999998 77765544433 3


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++...+.+++                   ..+..+..+..+..|+...+..-.+.....|..|++.      -+++.+
T Consensus       331 i~~~~~~~w~~~-------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~G  385 (448)
T COG2271         331 ITASLVLYWLAP-------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATG  385 (448)
T ss_pred             HHHHHHHHHcCC-------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhc
Confidence            333444444433                   1256777777788888777766666667778887643      445666


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          186 WWYFSFTV-ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       186 ~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ....+..+ |+..+....+++.|.+||...|.+..+..+++.+.+...
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            66667777 888888888999898999999988666666555554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=2.1e-10  Score=121.15  Aligned_cols=172  Identities=6%  Similarity=-0.060  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +......++.....++...++++|+.+.+|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+ .+..+..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~  285 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence            3344445555566666677888899888999999999999999999999999999999994 987654 44444444433


Q ss_pred             HH-HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          112 IM-TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       112 ~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      .. ....                     +.+.+++..++.|++.+...+...+.+.+..|+       .|++++++++..
T Consensus       286 ~l~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~  337 (390)
T PRK03545        286 LLLPAAN---------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGI  337 (390)
T ss_pred             HHHHHhc---------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHH
Confidence            33 2222                     456677778888998888777778888886653       356678888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhh
Q 045410          191 FTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGY  233 (589)
Q Consensus       191 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (589)
                      .++|..+||.++|++.+++|++..|++.+.+.+++.+......
T Consensus       338 ~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        338 FNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999988877777666655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.30  E-value=7.2e-11  Score=125.36  Aligned_cols=167  Identities=8%  Similarity=-0.080  Sum_probs=127.1

Q ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 045410           35 LGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMT  114 (589)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~  114 (589)
                      ....++....++.+..+++.|+. +.|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.+...++.+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666777788888886 479999999999999999999999999999999 5999999887766666655555


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      +..                     +.+.+.+..++.|++.+...+...++..|.+|+      +.|++.+++.+....+|
T Consensus       304 ~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g  356 (406)
T PRK11551        304 AAP---------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT------QVRGTGVGAAVAVGRLG  356 (406)
T ss_pred             hcC---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch------hhhhhhhhHHHHhhhHH
Confidence            433                     344455666777888777888889999999987      34778899999999999


Q ss_pred             HHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHH
Q 045410          195 LVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~  230 (589)
                      ..++|.+.|++.+..+ |...+++.....+++.+..+
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988654 55555554444444444333

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=1.2e-10  Score=123.17  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=128.6

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTAS  118 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s  118 (589)
                      ++....+..+..+++.|+.+ .|++.  .+.....+.++..+++++.|++.|| +||||.+..+.++..++.++..+.. 
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-  300 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-  300 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-
Confidence            34445556666777888764 56553  5566677777888999999999999 5999999999888888877766644 


Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 045410          119 IPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVA  198 (589)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  198 (589)
                                          +.+..+++.++.|++.+...+...+.+.|.+|+      +.|++.+++++...++|..++
T Consensus       301 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        301 --------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS------QVRGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHH
Confidence                                455677788899999988888888888888875      458889999999999999999


Q ss_pred             HHHHHHHHhhcchhHhHHHHHHHHHHHHHHHH
Q 045410          199 LTAVVYIQTNVSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       199 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      |.+.+++.++.||+..|.+.+.+.+++.++.+
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987776666655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.29  E-value=1.3e-10  Score=121.78  Aligned_cols=176  Identities=13%  Similarity=0.046  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHH-HHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLL-YGSIASF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~  107 (589)
                      |..+......++.....+.+..+++.|+.+.+|.+..+.+++.+...+...++.+++|+++|| +|||+..+ .......
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence            455666677778888888888999999999999999999999999999999999999999999 49996211 1111111


Q ss_pred             HH---HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          108 LG---MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       108 ~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++   .....+.....                 .+.+..+....+.+.+.+ ..+...+++.|.+|+      +.|++.+
T Consensus       294 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~g~~~  349 (399)
T TIGR00893       294 IAGLVLSLLMFATNYV-----------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPG------NIAGLTG  349 (399)
T ss_pred             HHHHHHHHHHHHhccc-----------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh------hHHHHHH
Confidence            11   11111111000                 122333333333444444 788999999999986      4578899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~  229 (589)
                      ++++...++|..++|.+.+++.+..| |+..|.+.++..+++.+..
T Consensus       350 ~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       350 GLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888 9988887776665555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.29  E-value=5.6e-11  Score=126.94  Aligned_cols=161  Identities=9%  Similarity=0.008  Sum_probs=125.4

Q ss_pred             HhHhhhHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcC
Q 045410           43 LASMSLIANMTVYLRTKY---NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASI  119 (589)
Q Consensus        43 ~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~  119 (589)
                      ..+......++.|+.+.+   +.+..+.+.+.++..+...++.+++|+++|| +|||+.+..+.++..++.+++.++.  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333334445677766543   6677888999999999999999999999999 5999999999998888888877765  


Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH-HHHHHHHHHHHH
Q 045410          120 PKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW-WYFSFTVALVVA  198 (589)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~  198 (589)
                                         +++.+++.+++.+++.+...+....++.|.+|++      .+++..+. ++...++|.+++
T Consensus       314 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig  368 (420)
T PRK09528        314 -------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFL  368 (420)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHH
Confidence                               5677888889999988887778888889988763      24444444 566788999999


Q ss_pred             HHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          199 LTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       199 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus       369 ~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        369 STLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876665555444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.27  E-value=2.9e-11  Score=107.09  Aligned_cols=132  Identities=14%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 045410           72 SIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLA  151 (589)
Q Consensus        72 ~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  151 (589)
                      +.+.++..++.++.|+++|| +|||+.+..+.++..++.+.+....                     +.+.+.+.+++.|
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g   62 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS---------------------NITVLIIARFLQG   62 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc---------------------cHHHHHHHHHHHH
Confidence            34567788899999999999 5999999999988888888777755                     5677888899999


Q ss_pred             HhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          152 IGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       152 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ++.+...+...+++.|.+|+      +.|++..++.+...++|..+++.+.+.+.+..+|++.|++.....++..+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPP------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCCh------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999986      347778999999999999999999999998889999888876665555444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.26  E-value=4.5e-10  Score=118.31  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=118.4

Q ss_pred             HHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045410           42 KLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPK  121 (589)
Q Consensus        42 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~  121 (589)
                      .+.+....++++.|+++ .|.++.+.+.+.+...++..+++++.|+++||+ |||+++..+..+..++..... ..    
T Consensus       213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~----  285 (381)
T PRK03633        213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ----  285 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh----
Confidence            33444455678888864 699999999999999999999999999999995 999999988877777654432 11    


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 045410          122 LRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTA  201 (589)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  201 (589)
                                         ...+..+++.|++.+...|...+.+.|..|++      .+....+.++...++|..+||.+
T Consensus       286 -------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        286 -------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             -------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                               11334566777777777899999888988752      24455666677889999999999


Q ss_pred             HHHHHhhcchhHhHHHHHHHHHHHHH
Q 045410          202 VVYIQTNVSWILGFAIPTGCFFLSIV  227 (589)
Q Consensus       202 ~~~l~~~~g~~~~f~~~~~~~~i~~~  227 (589)
                      +|++.++++|++.|.+.+.+.++..+
T Consensus       341 ~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        341 TAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            99999999999999887666655543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.25  E-value=2.5e-10  Score=123.17  Aligned_cols=176  Identities=11%  Similarity=0.020  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc--chHHH-HHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG--RFRTL-LYGSIA  105 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~l-~~~~~~  105 (589)
                      +.++...+..++.....|++..++|.|+++..|++..+.+.+...+.++..++.+++|+++|| ++  ||+.. +....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence            445666667777777778889999999999899999999999999999999999999999999 54  44432 222233


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..++.+.+.+..  .                 .+.+..+++.++.|.+..........+..|.+|+      +.|++.++
T Consensus       332 ~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g  386 (452)
T PRK11273        332 VTIATIVYWLNP--A-----------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAG  386 (452)
T ss_pred             HHHHHHHHHHhc--c-----------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh------hhhhhHHH
Confidence            333333332221  0                 0223334444444544332222334456788886      45778899


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVV-ALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       186 ~~~~~~~~g~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      +.+...++|+.+ +|.+.|++.+.+||+..|++.....+++++...
T Consensus       387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            888888887654 799999999999999999887766665554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=2.9e-10  Score=124.05  Aligned_cols=148  Identities=19%  Similarity=0.114  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 045410           47 SLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPD  126 (589)
Q Consensus        47 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~  126 (589)
                      .+..+++.|+++++|++..+.+++.+...++..++.+++|+++|| +|||+++..+.++..++.+......         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            456789999988999999999999999999999999999999999 5999999888766655544433322         


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          127 CTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ  206 (589)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  206 (589)
                                ..+.+...+..++.+.......+..++++.|.+|+      +.|++.+++++...++|..+||.+.|.+.
T Consensus       363 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~g~~lgp~l~g~l~  426 (496)
T PRK03893        363 ----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT------EQRAAGLGFTYNVGALGGALAPILGALIA  426 (496)
T ss_pred             ----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH------HHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence                      01333344444444433334456778888998886      45778899988889999999999999999


Q ss_pred             hhcchhHhHHHHHH
Q 045410          207 TNVSWILGFAIPTG  220 (589)
Q Consensus       207 ~~~g~~~~f~~~~~  220 (589)
                      +.+||+..+.+...
T Consensus       427 ~~~g~~~~~~~~~~  440 (496)
T PRK03893        427 QRLDLGTALASLSF  440 (496)
T ss_pred             ccCChHHHHHHHHH
Confidence            99999887755443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.24  E-value=4e-10  Score=120.22  Aligned_cols=159  Identities=12%  Similarity=0.072  Sum_probs=128.7

Q ss_pred             HhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045410           45 SMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRP  124 (589)
Q Consensus        45 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~  124 (589)
                      .+++..+++.|+.+.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.+++.+.+       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            356677888999888999999999999999999999999999999994 888888888887777776665544       


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          125 PDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY  204 (589)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  204 (589)
                                    +.+...++.++.|++.+...+...+++.|.+|+      +.|++.+++++...++|..+|+.+.|+
T Consensus       311 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        311 --------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD------EMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence                          455667777888888887777778888998886      468889999999999999999999999


Q ss_pred             HHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          205 IQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       205 l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +.+.+|++..+...++..++..++...
T Consensus       371 l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        371 LGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            999989887777655544443333333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=6.4e-10  Score=114.44  Aligned_cols=180  Identities=12%  Similarity=0.037  Sum_probs=145.4

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      -+.++++..+.++++...+.|...+++.+++++..|++.+..+++...|.++..++.+++|+++||  +.|+++.....+
T Consensus       208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l  285 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLL  285 (394)
T ss_pred             hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHH
Confidence            345567778889999999999999999999999999999999999999999999999999999999  799999988888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ..+..+.+.+..                    .+.+...+..++.|++..........-+++..|+       .+....+
T Consensus       286 ~a~~~l~l~~~~--------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-------~~~~a~s  338 (394)
T COG2814         286 LALALLALTFTG--------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPD-------AADLAGS  338 (394)
T ss_pred             HHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-------chHHHHH
Confidence            888777777654                    1455566666666777665544445545553332       2446778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      ++....|+|..+|..++|.+.+++|+....++++.+.+++++..+...+
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888899999999999999999999999999999888888777665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.24  E-value=4.4e-10  Score=120.57  Aligned_cols=178  Identities=11%  Similarity=-0.006  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-cchHHH-HHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-GRFRTL-LYGSIASF  107 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l-~~~~~~~~  107 (589)
                      .++.+....++....++++.++++.|+.+++|++..+.+...+.+.++..++.+++|+++||+. ++|+.. ....+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            3455555566666777788889999998889999999999999999999999999999999941 223332 22222222


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +....+....   .                .+.....+..++.|++.............|.+|+      +.|++..++.
T Consensus       324 ~~~~~~~~~~---~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~  378 (434)
T PRK11663        324 LSVGSLWLMP---F----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK------EAAGAATGFV  378 (434)
T ss_pred             HHHHHHHHcc---c----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH------hhHHhHHHHH
Confidence            2221111111   0                0222233333334443222222334556787765      4588899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      +...++|..++|.+.+++.+.+||+..|++.+++.+++.+..+..
T Consensus       379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF  423 (434)
T ss_pred             HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988777766655544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.23  E-value=2.6e-10  Score=120.55  Aligned_cols=154  Identities=17%  Similarity=0.125  Sum_probs=120.2

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH-HH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI-MT  114 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~-~~  114 (589)
                      ...++.....++...+++.|+.+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.++..+.... ..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~  323 (405)
T TIGR00891       245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFA  323 (405)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHH
Confidence            33344444555667788999999999999999999999999999999999999999 59999998887765333222 22


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 045410          115 LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVA  194 (589)
Q Consensus       115 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  194 (589)
                      ...                     +.+.+.++.++.++..+...+..++++.|.+|+      +.|++.+++.+...++|
T Consensus       324 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~g  376 (405)
T TIGR00891       324 IGA---------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT------DQRAAGLGFTYQLGNLG  376 (405)
T ss_pred             hCC---------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCc------chhHHHhhHHHHHHHHH
Confidence            211                     344555666677777777778888999999986      35778899988999999


Q ss_pred             HHHHHHHHHHHHhhcc-hhHhHHH
Q 045410          195 LVVALTAVVYIQTNVS-WILGFAI  217 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g-~~~~f~~  217 (589)
                      ..++|.+.|++.+..| |+..+..
T Consensus       377 ~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       377 GALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999888 7765544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.23  E-value=2.3e-10  Score=123.43  Aligned_cols=171  Identities=11%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc-ccchHHHHHHHH--HH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY-LGRFRTLLYGSI--AS  106 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~l~~~~~--~~  106 (589)
                      ..+..+...++..++++...++++.|+. ++|++..+.+.+.++..++..++.+++|+++||+ +++|+...++..  +.
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            4455555667777787888889999986 5799999999999999999999999999999983 234444444332  22


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+++.+..                     +.+.+++.+++.|++.+...++..+++.|.+|+      +.+++.+++
T Consensus       321 ~l~~ll~~~~~---------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~------~~~g~~~g~  373 (455)
T TIGR00892       321 GLTHLLCALAG---------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA------QRFSSAVGL  373 (455)
T ss_pred             HHHHHHHHHhc---------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH------HHHhhHHhH
Confidence            33333333333                     566778889999999999999999999999886      457788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-chhHhHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNV-SWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~  228 (589)
                      ++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus       374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999999999999999999877 4999998877766555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=7.4e-09  Score=105.75  Aligned_cols=80  Identities=10%  Similarity=-0.057  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN----------  208 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------  208 (589)
                      ++..++++.++.|.|.+...+..+++++++.+++      ++++.+++......+|.+++|.+++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            6788999999999999999999999999998763      355668888889999999999999987732          


Q ss_pred             ------cchhHhHHHHHHHHHH
Q 045410          209 ------VSWILGFAIPTGCFFL  224 (589)
Q Consensus       209 ------~g~~~~f~~~~~~~~i  224 (589)
                            .+|+++|++.+.+..+
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence                  4688898855544333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00897 2A0118 polyol permease family

Probab=99.22  E-value=9e-10  Score=116.94  Aligned_cols=177  Identities=10%  Similarity=0.023  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHH-HHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLL-YGSIASF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~  107 (589)
                      |.++......++...++++..+++|.|++ ++|++..+.+.+.+...++..++.++.|+++|| +|||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH
Confidence            34455556677777888899999998885 589999999999999999999999999999999 59998764 3333334


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++...+.+.....                ..+.+..++..++.|++.+...+. .+.+.|..|       +.|++.+++.
T Consensus       300 ~~~~~l~~~~~~~----------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-------~~~g~~~g~~  355 (402)
T TIGR00897       300 IFTLALYYIPQHF----------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-------KHKGAAMSVL  355 (402)
T ss_pred             HHHHHHHHHHHcc----------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-------chhHHHHHHH
Confidence            4333333221000                013455666777788887766543 455666543       2377889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +...++|..++|.+.+.+.+..||...|++.+++.+++.+...+
T Consensus       356 ~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       356 NLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888877666655544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.22  E-value=4.1e-10  Score=114.70  Aligned_cols=187  Identities=12%  Similarity=0.018  Sum_probs=140.5

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +.|.+|.+....+..--++-++..+++.|+.+++|.++.+++.+...+.+...+..+.+|+|+|| +|.+|+.....+.+
T Consensus       216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~  294 (417)
T COG2223         216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGM  294 (417)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHH
Confidence            45667777778888877888889999999999999999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      +++..+..+..+...              +..+...+++..+.+++..|.-......++...||+       +-+...++
T Consensus       295 ~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-------~~G~v~G~  353 (417)
T COG2223         295 ALAAALLSLFLTGFG--------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-------ETGAVTGI  353 (417)
T ss_pred             HHHHHHHHccccccc--------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-------hhhHHHHH
Confidence            888888777431111              011333344433344444444444556666666764       24456777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhhcc
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGYHT  235 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~  235 (589)
                      .....++|++.-|...+...+..| +...|++-..+.+++.+.....+.+
T Consensus       354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888889999888988899888887 8888888777777676665555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.21  E-value=8.1e-10  Score=112.85  Aligned_cols=164  Identities=12%  Similarity=0.026  Sum_probs=124.3

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTK--YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +.|..+......|+.-..--++..+++.|+.+.  +|+++.+.+...+.+..+..++.+++++++|| +|+||.+.++.+
T Consensus       138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~  216 (310)
T TIGR01272       138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAF  216 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence            344555544555555445667788999999854  79999999999999999999999999999999 599999988888


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +..++.++.....                     +.. ...+.++.|++.+.++|...+...+.+|++.     ++++  
T Consensus       217 l~~~~~~l~~~~~---------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~as--  267 (310)
T TIGR01272       217 LAVLLSIGAALTH---------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGS--  267 (310)
T ss_pred             HHHHHHHHHHHcC---------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhH--
Confidence            7777765554432                     111 2235557899999999999999999887531     2223  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGC  221 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~  221 (589)
                      ++. ....+|+.+.|.+.|.+.|..|.+.+|++...+
T Consensus       268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            333 466789999999999999999988888765543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=1.4e-09  Score=116.99  Aligned_cols=184  Identities=14%  Similarity=0.084  Sum_probs=147.6

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccch--HHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRF--RTLLYGSIA  105 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~l~~~~~~  105 (589)
                      .|.+..-++.-++..-+..++.+....|..+.+|++..+...+..+..+...++.++.|++.|| +|.|  ++++.++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHH
Confidence            4455555566677777888888999999999999999999999999999999999999999999 5999  999988887


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      +.+..+.-.+.. .+...            ...+.+.+++.-++.|+..|...+..-++.+++.|+++      .+..|+
T Consensus       359 ~~~i~~~g~~G~-~~~~~------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFg  419 (477)
T PF11700_consen  359 WIIIPLYGLFGF-WPSFF------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFG  419 (477)
T ss_pred             HHHHHHHHHHHh-hhccc------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHH
Confidence            755444433311 01000            01256778888889999999999999999999999843      467899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +|.......+++||++.+.+.+..| .|..+....++.++++++++.
T Consensus       420 ly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  420 LYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999886 888887777776666666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.19  E-value=1.3e-09  Score=117.01  Aligned_cols=169  Identities=12%  Similarity=-0.039  Sum_probs=109.4

Q ss_pred             HHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH-
Q 045410           37 NETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL-  115 (589)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~-  115 (589)
                      ..++....+|++.++++.|+.+.+|++..+.+...++......++.++.|+++|| +|||+.++++.++..+....... 
T Consensus       251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHH
Confidence            3344467788999999999999999999999999988888888999999999999 59999888776654433322221 


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH-H
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV-A  194 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g  194 (589)
                      ....+                  +....+....+..++.+...+....+..|.+|+      +.|++++++.+...++ +
T Consensus       330 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~------~~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        330 LQNVS------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPA------QVRALGVGLSYAVANALF  385 (432)
T ss_pred             HHcCC------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CccchhhhHHHHHHHHHH
Confidence            11000                  122222222222233333445677888999997      4577888887665443 3


Q ss_pred             HHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHH
Q 045410          195 LVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +...|.+.+++. ..| |...+++.++..+++.+..++
T Consensus       386 g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        386 GGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            445777777664 455 555555555555555444443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.19  E-value=1e-09  Score=117.70  Aligned_cols=153  Identities=12%  Similarity=0.034  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH-HH
Q 045410           35 LGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG-IM  113 (589)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~-~~  113 (589)
                      ....++....++.+..++|.|+++.+|++..+.+++...+.++..++.+++|+++|| +|||++++.+.++..+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Confidence            344455667778888999999998899999999999888889999999999999999 5999998877554433221 11


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH-
Q 045410          114 TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT-  192 (589)
Q Consensus       114 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-  192 (589)
                      ......+                  +........++.+++.+...+....++.|.+|++      .|++++++.+...+ 
T Consensus       323 ~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~------~rg~~~g~~~~~~~~  378 (434)
T PRK15075        323 SWLVAAP------------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE------VRTAGFSLAYSLATA  378 (434)
T ss_pred             HHHHcCC------------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC------ccchheeHHHHHHHH
Confidence            1111001                  2222334445556666666777778899999873      46667777444333 


Q ss_pred             HHHHHHHHHHHHHHhhcchh
Q 045410          193 VALVVALTAVVYIQTNVSWI  212 (589)
Q Consensus       193 ~g~~~~~~~~~~l~~~~g~~  212 (589)
                      +++.++|.+.+++.+..|++
T Consensus       379 ~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        379 IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHhhhHHHHHHHHHHhcCCc
Confidence            45778999999999988854

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=1.6e-09  Score=117.98  Aligned_cols=176  Identities=15%  Similarity=0.049  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVS-IWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI  112 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~  112 (589)
                      +....++.....+....+.++|+.+.+|++..+.+.+.. ...++..++.+++|+++|| +||||.++++.++..+..+.
T Consensus       227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~  305 (491)
T PRK11010        227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAG  305 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence            333345555666666778888988889999999999975 5567999999999999999 59999888776655554433


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410          113 MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT  192 (589)
Q Consensus       113 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (589)
                      +......+                 .+.+.+.+..++..+..|...+...++..+..+++      ..++.+++.+...+
T Consensus       306 ~~~l~~~~-----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~------~~~t~~gl~~s~~~  362 (491)
T PRK11010        306 YWLLSITD-----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS------FSATQFALLSALSA  362 (491)
T ss_pred             HHHHHhcc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHH
Confidence            32211001                 13333444455555555555566678888887763      24556888888889


Q ss_pred             HHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhh
Q 045410          193 VALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGY  233 (589)
Q Consensus       193 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (589)
                      +|..+++.+.|++.+..||+..|.+..++.+++++.....+
T Consensus       363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888999999999999998887777777766655543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=8.9e-09  Score=109.68  Aligned_cols=356  Identities=16%  Similarity=0.160  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHhHhhhH---HHHHHHHHHhcCCc-hhHHHHHHHHH----HHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLI---ANMTVYLRTKYNMD-GILLVNVVSIW----GGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s-~~~~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      +....++..++++...   .....+.....+.+ ..+.+......    .+...+.++.-|.++||+ |||..+......
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence            3344555555544444   55566665555543 22333333333    578889999999999996 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH--HhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLA--IGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      ..+..+...+..                       +++++   +.+  -+.+...+...++++|...+      +.|...
T Consensus       102 ~~l~~~~~~~~~-----------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~------~~R~~~  149 (463)
T KOG2816|consen  102 TILPALCLLFQG-----------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSE------EERSSS  149 (463)
T ss_pred             HHHhHHHHHHHH-----------------------HHHhh---hcccccchhhhhhhhhhheeeccch------hHHHHH
Confidence            888888887743                       33333   222  23344566777888887654      468888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccc
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVN  263 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (589)
                      +++.+.....+..++|.+++.+.+..|.-..|.++.+..++.........|+...++.+..                   
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-------------------  210 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-------------------  210 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-------------------
Confidence            9998888888999999999999999999899999888877776665555444221111100                   


Q ss_pred             cCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHh-HHHHHH
Q 045410          264 LGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVA-MFPVWI  342 (589)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~  342 (589)
                         ......+.....            +....+..+..                      .+  ....|..+. ++..+.
T Consensus       211 ---~~~~~~~~~~~~------------~~~~~~~~~~~----------------------~~--~~~~r~~l~l~l~~~~  251 (463)
T KOG2816|consen  211 ---ATLRELTPGSLD------------SSHVADAFQSL----------------------TK--VGPDRLLLLLLLVAFL  251 (463)
T ss_pred             ---ccccccCCCccc------------chhhhhhhhhh----------------------cc--cCCCccchHHHHHHHH
Confidence               000001111000            00000000000                      00  000111111 111111


Q ss_pred             HHHHHHHhhhcchhhHHhhhhhcccccCcccc-ccc----ccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHH
Q 045410          343 TGIFCFLAMDQQNTIGILQAIQTNKRFGSFNV-PPG----WMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQR  417 (589)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~  417 (589)
                      ....   -..+.....   ....+... +|+. ..+    ....+..+..++..++.       .+.++.|       +.
T Consensus       252 ~~~~---~~~~~~~~~---~~yl~~~f-~w~~~~~s~~~~~~~~~~~i~~l~~~~~l-------~~~l~~~-------~~  310 (463)
T KOG2816|consen  252 SSLP---EAGGASDVL---LLYLKAKF-GWNKKEFSDLLSLVSILGIISQLLLLPLL-------SSILGEK-------RL  310 (463)
T ss_pred             HHHH---HhcCceeEE---EEEEeeec-CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhh-------hH
Confidence            1111   111001000   00111111 1111 111    12233333444443332       4444433       27


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHH
Q 045410          418 ITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFF  497 (589)
Q Consensus       418 i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  497 (589)
                      +..|+..-.+..+++++.+                 .. |................|...+++..+..++.+|++.++..
T Consensus       311 i~lGl~~~~~~~~~~af~~-----------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is  372 (463)
T KOG2816|consen  311 ISLGLLSEFLQLLLFAFAT-----------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS  372 (463)
T ss_pred             hhHHHHHHHHHHHHHHHhc-----------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence            8899999999999999875                 22 33334445555666788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccc
Q 045410          498 LSLSISSYINSALVNIIHGLTK  519 (589)
Q Consensus       498 ~~~~lg~~l~~~l~~~i~~~~~  519 (589)
                      ....+++.+++.+.+.+...+.
T Consensus       373 ~i~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  373 GIEGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHH
Confidence            9999999999999988765543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.17  E-value=2.1e-09  Score=113.32  Aligned_cols=166  Identities=10%  Similarity=-0.004  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |..+......++....++...+.++.|+. +.|.+..+.+.+.+...++..+..++.|++.|| +|+|+.+..+.++..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence            34455555566666666677788888985 589999999999999989999999999999999 5999999999988888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +.+.+...+                     +++.+++..++.|++.+...+....++.+. +++      .+++..+.++
T Consensus       283 ~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~  334 (382)
T PRK11128        283 RWGLMGSTT---------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS------EVIRLQALYS  334 (382)
T ss_pred             HHHHHHhhh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh------hhHHHHHHHH
Confidence            777666654                     677788889999999998888888887775 332      2345666654


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHH
Q 045410          189 -FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       189 -~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~  225 (589)
                       ....+|..+||.++|.+.|.+|+. .|+..+++.+++
T Consensus       335 ~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        335 ALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence             455678889999999999988874 555555544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.16  E-value=1.4e-09  Score=117.32  Aligned_cols=167  Identities=13%  Similarity=-0.004  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 045410           49 IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT  128 (589)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  128 (589)
                      ..+..+++.+++|++..+.++......++..++.+++|+++|| +|||+.+.++.++..++.+++.+......  .+   
T Consensus       303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---  376 (481)
T TIGR00879       303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--TG---  376 (481)
T ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--CC---
Confidence            3444455556789999999999999999999999999999999 59999999998888887777763220000  00   


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          129 GAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN  208 (589)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  208 (589)
                           .....+...+....++.+.......+....++.|.+|+      +.|++..++.+...++|.+++|.+.+.+.++
T Consensus       377 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       377 -----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL------SLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             -----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 00000112222222222222233457777888999986      4578889999999999999999999999998


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHh
Q 045410          209 VSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       209 ~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      .+|++.|++.+++.+++.++.++.
T Consensus       446 ~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       446 IGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             cCccceehhHHHHHHHHHHHHhee
Confidence            899998888776665555554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.14  E-value=1.6e-08  Score=108.01  Aligned_cols=163  Identities=14%  Similarity=0.062  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc--cc--chHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY--LG--RFRTLLYGSIASFLGMGIMTLTASIPKLRPP  125 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~  125 (589)
                      .....|+.+++|+++++.....+...+ -...-++.|.++|.+  +|  ||+-++++.++.+++...++......     
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-----   83 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-----   83 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-----
Confidence            446678899999999998876665443 345678899999996  23  44444556666555555555533111     


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          126 DCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYI  205 (589)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  205 (589)
                                  .+.....+..++..+|......+.=+++.|....+.    ..++..-+..+....+|.+++..+.|.+
T Consensus        84 ------------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p----~~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   84 ------------SSAAIAVVLLFLASFGYAFADVAADALVVELARREP----ESRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             ------------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                        133445555667788888888888888899775432    2266677888888999999999999999


Q ss_pred             HhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          206 QTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       206 ~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      .+..+++..|.+...+..+..+..++..+
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999998877666555544444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.11  E-value=1.5e-09  Score=114.94  Aligned_cols=169  Identities=9%  Similarity=0.021  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKY---NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +..+...+.....+.....+++.|+.+.+   +.+....+.+.++..+...++.++.|++.|| +|||+.++++.++..+
T Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHH
Confidence            33333344444444445556778877655   5667778888998888999999999999999 5999999999988888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH-H
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW-W  187 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~  187 (589)
                      +......+.                     +.+.+++.+++.|++..........+..+..++      +.+++..+. +
T Consensus       297 ~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~at~~~~~~  349 (396)
T TIGR00882       297 RIIGSSFAT---------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV------RLSATIYLIGF  349 (396)
T ss_pred             HHHHHHhcC---------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------ceEEEeehHHH
Confidence            777666644                     556677788888888766555555566665553      234444544 5


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      +....+|..+++.++|++.+..||+..|.+.+++.++..++
T Consensus       350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999877765555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.09  E-value=1.5e-08  Score=111.08  Aligned_cols=201  Identities=13%  Similarity=0.144  Sum_probs=148.6

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      ....+.+..++....+.-..+.+......+-+.+.++++.++.|++.+.+-++..+...+..+.+-|. =|-|.+-+|.+
T Consensus        92 ~~~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~  170 (735)
T KOG3626|consen   92 FANIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLV  170 (735)
T ss_pred             ccCcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-Cccceeeechh
Confidence            44556666666544444444457788888889999999999999999999999999999999999994 78899999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCC------------CC------------------C-CCC---CCCchhHH-HHHHHHHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDC------------TG------------------A-QCP---QPEGWQLS-ILYAGLAL  149 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~------------~~------------------~-~~~---~~~~~~~~-~~~~~~~l  149 (589)
                      ++++|++++++-    ++..+-|            +.                  . ...   ..+...++ +++++.++
T Consensus       171 ~m~lgsll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l  246 (735)
T KOG3626|consen  171 LMGLGSLLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLL  246 (735)
T ss_pred             HHHHHHHHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHH
Confidence            999999998762    2111111            00                  0 011   11222234 78888999


Q ss_pred             HHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cc-
Q 045410          150 LAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN------------------VS-  210 (589)
Q Consensus       150 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------------~g-  210 (589)
                      .|+|...+.+.-.+|+=|...+.      .-...+++.+....+|.++|.++++++...                  .| 
T Consensus       247 ~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA  320 (735)
T KOG3626|consen  247 LGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA  320 (735)
T ss_pred             hhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence            99999999999999988866542      233567888888999999999999887632                  23 


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHhhccc
Q 045410          211 WILGFAIPTGCFFLSIVVFLIGYHTY  236 (589)
Q Consensus       211 ~~~~f~~~~~~~~i~~~~~~~~~~~~  236 (589)
                      ||..|++++.+.++..+.+++..++.
T Consensus       321 WWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  321 WWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            88899999888887777777655443

>TIGR00896 CynX cyanate transporter

Probab=99.09  E-value=4.9e-09  Score=109.20  Aligned_cols=153  Identities=10%  Similarity=-0.001  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc-chHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG-RFRTLLYGSIASF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-rr~~l~~~~~~~~  107 (589)
                      |..+......++....++++.++++.|+++ .|.+..+.+.+.+.+.++..++.++.|+++|| ++ ||+.+..+.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence            344444455566677778888899999874 79999999999999999999999999999999 55 5667777777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++...+.+..                     +.... ...++.|++.+...|...+.+.+..+++     +.++..+++.
T Consensus       275 ~~~~~~~~~~---------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~  327 (355)
T TIGR00896       275 VGLCGLLFAP---------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA-----AQAAALSAMA  327 (355)
T ss_pred             HHHHHHHHhh---------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH-----HHHHHHHHHH
Confidence            7777666543                     11111 2346789999998888888777655432     3456677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Q 045410          188 YFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                      +...++|..++|.+.|++.++.|
T Consensus       328 ~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       328 QSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            77788899999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.09  E-value=2.8e-09  Score=114.49  Aligned_cols=177  Identities=11%  Similarity=-0.003  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ..+......++.....|++.+++|.|+++..|++..+.+++...+.+...++.+++|+++|| +|+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHH
Confidence            34455556666667778889999999998899999999999999999999999999999999 57554333333222221


Q ss_pred             ---HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          110 ---MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       110 ---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                         .+.+....   .                .+.+......++.|++.............|.+|+      +.|+++.++
T Consensus       331 ~~~~~~~~~~~---~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~  385 (438)
T TIGR00712       331 TIAVIVYWMNP---A----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGF  385 (438)
T ss_pred             HHHHHHHHhcC---C----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh------hheeeehhh
Confidence               11111111   0                0223333334444544333222223456788876      457778888


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          187 WYFSFTVAL-VVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       187 ~~~~~~~g~-~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ++...++|+ .++|.+.|.+.+..||...|++..+..+++.+..++.
T Consensus       386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T TIGR00712       386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  432 (438)
T ss_pred             hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            887777774 6899999999999999999887666555555544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.08  E-value=1.5e-09  Score=113.39  Aligned_cols=161  Identities=12%  Similarity=0.057  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH-H-HH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI-A-SF  107 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~-~-~~  107 (589)
                      .++.+....++.....+++..+++.|+.+.+|++..+.+.+.+.+.++..++.++.|+++||..+||+..+.... . ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            445555666667777778888999999999999999999999999999999999999999984233433322211 1 11


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++........                   ..+.....+..++.|+......+....+..|.+|+      +.|++..+++
T Consensus       297 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~  351 (379)
T TIGR00881       297 VSLLVYWLNP-------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK------KAAGTAAGFV  351 (379)
T ss_pred             HHHHHHhcCc-------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc------chhHHHHHHH
Confidence            1111111111                   01334455555666766556566667788898886      4578899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGF  215 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f  215 (589)
                      +...++|..++|.+.|.+.+.+||++.|
T Consensus       352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       352 GFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999998764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.08  E-value=4.1e-09  Score=109.51  Aligned_cols=155  Identities=14%  Similarity=0.059  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHhHhhhH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLI-ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      |.++......++....++... .+.+.|.++.+|.+..+.+.+.....++..++.++.|++.|| +|||+.+..+.++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence            334445555566666666666 667777777799999999999999999999999999999999 599999998877777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++.....+..                   . +.+.+++..++.|++.+...+...+++.|.+|+      +.|++.++++
T Consensus       289 ~~~~~~~~~~-------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~  342 (365)
T TIGR00900       289 LAILVVGLTP-------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA------ELLGRVFGAQ  342 (365)
T ss_pred             HHHHHHHhhc-------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHH
Confidence            7766666644                   0 256677888899999999999999999999986      5688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Q 045410          188 YFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                      +...++|..++|.++|++.+.+|
T Consensus       343 ~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       343 FSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999988654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.07  E-value=1.1e-08  Score=107.76  Aligned_cols=172  Identities=9%  Similarity=0.002  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +......++...+.+....++++|+.+.+|+++.+.+.+.+...++..++.++.|++.|| +|+|+.+..+.++..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHH
Confidence            333344444445555666778888888899999999999999999999999999999999 5999999998888877776


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      +.....                    .+.+..++..++.+++.+...+.......+..+++     +.++..  ..+...
T Consensus       281 ~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~  333 (382)
T PRK10091        281 MLFFFG--------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG-----ELLGAA--GGQIAF  333 (382)
T ss_pred             HHHHHH--------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc-----hHHHHH--HHHHHH
Confidence            554422                    02334445555556655544444443333433321     122222  234567


Q ss_pred             HHHHHHHHHHHHHHHhh-cchhHhHHHHHHHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQTN-VSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      ++|..+||.++|++.+. .+|++.+.+.+.+.++.+.....
T Consensus       334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            89999999999999985 67999988877666555544433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.07  E-value=1.5e-09  Score=116.38  Aligned_cols=162  Identities=17%  Similarity=0.059  Sum_probs=123.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|.++..++..++..++++......+.|.+..++ +..+.+++.+...++..++.++.|+++|| +|||+++..+.++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~  298 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMV  298 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence            3445555566666666666555555555554555 56677788888889999999999999999 599999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC-cchhhhhHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK-GKSQLESFFNW  186 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~  186 (589)
                      ++.+.+.+..                    .+.+.+++..++.|++.+...+..+++++|..+.++.+ +.+.++..+++
T Consensus       299 ~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       299 LGYLIFFFAG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHHHHHcc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            8877766532                    14455666777889999998999999999988754322 22346788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcch
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      +++...+|..+++.+.+++.+..||
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.06  E-value=2.9e-09  Score=113.49  Aligned_cols=164  Identities=9%  Similarity=-0.043  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHH-HHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRT-KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTL-LYGSIASF  107 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l-~~~~~~~~  107 (589)
                      ..+......++....++++.+++|.|+.+ ..|++..+.+.+.....++..++.+++|+++|| ++||+.. ....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHH
Confidence            34555567777888889999999999976 357889999999999999999999999999999 5987753 33333333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++. ......  +                  +....+.+..+.++|.....+.......|.+|+      +.|++++++.
T Consensus       322 ~~~-~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~a~g~~  374 (412)
T TIGR02332       322 AGW-LLASAT--D------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL------QARAIAIAVI  374 (412)
T ss_pred             HHH-HHHHhc--C------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch------HHHHHHHHHH
Confidence            332 222111  1                  111122222233333333233333444555654      5688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGC  221 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~  221 (589)
                      +...++|+.++|.+.+.+.+..| |++.|++.+++
T Consensus       375 ~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       375 NATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            99999999999999999999875 99888776554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10133 L-fucose transporter; Provisional

Probab=99.06  E-value=5.8e-09  Score=111.93  Aligned_cols=164  Identities=10%  Similarity=0.033  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYL-RTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      +...+..++.....++...+++.|+ ++.+|+++.+.++....+.++..++.+++|++.|| +|||+++..+.++..++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence            3344455666666677778888896 45789999999999999999999999999999999 599999998877776666


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      .+..+..                     +. ..+.+.++.|++.+.+.|...+...+.+|++.     .  .+.++..+ 
T Consensus       340 ~~~~~~~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-----~--~as~l~~~-  389 (438)
T PRK10133        340 LISAFAG---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-----K--YGSSFIVM-  389 (438)
T ss_pred             HHHHHcC---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-----c--cchhHHhH-
Confidence            5554432                     11 12455678899999999999999999887532     1  12333222 


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHH
Q 045410          191 FTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSI  226 (589)
Q Consensus       191 ~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~  226 (589)
                      ..+|+.++|.+.|++.+..| -+..|+++.+..+...
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            33577788888899999887 7888877665544443

>PRK10504 putative transporter; Provisional

Probab=99.05  E-value=8.5e-09  Score=111.82  Aligned_cols=158  Identities=11%  Similarity=-0.040  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |.....+...++...++.......+.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++..+.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3444455566666666555556677777777999999999999988888888899999999995 999999999888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +..++.+...                  ..+.+.+.+..++.|++.+...+..+.+..+.+|+      +.++..+++++
T Consensus       340 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~  395 (471)
T PRK10504        340 VSLLFMLVAL------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD------NLASSGNSLLS  395 (471)
T ss_pred             HHHHHHhccc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HhccchHHHHH
Confidence            7666655320                  01333444556677888888888888999998876      34667889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcch
Q 045410          189 FSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      ....+|..+|+.+++.+.+..++
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998876655

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.05  E-value=6.5e-09  Score=109.85  Aligned_cols=174  Identities=14%  Similarity=0.006  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGG-SSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .+..+...++...+.+...++.++|+.+ .|+++++.+++...... ...++.+++|++.|| +|+|+.+..+.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            3444445566666666677788888875 79999999999888765 566778999999999 59999999887765443


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ............               ..+....+...++.+++.+...+...+...+..+++     +.+++.+++.+.
T Consensus       288 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~  347 (390)
T TIGR02718       288 ALLWFAQAAFWL---------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG-----DQAGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHccc---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHH
Confidence            332222110000               002233444445556666776677777777765541     246678888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410          190 SFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~  226 (589)
                      ..++|..++|.++|++.+..|++..|.+.+++.+++.
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            8999999999999999999999988887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.05  E-value=1.4e-08  Score=108.05  Aligned_cols=189  Identities=12%  Similarity=0.024  Sum_probs=128.8

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .+.+|.+....++...+|.+...++|.|+++.+  +.........+..+...+..+++|+++|| +|+||++.++.+.+.
T Consensus       251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~  327 (462)
T PRK15034        251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMA  327 (462)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHH
Confidence            344576777777777777777778999988755  33344434455678889999999999999 599999999998877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCc-----------
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG-----------  176 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-----------  176 (589)
                      ++........  |.-             ...+.+.+.+..+...++.|.-......++.+.||+++.++           
T Consensus       328 i~~~~~~l~l--p~~-------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~  392 (462)
T PRK15034        328 IFSALLFLTL--PGT-------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA  392 (462)
T ss_pred             HHHHHHHHHh--ccc-------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHH
Confidence            7765543322  210             01255666666666666667767777888888887411111           


Q ss_pred             ----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          177 ----KSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       177 ----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                          +++-+...++......+|+++-|.+.+...+..| +...|+...+..++++++-+..+.
T Consensus       393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence                1245566777777888888899988777776654 777777777776666666555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=4.5e-09  Score=100.89  Aligned_cols=171  Identities=13%  Similarity=0.105  Sum_probs=135.6

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHH
Q 045410           20 DSQRPKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTL   99 (589)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l   99 (589)
                      +-+..+...+..|.+..+.++.....+=..+.-+.+.++.+|+|+.+++.+.+......++.+++.|.++||+ ||+-..
T Consensus       255 kLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~w  333 (459)
T KOG4686|consen  255 KLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWW  333 (459)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehh
Confidence            3444556777888888888888777777777778999999999999999999999999999999999999996 999776


Q ss_pred             HHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410          100 LYGS-IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS  178 (589)
Q Consensus       100 ~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  178 (589)
                      +.+. ++...+.....++..                       .=+.+..+.|+.........++.++...|+      +
T Consensus       334 v~~a~~~tl~~H~~l~Ft~l-----------------------sPy~~m~~lGLsysllAcslWP~va~~vpE------~  384 (459)
T KOG4686|consen  334 VASACILTLLGHSGLFFTFL-----------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPE------E  384 (459)
T ss_pred             HHHHHHHHHHHhhhHHhhhc-----------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCH------H
Confidence            6664 455667777777652                       234556677888777777788888888886      5


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhHhHHHHHH
Q 045410          179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVS---WILGFAIPTG  220 (589)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g---~~~~f~~~~~  220 (589)
                      +.+++++..+...|+|-.+.|+++|.+.+.-|   |--.|++...
T Consensus       385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            68889999999999999999999999998654   3335554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.04  E-value=2.4e-08  Score=108.48  Aligned_cols=155  Identities=8%  Similarity=-0.042  Sum_probs=110.2

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 045410           54 VYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCP  133 (589)
Q Consensus        54 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  133 (589)
                      +++.+++|++..+..+......+...++.+++|+++|| +|||+.++.+.++.+++.+.+......+.            
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQA------------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence            44446789988888888888888889999999999999 59999999999999988887765431110            


Q ss_pred             CCCchhHHHHHHHHHHHHHhhcc-ccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 045410          134 QPEGWQLSILYAGLALLAIGSGG-IRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ------  206 (589)
Q Consensus       134 ~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------  206 (589)
                           .......+.++.+++.+. ..|+.+.++.|.+|+      +.|++++++.+...++|.++++.+.+.+.      
T Consensus       362 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~  430 (479)
T PRK10077        362 -----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV  430 (479)
T ss_pred             -----ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence                 111233344444444443 347788999999986      45888999988888888888866655443      


Q ss_pred             hhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          207 TNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       207 ~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      +.++|++.|++.++..+++.++.+..
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHhc
Confidence            56788888887665555554444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.02  E-value=5.6e-09  Score=113.39  Aligned_cols=171  Identities=9%  Similarity=-0.059  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchH-----HHH--HHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFR-----TLL--YGSI  104 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~l~--~~~~  104 (589)
                      +.+.+..++.....+++..+++.|+.+++|++..+++.+.+++.++..++.+++|+++|| +|||+     ...  +..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHH
Confidence            334444444445556677889999998899999999999999999999999999999999 58762     222  2222


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +..++..+.....                     +.+..++..++.+++.+...+...++..+..|       +.++...
T Consensus       334 l~~i~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~  385 (476)
T PLN00028        334 LGGVFCIWLGRAN---------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-------RSLGVIS  385 (476)
T ss_pred             HHHHHHHHhcccc---------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-------hhchhhh
Confidence            2222222222211                     33344444555566555555555666666543       2466677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ++.+...++|+.+++.+.+ ..+..+|+..|++.+++.+++.++.++.
T Consensus       386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            7766666666666665433 2223468899988877777666655544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.02  E-value=1.6e-08  Score=108.06  Aligned_cols=147  Identities=17%  Similarity=0.078  Sum_probs=106.6

Q ss_pred             hHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 045410           44 ASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLR  123 (589)
Q Consensus        44 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~  123 (589)
                      ..+.+..+++.|+.+ .|.+..+.+.+.+...++..++.++.|+++|| +|||+.+..+.++..++.+......   .  
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~---~--  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIP---Q--  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHc---c--
Confidence            334566778888875 69999999999999999999999999999999 5999999988877666554444322   0  


Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045410          124 PPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVV  203 (589)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  203 (589)
                                    .....+....+..+++..+..+..+.++.|.+|+      +.|++.+++.+...++|+.++|.+.+
T Consensus       319 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        319 --------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL------EVRGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             --------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH------HHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence                          0112122222222233334456677888999986      45778899988888999999999999


Q ss_pred             HHHhhcchhHhHHH
Q 045410          204 YIQTNVSWILGFAI  217 (589)
Q Consensus       204 ~l~~~~g~~~~f~~  217 (589)
                      ++.+.+|+....++
T Consensus       379 ~l~~~~g~~~~~~~  392 (426)
T PRK12307        379 WLGITMGLGAALTF  392 (426)
T ss_pred             HHHHcccHHHHHHH
Confidence            99998886654333

>PRK10054 putative transporter; Provisional

Probab=99.01  E-value=8.2e-09  Score=109.34  Aligned_cols=174  Identities=9%  Similarity=0.030  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRT--KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      |..+......++..+.+.....+++.|+..  +.+.+....+.+............++.|++.||+ ++|+.+..+.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            344444455566555555555666777643  4566677778888888888778888999999995 9999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++...+.+..                    .+.+.+++..++.++|.+...|...+++.+..|++      .|++.++.
T Consensus       285 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~  338 (395)
T PRK10054        285 VIGLVGFIFSG--------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSA  338 (395)
T ss_pred             HHHHHHHHHcc--------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhH
Confidence            88877766532                    14555667778999999888888888999988763      24455665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      .. ...+|..+||.++|.+.|+.|....|++.+....+..++.+
T Consensus       339 ~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        339 QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            43 55689999999999999999988888776555555544444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.01  E-value=3.6e-11  Score=130.99  Aligned_cols=189  Identities=14%  Similarity=0.171  Sum_probs=3.0

Q ss_pred             HHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 045410           37 NETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLT  116 (589)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~  116 (589)
                      ..++. ...++.......-+++.|+++.++.|++.+.+-++..+..++..++++|. -|-|.+-.|.+++++|++++++ 
T Consensus        11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l-   87 (539)
T PF03137_consen   11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL-   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc-
Confidence            33444 66677777777788999999999999999999999999999999999994 7889999999999999998876 


Q ss_pred             hcCCCCCCCCCC--------------CCCC---------------C----CCCchhHHHHHHHHHHHHHhhccccccHHH
Q 045410          117 ASIPKLRPPDCT--------------GAQC---------------P----QPEGWQLSILYAGLALLAIGSGGIRPCNIA  163 (589)
Q Consensus       117 ~s~~~~~~~~~~--------------~~~~---------------~----~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~  163 (589)
                         |++..+.|.              ...+               -    .........++++.++.|+|....++.-.+
T Consensus        88 ---Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   88 ---PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             ---cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence               333322220              0011               0    111112467899999999999999999999


Q ss_pred             HhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------cc-hhHhHHHHHHH
Q 045410          164 FGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN---------------------VS-WILGFAIPTGC  221 (589)
Q Consensus       164 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------------~g-~~~~f~~~~~~  221 (589)
                      |+=|..++++      -....++.+....+|..+|.++++.+...                     .| ||..|.+.+++
T Consensus       165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9999877633      33457888888889999998888776521                     23 88888887777


Q ss_pred             HHHHHHHHHHhhcccc
Q 045410          222 FFLSIVVFLIGYHTYI  237 (589)
Q Consensus       222 ~~i~~~~~~~~~~~~~  237 (589)
                      .++..+.++...++.+
T Consensus       239 ~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHcCCccCC
Confidence            6666655555544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00895 2A0115 benzoate transport

Probab=99.00  E-value=5.9e-09  Score=109.67  Aligned_cols=148  Identities=12%  Similarity=-0.013  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +..+...+..++....++.+..+++ ++.+++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+....+...+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            3344444555666677777777777 66678999999999999999999999999999999994 999554443333333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      ..++.....                     +.+..++..++.|++.+...+...+++.|.+|+      +.|++.+++.+
T Consensus       328 ~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~  380 (398)
T TIGR00895       328 AVLVGSTLF---------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT------AIRATGVGWAI  380 (398)
T ss_pred             HHHHHHHhh---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH------HHHHHHHHHHH
Confidence            333222122                     445566777889999999999999999999986      46888999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045410          189 FSFTVALVVALTAVVYI  205 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l  205 (589)
                      ....+|..++|.++|++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999998875

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.00  E-value=4.1e-08  Score=104.29  Aligned_cols=171  Identities=14%  Similarity=-0.064  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      ++......++.....+......+.|+.+.+|+++.+.++.......+..++.++.|+++|| +|+|+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3433344444455556666777888888899999999998888888888999999999999 599999999988888887


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      ....+....+                ..+.+.++++.++.|++.+...+..........+       +.+++..+.+++.
T Consensus       296 ~~~~~~~~~~----------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~  352 (406)
T PRK15402        296 LLAALATVIS----------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-------VSKGTVSAAMGML  352 (406)
T ss_pred             HHHHHHHHcc----------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-------ccccHHHHHHHHH
Confidence            7776643111                1144556777888999988877776665443222       2366788888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHH
Q 045410          191 FTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLS  225 (589)
Q Consensus       191 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~  225 (589)
                      ..+|..+|+.+.+.+.+..++....+...+..++.
T Consensus       353 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        353 SMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            88999999999999888777665444444333333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.98  E-value=7.8e-07  Score=89.86  Aligned_cols=149  Identities=15%  Similarity=0.091  Sum_probs=105.9

Q ss_pred             HhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc
Q 045410           58 TKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEG  137 (589)
Q Consensus        58 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  137 (589)
                      +++|++..|.+.+.........+..++.|.++||+ |||+..+...++.++.++..-. .                    
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-~--------------------  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-S--------------------  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-c--------------------
Confidence            57999999999999999999999999999999995 9999999999988887764333 2                    


Q ss_pred             hhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcch--hHh
Q 045410          138 WQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY-FSFTVALVVALTAVVYIQTNVSW--ILG  214 (589)
Q Consensus       138 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~g~--~~~  214 (589)
                       +...++++|++.|++.....++--+.+.....+..-++ +-++.-++... ..+.+-++.+..++.++.+..+.  ..+
T Consensus       120 -~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP  197 (354)
T PF05631_consen  120 -NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP  197 (354)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence             57889999999999999888877766555432211111 12333333322 22334455555666666666554  678


Q ss_pred             HHHHHHHHHHHHHHHH
Q 045410          215 FAIPTGCFFLSIVVFL  230 (589)
Q Consensus       215 f~~~~~~~~i~~~~~~  230 (589)
                      |..+..+..++.++..
T Consensus       198 F~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  198 FDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8887776665555433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.98  E-value=3.5e-08  Score=107.38  Aligned_cols=170  Identities=12%  Similarity=0.071  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      ..++...++..+....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+| +++++.+..+.+++.++.+
T Consensus       221 ~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  221 RSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALL  299 (524)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHH
Confidence            333444444445545556678888889999999999999999999999999999999999 5999999999998888888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      .++++.                     +.+...++.++.|++.........+.+-+..|+      +.|++.++++++..
T Consensus       300 ~lal~~---------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~------~~~GRv~si~~~~~  352 (524)
T PF05977_consen  300 LLALSP---------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD------WVRGRVFSIYQMVF  352 (524)
T ss_pred             HHhcch---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHhHHHHHHHHHH
Confidence            888866                     677788888899999988888888888888876      56889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      ..+..+|..+.|.+.+.+|-+..+.++++..++..++.
T Consensus       353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887776555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.98  E-value=1.9e-08  Score=109.02  Aligned_cols=178  Identities=15%  Similarity=-0.010  Sum_probs=119.8

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHH-------
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTL-------   99 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l-------   99 (589)
                      +++.++...+..++....++.+.+++|.|+.+.+|++..+.+++.++..++..++.+++|+++||+ ++|+..       
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~  337 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK  337 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence            345667777888888889999999999999999999999999999999999999999999999994 654321       


Q ss_pred             -HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410          100 -LYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS  178 (589)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  178 (589)
                       ..+......+...+.... ...                 +....++...+.+.+.+...+.......|..|       +
T Consensus       338 ~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~  392 (465)
T TIGR00894       338 IFNGIGGLGPGIFAYALPY-LSA-----------------AFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------R  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCC-----------------chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-------h
Confidence             111111111111111111 000                 22333444444455545444544444445443       3


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHhHHHHHHHHHHHHHHHH
Q 045410          179 QLESFFNWWYFSFTVALVVALTAVVYIQTNV---SWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      .++...++.+...++|+.++|.+.+++.+..   +|+..|.+.++..+++.++..
T Consensus       393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            4778888999999999999999999887643   378888887766666654433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.97  E-value=4.9e-08  Score=103.63  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHH-HHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWG-GSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT  128 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  128 (589)
                      .+.+.++.+++|+++.+.+++.+... .+..++.+++|++.|| +|||+.+..+.++..+..+.+......+.       
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-------  301 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTPK-------  301 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence            44556777889999999999987654 4678999999999999 59999988877776665444432110111       


Q ss_pred             CCCCCCCCchhHHHHHHHH----HHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          129 GAQCPQPEGWQLSILYAGL----ALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY  204 (589)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  204 (589)
                                +.+.+++..    +..|++.+...+....++.+.+|.+      .    .+++....++|..+++.++|.
T Consensus       302 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~l~~~~~~~~~G~  361 (402)
T PRK11902        302 ----------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT------Q----YALLSALASVGRVYVGPTSGY  361 (402)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH------H----HHHHHHHHHHHHHHHHHHHHH
Confidence                      334444443    3455666666777777777776642      2    344444456777766678999


Q ss_pred             HHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          205 IQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       205 l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      +.+.+||+..|.+.+++.++++++.
T Consensus       362 l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        362 LVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877776665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.96  E-value=1.9e-08  Score=107.78  Aligned_cols=165  Identities=18%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +.|.....++..++..++.....+..+.|.+..+|.+ ...+.+..+..+...++.++.++++|| +|+|+++..+.++.
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~  300 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLA  300 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHH
Confidence            4466667777888888887777777777877778877 567788888999999999999999999 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC-cchhhhhHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK-GKSQLESFFN  185 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~  185 (589)
                      +++.++..+..                   ..+.+.+++..++.|++.+...+...++++|..+.++.+ +++.-+..++
T Consensus       301 ~~~~~~~~~~~-------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  301 ALGFLLLFFLG-------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHHH-------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            99999888764                   126788888999999999999999999999999865433 2334567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchh
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWI  212 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~  212 (589)
                      .+.....+|..+++.+.+.+.+..|+.
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            899999999999999999887665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.96  E-value=7.1e-08  Score=102.16  Aligned_cols=164  Identities=5%  Similarity=-0.077  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .++..+...++...+.++..+++++++.+++|++..+.+.+...+.++..++.++.|++.||. +| +.++.+.++..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~~~  294 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHHHH
Confidence            344444445555566666667775655668899999999999999999999999999999993 54 4444444443333


Q ss_pred             -HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          110 -MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       110 -~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                       .++.....                     +.+.+.+..++.|++.+...+...+++.+..|++       +++..+++.
T Consensus       295 ~~~l~~~~~---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  346 (394)
T PRK10213        295 ALVLTLWGS---------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQV  346 (394)
T ss_pred             HHHHHHHhh---------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHH
Confidence             33333322                     4566777788899999999998898888887642       223345555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHH
Q 045410          189 FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFF  223 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  223 (589)
                      ...++|..+|+.++|++.+..|++..+...+++.+
T Consensus       347 ~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        347 AVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            67789999999999999999998888887665443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.96  E-value=1.7e-08  Score=109.72  Aligned_cols=155  Identities=11%  Similarity=0.029  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ..+......++..+.+++...+++.|+++.+|+++.+.+++.....++..++.++.|++.|| +|||+.+.++.++..++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVG  334 (485)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHH
Confidence            34445566677778888888899999999999999999999999999999999999999999 59999999998888888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ..++.+.. .+.                .+.+.+....++.|+|.+...+.......+..|+      +.|+++.++++.
T Consensus       335 ~~~~~~~~-~~~----------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~  391 (485)
T TIGR00711       335 FYWRAFTF-TPD----------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP------HKIARGSSLSNF  391 (485)
T ss_pred             HHHHhccC-CCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHhHHHHHHHH
Confidence            87766321 010                1345566667888999988877777777777775      457788999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 045410          190 SFTVALVVALTAVVYIQTN  208 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~  208 (589)
                      ..++|..+|+.+.+.+.++
T Consensus       392 ~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       392 TRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.94  E-value=5.2e-08  Score=102.25  Aligned_cols=160  Identities=10%  Similarity=0.048  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +.......+....++....+.+.|+.+.+|.++.+.+.+.+...++..++.++.|++.|| +|||+.+..+.++..++..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~  287 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAV  287 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence            333344445555667777778888988999999999999999999999999999999999 5999999999888888777


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      ++......+                ......++...++.|++.+...+.......|.+|+       .+++..++++...
T Consensus       288 ~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~  344 (385)
T TIGR00710       288 LLEITAILG----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGTLR  344 (385)
T ss_pred             HHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHHHH
Confidence            666543111                01334455566778899998888888888887653       2556677766655


Q ss_pred             H-HHHHHHHHHHHHHHhhcchhHhHH
Q 045410          192 T-VALVVALTAVVYIQTNVSWILGFA  216 (589)
Q Consensus       192 ~-~g~~~~~~~~~~l~~~~g~~~~f~  216 (589)
                      . .|++.++. .+.+.+..+|...+.
T Consensus       345 ~~~g~i~~~~-~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       345 LVLGAIVGYL-VSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHH-HHhccccChHHHHHH
Confidence            4 45555554 445555444544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.92  E-value=2.4e-08  Score=102.04  Aligned_cols=166  Identities=13%  Similarity=0.091  Sum_probs=134.3

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL  115 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~  115 (589)
                      ...++..=+.-++.+.-..|...++|++..+...+.....+...+++++.|+|.|| +|-|+++.++++++.+.++...+
T Consensus       259 iA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~  337 (438)
T COG2270         259 IARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIF  337 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHH
Confidence            34444444445667777889889999999999999999999999999999999999 59999999999998888877777


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVAL  195 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  195 (589)
                      ..                     ....++++-++.|+..|...+.+=++.++..|++++.      +.|++|......+.
T Consensus       338 ~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~------~fFglyaltgra~S  390 (438)
T COG2270         338 LE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG------RFFGLYALTGRAAS  390 (438)
T ss_pred             cc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc------ceeehhhhhhhHHH
Confidence            54                     2234666667899999999999999999999986543      46999999999999


Q ss_pred             HHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHH
Q 045410          196 VVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       196 ~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~  229 (589)
                      ++||.+.+.+.+..| -|..+....++..++++++
T Consensus       391 ~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         391 FLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            999999999988665 6666665555555555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.92  E-value=3.3e-08  Score=107.94  Aligned_cols=153  Identities=10%  Similarity=-0.063  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .........++..+.+++...+++.|+++.+|+++.+++.......++..++.++.|++.|| +|||+.+..+.++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALS  338 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHH
Confidence            33445556667777778888899999999999999999999999999999999999999999 59999999898888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ...+.+... .                 .+.+..+...++.|+|.|...+.....+.+..|+      +.++.+.++++.
T Consensus       339 ~~~l~~~~~-~-----------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~------~~~g~~~~~~~~  394 (495)
T PRK14995        339 FYGLAMTDF-S-----------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPP------EKAAAAGAIETM  394 (495)
T ss_pred             HHHHHHhcC-C-----------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH------HhcchHHHHHHH
Confidence            776655321 0                 1334556677889999999888888888888776      346677888889


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 045410          190 SFTVALVVALTAVVYIQT  207 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~  207 (589)
                      ..++|..+|+.+.+.+.+
T Consensus       395 ~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        395 AYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999888765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.91  E-value=5.3e-08  Score=103.32  Aligned_cols=153  Identities=13%  Similarity=0.080  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           48 LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      ...++|.|+++..+ ++.+.+++.+...+....+..+.+++.||.++.++.+..+.++..++..++.+.+          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            44567888876555 7788888888877766655555566665535777777788877777777666655          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +.+.+++..++.+++.+...|...+++.|..|+      +.|++.+++++...++|..+||.++|++.+
T Consensus       296 -----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~------~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        296 -----------NLQQLFTLICLFYIGSIIAEPARETLSASLADA------RARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc------ccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence                       445566667788888888889999999999986      347778889989999999999999999988


Q ss_pred             hcc----hhHhHHHHHHHHHHHHHH
Q 045410          208 NVS----WILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       208 ~~g----~~~~f~~~~~~~~i~~~~  228 (589)
                      ..+    ....+.+..++.++..+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        359 LGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHhhcCCcchHHHHHHHHHHHHHHH
Confidence            642    244555444444444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.91  E-value=2.7e-08  Score=107.25  Aligned_cols=164  Identities=16%  Similarity=0.176  Sum_probs=123.8

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|.++....+.++...+++......+.|+++.+|.++...++......++..++.++.++++|| +|+|+++.++.++..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~  305 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGT  305 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHH
Confidence            3445555566666667766666666777777788877666655555566778899999999999 599999999999888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC-cchhhhhHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK-GKSQLESFFNW  186 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~  186 (589)
                      ++.+.+.+..                   ..+.+.+++..++.++|.+...+...++.+|..|+++.+ +.+..+..++.
T Consensus       306 i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        306 CGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            8877776532                   114566677778899999999999999999988765322 22345777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcch
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      +++...+|..+|+.+.+.+.+..||
T Consensus       367 ~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999888765554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.91  E-value=4.6e-08  Score=117.92  Aligned_cols=162  Identities=12%  Similarity=0.034  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGI-LLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ++..+...++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence            34344444455555566778899999999999999 999999999999999999999999994 9999999888888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      .+++.+..                     +.+.++++.++.|++.+...+...+++.+..|+      +.|++++++.++
T Consensus       313 ~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~rg~~~~~~~~  365 (1146)
T PRK08633        313 LFLLPTAP---------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE------KELGKVLAANNF  365 (1146)
T ss_pred             HHHHHHhh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc------cchhhhhHHHHH
Confidence            77776654                     556677778889999999888899999998886      347788999888


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cchhHhHHHHHH
Q 045410          190 SFTVALVVALTAVVYIQTN-VSWILGFAIPTG  220 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~  220 (589)
                      ..++|.++++.+++.+... +++...|++.+.
T Consensus       366 ~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            8889998888777666542 344445554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.90  E-value=2.8e-08  Score=108.71  Aligned_cols=165  Identities=13%  Similarity=0.020  Sum_probs=105.2

Q ss_pred             HHHHHHhHhhhHHHHHHHHHHhcCCchhHHHH------------HHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH
Q 045410           38 ETFEKLASMSLIANMTVYLRTKYNMDGILLVN------------VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA  105 (589)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~  105 (589)
                      .++..+.+|++..+.|.++. ..|++..+.+.            ...+..++..++.++.++++|| +|||+.++++.++
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHH
Confidence            34455677888788787774 67876543221            1233334555678899999999 5999999998887


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          106 SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       106 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      .+++..+..+......                 ....+....+...++..+..+....+.+|.+|+      +.|+++.+
T Consensus       375 ~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~------~~R~~~~g  431 (502)
T TIGR00887       375 LTVLFFVLGFAYNHLS-----------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT------RYRSTAHG  431 (502)
T ss_pred             HHHHHHHHHHHHHhcc-----------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch------hHHHHHHH
Confidence            7777666654320000                 111111111122222333456677888999997      56889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----------cchhHhHHHHHHHHHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTN----------VSWILGFAIPTGCFFLSIV  227 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~~  227 (589)
                      +.+....+|++++|.+.+++.+.          .++...|++.++..+++.+
T Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       432 ISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999998873          2344455555544444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.83  E-value=7e-08  Score=116.23  Aligned_cols=183  Identities=9%  Similarity=-0.063  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |.++...+..++..+.++++.++++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            3455555666666677777888999999999999999999999999999999999999999985 877777766666666


Q ss_pred             HHHHHHHhhcCCCCCCCCC-CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDC-TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +.+.+.+.. ......+.. ..-..+. ...+.+.++++.++.|++.+...+...+++.+.+|++      .|++.++.+
T Consensus       304 ~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g~~  375 (1140)
T PRK06814        304 FGLDLAFAS-SSVPAEPAQLKSILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIAAN  375 (1140)
T ss_pred             HHHHHHhcc-cccccccccccchhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeHHH
Confidence            555444420 000000000 0000000 0014466777888899999999999999999999874      466788998


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hcchhHhHHHHHH
Q 045410          188 YFSFTVALVVALTAVVYIQT-NVSWILGFAIPTG  220 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~  220 (589)
                      +...++|..+++.+.+.+.+ ..++...|++.+.
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            88999999999999888874 3455655554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.79  E-value=8.6e-08  Score=99.84  Aligned_cols=144  Identities=17%  Similarity=0.043  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWG-GSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .+..++..++..++++...++++.|+.+ +|++..+.+.+.++.. +...++.+++|+++|| +|||+.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence            5555566677788888888999999986 9999999998888766 5678999999999999 59999999998887777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      .....+..+.....        +  ....+.+.+..+.++.+++.+...+...+++.|.+|+      +.|++.+++++.
T Consensus       289 ~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~  352 (356)
T TIGR00901       289 NAGFVWLASNGHHD--------G--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP------KFGATQMALLSS  352 (356)
T ss_pred             HHHHHHHHhcCccc--------c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC------CccHHHHHHHHH
Confidence            66555432111000        0  0001446677778888999999999999999999997      457778888665


Q ss_pred             HHH
Q 045410          190 SFT  192 (589)
Q Consensus       190 ~~~  192 (589)
                      ..+
T Consensus       353 ~~~  355 (356)
T TIGR00901       353 LSA  355 (356)
T ss_pred             HHh
Confidence            543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.79  E-value=2.8e-07  Score=96.56  Aligned_cols=166  Identities=11%  Similarity=-0.023  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccch---HHHHH-HHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRF---RTLLY-GSI  104 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~l~~-~~~  104 (589)
                      |.++.+....++....+|++.+++|.|+++ .|++.. .+....+..+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            556777778899999999999999999964 678764 565555555544444   57888884 653   33232 333


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      +.++......+..                     +....++...+.+++.....+..+++.+|.+|+      +.|+++.
T Consensus       266 ~~a~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~rgt~~  318 (368)
T TIGR00903       266 LIAAFFLALAFEL---------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK------ELHGKAA  318 (368)
T ss_pred             HHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch------hhcCccc
Confidence            3333333333322                     222334444556666666677788999999997      4588899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      ++.+...++|++.+|.+.+.+..  +.+..|.+.+...+++.+..
T Consensus       319 G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       319 GAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887773  55556665555544444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.79  E-value=2e-07  Score=101.16  Aligned_cols=166  Identities=17%  Similarity=0.073  Sum_probs=118.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|.++..+...++.....+...+..+ |+.+...-+....+.+.++..+...++.++.++++|| +|+|++++++.++.+
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~  307 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAI-YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPV  307 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhee-eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHH
Confidence            36666666667777666665555554 4433333356666777777778888999999999999 599999999988777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCC-CCcchhhhhHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTT-PKGKSQLESFFNW  186 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~  186 (589)
                      ++.+...+....+                ..+.+.+++.-++.+++.+...+...++++|..+.++ +.+++..+..++.
T Consensus       308 ~~~~~~~~~~~~~----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        308 LSCGVLLLMGLAA----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHHhccC----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            7666654421011                1145666677778899999999999999999977542 2222334567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcch
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      +.+...+|..+++.+.|++.+..|+
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8888999999999999998876655

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.78  E-value=5.6e-07  Score=95.26  Aligned_cols=157  Identities=13%  Similarity=-0.021  Sum_probs=115.6

Q ss_pred             HHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045410           42 KLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPK  121 (589)
Q Consensus        42 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~  121 (589)
                      ..........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||+ ++|+++..+.+ ..+....+.+..    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence            344455556677888888999999999999999999999999999999995 99998887753 333333333333    


Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 045410          122 LRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTA  201 (589)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  201 (589)
                                       +.+...+..++.|++.+...+...+.+.+..|+ +    ..+++.+++.+...++|..++..+
T Consensus       292 -----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~----~~~g~~~a~~~~~~~~~~~~~~~~  349 (393)
T PRK11195        292 -----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-L----VGAGHSIAVQNFNENLAMLLMLGL  349 (393)
T ss_pred             -----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-c----ccchhHHHHHhHHHHHHHHHHHHH
Confidence                             455566677788999888888888888775332 1    235778888889999999999988


Q ss_pred             HHHHHhhcchhHhHHHHHHHHHHHHH
Q 045410          202 VVYIQTNVSWILGFAIPTGCFFLSIV  227 (589)
Q Consensus       202 ~~~l~~~~g~~~~f~~~~~~~~i~~~  227 (589)
                      .+.+ +..|-+..+.+..+..++.+.
T Consensus       350 ~~~~-~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        350 YSLL-VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            8755 557777666665554444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.78  E-value=2e-07  Score=97.82  Aligned_cols=146  Identities=12%  Similarity=0.004  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMG  111 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~  111 (589)
                      +......++...+.+....+.+.++.+.+|+++.+.+.+.+...++..++.++.|+++|| +|||+.+..+.++..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence            333334444445555666667778888899999999999999999999999999999999 5999999988876555433


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH-
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS-  190 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-  190 (589)
                      ........+                 .+.+.+.++..+.+.+.+...+.....+.|..|+       .+++..+..+.. 
T Consensus       276 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~  331 (377)
T PRK11102        276 WLVVSALLD-----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGTLR  331 (377)
T ss_pred             HHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHHHH
Confidence            332221011                 1334444444455555555556666677776653       244455553332 


Q ss_pred             HHHHHHHHHHHH
Q 045410          191 FTVALVVALTAV  202 (589)
Q Consensus       191 ~~~g~~~~~~~~  202 (589)
                      ..+|..+++.++
T Consensus       332 ~~~g~~~g~~~~  343 (377)
T PRK11102        332 FGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            345666666543

>TIGR00898 2A0119 cation transport protein

Probab=98.77  E-value=1.1e-07  Score=104.13  Aligned_cols=140  Identities=14%  Similarity=0.010  Sum_probs=98.8

Q ss_pred             hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCch
Q 045410           59 KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGW  138 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  138 (589)
                      .++.+....   .....+....+.++.++++|| +|||+.+.++.++..++.+++.+..+.                   
T Consensus       352 ~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~~-------------------  408 (505)
T TIGR00898       352 NLGGNIYLD---LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPVD-------------------  408 (505)
T ss_pred             ccCCChHHH---HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCCC-------------------
Confidence            455554333   334455667788899999999 599999999988888887777664410                   


Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHH
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIP  218 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  218 (589)
                      ..+...+..++.+++.+...+..+.+..|.+|+      +.|++++++.+....+|++++|.+.+ +. ..++..++.+.
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~  480 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPT------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLF  480 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccccH------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHH
Confidence            123344444556666677778889999999987      45888899999999999999999888 44 35566666665


Q ss_pred             HHHHHHHHHHH
Q 045410          219 TGCFFLSIVVF  229 (589)
Q Consensus       219 ~~~~~i~~~~~  229 (589)
                      +++.+++.+..
T Consensus       481 ~~~~~~~~~~~  491 (505)
T TIGR00898       481 GGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHH
Confidence            55554444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.77  E-value=3.2e-07  Score=96.90  Aligned_cols=143  Identities=8%  Similarity=0.023  Sum_probs=93.1

Q ss_pred             HhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045410           45 SMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRP  124 (589)
Q Consensus        45 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~  124 (589)
                      ......+.+.|+.+++|+++.+.+.+.+...+...++.++.|++.|| +|||+.+..+.++..++.+.+.+..       
T Consensus       219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-------  290 (392)
T PRK10473        219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP-------  290 (392)
T ss_pred             HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            33444556777888899999999999999999999999999999999 5999999999998888888777754       


Q ss_pred             CCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          125 PDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY  204 (589)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  204 (589)
                                    +.+..+....+.+.|.+...+..  ...+..|.++   +  -+...+    ...++..+++.++++
T Consensus       291 --------------~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~---~--~g~~~~----~~~~~~~~g~~~~~~  345 (392)
T PRK10473        291 --------------SHAVSLFGITLICAGFSVGFGVA--MSQALGPFSL---R--AGVASS----TLGIAQVCGSSLWIW  345 (392)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcc---c--ccHHHH----HHHHHHHHHHHHHHH
Confidence                          22233333334344433333332  2233444321   1  112222    334566677777778


Q ss_pred             HHhhcchhHhHHHHHH
Q 045410          205 IQTNVSWILGFAIPTG  220 (589)
Q Consensus       205 l~~~~g~~~~f~~~~~  220 (589)
                      +.+..|+.....+.+.
T Consensus       346 l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        346 LAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHhccchhHHHHHH
Confidence            8777777654444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.75  E-value=4.4e-08  Score=101.27  Aligned_cols=141  Identities=17%  Similarity=0.115  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMD-GILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI  112 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~  112 (589)
                      .+...++..+.++....+++.|+.+.+|++ ..+.+.+.++..+...++.++.|+++|| +|+|+.+........++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHH
Confidence            444555555677778899999999999999 8999999999999999999999999999 59998888888877777766


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410          113 MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT  192 (589)
Q Consensus       113 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (589)
                      +.+....                  .+....+...++.|++.+...+...+++.|.+|+      +.+++..++++...+
T Consensus       290 ~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~  345 (352)
T PF07690_consen  290 LLLLPFS------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP------EYRGTAFGLFNSIGS  345 (352)
T ss_dssp             HCCSHHH------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHH
Confidence            6654311                  1455666677889999999999999999999986      458889999999999


Q ss_pred             HHHHHHH
Q 045410          193 VALVVAL  199 (589)
Q Consensus       193 ~g~~~~~  199 (589)
                      +|..+||
T Consensus       346 ~~~~igP  352 (352)
T PF07690_consen  346 LGGIIGP  352 (352)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHCC
Confidence            9999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.75  E-value=8.9e-07  Score=88.86  Aligned_cols=160  Identities=13%  Similarity=0.081  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ..|.+..--=+.++.+|.+..|+|.++. +.|+|..++|++++...+......+..-++++|.-.+|+..+....++.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3455555555678889999999999997 679999999999999999999999999999997656777777778888889


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      ...+.+.+                    .+...+.  .+++|+|.|..+|....++.+-.++.     ++-++..++-+.
T Consensus       288 ~~G~~~~P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a-----~~Aa~LSgmaQg  340 (395)
T COG2807         288 LVGLLLAP--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDA-----AIAAALSGMAQG  340 (395)
T ss_pred             HHHHHHhh--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCCh-----HHHHHHHHHhhh
Confidence            88888755                    1222233  47899999999999999999976542     233344455444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-hhHhHHH
Q 045410          190 SFTVALVVALTAVVYIQTNVS-WILGFAI  217 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g-~~~~f~~  217 (589)
                      ...+=+.+||.+.|++.|..| |+.....
T Consensus       341 ~GYllAa~GP~l~G~lhDa~gsw~~~~~~  369 (395)
T COG2807         341 VGYLLAAFGPWLFGFLHDATGSWSAPLVL  369 (395)
T ss_pred             hhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence            555666789999999999775 8766554

>PRK09669 putative symporter YagG; Provisional

Probab=98.71  E-value=3e-07  Score=98.98  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      .+.++...++...+.. +...+..|+.+..--++...+.+.....+...++.++.++++|| +|+|+.+..+.++..++.
T Consensus       231 ~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        231 WRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence            3334444444434432 22334444433322233344455556667777888999999999 599999998887666544


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC-cchhhhhHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK-GKSQLESFFNWWYF  189 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~  189 (589)
                      ....+..  +                 .+.+.+++..++.|++.+...+..+++++|..+.++.+ +++..+..++.+.+
T Consensus       309 ~~~~~~~--~-----------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~  369 (444)
T PRK09669        309 ALIFFIP--P-----------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLF  369 (444)
T ss_pred             HHHHHhC--c-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHH
Confidence            4333321  1                 25666777788899999999999999999998754322 23345567788888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcch
Q 045410          190 SFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       190 ~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      ...+|..+|+.++|++.+..|+
T Consensus       370 ~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        370 AIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999887666

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.71  E-value=4.7e-07  Score=96.37  Aligned_cols=163  Identities=11%  Similarity=-0.060  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTK-YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      ..+......|+......+..++++.|+.+. .+.+....+...+.+.....++.+++|+++|| +++||++.++.++..+
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence            334444455555555556778889998653 25555666667777888899999999999999 5999999888888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      ..++..+..                     + .......++.|+..+.++|...++..+..+++.       ....+...
T Consensus       312 ~~ll~~~~~---------------------~-~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~  362 (410)
T TIGR00885       312 LCLGSIFAG---------------------G-HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLV  362 (410)
T ss_pred             HHHHHHHcC---------------------C-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHH
Confidence            777777644                     1 123455667888889999999999999887532       11122222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc------chhHhHHHHHHHHH
Q 045410          189 FSFTVALVVALTAVVYIQTNV------SWILGFAIPTGCFF  223 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~------g~~~~f~~~~~~~~  223 (589)
                      + ..+|+.+.|.+.|++.|..      +.+..|+++..+.+
T Consensus       363 ~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       363 M-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             H-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            2 3489999999999999954      47788887665544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=5.3e-07  Score=95.85  Aligned_cols=188  Identities=12%  Similarity=0.014  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      ..+..+.+.+...++--....+....+-++-|++..++.++.........++.+++.++.|| +|||+.++.+..++.+.
T Consensus       270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHH
Confidence            34555556666655544445555666666889999999999999999999999999999999 59999999999998888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhh-ccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGS-GGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      .+++.....+....            ...-.+..+++.++..+.. -+..|..+-+.+|++|++      .|..++++-+
T Consensus       349 ~~~~~~~~~l~~~~------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~------~R~aa~s~~~  410 (485)
T KOG0569|consen  349 LLLMSIALFLSNSF------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS------ARSAAQSVAT  410 (485)
T ss_pred             HHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc------chHHHHHHHH
Confidence            77776543111100            0001112334443333222 234688899999999984      4677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccc
Q 045410          189 FSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYI  237 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~  237 (589)
                      ....+..++-.+.-..+.+.+|- +.|.+-.+...+..+..+...|+.+
T Consensus       411 ~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  411 AVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            77777777666666677776665 3444433333344444444445443

>PRK11043 putative transporter; Provisional

Probab=98.69  E-value=1.5e-06  Score=92.10  Aligned_cols=146  Identities=10%  Similarity=-0.054  Sum_probs=104.1

Q ss_pred             HHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 045410           39 TFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTAS  118 (589)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s  118 (589)
                      .+....++....+++.|+. ++|++..+.++......++..++.++++++.|| +|+|+.+....+...++.+.+.....
T Consensus       213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASL  290 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566677777775 589999999998888888899999999999999 59999887776665555444333220


Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 045410          119 IPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVA  198 (589)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  198 (589)
                      .+.                .+.+.++.+..+.+++.+...+...+...|..|+       .+++..++++.....++..+
T Consensus       291 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~  347 (401)
T PRK11043        291 LSH----------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLA  347 (401)
T ss_pred             hcc----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHH
Confidence            110                1334455566778888888888888887777653       35667888877777788888


Q ss_pred             HHHHHHHHhhc
Q 045410          199 LTAVVYIQTNV  209 (589)
Q Consensus       199 ~~~~~~l~~~~  209 (589)
                      +.+.+.+.+..
T Consensus       348 ~~~~g~l~~~~  358 (401)
T PRK11043        348 SLLVSALISTP  358 (401)
T ss_pred             HHHHHHccCCC
Confidence            88888887643

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.68  E-value=2.3e-07  Score=100.60  Aligned_cols=176  Identities=16%  Similarity=0.128  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc--chHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG--RFRTLLYGSIAS  106 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~l~~~~~~~  106 (589)
                      +..+....-..+..++++.-...++.|.. ..|++..+...+.++..+...++.++.|+++|+. .  ++.+..++.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            34455556777777888877788888887 8999999999999999999999999999999995 7  344445555555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++...+.+..                     +++.++..-++.|+..|...+.....+.|+.+.+      ....++++
T Consensus       376 gl~~~~~p~~~---------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl  428 (509)
T KOG2504|consen  376 GLARLFLPFAT---------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGL  428 (509)
T ss_pred             HHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHH
Confidence            55555666655                     5677888888999999999888888999998874      35667899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhh
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGY  233 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~  233 (589)
                      ......++.++||.++|++.|..+ |...|+.+++..+++..+.++..
T Consensus       429 ~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  429 LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            888999999999999999998887 99999998888877776655544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.67  E-value=1.7e-06  Score=90.31  Aligned_cols=178  Identities=8%  Similarity=0.041  Sum_probs=137.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKY---NMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      .|+.|............|++.-.-.+.|.+..+   +.++...|.+.++..+.-.+...+..++.+| +|.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHH
Confidence            445555554444444454544445677776433   4566778999999999999999999999999 699999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++++=...+++++                     +++.+.+.+.+.++-.+.....+.-|+.+.+|+      +..++..
T Consensus       298 i~~iRi~~~~~~~---------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~------rlsAt~y  350 (412)
T PF01306_consen  298 IMAIRIIGSGFAT---------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK------RLSATLY  350 (412)
T ss_dssp             HHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHH
T ss_pred             HHHHHHHHHhhhc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------hHHHHHH
Confidence            9999988889887                     788899999999999999999999999999986      3445666


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhh
Q 045410          185 NW-WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGY  233 (589)
Q Consensus       185 ~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~  233 (589)
                      .+ +..+..+|.++.+.++|.+-|++|++-.|++.+.++++..++..+..
T Consensus       351 ~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  351 LVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            66 45678899999999999999999999899887766655555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=4.3e-05  Score=80.75  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 045410           70 VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLAL  149 (589)
Q Consensus        70 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  149 (589)
                      -.++.+....+..++++.+.|+ +|.|..++++...+.+-.+.+.+-                      |.+.++.+-++
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~----------------------N~y~~yfssal  111 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP----------------------NSYYLYFSSAL  111 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc----------------------chHHHHHHHHH
Confidence            3788888999999999999999 599999999999888877666653                      44678888899


Q ss_pred             HHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 045410          150 LAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTA  201 (589)
Q Consensus       150 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  201 (589)
                      .|+|.+....-...++.|..++      +.+.+-.++.+.....+.++|.+.
T Consensus       112 lG~Gaallw~GqG~ylt~~st~------~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  112 LGFGAALLWTGQGGYLTSNSTR------ETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hhhhHHheecccceehhhcCCh------hhHHHHHHHHHHHHHHHHHhhhHh
Confidence            9999998888888888886554      234444555545555566555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.61  E-value=7.1e-07  Score=89.22  Aligned_cols=143  Identities=8%  Similarity=-0.054  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHh-----------------c---CCchhHHHHHHHHHHHHHHhhhhhhhHHhh
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTK-----------------Y---NMDGILLVNVVSIWGGSSSLTAIPGALLSD   90 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----------------l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD   90 (589)
                      .+.+-.+-|...++||++.-..+...+..                 .   ..+....-. .-+..+.-.-+.++.+++.|
T Consensus       328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd-llitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD-LLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH-HHHHHHhhCCchhHHHHHHH
Confidence            34455688889999999876554433211                 0   112222222 23345567788999999999


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCC
Q 045410           91 TYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFD  170 (589)
Q Consensus        91 r~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~  170 (589)
                      | +|||+.+..+.+++++..+.+....+-                 .....++..+|++...    .+.+.+.|-.|.||
T Consensus       407 r-lGRKkTMal~l~~f~iflfll~~c~~r-----------------n~~tvllf~arafisg----~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  407 R-LGRKKTMALSLILFGIFLFLLTTCKTR-----------------NAYTVLLFTARAFISG----AFQVAYVYTPEVYP  464 (528)
T ss_pred             H-hcchhHHHHHHHHHHHHHHHHHHhcCc-----------------chhHHHHHHHHHHHhc----hheEEEEecCcccc
Confidence            9 699999999999999988888776511                 1123455666666544    44566889999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 045410          171 TTTPKGKSQLESFFNWWYFSFTVALVVALTAV  202 (589)
Q Consensus       171 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  202 (589)
                      +      ..|+.+.+....+..+|+++.|.++
T Consensus       465 T------avRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  465 T------AVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             h------hhhhcchhhhhhHHhhhhhhhhHHH
Confidence            8      5688888888888999999999887

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.60  E-value=3.5e-06  Score=88.51  Aligned_cols=138  Identities=12%  Similarity=0.191  Sum_probs=101.1

Q ss_pred             cccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhH
Q 045410          377 GWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISIL  456 (589)
Q Consensus       377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (589)
                      +.+..++-.+-++.-++..+    +.+|++       +.+.+..|+.+.++=++.+.+++                 ++|
T Consensus       409 Gv~~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~-----------------n~W  460 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ-----------------NPW  460 (618)
T ss_pred             eehhhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc-----------------Cch
Confidence            34444554454555455444    477764       34478888888888888888875                 677


Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcc
Q 045410          457 VLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSL-SISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKD  535 (589)
Q Consensus       457 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~  535 (589)
                      .+++.-++.++-......+.-+|+...+|++.|.+++++..... ++|-.+|..++|.+....+                
T Consensus       461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------  524 (618)
T KOG3762|consen  461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------  524 (618)
T ss_pred             heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------
Confidence            88889999999999999999999999999999999999886555 7888888888887765321                


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          536 TLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       536 ~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                       ....|..+++.+++.++++..+-
T Consensus       525 -~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  525 -ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhh
Confidence             12456666666666666665553

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.55  E-value=5.4e-06  Score=87.53  Aligned_cols=158  Identities=8%  Similarity=0.002  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      +...+...++...+.-....+...|+++.-|.+....+.+.++..+.-.....+.+++..| +|.|++++++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence            3333344455555545556788889875544888888888888888888889999999999 599999999999988877


Q ss_pred             HHHHHh-hcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH
Q 045410          111 GIMTLT-ASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF  189 (589)
Q Consensus       111 ~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  189 (589)
                      .+++.. ++.+                 ......+.+.+++|+..+....+...++.+..|++      .|+++-++++.
T Consensus       288 ~l~a~~~~~~~-----------------~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~  344 (400)
T PF03825_consen  288 LLYAYFSDPWP-----------------FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSA  344 (400)
T ss_pred             HHHHHhcCCcH-----------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHH
Confidence            777775 3100                 01122333456799999999999999999999973      46677777665


Q ss_pred             H-HHHHHHHHHHHHHHHHhhcchh
Q 045410          190 S-FTVALVVALTAVVYIQTNVSWI  212 (589)
Q Consensus       190 ~-~~~g~~~~~~~~~~l~~~~g~~  212 (589)
                      . ..+|..+|..++|++.+++|-+
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcch
Confidence            4 5689999999999999987644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.53  E-value=7.8e-07  Score=92.77  Aligned_cols=139  Identities=15%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGM  110 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~  110 (589)
                      .+......++.....+++..+++.|+++.+|+++.+.+.+.++..+...++.+++|+++|| +|||+.+..+.++..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHH
Confidence            3444445555556667788889999999999999999999999999999999999999999 599998888877777766


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHH
Q 045410          111 GIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFS  190 (589)
Q Consensus       111 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  190 (589)
                      .++.+....+                 .+.+.++....+.+++.|...+...++.++.+|.       .+++.+++.+..
T Consensus       306 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~  361 (366)
T TIGR00886       306 FLVVLGLVSP-----------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-------ATGAVSGLVGAI  361 (366)
T ss_pred             HHHHhcCCCc-----------------chHHHHHHHHHHHHHHhccccchhhhcchhhchh-------hcccHHHHHHHh
Confidence            6665533100                 0344455555666666777777788888888763       355677776665


Q ss_pred             HHHH
Q 045410          191 FTVA  194 (589)
Q Consensus       191 ~~~g  194 (589)
                      .++|
T Consensus       362 ~~~g  365 (366)
T TIGR00886       362 GNLG  365 (366)
T ss_pred             ccCC
Confidence            5554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.50  E-value=4.7e-06  Score=73.27  Aligned_cols=132  Identities=15%  Similarity=0.252  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHH
Q 045410          383 SMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQF  462 (589)
Q Consensus       383 ~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  462 (589)
                      ..++.++..++.+++    .||.++|       +.+..+..+..++.+......                 +.+......
T Consensus         7 ~~~~~~~~~~~~g~~----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~   58 (141)
T TIGR00880         7 YALGQLIYSPLSGLL----TDRFGRK-------PVLLVGLFIFVLSTAMFALSS-----------------NITVLIIAR   58 (141)
T ss_pred             ehhHHHHHHhhHHHH----Hhhcchh-------HHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHH
Confidence            344555666665555    5665443       356667667776666555432                 344555667


Q ss_pred             HHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHH
Q 045410          463 SFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYF  542 (589)
Q Consensus       463 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~  542 (589)
                      .+.+++.+...+..+.+..|..|++.|+++.++.++...++..+++.+.+.+.+..      +           +.+.|.
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~-----------~~~~~~  121 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------G-----------WRAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------c-----------hHHHHH
Confidence            88888888888999999999999999999999999999999999999998876421      1           234566


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 045410          543 TIAALEVVNLLYFNFFA  559 (589)
Q Consensus       543 ~~a~~~~~~~~~~~~~~  559 (589)
                      +.+.+.++..+..++..
T Consensus       122 ~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       122 FLAILALAAFILLAFLL  138 (141)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            66666666665555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.45  E-value=1.3e-05  Score=84.64  Aligned_cols=138  Identities=10%  Similarity=-0.010  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           48 LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        48 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      .....+.|+.+.+|.+..+.+++......+..++.++.+++.||+ ||+...  +.+...++.+.........       
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------  295 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------  295 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc-------
Confidence            344556788877999999999998888888888999999999995 743332  2222222222221111000       


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                               ..+.+.+..+.++.+++.+...|...++..|.+|+       .++...++++...++|..+++.+++.+.+
T Consensus       296 ---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        296 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                     01345677778889999999999999999998763       24566778877889999999988888766


Q ss_pred             hcch
Q 045410          208 NVSW  211 (589)
Q Consensus       208 ~~g~  211 (589)
                      ...+
T Consensus       360 ~~~~  363 (394)
T PRK11652        360 TGQF  363 (394)
T ss_pred             CchH
Confidence            5333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.44  E-value=1.3e-05  Score=85.39  Aligned_cols=138  Identities=10%  Similarity=0.066  Sum_probs=97.9

Q ss_pred             chhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHH
Q 045410          380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLV  459 (589)
Q Consensus       380 ~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  459 (589)
                      ..+..++..++.+..+.    +.||+++|       +.+..+.++.+++.++..+.+                 +.+.++
T Consensus        57 ~s~~~~~~~~~~~~~G~----l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a~-----------------~~~~l~  108 (413)
T PRK15403         57 VSLYLAGGMALQWLLGP----LSDRIGRR-------PVLITGALIFTLACAATLFTT-----------------SMTQFL  108 (413)
T ss_pred             HHHHHHHHHHHHHhhhH----HHHHcCch-------HHHHHHHHHHHHHHHHHHHcC-----------------CHHHHH
Confidence            33444455555555444    47777665       367778888888777776542                 555667


Q ss_pred             HHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHH
Q 045410          460 PQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDY  539 (589)
Q Consensus       460 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~  539 (589)
                      ...++.|++.+...+..+.+..|.+|++.+++++++.+....++..+++.+++.+.+..      +           ..+
T Consensus       109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------g-----------w~~  171 (413)
T PRK15403        109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------H-----------WKV  171 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-----------HHH
Confidence            77888899887767777788889999999999999999999999999998888765421      2           345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Q 045410          540 FYFTIAALEVVNLLYFNFFACRF  562 (589)
Q Consensus       540 ~f~~~a~~~~~~~~~~~~~~~~~  562 (589)
                      .|++.+++.++..++.++..++.
T Consensus       172 ~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        172 LFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC
Confidence            67777777676665545444554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.44  E-value=6.5e-06  Score=89.35  Aligned_cols=187  Identities=7%  Similarity=-0.043  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHHhhhhhhh----HHhhhcccchHHH--
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGIL----LVNVVSIWGGSSSLTAIPGA----LLSDTYLGRFRTL--   99 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~l--   99 (589)
                      ....++....+....+.-..+.++.|..++.+.+...    .+++.++-.+...+.+++..    ++.||..+.+...  
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            3343444555555666666677888887665544222    66777777777777777755    4555421334444  


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchh
Q 045410          100 LYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQ  179 (589)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (589)
                      .+|.++.+++...++++.....  +          ....+++++++..++.++|+....|...+++.+..|+      +.
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~--~----------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------~~  414 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFAD--A----------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------RL  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC--C----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH------HH
Confidence            6788888888877765421100  0          0123788899999999999999999999999999987      56


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          180 LESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      |++.+++++....+|..+++.+.....+..+|...|...++..++..+++++..|
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999888877766667777776666655555555544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.1e-05  Score=85.21  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=123.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|++...+...++...++.-..+.+..|.+-.+|.++...............++.++..++++| +|+|+++.++.++.+
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~  313 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLA  313 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHH
Confidence            3444444444555555544444555566665688888888888888888888999999999999 599999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCc-chhhhhHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKG-KSQLESFFNW  186 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~  186 (589)
                      ++.+++.+..                   ..+.+++++..++.++|.+...+..+++++|..+.++-+. .+.-+..++.
T Consensus       314 i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~  374 (467)
T COG2211         314 VGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG  374 (467)
T ss_pred             HHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence            9999999865                   1267788888899999999999999999999887543322 1122344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcch
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      +.+..=+|..++..+.|++....|+
T Consensus       375 ~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         375 MTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6667778888888888888765554

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=1.3e-05  Score=86.76  Aligned_cols=162  Identities=10%  Similarity=0.031  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |.+..++...++..+...........|.+-.+|. +...+.+...+.+...++.+++++++|| +|+|+++..+.++..+
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAV  305 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence            3333333334444444333333333333222443 3445567777888888999999999999 5999988766555444


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCC-cchhhhhHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPK-GKSQLESFFNWW  187 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~  187 (589)
                      ...+..+..   .                .+...+++..++.|++.+...+...++++|..+.++-+ +++.-+..++.+
T Consensus       306 ~~~~~~~~~---~----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~  366 (460)
T PRK11462        306 ISLAMFFVP---M----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGT  366 (460)
T ss_pred             HHHHHHHhc---h----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHH
Confidence            444333322   1                12233444455667777777777788899877644221 122233445667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcch
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSW  211 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~  211 (589)
                      .+...+|..+++.++|++.+..|+
T Consensus       367 ~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        367 LFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            778899999999998888765554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.40  E-value=9.9e-06  Score=82.65  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=121.9

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|....-.+..|+.--.=-.+-++++.|+.+..|++..+.....+.+..+.+++..++-++-.| +...|.+.+..+...
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~i  313 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAI  313 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence            3444444455666555555667889999998899999999999999999999999999999999 599999998887766


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +-++..++..                     + ..-+.+.++.|+..+.++|.+.++..+..|++.+..        +..
T Consensus       314 ll~~~~~l~~---------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~--------s~~  363 (422)
T COG0738         314 LLLLAVALIG---------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVG--------SGL  363 (422)
T ss_pred             HHHHHHHHhc---------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccccc--------cee
Confidence            6666666655                     2 223444577899999999999999999998653221        111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHH
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFA  216 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  216 (589)
                      -.+..+|+.+.|.+-|++.|..|-...+.
T Consensus       364 l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         364 LVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            22456788899999999999998777665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.40  E-value=3.3e-05  Score=74.09  Aligned_cols=151  Identities=20%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 045410           54 VYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCP  133 (589)
Q Consensus        54 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  133 (589)
                      .|+-+++|+...+++.+.-......+++..+.|-|+|+ -||||..+..++    .+.++....-.|             
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtyci----tYiLsCiTKhSp-------------  122 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCI----TYILSCITKHSP-------------  122 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehH----HHHHHHHhhcCC-------------
Confidence            45667899999999999888888888999999999999 599998665554    444444443222             


Q ss_pred             CCCchhHHHHHHHHHHHHHhhccccccHHHH-hhccCCCCCCCcc-hhh-hhHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 045410          134 QPEGWQLSILYAGLALLAIGSGGIRPCNIAF-GADQFDTTTPKGK-SQL-ESFFNW-WYFSFTVALVVALTAVVYIQTNV  209 (589)
Q Consensus       134 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~-~~r-~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~  209 (589)
                           ++-.++++|++-|++.+..++..-+. ++|-..   +++- .+- ..-++= ....+.+-++++...+..+.+.+
T Consensus       123 -----qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne---kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  123 -----QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE---KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             -----ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh---ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence                 45568999999999988877665553 333221   1111 110 000111 11123334445555556666655


Q ss_pred             c--hhHhHHHHHHHHHHHHHHHH
Q 045410          210 S--WILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       210 g--~~~~f~~~~~~~~i~~~~~~  230 (589)
                      +  .-.+|-.++++..++..+.+
T Consensus       195 slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  195 SLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHH
Confidence            4  55677766666665555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.39  E-value=1.6e-05  Score=77.69  Aligned_cols=159  Identities=14%  Similarity=0.176  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 045410           49 IANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCT  128 (589)
Q Consensus        49 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  128 (589)
                      .+...+.+++.+|+|.+|...+.....++..++ ++.|.+.|++ |.|.++.+|.+...+|+.++.++.+ ..+      
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~-~~i------   91 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS-GRI------   91 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh-Ccc------
Confidence            455677888999999999999999999999875 8889999995 9999999999999999999887641 110      


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 045410          129 GAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV-ALVVALTAVVYIQT  207 (589)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~  207 (589)
                             .....|.+.+...+.+.+.+.+.........+.||.+       |++..++.-....+ |+++..+...+..+
T Consensus        92 -------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   92 -------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             -------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence                   0124566666666777777777677777777899853       44455552222222 33344333333333


Q ss_pred             hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          208 NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      + .-...+.++.....++++..++
T Consensus       158 ~-~~~fll~la~~~~~v~l~~~~~  180 (250)
T PF06813_consen  158 D-PSSFLLFLAVLPAVVCLVAMFF  180 (250)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHhhh
Confidence            1 2233444444444444444444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.34  E-value=9.6e-06  Score=86.99  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccc-------hHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGR-------FRTLLY  101 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-------r~~l~~  101 (589)
                      +.+|.+....+++..+++.+..++|.|+.+.+|++..+.|++.++..+...+..+++|.++||. -+       ++-+.-
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence            3557788899999999999999999999999999999999999999999999999999999995 43       111111


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410          102 GSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEG-WQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL  180 (589)
Q Consensus       102 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  180 (589)
                      +......+..+..++. ++..             +. .....+.++..+.|+..++.    ..-..|..|.       --
T Consensus       337 ~i~~~~~ai~l~~l~~-~~~~-------------~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~apq-------~a  391 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAF-TSDE-------------HRLLAVILLTIAIGLSGFNISGF----YKNHQDIAPQ-------HA  391 (466)
T ss_pred             hHHHHHHHHHHHeeee-cCCC-------------cchHHHHHHHHHHHHcccchhhh----Hhhhhhccch-------HH
Confidence            1122222222222221 2210             00 01111111112222222221    1212222332       24


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHhHHHHHHHHHHHHHHHHH
Q 045410          181 ESFFNWWYFSFTVALVVALTAVVYIQTN---VSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      +..+++.+...++.++++|.+.+.+.++   -.|+..|++.+++.++..+++.+
T Consensus       392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            4678888889999999999999999842   36999999988877777655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.32  E-value=6.7e-07  Score=92.37  Aligned_cols=145  Identities=16%  Similarity=0.292  Sum_probs=113.8

Q ss_pred             ccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchh
Q 045410          376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISI  455 (589)
Q Consensus       376 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  455 (589)
                      .+.++.+-.+...++.|+++.+    .+|+.||       ..+.+|.++-.++.+..++..                 +.
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyL----adryNR~-------~v~~vG~~iW~~Av~~~~fs~-----------------~F  121 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYL----ADRYNRK-------RVIAVGIFIWTLAVFASGFSN-----------------HF  121 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHH----HhhcCcc-------eEEeeHHHHHHHHHHHHHHHH-----------------HH
Confidence            3445555666677788888887    6666444       378999999999999888864                 67


Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcc
Q 045410          456 LVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKD  535 (589)
Q Consensus       456 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~  535 (589)
                      |.+.+.-.+.|+|+....|..+.++.+.+|++.|+++.++++++...|+.+|...+..+.+.+.     .|         
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W---------  187 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW---------  187 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce---------
Confidence            7778889999999999999999999999999999999999999999998888777666654331     13         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410          536 TLDYFYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       536 ~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                        .+.|...+++.++..++..++.++..+
T Consensus       188 --r~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  188 --RWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             --EEEEEeehHHHHHHHHHHHhhccCccc
Confidence              245677788888888877777666543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.31  E-value=2.7e-05  Score=80.13  Aligned_cols=169  Identities=17%  Similarity=0.215  Sum_probs=132.9

Q ss_pred             HHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 045410           37 NETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLT  116 (589)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~  116 (589)
                      ..++..++++.-=..+-+|--+.||++..|.+-+......+..++....|++..|..++++.-.+++....++.....++
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            44444455444446667787888999999999999999999999999999998865799999999999888888877776


Q ss_pred             hcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 045410          117 ASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALV  196 (589)
Q Consensus       117 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  196 (589)
                      ...                  .+.+.+..+.+++|++.|.+.....+.+-|+..+++      -+..++.|.....++..
T Consensus       296 ~~~------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~G  351 (403)
T PF03209_consen  296 GPL------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARG  351 (403)
T ss_pred             Hhc------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHH
Confidence            522                  257889999999999999999999999999887632      44678999999999999


Q ss_pred             HHHHHHHHHHhh----------cchhHhHHHHHHHHHHHHHHH
Q 045410          197 VALTAVVYIQTN----------VSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       197 ~~~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~~~~  229 (589)
                      +|..++|.+.|-          .+|..+|.+.+++.++++.+.
T Consensus       352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999888888763          245666777666655555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.31  E-value=4.3e-05  Score=76.12  Aligned_cols=146  Identities=17%  Similarity=0.263  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDG--ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      ..++.+. .+++.+.  .+.+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.+.+.+..+         
T Consensus        23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------   91 (338)
T COG0477          23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------   91 (338)
T ss_pred             HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3344443 3455555  5899999999999999999999999995 9999988888776666666666551         


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF-SFTVALVVALTAVVYIQ  206 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~  206 (589)
                                .+.+.+++.|+..|++.+...+...+++.|.+|+ .    ..|+...+.... ...+|..+++.+++.+.
T Consensus        92 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          92 ----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             ----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1467889999999999999999999999999885 1    346667777666 57788888887777766


Q ss_pred             hh--cchhHhHHHHHHH
Q 045410          207 TN--VSWILGFAIPTGC  221 (589)
Q Consensus       207 ~~--~g~~~~f~~~~~~  221 (589)
                      ..  .+|+..|.+....
T Consensus       157 ~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         157 GALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHhcchHHHHHHHHHH
Confidence            54  5688855554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.30  E-value=0.0016  Score=67.97  Aligned_cols=153  Identities=12%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             HHHHHHHHHh-cCCchhHHHH-HHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           50 ANMTVYLRTK-YNMDGILLVN-VVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        50 ~~l~~yl~~~-lg~s~~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      +++.+|+.+. .|++..|... +.-+..-.+....++...++|. +|.|++++++.+...+...++.+..          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~----------   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT----------   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence            6788999887 8999998874 4445555666778889999999 5999999999999888888888877          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +...+-+..+..|++.+. ..+..+++-...|+++      -.+..+....+.-+|-.++..++-.+..
T Consensus        93 -----------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   93 -----------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             -----------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       556677888888888766 3444555555555422      2234555555666666666655544443


Q ss_pred             --hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          208 --NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       208 --~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                        ..++....++......++++..++
T Consensus       155 ~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  155 FGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              234566666666555555554444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=3.2e-06  Score=85.74  Aligned_cols=160  Identities=14%  Similarity=0.060  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhccc--chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLG--RFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC  127 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~  127 (589)
                      +.++++..+....+..+.|...--..+.+.++..+.|.++||+ +  |...-..+.+...+.+....++.          
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~----------  359 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT----------  359 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh----------
Confidence            5577888888887777999998889999999999999999996 9  54444444444444444444544          


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          128 TGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                                 +...+++-++..+++.+...+...+.++.+.+....++.+..++.+++...+..+|..+||.++|.+.+
T Consensus       360 -----------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~  428 (464)
T KOG3764|consen  360 -----------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE  428 (464)
T ss_pred             -----------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee
Confidence                       556688888888899998888888888888875444433467888899999999999999999999999


Q ss_pred             hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          208 NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       208 ~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      .+|++|.-.+.+..-++..-++..
T Consensus       429 ~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  429 AIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999998777666655544433333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.19  E-value=0.0011  Score=69.09  Aligned_cols=61  Identities=20%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          454 SILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNII  514 (589)
Q Consensus       454 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  514 (589)
                      +.|.+++.+...|+-.+..+...+..+.+..|++.|-.++|.......+|..+++.++-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555666777788888888888888889999999999999998888888888887766444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.18  E-value=0.016  Score=62.11  Aligned_cols=168  Identities=8%  Similarity=0.010  Sum_probs=104.9

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHhh-hhhhhHHhhhcccchHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMD-----GILLVNVVSIWGGSSSLT-AIPGALLSDTYLGRFRTLL  100 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~l~  100 (589)
                      -+|.++.....-|+-.+.||.+.+     +.|.++++     .....++-+...+-..+. .++-+++++|+ +|++.+-
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~   78 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY   78 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence            456667677788888888776665     67777663     356777777665655555 88899999995 9999998


Q ss_pred             HHHHHHHHHHHHHHHhh-cCCC-CCCCCCCCC-C---CCCCCc----hhHHHHHHHHHHHHHhhccccc-cHHHHhhccC
Q 045410          101 YGSIASFLGMGIMTLTA-SIPK-LRPPDCTGA-Q---CPQPEG----WQLSILYAGLALLAIGSGGIRP-CNIAFGADQF  169 (589)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-s~~~-~~~~~~~~~-~---~~~~~~----~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~  169 (589)
                      +....+....+++++.- ..++ +.++...++ .   +.+-..    .+.|..-+.-+...+-.....+ ..++++.|.+
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88887777777666542 0111 111100000 0   000000    0112111222223333334444 6789999998


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          170 DTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQ  206 (589)
Q Consensus       170 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  206 (589)
                      ..+      +-.|.+++++.+.|+|.++++.+..++.
T Consensus       159 t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 TID------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            763      3446899999999999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.13  E-value=5.4e-05  Score=82.38  Aligned_cols=101  Identities=16%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             HHHHhhhhHHHHhhhh-hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHH
Q 045410          389 TWIFFYERVFVPLSQK-MTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGL  467 (589)
Q Consensus       389 ~~~~l~~~~~~~~~~k-~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~  467 (589)
                      ...++.+++    .|| +++|       +.+.+|.++..++.+.+++..               . ....++....+.++
T Consensus        65 ~~~~~~G~l----aDr~~G~r-------~~~~~g~~~~~~g~~~~~~~~---------------~-~~~ll~~~~~l~~i  117 (489)
T PRK10207         65 GLISIGGYV----GDHLLGTK-------RTIVLGAIVLAIGYFMTGMSL---------------L-KPDLIFIALGTIAV  117 (489)
T ss_pred             HHHhhHHHh----hhhccchH-------HHHHHHHHHHHHHHHHHHHhc---------------c-chhHHHHHHHHHHh
Confidence            334454554    666 5444       488999999999988887643               1 12223456778899


Q ss_pred             HHHhHhhhHHHHHhhccCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045410          468 TEGFAAVAVMEFLTTQLPES--MRTVSGAVFFLSLSISSYINSALVNIIHG  516 (589)
Q Consensus       468 g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  516 (589)
                      |.++..|...+++.|.+|++  .|+.+.+.+.+..++|..+++.+.|.+.+
T Consensus       118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887  45788999999999999999999998864

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.09  E-value=2.1e-05  Score=62.06  Aligned_cols=69  Identities=19%  Similarity=0.177  Sum_probs=58.5

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      ...|+...+...+.++++.|+. +.|+|..|+|.+.++..+...+++++.|+++||+ ||++.++....++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            3455555666667788899987 5999999999999999999999999999999995 9999888776654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.08  E-value=0.00018  Score=77.43  Aligned_cols=202  Identities=13%  Similarity=-0.009  Sum_probs=138.7

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh-cCCchh------H----HHHHHHHHHHHHHhhhhhhhHHhhhcccc
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTK-YNMDGI------L----LVNVVSIWGGSSSLTAIPGALLSDTYLGR   95 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~~Gr   95 (589)
                      -+|.++.+..++|+.+++++.+..+.+.|..++ ++-++.      +    ..+....+.+...+..++--++.+| +|+
T Consensus       256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~  334 (477)
T TIGR01301       256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGA  334 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            367778888999999999999999999998753 443221      1    1233344444445666777888999 595


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCC
Q 045410           96 -FRTLLYGSIASFLGMGIMTLTASIPK-LRPPDCTGAQCP-QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTT  172 (589)
Q Consensus        96 -r~~l~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  172 (589)
                       |++..++.++..++.....+..+.++ ..+  .++++.+ .......+..++...+.|+..+....+-++++++..+++
T Consensus       335 ~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       335 GKRLWGIVNIILAICLAATVLVTYVAKNSRY--YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence             67778898888888888876543221 000  0011111 111122466777778899999999999999999988742


Q ss_pred             CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHhHHHHHHHHHHHHHHHHHhhcc
Q 045410          173 TPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS--WILGFAIPTGCFFLSIVVFLIGYHT  235 (589)
Q Consensus       173 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~i~~~~~~~~~~~  235 (589)
                      .    ++.+..+++++.++.+..++..+..|.+.+..|  -.+.+.++++..+++.+..++..|+
T Consensus       413 ~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       413 G----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             C----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            1    345678999999999999999988888666554  3457777888777777766666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.08  E-value=0.00018  Score=78.64  Aligned_cols=180  Identities=13%  Similarity=0.019  Sum_probs=114.0

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHH--hcCCch------hHHHHHHHHHHHHHHhhhhhh----hHHhhhcccchHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRT--KYNMDG------ILLVNVVSIWGGSSSLTAIPG----ALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~l~~~~  103 (589)
                      +..+.....+|.+..-++.++..  ..+.+.      ...+++.++-.+...+..++.    +++.|| ++.++.+.+|.
T Consensus       279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~  357 (500)
T PRK09584        279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGM  357 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHH
Confidence            34445555566666555555442  111111      124555555555555565555    666777 47778899999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      ++..++.+.++++...+.-            ....+.+++++..+++++|+++..|+..+++.+..|+      +.|++.
T Consensus       358 ~l~~l~f~~l~~~~~~~~~------------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~------~~rg~~  419 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFAND------------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ------RLMGFI  419 (500)
T ss_pred             HHHHHHHHHHHHHHHhcCC------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH------HHHHHH
Confidence            9999999888876532210            0112566788899999999999999999999999987      568889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----------hcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQT----------NVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      ++.+.....+|+.++..+.+....          ..++...|...++..++..++++...+
T Consensus       420 ~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        420 MGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887777777777665543221          112556665555444433333344333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.03  E-value=0.00017  Score=77.96  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=83.9

Q ss_pred             HHHHHHHhhhhHHHHhhhhh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHH
Q 045410          386 TLSTWIFFYERVFVPLSQKM-TGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSF  464 (589)
Q Consensus       386 ~~~~~~~l~~~~~~~~~~k~-~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  464 (589)
                      ...+..++.+++    .||+ ++|       +.+.+|.+++.++.++++...               . +...+.....+
T Consensus        57 ~~~l~~ligG~L----aDRilGrr-------r~iliG~il~~lg~lll~~~~---------------~-~~~~~~l~l~l  109 (493)
T PRK15462         57 LVYVTPILGGFL----ADKVLGNR-------MAVMLGALLMAIGHVVLGASE---------------I-HPSFLYLSLAI  109 (493)
T ss_pred             HHHHHHHHHHHH----HHHccCcH-------HHHHHHHHHHHHHHHHHHHhh---------------c-chhHHHHHHHH
Confidence            333444454555    6665 443       367888888888876554321               0 11123334445


Q ss_pred             HHHHHHhHhhhHHHHHhhccCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHH
Q 045410          465 SGLTEGFAAVAVMEFLTTQLPES--MRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYF  542 (589)
Q Consensus       465 ~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~  542 (589)
                      ..+|.++..+...+++.|.+|++  .|.++.+++++..++|+.+++.+.+.+.+..      +           +.+.|.
T Consensus       110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------G-----------w~~~F~  172 (493)
T PRK15462        110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------S-----------WAMGFG  172 (493)
T ss_pred             HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------C-----------hHHHHH
Confidence            55666666777788999999976  7999999999999999999999999886422      2           345676


Q ss_pred             HHHHHHHHHHHHHHHH
Q 045410          543 TIAALEVVNLLYFNFF  558 (589)
Q Consensus       543 ~~a~~~~~~~~~~~~~  558 (589)
                      +.++..+++++.++..
T Consensus       173 iaaigm~l~li~~~~~  188 (493)
T PRK15462        173 LAAVGMIAGLVIFLCG  188 (493)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6655555555554443

>PTZ00207 hypothetical protein; Provisional

Probab=98.02  E-value=0.00035  Score=76.86  Aligned_cols=125  Identities=11%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             HHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHH
Q 045410          399 VPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVME  478 (589)
Q Consensus       399 ~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~  478 (589)
                      .++.+|+++|       +.+.+|.++..++.++.++...           .....+.+.+.+...+.|+|.++..+....
T Consensus        82 G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~-----------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~  143 (591)
T PTZ00207         82 SFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ-----------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVV  143 (591)
T ss_pred             HHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc-----------ccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4447776544       4888999999999988887521           000135666677788899999888888888


Q ss_pred             HHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 045410          479 FLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       479 ~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                      ...+.+| +.||.+.|+..+...+|+++.+.+...+...       +           ...+|++.+++.++..++.+.+
T Consensus       144 ~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~-----------~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        144 TVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-------N-----------TSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence            8888887 6699999999999999998755555433320       1           2345666666666665555555


Q ss_pred             hc
Q 045410          559 AC  560 (589)
Q Consensus       559 ~~  560 (589)
                      .+
T Consensus       205 vr  206 (591)
T PTZ00207        205 MR  206 (591)
T ss_pred             ee
Confidence            43

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.00039  Score=72.17  Aligned_cols=170  Identities=15%  Similarity=0.059  Sum_probs=117.5

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHHHHHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRTLLYG  102 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~~~  102 (589)
                      ++.+.++.+..+.+...+++-.=.+++++|+. .+|++.+-.+.+-...-+...+.+|+.|..+||.   +||||.++..
T Consensus        29 s~~~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~  107 (498)
T KOG0637|consen   29 SRLRKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILA  107 (498)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHH
Confidence            34366666667777777776666788888885 8999999999888888889999999999999975   7999988877


Q ss_pred             HHH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhh
Q 045410          103 SIA-SFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLE  181 (589)
Q Consensus       103 ~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  181 (589)
                      ..+ ..++.++..++.-+..+..++...  +  .-.-....++++.-+.=++.-......-++++|+..++++++   | 
T Consensus       108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~--~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~-  179 (498)
T KOG0637|consen  108 GSLLIAVSLFLIGYAADIGLLLGDNERK--P--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R-  179 (498)
T ss_pred             hhHHHHHHHhhhhhHhhhhHHhcCCccc--c--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c-
Confidence            554 445555555544222211111000  0  001234556666667777777778888999999987654322   2 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          182 SFFNWWYFSFTVALVVALTAVVYI  205 (589)
Q Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~l  205 (589)
                       +.+++.....+|+++|...++++
T Consensus       180 -Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  180 -ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             -cchhHHHHHHhcceeeeeccccc
Confidence             67777778899999888776643

>TIGR00788 fbt folate/biopterin transporter

Probab=97.99  E-value=3.6e-05  Score=83.40  Aligned_cols=136  Identities=7%  Similarity=-0.218  Sum_probs=105.2

Q ss_pred             HHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 045410           57 RTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPE  136 (589)
Q Consensus        57 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  136 (589)
                      .+.+|+++.+.|.+.....++..++....+++.+| ++.|+++.++.++.+++.....+..+......           .
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-----------g  347 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-----------G  347 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc-----------C
Confidence            45799999999999999999999999999999999 59999999999988887766542210000000           0


Q ss_pred             chhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045410          137 GWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       137 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                      ..+.+.++..-++.+++.+........++.+..|++      .+++.++++....++|..+++.+++++.+..|
T Consensus       348 i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       348 ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            002233445567788888888888899999999874      35677899888899999999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.94  E-value=0.043  Score=58.25  Aligned_cols=186  Identities=13%  Similarity=0.014  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH----HH
Q 045410           32 KYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA----SF  107 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~----~~  107 (589)
                      +.+...-++.+.+.-..-...+.|+.+-+.-+.--.....-+-.+...++.+..|.+.||. .|.+++..+.+.    .+
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence            3344444444444444445566677655544444444444555567778888899999995 999998877553    22


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH-hhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAI-GSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      +.+.++....+.+....          .+....+.+++...+.+. ..=+....-.+.=-|+.+.=..+.+..+++.-+.
T Consensus        84 ~s~~~~~~l~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~  153 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSS----------QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNAT  153 (432)
T ss_pred             HHHHHHHHHHhCCcccc----------ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHH
Confidence            22222222221111000          001112222222222221 1111111111212233221111222344445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVV  228 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~  228 (589)
                      ..-.=.+--+++|++.|.+....+......+.+...++++.+
T Consensus       154 mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  154 MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            444556788999999999998888887766666666666555

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.93  E-value=5.7e-05  Score=76.40  Aligned_cols=112  Identities=12%  Similarity=0.143  Sum_probs=86.9

Q ss_pred             ccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchh
Q 045410          376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISI  455 (589)
Q Consensus       376 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  455 (589)
                      .+.++....+.-.+..+.++.+    .+|+|||+       .+.+|.+..+++.++.+...                 +.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~----SD~yGRkp-------vll~c~~~va~s~ll~~~S~-----------------~F  121 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCL----SDRYGRKP-------VLLACLIGVALSYLLWALSR-----------------NF  121 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhh----hhhhCchH-------HHHHHHHHHHHHHHHHHHHH-----------------HH
Confidence            4445555566666777777776    77777664       78888888888888877753                 34


Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045410          456 LVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHG  516 (589)
Q Consensus       456 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  516 (589)
                      ..++..-++.|+..+-..+. -+++.|.++++.|+.+++..+++.++|..+||.+++.+..
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            34444577888887776665 5899999999999999999999999999999999998764

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.89  E-value=0.00061  Score=72.16  Aligned_cols=103  Identities=12%  Similarity=0.054  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHH
Q 045410          384 MLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFS  463 (589)
Q Consensus       384 ~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  463 (589)
                      ..+..+.....+++    .+|++-|       +.+.++++..++..++.++..                 +...+.+.-+
T Consensus        72 ~ysYal~qIp~GlL----aDrlG~K-------~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~  123 (511)
T TIGR00806        72 PYSHLAVLVPVFLL----TDYLRYK-------PVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEV  123 (511)
T ss_pred             HHHHHHHHHHHHHH----HHHhCch-------HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence            33344444444444    6776444       478888888888888888764                 5677888999


Q ss_pred             HHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045410          464 FSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIH  515 (589)
Q Consensus       464 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~  515 (589)
                      +.|++++... +...++.+.+|++.|+++.|+++....+|.++++.+++.+.
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 99999999999999999999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.88  E-value=0.00012  Score=82.08  Aligned_cols=131  Identities=10%  Similarity=0.019  Sum_probs=93.7

Q ss_pred             ccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-hhhhh----------
Q 045410          376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR-RLSAL----------  444 (589)
Q Consensus       376 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~-~~~~~----------  444 (589)
                      .+++.....++..+..++++.+    .+|.+||       +.+.+|+++++++.+++++..... .+...          
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~----~~r~~r~-------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYF----GTKLHRP-------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHh----hcccCcc-------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            4555666667777777775555    6665444       378889999999999887764110 00000          


Q ss_pred             ---------c------------cCCCCc--cchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHH
Q 045410          445 ---------Q------------HGSFES--PISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLS  501 (589)
Q Consensus       445 ---------~------------~~~~~~--~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  501 (589)
                               .            .+....  ...+..++++-++.|+|.+...+....++.|.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                     0            000000  11344566788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 045410          502 ISSYINSALVNIIHGL  517 (589)
Q Consensus       502 lg~~l~~~l~~~i~~~  517 (589)
                      +|..+|+.+++.+.+.
T Consensus       219 iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQI  234 (633)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            9999999999887653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00012  Score=79.02  Aligned_cols=85  Identities=13%  Similarity=0.038  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhc---ccchHHHHHHHHHHH
Q 045410           31 IKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTY---LGRFRTLLYGSIASF  107 (589)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~~~~~~~~  107 (589)
                      +|...+..++.....|++..+++.|+++..|++..+++.+...+.++..++.+++|+++||.   +.+|..+.....++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            35566788888889999999999999986779999999999999999999999999999992   156666555555444


Q ss_pred             H-HHHHHHH
Q 045410          108 L-GMGIMTL  115 (589)
Q Consensus       108 ~-~~~~~~~  115 (589)
                      + |...+..
T Consensus       355 ~~g~~~l~~  363 (495)
T KOG2533|consen  355 IIGAISLLA  363 (495)
T ss_pred             HHHHHHHHh
Confidence            4 3344333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.76  E-value=0.00079  Score=73.91  Aligned_cols=149  Identities=12%  Similarity=0.059  Sum_probs=89.3

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSI  104 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~  104 (589)
                      +..+|......++..+..++-+-...+....+.+..|.+... .....+..+...++..++.++.|| +|||+.++.+.+
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHH
Confidence            345666665555555555554444444444455677776544 455555666777777888999999 599999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHH-HHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          105 ASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSI-LYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       105 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      .+.++.++++.......-..         .......+. +....+.......+..|+.+.+.+|.+|.      +.|+.+
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~------~~r~~~  432 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYP---------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL------RLRSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCC---------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH------hHHhhh
Confidence            99999998876531111000         000111222 22222333344445567777889999997      345566


Q ss_pred             HHHHHHH
Q 045410          184 FNWWYFS  190 (589)
Q Consensus       184 ~~~~~~~  190 (589)
                      .++....
T Consensus       433 ~s~~~~~  439 (513)
T KOG0254|consen  433 ASLAVAV  439 (513)
T ss_pred             HHHHHHH
Confidence            6653333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.76  E-value=1.5e-07  Score=101.49  Aligned_cols=185  Identities=17%  Similarity=0.133  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      +++...+.+..+..+..+....+...++.+..|.++.  -.......+...++.+++.++.|| +|||+.++.+.++.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc
Confidence            3444444455555454444555555666667777777  222233445566777788899999 5999999999988888


Q ss_pred             HHHHHH-HhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          109 GMGIMT-LTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALL-AIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       109 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      +.+.++ .....+...            +..+.. .++...+. .....+..+....+..|.||+      +.|+++.++
T Consensus       329 ~~~~~~~~~~~~~~~~------------~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt------~~R~~~~~~  389 (451)
T PF00083_consen  329 CSLILGIIFFLGVSSS------------SWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPT------KVRSTGIGL  389 (451)
T ss_pred             cccccccccccccccc------------cccccc-cceeeeeccccccccccccccccccccccc------ccccccccc
Confidence            777665 111011100            000111 11222222 222224456777888999998      457778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcc
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHT  235 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~  235 (589)
                      .+....+++++++.+...+.+..+-...|.+.+.+.++..++.++..|+
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            8788888888888887777776662334444444444444433343343

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.76  E-value=0.00011  Score=77.39  Aligned_cols=168  Identities=8%  Similarity=-0.060  Sum_probs=126.9

Q ss_pred             HHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 045410           36 GNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTL  115 (589)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~  115 (589)
                      ...++..++.-.+.+++--|+ +++|-.+.--|.....-..+-.+.-++.+++..| +|+-+++.+++....+=.+....
T Consensus       378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~  455 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSY  455 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHH
Confidence            445555555555556665555 4677666666766666667777888889999999 59999999998888877777777


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHH-HHHHH
Q 045410          116 TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYF-SFTVA  194 (589)
Q Consensus       116 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g  194 (589)
                      ..                     ++|+.+..-+++|+..+.+..++.+|+.+..|++.      +.++-++... .--+|
T Consensus       456 L~---------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG  508 (618)
T KOG3762|consen  456 LQ---------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLG  508 (618)
T ss_pred             hc---------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccC
Confidence            66                     88999999999999999999999999999999843      3344444222 34578


Q ss_pred             HHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          195 LVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       195 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      -.+|.+++|.+.+.+|-+..|.+.++..++.++.+...
T Consensus       509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            88888999999999998888888776666555554443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.67  E-value=8e-05  Score=77.13  Aligned_cols=179  Identities=14%  Similarity=0.060  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHH--------HHHHHHHHHHh-hhhhhhHHhhhcccchHHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVN--------VVSIWGGSSSL-TAIPGALLSDTYLGRFRTL   99 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------~~~~~~~~~~~-~~~~~G~laDr~~Grr~~l   99 (589)
                      +.++-....-|....++|+...+...-+ +..|+.+.+...        .-.+......+ +-.++.++.|+ +|||++.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence            3344444556666677777655544433 455655444433        11222223333 66777888999 6999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchh
Q 045410          100 LYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQ  179 (589)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  179 (589)
                      +.+.+++++..+.++...+.+.-                ....+...-+.+-+++-+..+....+-+|.||+      +.
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~~~~----------------~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa------rv  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQLEN----------------TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA------RV  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCcccccc----------------cCceeehHHHHHHHHhcCCCceeEEeehhhchH------HH
Confidence            99999999988888775531110                111122333445566666666777778899997      67


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hcchhHhHHHHHHHHHHHHHHHHH
Q 045410          180 LESFFNWWYFSFTVALVVALTAVVYIQT-----NVSWILGFAIPTGCFFLSIVVFLI  231 (589)
Q Consensus       180 r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~g~~~~f~~~~~~~~i~~~~~~~  231 (589)
                      |+++-++...+.=.|+++|.....++++     ..+.+..|++.+.+.++..++.++
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            8999999988999999999999999998     678888988877777666655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.64  E-value=0.0032  Score=69.17  Aligned_cols=137  Identities=15%  Similarity=0.346  Sum_probs=92.5

Q ss_pred             ccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchh
Q 045410          376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISI  455 (589)
Q Consensus       376 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  455 (589)
                      ..|+...+.+......|+++++    +|.+|||       ..+..|.++..++.++.+..+                 +.
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA~-----------------~~  131 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATAQ-----------------NM  131 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcCC-----------------cH
Confidence            4566666777777777776665    6666554       478889999999998887654                 45


Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcc
Q 045410          456 LVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKD  535 (589)
Q Consensus       456 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~  535 (589)
                      ..++.+.++.|+|.+..... ...+.|..|.+.|+.+.++...........++.+...+..      +..|         
T Consensus       132 ~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W---------  195 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW---------  195 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc---------
Confidence            56778889988887666544 4557899999999988887665554555555555544322      1145         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 045410          536 TLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       536 ~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                        .|.|++.+.+..+++++++++
T Consensus       196 --Rw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  196 --RWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             --chHHHHHHHHHHHHHHHHHHH
Confidence              356666666666666554444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.44  E-value=0.003  Score=67.27  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             cccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhH
Q 045410          377 GWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISIL  456 (589)
Q Consensus       377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (589)
                      +++-....++.++..+++++.    ..|.+      +..+-+..|.+++.++.+++..+...            .+...+
T Consensus        74 G~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~------------~~~~~y  131 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV------------PNGVKY  131 (488)
T ss_pred             hHHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc------------ccchHH
Confidence            344445667777777887666    55543      11234788999999999999666520            122567


Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcch
Q 045410          457 VLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDT  536 (589)
Q Consensus       457 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~  536 (589)
                      ++.++.++.|+|.+.... .=.|+++..-.+.|.++++.......+|..+||.+...+..+...+-  .+..  +...+-
T Consensus       132 ~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~--~i~~--~~~~n~  206 (488)
T KOG2325|consen  132 LMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF--MILP--GLIFNM  206 (488)
T ss_pred             HHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce--EEcC--cceEEe
Confidence            778899999998654433 34777777777778888888888888889999888877665432211  1111  122222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045410          537 LDYFYFTIAALEVVNLLYFNFFACRFV  563 (589)
Q Consensus       537 ~~~~f~~~a~~~~~~~~~~~~~~~~~~  563 (589)
                      |...=++.+.+.++.+++.++..+|..
T Consensus       207 YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  207 YTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHhheeecc
Confidence            333445566666666666666666643

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.36  E-value=0.002  Score=70.95  Aligned_cols=127  Identities=13%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             chhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHH
Q 045410          380 GLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLV  459 (589)
Q Consensus       380 ~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  459 (589)
                      ..+..++.+++..+++.    +.+|+|||+       .+..++++..++-+..++..                 +++..+
T Consensus       124 ~s~~~~G~~vG~~i~g~----lsD~~GRk~-------~~~~~~~~~~i~~~~~a~a~-----------------~~~~~~  175 (521)
T KOG0255|consen  124 QSLFFLGVLVGSLIFGP----LSDRFGRKP-------VLLVSLLLFIIFGILTAFAP-----------------NYWMFL  175 (521)
T ss_pred             HHHHHHHHHHHHhhhee----hHhhcccHH-------HHHHHHHHHHHHHHHHHHhC-----------------cHHHHH
Confidence            34445555555555444    477776663       77888888888887777754                 677778


Q ss_pred             HHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHH
Q 045410          460 PQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDY  539 (589)
Q Consensus       460 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~  539 (589)
                      +.-.+.|++........+.+..|..+++.|+.+..+ ......++.+++.....+..        +|           .+
T Consensus       176 ~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W-----------r~  235 (521)
T KOG0255|consen  176 IFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW-----------RW  235 (521)
T ss_pred             HHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-----------HH
Confidence            888999999999999999999999999999999999 77788888888888877764        44           34


Q ss_pred             HHHHHHHHHHHHHHH
Q 045410          540 FYFTIAALEVVNLLY  554 (589)
Q Consensus       540 ~f~~~a~~~~~~~~~  554 (589)
                      .+++.....++.+++
T Consensus       236 ~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  236 LFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666666555444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.18  E-value=0.016  Score=52.46  Aligned_cols=114  Identities=14%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHH
Q 045410           62 MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLS  141 (589)
Q Consensus        62 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  141 (589)
                      +++..-..-.++.+....+..++.+.+.++ +|.|+.+++|.+.+.+-...... .                     +.+
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-~---------------------~~~   90 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-P---------------------NSY   90 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-h---------------------hHH
Confidence            344445555677777788888999999999 69999999999887754444332 2                     557


Q ss_pred             HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVY  204 (589)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  204 (589)
                      .++.+-++.|++.+........++.+..++      +.+++-.+++....+.+.++|.++.-.
T Consensus        91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~------~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen   91 TLYPASALLGFGAALLWTAQGTYLTSYSTE------ETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHHHHHHhhhhHHhhHhhhHHHHHcCCH------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999886543      345556677666667777777655433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=97.15  E-value=0.052  Score=59.45  Aligned_cols=168  Identities=9%  Similarity=-0.085  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHH-HHHHHHHHHH-
Q 045410           34 ILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLY-GSIASFLGMG-  111 (589)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~-~~~~~~~~~~-  111 (589)
                      +..+.|+..++..+.-....-.+...+|-+..+.+.+++++.++..++..++|+++++. -|+...+- +..+....+. 
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~   97 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSAL   97 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555556666666667899999999999999999999999999987552 33322221 1111111111 


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHH
Q 045410          112 IMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSF  191 (589)
Q Consensus       112 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  191 (589)
                      +........                ......++...++.++..|+..|....+..+....       ..++..+-.|...
T Consensus        98 ll~~~~~~~----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-------~~g~~~g~ly~~n  154 (521)
T PRK03612         98 ILYAAFAFQ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ-------HLGHNVATVLAAD  154 (521)
T ss_pred             HHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------chhhhhhhhHhHH
Confidence            111111000                00112223334456777777777766665542211       1223456667788


Q ss_pred             HHHHHHHHHHHHHHHh-hcch-hHhHHHHHHHHHHH
Q 045410          192 TVALVVALTAVVYIQT-NVSW-ILGFAIPTGCFFLS  225 (589)
Q Consensus       192 ~~g~~~~~~~~~~l~~-~~g~-~~~f~~~~~~~~i~  225 (589)
                      ++|+++|.++.+++.- ..|- +..+.++.+..+++
T Consensus       155 tlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        155 YLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            9999999999887664 5664 44444443333333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.58  Score=48.05  Aligned_cols=61  Identities=8%  Similarity=0.036  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045410          457 VLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGL  517 (589)
Q Consensus       457 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~  517 (589)
                      .++..+.+.+......+...+++-++++++..-|+.|.+-|+..++|+-.-..++..+.|.
T Consensus       371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~  431 (510)
T KOG3574|consen  371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG  431 (510)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence            3445677778877778888899999999999999999999999999877777777666653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.85  E-value=0.0082  Score=47.92  Aligned_cols=67  Identities=15%  Similarity=0.006  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTA  117 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~  117 (589)
                      +.+-+.+.++.++|.++.+++.+..++++.++.+...++.++ ..+++.+..+.++..+..+.+++..
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446666778999999999999999999999999999999999 4889999999999999999999876

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.62  E-value=0.6  Score=52.61  Aligned_cols=315  Identities=11%  Similarity=-0.035  Sum_probs=179.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchh
Q 045410           60 YNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQ  139 (589)
Q Consensus        60 lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  139 (589)
                      .+...........++....++..+.....+|-..++-..+..-.+...+..+.+.+.. ++..            .....
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~------------~~~~~   81 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAI------------PSSGH   81 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccC------------ccccc
Confidence            3444556677888899999999999999999975555666666666666666666644 3220            00111


Q ss_pred             HHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH------
Q 045410          140 LSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWIL------  213 (589)
Q Consensus       140 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~------  213 (589)
                      .....+..+.+.++.++..++-+.+.++.....   .++.+.+..+.|++..+.+.+ |.+++..+.....-+.      
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccC
Confidence            234456777788999999999999999988643   355677899999999998885 4566666665443222      


Q ss_pred             -hHHHHHHH-HHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCC
Q 045410          214 -GFAIPTGC-FFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPH  291 (589)
Q Consensus       214 -~f~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (589)
                       .|.....+ +++.++.+......++..++.+.......++......                                 
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~---------------------------------  204 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVT---------------------------------  204 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHH---------------------------------
Confidence             23333333 3333333444333322222211111111111111000                                 


Q ss_pred             CcchhhhhhhhhhhcCCccccCCCCCCCcccch--hhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhccccc
Q 045410          292 TNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCS--LLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRF  369 (589)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (589)
                                +......  ..+...+..|.+..  ...+++.+...+.+.++...+.+++.+.++......+..+.+...
T Consensus       205 ----------a~~~~~~--~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~  272 (654)
T TIGR00926       205 ----------ALRKRFS--TRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD  272 (654)
T ss_pred             ----------HHHHhhc--cCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence                      0000000  00000112332221  112345677888888888888888877776667766666665543


Q ss_pred             CcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          370 GSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKR  439 (589)
Q Consensus       370 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~  439 (589)
                      +.+...+.....++.+-.++..++...+..++..++. |  ...++..+.-+.+.+.++.+.+++.....
T Consensus       273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~-~--~~~~ls~l~k~~iG~~la~la~~va~~ve  339 (654)
T TIGR00926       273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA-K--CGTRFTSLRKMAVGGLLAALSFFVAALVQ  339 (654)
T ss_pred             CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH-h--cCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223345566677777777776666566777662 1  11345567777777777777777665433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.50  E-value=0.16  Score=49.82  Aligned_cols=92  Identities=9%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHH
Q 045410          413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVS  492 (589)
Q Consensus       413 ~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~  492 (589)
                      ++...+.+|.+...++..++......          .-...+.|.+.....+.+.+..+.......-..+.+|. .||++
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~----------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v  132 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSG----------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV  132 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC----------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence            45557788988888888777665421          11124555666666666777777777776777799986 59999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 045410          493 GAVFFLSLSISSYINSALVNIIH  515 (589)
Q Consensus       493 ~g~~~~~~~lg~~l~~~l~~~i~  515 (589)
                      .|+.....++++++-+.+...+.
T Consensus       133 vgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHHHc
Confidence            99999999999999888877665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.31  E-value=0.044  Score=58.90  Aligned_cols=128  Identities=18%  Similarity=0.219  Sum_probs=105.5

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhh-HHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           51 NMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGA-LLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        51 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      .+..|+...+|++..+.+...+.......+++++.. .+.-. +|-|+.+..|+....+...+.+++.            
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------  329 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------  329 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence            446777788999999999999999999999999888 66666 6999999999999999999999988            


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                               +.|..+...++.++. +...|..-++.+.+..++      ++++.+++....-.+.++++|.+-+.+..
T Consensus       330 ---------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~------e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  330 ---------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPE------EQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             ---------cchhhhHHHHHHHhh-cchhHHHHhHHHhhcccc------cccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence                     667788887766665 666788888888887764      46677888888888888888888666643

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.11  E-value=0.054  Score=57.47  Aligned_cols=122  Identities=14%  Similarity=0.142  Sum_probs=90.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCch--hhH
Q 045410          413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPES--MRT  490 (589)
Q Consensus       413 ~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg  490 (589)
                      +.++.+..|.++++++.++++...               ..+...+.+..++.++|.+..-+....++.+++|++  .|-
T Consensus        90 G~~~tI~lGail~~iGh~~L~~~~---------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          90 GTRRTIVLGAILMAIGHLVLAISS---------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccc---------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence            444589999999999999888642               123445677888888999999999889999998765  255


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 045410          491 VSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSN  566 (589)
Q Consensus       491 ~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~  566 (589)
                      .+.+++.+.-++|+.+++.+.+.+.+..                 ++...|...++-..++++.++...+..++..
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~-----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINY-----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhh-----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence            5666777778899999999998886422                 2456777888778888777777765555433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.10  E-value=0.041  Score=57.54  Aligned_cols=128  Identities=14%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             hcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc
Q 045410           59 KYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRT-LLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEG  137 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  137 (589)
                      .-|.+...+|++.....++.+++++++|.++||. ...|- .++......++. ++.+..+..                .
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~-~~l~~~t~~----------------~  356 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGT-LMLLTCTLF----------------L  356 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHH-HHHHHhhcc----------------C
Confidence            4577888999999999999999999999999995 55444 333333333332 222211010                0


Q ss_pred             hhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045410          138 WQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVS  210 (589)
Q Consensus       138 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  210 (589)
                      ...+.++.--.+.|+......|.-.-+..|..-|..++.      ..++.+...++-+++-.+.-+...+..+
T Consensus       357 ~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~t------SsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  357 GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGT------SSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcc------cceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            122334444566777777788888888888543332222      2334334455555555555566666554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.76  E-value=0.054  Score=56.68  Aligned_cols=168  Identities=12%  Similarity=0.095  Sum_probs=107.6

Q ss_pred             HHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCC
Q 045410          332 KLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIR  411 (589)
Q Consensus       332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~  411 (589)
                      ++++..........+.|..--++.+.+..+ .+.+...      .+.+....++..++..|+.+...|+--.|++||++ 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------ccccccccccccceecccccccccccccccccccc-
Confidence            455555556666777777666555544322 2333322      44556667778888899999998888888887754 


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHH
Q 045410          412 LTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTV  491 (589)
Q Consensus       412 ~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~  491 (589)
                           .+..+....++++.++++.......-..+...+.-+-.....++.+.+.=+...+...++=++..+..-++.+.+
T Consensus       104 -----fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~  178 (498)
T KOG0637|consen  104 -----FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT  178 (498)
T ss_pred             -----hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence                 788888888899988888763322111111100111222223334444444554555666788999987777777


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Q 045410          492 -SGAVFFLSLSISSYINSALVN  512 (589)
Q Consensus       492 -~~g~~~~~~~lg~~l~~~l~~  512 (589)
                       +.+.+.+..++|+.+|-.+.+
T Consensus       179 ~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  179 RANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ccchhHHHHHHhcceeeeeccc
Confidence             999999999999998866654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.61  E-value=0.0025  Score=69.92  Aligned_cols=169  Identities=11%  Similarity=0.100  Sum_probs=2.9

Q ss_pred             cccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH----HHHhhhhh--------
Q 045410          377 GWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVE----RKRRLSAL--------  444 (589)
Q Consensus       377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~----~~~~~~~~--------  444 (589)
                      +.+...+-++.++...++..+    .+|.       ++++++.+|.++++++.+++.+.+    .+......        
T Consensus        41 G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            344444455555555554333    3332       455699999999999999988653    11101000        


Q ss_pred             ---cc----------------C--CCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHH
Q 045410          445 ---QH----------------G--SFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSIS  503 (589)
Q Consensus       445 ---~~----------------~--~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  503 (589)
                         ..                .  +.......+.++++.++.|+|..-.++...+|+-|.++++.-+.+.|+......+|
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG  189 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG  189 (539)
T ss_dssp             ------------------------------------------SSS-----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence               00                0  11112234556778899999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhhc----ccc--------ccCCCCCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHHHhccccc
Q 045410          504 SYINSALVNIIHGL----TKK--------YAKAPWLGGTDLNKDTLDY-FYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       504 ~~l~~~l~~~i~~~----~~~--------~~~~~w~~~~~~~~~~~~~-~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      -++|-.+++.....    ...        ..++.|.+        .-| -|.+.+.+.++..+.++.+-++..+
T Consensus       190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG--------AWWLGfli~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG--------AWWLGFLICGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHH--------HHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            88887777755432    211        11233433        112 2556666666666666666444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.24  E-value=0.12  Score=57.74  Aligned_cols=170  Identities=12%  Similarity=0.114  Sum_probs=109.2

Q ss_pred             ccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhh------c
Q 045410          376 PGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERK----RRLSAL------Q  445 (589)
Q Consensus       376 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~----~~~~~~------~  445 (589)
                      .+.+..-+-++.++.+.++..+    ..|.       ++.+++.+|+++++++.++..+....    .++...      .
T Consensus       134 sG~I~s~~dig~~l~i~fVsYf----G~r~-------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  134 SGLIASSYDIGNLLLIIFVSYF----GSRG-------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             ceeEeeecccchhhhhHhHHHh----cccc-------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            4444445555555555554443    4442       44558999999999999999876311    111100      0


Q ss_pred             c---------------C-----CC----C-ccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHH
Q 045410          446 H---------------G-----SF----E-SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSL  500 (589)
Q Consensus       446 ~---------------~-----~~----~-~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  500 (589)
                      .               .     +.    . +...+..++.+.++.|+|..-.++....|+-|-+-++.-..+.|+.+...
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence            0               0     11    1 11244456778889999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhhcccc---------ccCCCCCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHHHhccccc
Q 045410          501 SISSYINSALVNIIHGLTKK---------YAKAPWLGGTDLNKDTLDY-FYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       501 ~lg~~l~~~l~~~i~~~~~~---------~~~~~w~~~~~~~~~~~~~-~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      .+|=++|-.++++.......         ..++.|.+        .-| -|++++.+.++..+.++++-++.++
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG--------AWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG--------AWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh--------HHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            88888887777766532211         01234433        223 3778888888887777777555543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.82  E-value=0.21  Score=52.24  Aligned_cols=124  Identities=17%  Similarity=0.126  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCch---hhHHHH
Q 045410          417 RITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPES---MRTVSG  493 (589)
Q Consensus       417 ~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~  493 (589)
                      .+.+|.++..+|.+++.+....    .    ......+...+.++..+.++|.++.-|....+..++++++   .|..+.
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~----~----~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F   74 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP----P----SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFF   74 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS----S----SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc----c----hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhH
Confidence            5778888888898886655310    0    0001223456677888999999999999999999999876   355555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 045410          494 AVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSS  565 (589)
Q Consensus       494 g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~  565 (589)
                      ..+....++|+.++..+.+.+-+..                 ++.+.|.+.++..+++.+.++...++.++.
T Consensus        75 ~~fY~~in~G~~~~~~~~~~i~~~~-----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   75 NWFYWGINIGSLFSPTLVPYIQQNY-----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHCS------------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             HHHHHHHhhhhHhhcccchhhcccc-----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            6667777889999888887775321                 356678888888888877766655554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.71  E-value=0.28  Score=52.63  Aligned_cols=118  Identities=22%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhcc---Cchhh
Q 045410          413 TMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQL---PESMR  489 (589)
Q Consensus       413 ~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~r  489 (589)
                      +++..+.+|.++..++.+.++....             ...+.......+.+..+|..+.....-++..|..   |.+ |
T Consensus        57 rr~~Y~~i~~~~~~~~~~~~~~~~~-------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~  122 (433)
T PF03092_consen   57 RRKPYMIIGWLLGAVSALVLALLPA-------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R  122 (433)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccc-------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence            3445777788877777776666541             0123334455667778888888888888888776   455 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045410          490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACR  561 (589)
Q Consensus       490 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~  561 (589)
                      |..++.......+|+.++..+.|...+...                 +...|.+.+.+.++..+..+++..|
T Consensus       123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-----------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  123 GDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-----------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence            888888888999999999999987765321                 1234566666666666566666555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=94.20  E-value=6.6  Score=40.37  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             hhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhH
Q 045410          393 FYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFA  472 (589)
Q Consensus       393 l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~  472 (589)
                      +.+.++..+.||+|||+       ......++..++++.-..                  .+...++.+-++.|++....
T Consensus        84 i~g~~~G~laD~~Grk~-------~cl~~cily~~scl~k~~------------------~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   84 IFGTFVGSLADRYGRKK-------ACLLFCILYSLSCLTKHS------------------SNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHHHHhc------------------cccHHHHHHHHHHHHHHHHH
Confidence            33444555588877663       556666666666653322                  24556778889999998887


Q ss_pred             hhhHHHHHh-----hccCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 045410          473 AVAVMEFLT-----TQLPESMRTVSGAVFF-LSLSISSYINSALVNIIH  515 (589)
Q Consensus       473 ~~~~~~~~~-----~~~P~~~rg~~~g~~~-~~~~lg~~l~~~l~~~i~  515 (589)
                      +.+.=++..     +..|++..+...+... ..+.+-.+.++.+.....
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~  187 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLA  187 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence            776555544     4466666555544433 233344444444444444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.99  E-value=1.7  Score=39.31  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHH
Q 045410          414 MRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSG  493 (589)
Q Consensus       414 ~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~  493 (589)
                      +++.+.+|.++..+-.+.....                  +.+.+++.-++.|++.+....+.-.++.+...++.|++-.
T Consensus        66 ~K~sm~lg~~~y~~y~~~~~~~------------------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~  127 (156)
T PF05978_consen   66 PKWSMILGSLGYAIYIASFFYP------------------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNT  127 (156)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHH
Confidence            3356777777666554443322                  4567788999999999999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 045410          494 AVFFLSLSISSYINSALVNIIH  515 (589)
Q Consensus       494 g~~~~~~~lg~~l~~~l~~~i~  515 (589)
                      +++.....++..+|..+.-.+.
T Consensus       128 ~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  128 GIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888887765554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.82  E-value=1.9  Score=43.88  Aligned_cols=94  Identities=6%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccCCCCCCCCC
Q 045410          454 SILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKK--YAKAPWLGGTD  531 (589)
Q Consensus       454 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~--~~~~~w~~~~~  531 (589)
                      ++|+.-..+++...-.++..+....-+.+....+.-|...|++.+..-+-+.+-+.   .+.|..+.  +-.+++     
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~-----  396 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQF-----  396 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeE-----
Confidence            56677778888877777777766666667777777888888876654433333222   22232111  000111     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 045410          532 LNKDTLDYFYFTIAALEVVNLLYFNFF  558 (589)
Q Consensus       532 ~~~~~~~~~f~~~a~~~~~~~~~~~~~  558 (589)
                         .-|...|.+++++.++.....+..
T Consensus       397 ---~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  397 ---VVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             ---EEEeehHHHHHHHHHHHHHHHHHH
Confidence               124456788888888886654444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.35  E-value=3.1  Score=44.37  Aligned_cols=134  Identities=13%  Similarity=0.069  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 045410           50 ANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTG  129 (589)
Q Consensus        50 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  129 (589)
                      ..+..|+..+ |+++...|..=+...+....+.....++.+| +|..|.=+++...-.+...++..+-..|....     
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-----  351 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-----  351 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-----
Confidence            4567888766 9999999999999999999999999999999 59999999998876665555544332222000     


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 045410          130 AQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAV  202 (589)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  202 (589)
                            +..+...++.+.++-=+|--++.-+..-++-|..|+      ++|+...+..+...++.-.+-..++
T Consensus       352 ------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~------~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  352 ------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE------SERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             ------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH------HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                  123555666666666677777788888888888876      4588888888778888877776554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.54  E-value=24  Score=38.41  Aligned_cols=168  Identities=11%  Similarity=0.049  Sum_probs=92.5

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC---CchhHHHHHHHHHHH-HHHhhhhhhhHHhhhcccchHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN---MDGILLVNVVSIWGG-SSSLTAIPGALLSDTYLGRFRTLLYG  102 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~  102 (589)
                      -++.++.+.++-|+..+.|..+..     +.|.+=   .+......+-....+ ...+...+-.++++|+ +|.+++-+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~   95 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            355555555666666665432222     233221   244555555443333 5566678899999995 999999888


Q ss_pred             HHHHHHHHHHHHHhhcCCC---CCCCCCCCC--C--CCCCCc----hhHHHHHHHHHHHHHhhccccc-cHHHHhhccCC
Q 045410          103 SIASFLGMGIMTLTASIPK---LRPPDCTGA--Q--CPQPEG----WQLSILYAGLALLAIGSGGIRP-CNIAFGADQFD  170 (589)
Q Consensus       103 ~~~~~~~~~~~~~~~s~~~---~~~~~~~~~--~--~~~~~~----~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~  170 (589)
                      .+.+.....++++.- .|-   +.++...++  .  +..-.+    .+.|...+.-+..-+-.....+ .-+.+..|.++
T Consensus        96 ~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   96 IIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777777666666542 221   222111000  0  000000    0112222221222222222223 35788888887


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          171 TTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       171 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                      .      ++-.+.+.+++.+.|+|.+++..+..++.+
T Consensus       175 ~------~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 V------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6      345568999999999999999888888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.14  E-value=31  Score=37.34  Aligned_cols=56  Identities=9%  Similarity=0.021  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhHhh-hHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045410          461 QFSFSGLTEGFAAV-AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHG  516 (589)
Q Consensus       461 ~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~  516 (589)
                      .++..-+...+... ..|.++.|.+..++..+-.++.....++|..+++.+...+.+
T Consensus       134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444443 789999999999999999999999999999999999887664

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=89.46  E-value=34  Score=36.82  Aligned_cols=165  Identities=9%  Similarity=0.003  Sum_probs=100.5

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCc---hhHHHHHHHHHHH-HHHhhhhhhhHHhhhcccchHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMD---GILLVNVVSIWGG-SSSLTAIPGALLSDTYLGRFRTLLYG  102 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~  102 (589)
                      -++.++.+.+..++..+.++.+..     +.|.+.++   +....++-..+.+ .+.+..++-+++.+++ -|.+++-.-
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            466677777777777777654443     55666554   5555666666666 6778889999999995 999999988


Q ss_pred             HHHHHHHHHHHHHhhcCC--C-CCCCCCC-------CC-----CCCCCCchhHHHHHHHHHHHHHhhccccc-cHHHHhh
Q 045410          103 SIASFLGMGIMTLTASIP--K-LRPPDCT-------GA-----QCPQPEGWQLSILYAGLALLAIGSGGIRP-CNIAFGA  166 (589)
Q Consensus       103 ~~~~~~~~~~~~~~~s~~--~-~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~  166 (589)
                      ...+....+++++.- .|  + +.++...       +.     ..+-.+.++...+++.-   -+-...+.+ .-+....
T Consensus        99 ~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~a---ELWgslV~S~lFw~faN  174 (509)
T COG3202          99 LGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMA---ELWGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            888888888877753 22  1 2221110       00     00011112222222221   111111112 3456667


Q ss_pred             ccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          167 DQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQT  207 (589)
Q Consensus       167 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  207 (589)
                      |++..      ++-.|.+++++...|++..++..+..++.+
T Consensus       175 eitt~------~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         175 EITTI------EEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HhhhH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77664      344568999999999999998888888775

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.10  E-value=27  Score=37.52  Aligned_cols=128  Identities=22%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             hcCCchhHHHHHHHH-HHHHHHhhhhhhhHHh---hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCC
Q 045410           59 KYNMDGILLVNVVSI-WGGSSSLTAIPGALLS---DTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDC-TGAQCP  133 (589)
Q Consensus        59 ~lg~s~~~~~~~~~~-~~~~~~~~~~~~G~la---Dr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~  133 (589)
                      ..+.++...-.+.++ ...+..++..+.+.+.   +| +||++.+.++.++..++.++..+..  |...+ .. ++..+.
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap-~~~t~~~~~  347 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP-LRPTDSPPL  347 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCC-CCCCccccc
Confidence            445554444333222 2233344455555565   55 6999999999888888777766532  32111 00 011111


Q ss_pred             CCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 045410          134 QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVA  198 (589)
Q Consensus       134 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  198 (589)
                      . ...+.....+.-+++|++-++.....+.++++.+|++       |..+++++-.--.++..++
T Consensus       348 ~-~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  348 L-FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             c-cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHH
Confidence            1 1123445556667899999999999999999999642       4456666555555555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.78  E-value=6.3  Score=41.43  Aligned_cols=61  Identities=8%  Similarity=-0.037  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          139 QLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYI  205 (589)
Q Consensus       139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  205 (589)
                      +.|..++..+..|+..|+.+.+....+.|..++      +.|..+++...++-++|..++..++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~------~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP------EDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            567777777888999999999999999987665      3466778888788888888887665444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.32  E-value=5.7  Score=39.86  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045410          454 SILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALV  511 (589)
Q Consensus       454 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~  511 (589)
                      +++.++..+++-|+-.+..+...+--+.+..+++.|-.+++...+.-.+|-.++..+.
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            5555555555566666666666666677888999999999997777777777766655

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=85.11  E-value=36  Score=35.96  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHH
Q 045410          417 RITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVF  496 (589)
Q Consensus       417 ~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  496 (589)
                      .++++.+...+...++.+..                 +..++-+.-++.|++... -.+-++|+...+|++.=-++.+..
T Consensus        73 viil~~~~~i~t~~lll~~~-----------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~  134 (412)
T PF01770_consen   73 VIILQALSYIITWLLLLFGT-----------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYT  134 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-----------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHH
Confidence            55555555555555544432                 555666666667776554 456678999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 045410          497 FLSLSISSYINSALVNIIHG  516 (589)
Q Consensus       497 ~~~~~lg~~l~~~l~~~i~~  516 (589)
                      ..+.-+|..++..++..+..
T Consensus       135 raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen  135 RAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888876654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.49  E-value=30  Score=33.96  Aligned_cols=52  Identities=10%  Similarity=0.298  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-------hcchhHhHHHHHHHHHHHHHHHHHhhcccc
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQT-------NVSWILGFAIPTGCFFLSIVVFLIGYHTYI  237 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~  237 (589)
                      .....++.++|+++.-+.  ++..       ...|++.+.+.+.+.++-++++.+.-++..
T Consensus         8 s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd   66 (267)
T PF07672_consen    8 SQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFD   66 (267)
T ss_pred             eeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            333444667777766432  3222       135999988888777777766666555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=83.88  E-value=11  Score=37.02  Aligned_cols=139  Identities=13%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHhhhcccch--HHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCCCCCCCCCchhHH
Q 045410           65 ILLVNVVSIWGGSSSLTAIPGALLSDTYLGRF--RTLLYGSIASFLGMGIMTLTA-SIPKLRPPDCTGAQCPQPEGWQLS  141 (589)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~l~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~  141 (589)
                      .--|.+.+.+.++.++++-+..++..|. ..|  ..+.+..+..++...+..+.. ..|+               ..++.
T Consensus       282 iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~---------------kes~~  345 (454)
T KOG4332|consen  282 IPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS---------------KESPS  345 (454)
T ss_pred             CCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC---------------cCCch
Confidence            3358889999999999988888887773 322  334444444444333333322 1222               12445


Q ss_pred             HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHH
Q 045410          142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGC  221 (589)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~  221 (589)
                      .-+++..++-.+.|.+.|.+.-+=.+..|+      +.|++.+++|..-.|+-..++-...-.-....+-|-.|-++.+.
T Consensus       346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPE------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~  419 (454)
T KOG4332|consen  346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPE------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF  419 (454)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHhhCCH------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence            557777788889999999999988888876      45888999998888776654421100000113456677776665


Q ss_pred             HHHH
Q 045410          222 FFLS  225 (589)
Q Consensus       222 ~~i~  225 (589)
                      ...+
T Consensus       420 ~~~a  423 (454)
T KOG4332|consen  420 LFVA  423 (454)
T ss_pred             HHHH
Confidence            5444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.28  E-value=8.8  Score=41.27  Aligned_cols=41  Identities=10%  Similarity=0.063  Sum_probs=25.0

Q ss_pred             HhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045410          472 AAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVN  512 (589)
Q Consensus       472 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~  512 (589)
                      ...+.-.++..+..++.++.+.-.....+.+|-+++..+.-
T Consensus       135 QDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFl  175 (544)
T PF13000_consen  135 QDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFL  175 (544)
T ss_pred             CCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHH
Confidence            34455556666777777877776655555566665544443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=81.85  E-value=10  Score=40.56  Aligned_cols=114  Identities=12%  Similarity=0.012  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhhhcccch-HHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCCCCCCCCchh
Q 045410           66 LLVNVVSIWGGSSSLTAIPGALLSDTYLGRF-RTLLYGSIASFLGMGIMTLTASIP-----KLRPPDCTGAQCPQPEGWQ  139 (589)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-~~l~~~~~~~~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~~~~  139 (589)
                      -.-.+..+|.++-.+|..+..+..=.  .+| +.+.+..++-.+...++.+...-|     .+.+              +
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~p--~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~--------------~  371 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMWP--DEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFP--------------G  371 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEee--CCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeec--------------c
Confidence            44556677777777777755543111  222 245555565555555544433111     1111              3


Q ss_pred             HHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 045410          140 LSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTA  201 (589)
Q Consensus       140 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  201 (589)
                      .+..++..++.|+.+|...+....+..+..++      ++|..+-.+...+.++|-.+|..+
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~------~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP------HEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556667899999999988888888887654      234445555555667777766654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=80.47  E-value=9.2  Score=37.49  Aligned_cols=29  Identities=7%  Similarity=-0.002  Sum_probs=18.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045410          486 ESMRTVSGAVFFLSLSISSYINSALVNII  514 (589)
Q Consensus       486 ~~~rg~~~g~~~~~~~lg~~l~~~l~~~i  514 (589)
                      +-+|..+.|+..+..+..+.+.++..+.+
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grf  102 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRF  102 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence            33466777776666666666666666543

The region concerned is approximately 280 residues long.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=80.05  E-value=21  Score=34.54  Aligned_cols=62  Identities=18%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHHHHhHhhhHHHHHhhccCc-hhhHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 045410          455 ILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPE-SMRTVSGAVFFL-SLSISSYINSALVNIIHG  516 (589)
Q Consensus       455 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~lg~~l~~~l~~~i~~  516 (589)
                      .+.++......+++.+...+....+..+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555557888888889999999999998 678888888877 466777788766665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	589
2xut_A	524	Proton/peptide symporter family protein; transport	1e-103
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  320 bits (821), Expect = e-103
 Identities = 99/568 (17%), Positives = 203/568 (35%), Gaps = 54/568 (9%)

Query: 21  SQRPKGGW-RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLV------NVVSI 73
           S      W R I YI+ +E  E+ +   +   +T +L T   +     +      +V   
Sbjct: 3   SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHS 62

Query: 74  WGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCP 133
           +        + G  ++D + G++ T+L+ S+   +G   + +                  
Sbjct: 63  FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH--------------- 107

Query: 134 QPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTV 193
                 +   Y GL L+A+GSGGI+P   +F  DQFD +           F+ +YF+   
Sbjct: 108 -----SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINF 159

Query: 194 ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVI 253
               A  ++  +  N    + F IP    F++ V F +G   YI   P+         VI
Sbjct: 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219

Query: 254 TASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSS-ELDD 312
            ++   +    G           ++ +        +P       L  A V+V        
Sbjct: 220 RSALLTKVEGKGNIGLVLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMGFVGAGA 276

Query: 313 DGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSF 372
             + +   +      V+ ++ ++ +  ++      +   DQ+ +  ILQA          
Sbjct: 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND---MVKPQ 333

Query: 373 NVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVA 432
              P  M  ++ L +   I F   V  P  ++M     +LT  +++  GI +  LS +V 
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVV 390

Query: 433 GFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVS 492
           G ++      +         +SI   +  ++     E   +   +EF  +Q P++M+   
Sbjct: 391 GTIQLMMDGGS--------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 493 GAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNL 552
            + + LS+++ +         +   T        +  T ++      F+F  A   ++  
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFF--AGFAILAA 496

Query: 553 LYFNFFACRFVSSNAIGKKESQSEEKSQ 580
           + F  +A  +   +   +         Q
Sbjct: 497 IVFALYARSYQMQDHYRQATGSENLYFQ 524

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 29/213 (13%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 29  RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILL-----VNVVSIWGGSSSLTAI 83
             +  +   E +E+ +   + A +  Y+    +   + +      ++++I+     L+  
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 84  PGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSIL 143
            G  ++D  +G    + +G +   LG  ++ L                         S L
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA---------------------SAL 111

Query: 144 YAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVV 203
           +  + L+ IG+G ++P         +     +   + ++ F+ + F   +   +A   V 
Sbjct: 112 FGSIILIIIGTGFLKPNVSTLVGTLY----DEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167

Query: 204 YIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTY 236
             Q    + + F++     F+ ++V+  G    
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 74/498 (14%), Positives = 136/498 (27%), Gaps = 165/498 (33%)

Query: 169 FDTTTPKGKSQLESF--------FNWWYFSF-TVALVVALTAVVYI-QTNVSWILGFAIP 218
           F T   K +  ++ F        + +      T     ++   +YI Q +  +       
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------- 120

Query: 219 TGCFFLSIVVFLIGYHTYIIK------------NPQGSVFVD-MA---K-VITAS-CRKR 260
                 +       Y+   ++             P  +V +D +    K  +    C   
Sbjct: 121 ------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 261 KV-----------NLGQASG--------NSLY---DPPLTQSETESKTTKLP------HT 292
           KV           NL   +           L    DP  T     S   KL         
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 293 NRF-------RCLDKAAVIVDSSELDD--DGKAKNGWRL-CSLL----QVEQLKLLVAMF 338
            R         CL     +V    L +  + KA N + L C +L      +    L A  
Sbjct: 235 RRLLKSKPYENCL-----LV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 339 PVWITGIFCFLAMDQQNTIGIL-------------QAIQTNKRFGSFNVPPGWMGLISML 385
              I+     + +       +L             + + TN         P  + +I+  
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---------PRRLSIIAES 336

Query: 386 T---LSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLS 442
               L+TW  +         + +   K+   +             SL V    E ++   
Sbjct: 337 IRDGLATWDNW---------KHVNCDKLTTIIE-----------SSLNVLEPAEYRKMFD 376

Query: 443 ALQHGSFE--SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESM---RTVSGAVFF 497
            L    F   + I  ++L      S +        VM  +      S+   +     +  
Sbjct: 377 RL--SVFPPSAHIPTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 498 LSLSISSYINSALVNIIH-GLTKKYAKAPWLGGTDLNKDTLD-YFYFTIA---------- 545
            S+ +   +       +H  +   Y         DL    LD YFY  I           
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 546 ALEVVNLLYFNFFACRFV 563
            + +  +++ +F   RF+
Sbjct: 489 RMTLFRMVFLDF---RFL 503

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	589
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.39
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.27
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.05
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.02
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.84
2xut_A	524	Proton/peptide symporter family protein; transport	98.27

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=7.1e-31  Score=283.84  Aligned_cols=444  Identities=15%  Similarity=0.237  Sum_probs=297.8

Q ss_pred             CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhh-cccchHH
Q 045410           25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTK-----YNMDGILLVNVVSIWGGSSSLTAIPGALLSDT-YLGRFRT   98 (589)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~   98 (589)
                      ++++|..+.+....++..+++|++.++++.|+.+.     +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45677888888999999999999999999999988     99999999999999999999999999999999 6 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410           99 LLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS  178 (589)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  178 (589)
                      ++.+.++..++.++++++.                     +.+.++++|+++|++.+...+...+++.|.+|+++    +
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF---------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----R  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC---------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----T
T ss_pred             HHHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----c
Confidence            9999999999999998866                     55679999999999999999999999999998743    3


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc---CCCC-ChHHHHHHHHH
Q 045410          179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK---NPQG-SVFVDMAKVIT  254 (589)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~  254 (589)
                      .|+.++++++.+.++|..++|.+++++.+..|||+.|++.++..+++.+.+++..++...+   +++. ....+..+...
T Consensus       143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (491)
T 4aps_A          143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV  222 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred             cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence            4778899999999999999999999999999999999998776666665555444432211   1111 11111111000


Q ss_pred             H--------------HHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCc
Q 045410          255 A--------------SCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGW  320 (589)
Q Consensus       255 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (589)
                      .              ...+++.                           +..+.................      ...|
T Consensus       223 ~~g~~l~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~  269 (491)
T 4aps_A          223 KVSLAVAGFIAIIVVMNLVGWN---------------------------SLPAYINLLTIVAIAIPVFYF------AWMI  269 (491)
T ss_dssp             HCCCCCHHHHHHHHHHHHHSSC---------------------------CTTHHHHHHHHHHHHHHHHHH------HHHC
T ss_pred             HHHHHHHHHHHHHHHHHhccCc---------------------------ccccchhhhhHHHHHHHHHHH------HHHh
Confidence            0              0000000                           000000000000000000000      0000


Q ss_pred             ccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHH
Q 045410          321 RLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFV  399 (589)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~  399 (589)
                      +... ....+.++......+++....++..+.+.......+. ...+.+.    ...+.....+.+..++..++.+++  
T Consensus       270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l--  342 (491)
T 4aps_A          270 SSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWL--  342 (491)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHH--
T ss_pred             hccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc----cCHHHHhccchHHHHHHHHHHHHH--
Confidence            0000 0011233334444555556666666665555332222 2222221    345666777777777777776666  


Q ss_pred             HhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHH
Q 045410          400 PLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEF  479 (589)
Q Consensus       400 ~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~  479 (589)
                        .+|+++|+  ......+.+++++.+++++++.+.....        ......+.++.++.+++.+++.++..+..+++
T Consensus       343 --~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  410 (491)
T 4aps_A          343 --WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY--------GTSGKVSPLWLVGSWALVILGEMLISPVGLSV  410 (491)
T ss_dssp             --HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC--------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             --HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence              66666553  2555677789999988888777654210        00113356677778889999999999999999


Q ss_pred             HhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          480 LTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       480 ~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      +.|.+|++.||+++|+.++...+|+.+++.+.+.+.+.                  ++.+.|.+++++.++..++++++.
T Consensus       411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------------SEVAYFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------------STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998777542                  133567777888777777777665


Q ss_pred             ccccc
Q 045410          560 CRFVS  564 (589)
Q Consensus       560 ~~~~~  564 (589)
                      ++.++
T Consensus       473 ~~~~~  477 (491)
T 4aps_A          473 KRIQG  477 (491)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            55443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=1.4e-29  Score=276.20  Aligned_cols=484  Identities=20%  Similarity=0.275  Sum_probs=284.3

Q ss_pred             CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-cchHH
Q 045410           26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN------MDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-GRFRT   98 (589)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~   98 (589)
                      +++|..+.+.+..++..+++|++.++++.|+.+++|      ++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~   87 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT   87 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence            445666778889999999999999999999999999      999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410           99 LLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS  178 (589)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  178 (589)
                      ++++.++..++.++++++.                    .+.+.++++|+++|++.+...+...+++.|.+|++++   .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~  144 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE--------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---S  144 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS--------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---T
T ss_pred             HHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---H
Confidence            9999999999998888754                    1467789999999999999999999999999987431   1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHh
Q 045410          179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCR  258 (589)
Q Consensus       179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (589)
                      .+...+++++.+.++|..++|.+++++.+..||++.|++.+++.++..+..+...++.+..+|++++..+..+......+
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL  224 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh
Confidence            23456677888999999999999999999899999999887776665555444333333222222221111111111111


Q ss_pred             ccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhh--hcCCccccCCCCCCCcc-------cchhhhHH
Q 045410          259 KRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVI--VDSSELDDDGKAKNGWR-------LCSLLQVE  329 (589)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~  329 (589)
                      +++...+...  .....    .+.........+.+.........+.  ...+     .....+|.       .+..+...
T Consensus       225 ~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  293 (524)
T 2xut_A          225 TKVEGKGNIG--LVLAL----IGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-----FVGAGASLQLERARKSHPDAAVD  293 (524)
T ss_dssp             --CTTHHHHH--HHHHH----HHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-----HHHTGGGTHHHHSCCSCCSSSST
T ss_pred             hhhcccCccc--hhhhh----hhhhhhhhhhcccchhhhhhhhhhhhhhhhc-----ccccchhhHHhhhhccccHhHHH
Confidence            1110000000  00000    0000000000000000000000000  0000     00000110       00000111


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCC
Q 045410          330 QLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKK  409 (589)
Q Consensus       330 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~  409 (589)
                      +.++.+.....+.....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..+..+|.++| 
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  369 (524)
T 2xut_A          294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK-  369 (524)
T ss_dssp             TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC-
Confidence            2233333344444445555555555554444433333221  1 23455566666777777788777655545555433 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhh
Q 045410          410 IRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR  489 (589)
Q Consensus       410 ~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r  489 (589)
                        .+..+.+.+|+++.+++++++.+.....        +.....+.+++++.+++.+++++...+..+++..+.+|++.|
T Consensus       370 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~  439 (524)
T 2xut_A          370 --LTALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK  439 (524)
T ss_dssp             ---CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence              3555677788888888877766532100        000123556677788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410          490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVS  564 (589)
Q Consensus       490 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~  564 (589)
                      |+++|++++...+|+.+++.+.+.+.+....    +|...++.+.  ..+.|++++++.+++.++++++.++.++
T Consensus       440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (524)
T 2xut_A          440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQM  508 (524)
T ss_dssp             TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999988653210    1211000010  1233677777777777776666655544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=2.1e-27  Score=253.22  Aligned_cols=398  Identities=11%  Similarity=0.003  Sum_probs=250.9

Q ss_pred             CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      +|+.++.+....+...+..+.+.+.++. +.+++ .+..+.+++.+++.++..++.+++|+++|| +|||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence            3555555556667776666655555554 45567 999999999999999999999999999999 59999999999999


Q ss_pred             HHHHHHHHH----hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhh
Q 045410          107 FLGMGIMTL----TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLES  182 (589)
Q Consensus       107 ~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  182 (589)
                      +++.+++++    +.                     +.+.++++|+++|++.+...+...+++.|.+|+      ++|++
T Consensus       103 ~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~  155 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS---------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGG  155 (451)
T ss_dssp             HHHHHHHHHCHHHHS---------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHH
T ss_pred             HHHHHHHHhhhhccc---------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhH
Confidence            999999998    66                     556799999999999999999999999999986      45888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccc
Q 045410          183 FFNWWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRK  261 (589)
Q Consensus       183 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (589)
                      .+++.+.+.++|.+++|.+++++.+..| ||+.|++.+++.++..++.++..++.+......+                 
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  218 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-----------------  218 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-----------------
Confidence            9999999999999999999999888898 9999998887766555544444332211110000                 


Q ss_pred             cccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccc-hhhhHHHHHHHHhHH-H
Q 045410          262 VNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLC-SLLQVEQLKLLVAMF-P  339 (589)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~  339 (589)
                          .++    .+.... ++.   ...                         ......++.. ..+..++ +.++... .
T Consensus       219 ----~~~----~~~~~~-~~~---~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~  260 (451)
T 1pw4_A          219 ----IEE----YKNDYP-DDY---NEK-------------------------AEQELTAKQIFMQYVLPN-KLLWYIAIA  260 (451)
T ss_dssp             ----CTT----TCCC------------------------------------------CCTHHHHHHTSSC-HHHHHHHHH
T ss_pred             ----hhh----hccccc-ccc---hhh-------------------------hhcccccccchHHHHHcC-HHHHHHHHH
Confidence                000    000000 000   000                         0000000000 0000000 1111111 1


Q ss_pred             HHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhh--cCCCCCCCchHH
Q 045410          340 VWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKM--TGKKIRLTMRQR  417 (589)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~--~~k~~~~~~~~~  417 (589)
                      .++....++.. ..+.+.+..+..+.+.      ...+.......++.+++..+.+++    .+|+  ++|       +.
T Consensus       261 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~-------~~  322 (451)
T 1pw4_A          261 NVFVYLLRYGI-LDWSPTYLKEVKHFAL------DKSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR-------GA  322 (451)
T ss_dssp             HHHHHHHHHHH-HHHHHHHBTTBSCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH-------HH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc-------hh
Confidence            11111111111 1111111111011111      112333444445555555555554    5664  322       24


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHH
Q 045410          418 ITIGILMAI-LSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVF  496 (589)
Q Consensus       418 i~~g~~l~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  496 (589)
                      +.++..+.. ++++++.+..               ..+.+..+....+.+++.....+..+.+..+.+|++.||++.|+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  387 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence            444544444 5555443321               124445556667778877777888889999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410          497 FLSLSI-SSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA  559 (589)
Q Consensus       497 ~~~~~l-g~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~  559 (589)
                      ++...+ |..+++.+.+.+.+..                 ++...|++.+++.+++.++.+...
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFF-----------------GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSS-----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 9999999999887632                 135677777777777776666553

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=6e-27  Score=252.90  Aligned_cols=424  Identities=12%  Similarity=0.049  Sum_probs=230.3

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHH
Q 045410           62 MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLS  141 (589)
Q Consensus        62 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  141 (589)
                      .++.+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++..........   ......-..+.+
T Consensus        52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~---~~~~~~~a~~~~  127 (491)
T 4gc0_A           52 AANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD---NTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS---SSCCGGGGGCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch---hHHHHHHhhhHH
Confidence            3456778999999999999999999999995 999999999999999999998643111000000   000000123778


Q ss_pred             HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------cchhH
Q 045410          142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN--------VSWIL  213 (589)
Q Consensus       142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~~~  213 (589)
                      .++++|+++|+|.|+..+..+.+++|..|+      +.|++..++++.+..+|..+++.++..+...        .+||+
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            999999999999999999999999999987      5688888888889999999988777666542        34666


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcc---ccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCC
Q 045410          214 GFAIPTGCFFLSIVVFLIGYHT---YIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLP  290 (589)
Q Consensus       214 ~f~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (589)
                      .+.+.....++.++..+. .|+   +...+.+.++   ..+.......+..... +                        
T Consensus       202 ~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~---a~~~l~~~~~~~~~~~-~------------------------  252 (491)
T 4gc0_A          202 MFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQ---AEGILRKIMGNTLATQ-A------------------------  252 (491)
T ss_dssp             HHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHH---HHHHHHHHHHHHHHHH-H------------------------
T ss_pred             Hhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhH---HHHhHHHhcCCchhHH-H------------------------
Confidence            655544443333322211 111   1111111111   1111100000000000 0                        


Q ss_pred             CCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccC
Q 045410          291 HTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG  370 (589)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (589)
                           ...........++        ....     ......++.....................+.....+....+.   
T Consensus       253 -----~~~~~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  311 (491)
T 4gc0_A          253 -----VQEIKHSLDHGRK--------TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST---  311 (491)
T ss_dssp             -----HHHHHHHHHHHHH--------HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH---
T ss_pred             -----HHHHHHHHHhhhh--------hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc---
Confidence                 0000000000000        0000     000000111111111111100000000000111111111100   


Q ss_pred             cccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 045410          371 SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFE  450 (589)
Q Consensus       371 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~  450 (589)
                         ........+..+..++...+..    .+.+|++||       +.+..+...+.++++.++.....            
T Consensus       312 ---~~~~~~~~~~~~~~~~~~~~~~----~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~------------  365 (491)
T 4gc0_A          312 ---DIALLQTIIVGVINLTFTVLAI----MTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT------------  365 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred             ---cchhhHHHHHHHHHHHHHHHHH----HHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc------------
Confidence               1111112222233333333333    346676555       35667777777777666654320            


Q ss_pred             ccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 045410          451 SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGT  530 (589)
Q Consensus       451 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~  530 (589)
                      .......++..+.+.........|..+.+..|.+|.+.|++++|+.+..+.+++.+++.+.+.+.+......        
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~--------  437 (491)
T 4gc0_A          366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA--------  437 (491)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH--------
T ss_pred             ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            011222222233333333444567788999999999999999999999999999999998887653211000        


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHhhhhh
Q 045410          531 DLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNK  582 (589)
Q Consensus       531 ~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (589)
                         ..+..+.|+++++++++..++.+++.||+|+++.||.|+..++++++++
T Consensus       438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~  486 (491)
T 4gc0_A          438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ  486 (491)
T ss_dssp             ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred             ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence               0012346788899999999999999999999999999877655544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=7.9e-25  Score=232.43  Aligned_cols=359  Identities=10%  Similarity=0.018  Sum_probs=230.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410           24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS  103 (589)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~  103 (589)
                      .+++++.+..+....++..+..+ ....+.+++.+++|+++.+.+++.+++.++..++.++.|+++|| +|||++++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~   98 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGL   98 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHH
Confidence            34456666666666666666655 44445555778999999999999999999999999999999999 59999999999


Q ss_pred             HHHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410          104 IASFLGMGIM---TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL  180 (589)
Q Consensus       104 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  180 (589)
                      ++.+++.+++   .++.                     +.+.++++|++.|++.+...+...+++.|.+|+      ++|
T Consensus        99 ~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r  151 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSG  151 (438)
T ss_dssp             HHHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTH
T ss_pred             HHHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhH
Confidence            9999999998   5544                     778899999999999999999999999999987      447


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------------------------hhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          181 ESFFNWWYFSFTVALVVALTAVVYIQ-TNVS-------------------------WILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       181 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      ++.+++++.+.++|..++|.+++++. +..+                         ||+.|++.+...++..+..+....
T Consensus       152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  231 (438)
T 3o7q_A          152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            78899999999999999999999988 5444                         899987766554444433332111


Q ss_pred             cccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCC
Q 045410          235 TYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDG  314 (589)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (589)
                        ++.+++.++                    +++       ..               +.   .                
T Consensus       232 --p~~~~~~~~--------------------~~~-------~~---------------~~---~----------------  248 (438)
T 3o7q_A          232 --PALQSDNHS--------------------DAK-------QG---------------SF---S----------------  248 (438)
T ss_dssp             --CCCTTTCCC--------------------CSS-------TT---------------SH---H----------------
T ss_pred             --Ccccccccc--------------------ccc-------cc---------------ch---h----------------
Confidence              110000000                    000       00               00   0                


Q ss_pred             CCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhh
Q 045410          315 KAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFY  394 (589)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  394 (589)
                         ..++.    ..++.+.....+..++............+.+...+..+.+.      ...+.......+..+++.++.
T Consensus       249 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~  315 (438)
T 3o7q_A          249 ---ASLSR----LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTG  315 (438)
T ss_dssp             ---HHHHH----HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhHHH----HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHH
Confidence               00000    00000011111111111111111111111120211112221      112333444444555555555


Q ss_pred             hhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhh
Q 045410          395 ERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAV  474 (589)
Q Consensus       395 ~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~  474 (589)
                      +++    .+|+++|       +.+.++.++..++++++.+..                 +. +.+....+.+++.+...|
T Consensus       316 g~l----~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~~~~~~~~  366 (438)
T 3o7q_A          316 TWL----ISRFAPH-------KVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLCSAFMSIQYP  366 (438)
T ss_dssp             HHH----HHHSCHH-------HHHHHHHHHHHHHHHHHHHCC-----------------HH-HHHHHHHHHHHHHTTHHH
T ss_pred             HHH----HHHhcch-------HHHHHHHHHHHHHHHHHHHcC-----------------Cc-HHHHHHHHHHHHHHHHHH
Confidence            554    5665333       466677777777766555431                 22 234445677788888889


Q ss_pred             hHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045410          475 AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLT  518 (589)
Q Consensus       475 ~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~  518 (589)
                      ..+.+..+..|++ ++.+.++.. ...+++.+++.+.+.+.|..
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988 999999877 56799999999999888754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=1.2e-22  Score=211.45  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH
Q 045410           33 YILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI  112 (589)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~  112 (589)
                      .+....++..+......+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence            3445666666665555555555 567899999999999999999999999999999999 59999999999999999999


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410          113 MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT  192 (589)
Q Consensus       113 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  192 (589)
                      +.+++                     +.+.++++|++.|++.+...+...+++.|.+|++      +|++.+++++...+
T Consensus        82 ~~~~~---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (375)
T 2gfp_A           82 AVTTS---------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL  134 (375)
T ss_dssp             HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred             HHHhc---------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence            99877                     7888999999999999999999999999999863      36677899999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410          193 VALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI  226 (589)
Q Consensus       193 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~  226 (589)
                      +|..++|.+++++.+..+||+.|++.++..++..
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            9999999999999988899999987766554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=3.2e-22  Score=211.76  Aligned_cols=398  Identities=13%  Similarity=0.046  Sum_probs=215.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|..+......++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++|| +||||+++++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGML   84 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            3455555566667767767777899999998999999999999999999999999999999999 599999999888765


Q ss_pred             HHHHHH---HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          108 LGMGIM---TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       108 ~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      ++...+   .+....                    ...++.++++.+++.+...+...+...+..++.    .+.++..+
T Consensus        85 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~  140 (417)
T 2cfq_A           85 VMFAPFFIFIFGPLL--------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEF  140 (417)
T ss_dssp             SCHHHHHHHTHHHHH--------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCH
T ss_pred             HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccch
Confidence            532211   121100                    001233344444443333333333333333210    01234445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhcccccc
Q 045410          185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNL  264 (589)
Q Consensus       185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (589)
                      +..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...|    ++++..+                  .
T Consensus       141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~------------------~  197 (417)
T 2cfq_A          141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSAT------------------V  197 (417)
T ss_dssp             HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSC------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccc------------------c
Confidence            55556678899999999999887 58999988765543322222111111    1100000                  0


Q ss_pred             CCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHH
Q 045410          265 GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITG  344 (589)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  344 (589)
                      .++.     +..+            + ...  .-+...                   .+     ++ +............
T Consensus       198 ~~~~-----~~~~------------~-~~~--~~~~~~-------------------~~-----~~-~~~~~~~~~~~~~  232 (417)
T 2cfq_A          198 ANAV-----GANH------------S-AFS--LKLALE-------------------LF-----RQ-PKLWFLSLYVIGV  232 (417)
T ss_dssp             SSSS-----SSCC------------C-CCC--HHHHHH-------------------HT-----TC-HHHHHHHHHHHHH
T ss_pred             cccc-----cccc------------c-ccc--HHHHHH-------------------Hh-----cC-CchhhHHHHHHHH
Confidence            0000     0000            0 000  000000                   00     00 1111111111111


Q ss_pred             HHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHH
Q 045410          345 IFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILM  424 (589)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l  424 (589)
                      ...+..+.+..+.+...  .......+ ....+....++.+..++...+.+++    .||+++|       +.+..+..+
T Consensus       233 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~l~~~~~~  298 (417)
T 2cfq_A          233 SCTYDVFDQQFANFFTS--FFATGEQG-TRVFGYVTTMGELLNASIMFFAPLI----INRIGGK-------NALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH--TSSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcHH-------HHHHHHHHH
Confidence            11111121111211111  11100000 0001222333334444444554444    6665433       355667766


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH-HHHHHHHH
Q 045410          425 AILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV-FFLSLSIS  503 (589)
Q Consensus       425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg  503 (589)
                      .+++++...+.                 .+.+.++....+.+++.....+..+.+..|.+|++.||++.+. +++.+.+|
T Consensus       299 ~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg  361 (417)
T 2cfq_A          299 MSVRIIGSSFA-----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHHHHHHTTC-----------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence            66665544332                 1333444444555666656666678899999999999999998 48888999


Q ss_pred             HHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 045410          504 SYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSN  566 (589)
Q Consensus       504 ~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~  566 (589)
                      +.+++.+.|.+.+..                 ++...|.+.+++.+++.++.+...++.++.+
T Consensus       362 ~~~gp~l~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          362 MIFMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHTHHHHTHHHHS-----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHhhhhHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            999999999876521                 2456677788887777776665555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.43  E-value=2.7e-12  Score=136.03  Aligned_cols=179  Identities=11%  Similarity=0.018  Sum_probs=149.5

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc--cchHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL--GRFRTLLYGSIA  105 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~l~~~~~~  105 (589)
                      .|.++...+..++..+.++++..+++.|+.+.+|++..+.+++.+...++..++.++.|+++|| +  |||+.+..+.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            4566777778888888889999999999998899999999999999999999999999999999 8  999999888776


Q ss_pred             HH-HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410          106 SF-LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF  184 (589)
Q Consensus       106 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  184 (589)
                      .. ++.+++.+..                   ..+.+.+.+..++.|++.+...+...+++.|.+|+      +.|++.+
T Consensus       330 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~  384 (451)
T 1pw4_A          330 LVTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA  384 (451)
T ss_dssp             HHHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHH
T ss_pred             HHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHH
Confidence            66 5555444432                   01456677777888999888888889999999986      4588899


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410          185 NWWYFSFTV-ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG  232 (589)
Q Consensus       185 ~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~  232 (589)
                      ++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus       385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 999999999999999999999988777766665555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.39  E-value=4.1e-12  Score=134.16  Aligned_cols=166  Identities=11%  Similarity=0.027  Sum_probs=134.1

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVY-LRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      .|.++......++.....+++..+++.| +++.+|++..+.+++.+.+.++..++.+++|+++|| +|||+.+..+.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence            3455666667777777888888999999 888889999999999999999999999999999999 59999999999988


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.++..+..                     +.+.+ ...++.|++.+...|...++..|.+|++       ++.+.++
T Consensus       336 ~~~~~~~~~~~---------------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  386 (438)
T 3o7q_A          336 MALCLISAFAG---------------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_dssp             HHHHHHHHHCC---------------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred             HHHHHHHHHcC---------------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence            88887777754                     33333 3447888999999999999999988852       3344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHH
Q 045410          187 WYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFL  224 (589)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i  224 (589)
                      .. ...+|..++|.+.|++.+..| ++..|++..++.++
T Consensus       387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            43 556999999999999999998 99998876554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.27  E-value=3.2e-11  Score=127.09  Aligned_cols=172  Identities=6%  Similarity=-0.029  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNM---DGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS  106 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~  106 (589)
                      ..+......+.....++....+++.|+.+.++.   +..+.+.+.++..++..++.++.|+++|| +|||+.+..+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHH
Confidence            333333333444445555556788888766653   34556777777778888899999999999 59999999888887


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410          107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW  186 (589)
Q Consensus       107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  186 (589)
                      .++.+.+++..                     +.+.+++..++.+++.+...+....+..|.+|+      +.|++..++
T Consensus       300 ~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~  352 (417)
T 2cfq_A          300 SVRIIGSSFAT---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLV  352 (417)
T ss_dssp             HHHHHHHTTCC---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHH
T ss_pred             HHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHH
Confidence            77766555433                     445566666677777776677778899999986      567787877


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410          187 -WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF  229 (589)
Q Consensus       187 -~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~  229 (589)
                       ++....+|+.++|.++|++.+..|++..|.+.+++.+++.++.
T Consensus       353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~  396 (417)
T 2cfq_A          353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence             4677789999999999999988888888887776666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.05  E-value=4.7e-10  Score=120.33  Aligned_cols=186  Identities=11%  Similarity=-0.009  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHH-----HHH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLL-----YGS  103 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-----~~~  103 (589)
                      ...+.+....++....++.....++.|+.+.++.+..+.+.+.+...+...++.++.|+++|| +|||+...     .+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGL  361 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHH
Confidence            334445556666667777788889999998888887888888899999999999999999999 59987655     667


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410          104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF  183 (589)
Q Consensus       104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  183 (589)
                      ++..++.+++.+......-            ....+.+.++++.++.|++.+...+...+++.|.+|++      .|++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~  423 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM  423 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred             HHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence            7777766666553211000            00114566777788899999999999999999999974      36677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          184 FNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       184 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      .++++...++|..+++.+.+++.+ .++...|.+.+.+.++..++.+...+
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999888765 46666777666655555555444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.02  E-value=1.6e-08  Score=108.18  Aligned_cols=183  Identities=9%  Similarity=-0.021  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410           30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG  109 (589)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~  109 (589)
                      .........++..+..+.......+++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence            33444444444444444445555666677888888888888888888999999999999999 59999999999988888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH-HHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLAL-LAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      .+.++.......                 ..+..++..++ .........|..+.+.+|.||+      +.|++++++.+
T Consensus       356 ~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt------~~R~~~~g~~~  412 (491)
T 4gc0_A          356 MFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAV  412 (491)
T ss_dssp             HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT------TTHHHHHHHHH
T ss_pred             HHHHHHHHhccc-----------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH------hHHHHHHHHHH
Confidence            777665431111                 11222222222 2222233457778999999998      45888999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhh------cchhHhHHHHHHHHHHHHHHHHHhhccc
Q 045410          189 FSFTVALVVALTAVVYIQTN------VSWILGFAIPTGCFFLSIVVFLIGYHTY  236 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~~~  236 (589)
                      ....+|+++++.+.+.+.+.      .++.+.|++.+++.+++.++.++..|+.
T Consensus       413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            88899999988877766432      3455667776666666666655655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.84  E-value=1.5e-09  Score=112.07  Aligned_cols=162  Identities=10%  Similarity=-0.023  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH-HH
Q 045410           29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA-SF  107 (589)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~  107 (589)
                      |..+......++.....+++..+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4556666777788888888888899999988999999999999999999999999999999995 873  2333333 22


Q ss_pred             HHHHH--HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410          108 LGMGI--MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN  185 (589)
Q Consensus       108 ~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  185 (589)
                      ++...  .....                   ..+.+.+++..++.|++.+...+...++..|.+|       +.|++..+
T Consensus       276 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g  329 (375)
T 2gfp_A          276 AGLLMWIPDWFG-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGA  329 (375)
T ss_dssp             TSSSSSHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHH
T ss_pred             HHHHHHHHhhhc-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHH
Confidence            22221  12211                   0145667777888999999999999999999886       24788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHH
Q 045410          186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPT  219 (589)
Q Consensus       186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~  219 (589)
                      +.+...++|..++|.+.+.+.+..++...+.+..
T Consensus       330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999988777877766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.27  E-value=7.4e-06  Score=88.23  Aligned_cols=137  Identities=11%  Similarity=0.098  Sum_probs=95.8

Q ss_pred             cccchhhHHHHHHHHHhhhhHHHHhhhhh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchh
Q 045410          377 GWMGLISMLTLSTWIFFYERVFVPLSQKM-TGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISI  455 (589)
Q Consensus       377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~-~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  455 (589)
                      +++.....++..++.++.+++    .||+ ++|       +.+.++.++.+++.++..+.                +.+.
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~----------------~~~~  109 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWI----ADRFFGKY-------NTILWLSLIYCVGHAFLAIF----------------EHSV  109 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHH----HTTSSCSH-------HHHHHHHHHHHHHHHHHHHT----------------SSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHhcch-------HHHHHHHHHHHHHHHHHHHh----------------cccH
Confidence            334444455555555665554    6665 544       36777888888887776653                1145


Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCC
Q 045410          456 LVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV---FFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDL  532 (589)
Q Consensus       456 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~  532 (589)
                      +.++...++.|++.+...+...+++.|.+|++.|+++.+.   .+....+|..+++.+.+.+.+..      +       
T Consensus       110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g-------  176 (524)
T 2xut_A          110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G-------  176 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C-------
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-------
Confidence            5667778889999999999999999999999999877776   88888899999998887776421      1       


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH
Q 045410          533 NKDTLDYFYFTIAALEVVNLLYFNF  557 (589)
Q Consensus       533 ~~~~~~~~f~~~a~~~~~~~~~~~~  557 (589)
                          ..+.|++.+++.++..++++.
T Consensus       177 ----~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          177 ----AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                345677776666665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	589
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.32
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.8e-27  Score=246.17  Aligned_cols=178  Identities=14%  Similarity=0.014  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHhHhh---hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHH
Q 045410           32 KYILGNETFEKLASMS---LIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFL  108 (589)
Q Consensus        32 ~~~~~~~~~~~~~~~~---~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~  108 (589)
                      |.++...++..+..|.   ..+.+.+++. ++|+|.+|.|++.+++.++..++.+++|+++||+ |||++++++.++.++
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3444444444444442   3455666776 5899999999999999999999999999999995 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410          109 GMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY  188 (589)
Q Consensus       109 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  188 (589)
                      +.++++++.....                 +.+.++++|++.|++.+...+...+++.|.+|+      ++|++.+++++
T Consensus       102 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~  158 (447)
T d1pw4a_         102 VMLFMGFVPWATS-----------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWN  158 (447)
T ss_dssp             HHHHHHHCHHHHS-----------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHH
T ss_pred             HHhhccccchhhh-----------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh------hcccccccccc
Confidence            9998887542211                 456799999999999999999999999999986      46888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-chhHhHHHHHHHHHHHHHHHHHhhc
Q 045410          189 FSFTVALVVALTAVVYIQTNV-SWILGFAIPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       189 ~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~  234 (589)
                      .+.++|..+++.+++.+.... +||+.|++.+.+.++..++.+...+
T Consensus       159 ~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         159 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             cccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            999999999999888776654 7999998877766655555444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.5e-23  Score=213.99  Aligned_cols=397  Identities=12%  Similarity=-0.011  Sum_probs=229.2

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|..|.+....|+..+++....++++.|+++++|+|+++.|++.+++.++..+++++.|+++||+ ||||+++++.++..
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            45667777778888888777888999999999999999999999999999999999999999995 99999999999888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      ++...+.+..+.+.                 .....+..+.+.+.+.+...........+..++.    .+++....+..
T Consensus        85 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  143 (417)
T d1pv7a_          85 VMFAPFFIFIFGPL-----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA  143 (417)
T ss_dssp             HTHHHHHHHTHHHH-----------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred             HHHHHHHHhhhhhh-----------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence            88888777551111                 1122334444444444444444444433333221    12333455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccccccCCC
Q 045410          188 YFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNLGQA  267 (589)
Q Consensus       188 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (589)
                      ......+..+++.+++.+.+. +|+..+........+..++..+..++.+..+.+.++.             +.  ..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~  207 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV-------------GA--NHSA  207 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH-------------HS--CCCC
T ss_pred             hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh-------------hh--hccc
Confidence            667788889999998888774 4555555544443333333333222211111110000             00  0000


Q ss_pred             CCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHH
Q 045410          268 SGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFC  347 (589)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  347 (589)
                                               ..  .......                   ..  ............   ......
T Consensus       208 -------------------------~~--~~~~~~~-------------------~~--~~~~~~~~~~~~---~~~~~~  236 (417)
T d1pv7a_         208 -------------------------FS--LKLALEL-------------------FR--QPKLWFLSLYVI---GVSCTY  236 (417)
T ss_dssp             -------------------------CC--HHHHHHH-------------------TT--SSHHHHHHHHHH---HHHHHH
T ss_pred             -------------------------cc--ccccccc-------------------cc--cccccchhhhhH---HHHHHH
Confidence                                     00  0000000                   00  000011111111   111111


Q ss_pred             HHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHH
Q 045410          348 FLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAIL  427 (589)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i  427 (589)
                      .. ........  .......... .............+...+...+    ..++.+|.+       +.+.+.++.++.++
T Consensus       237 ~~-~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~~-------~~~~~~~~~~~~~~  301 (417)
T d1pv7a_         237 DV-FDQQFANF--FTSFFATGEQ-GTRVFGYVTTMGELLNASIMFF----APLIINRIG-------GKNALLLAGTIMSV  301 (417)
T ss_dssp             HH-HHHHHHHH--HTTSSSCHHH-HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHC-------HHHHHHHHHHHHHH
T ss_pred             Hh-hhcccccc--cccccccccc-chhhhcccccccccccccchhh----hhhhhcccc-------cccchhhhHHHHHH
Confidence            11 11001100  0000000000 0000111122222222333333    344456653       33467778887777


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHH-HHHHHHHHHH
Q 045410          428 SLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVF-FLSLSISSYI  506 (589)
Q Consensus       428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~l  506 (589)
                      +++++.+.                 .+.+.+++..++.+++.+...+..+.+..|.+|++.|+++.++. ++...+|..+
T Consensus       302 ~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  364 (417)
T d1pv7a_         302 RIIGSSFA-----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             HHHHHHTC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred             hhhccccc-----------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            77766553                 25556677788889999999999999999999999999999975 5667899999


Q ss_pred             HHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 045410          507 NSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRF  562 (589)
Q Consensus       507 ~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~  562 (589)
                      ++.+.|.+.|..                 ++...|++.+++.++..++.++..++.
T Consensus       365 ~~~~~G~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         365 MSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999888643                 245678888888888777777665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.2e-11  Score=127.79  Aligned_cols=180  Identities=12%  Similarity=0.000  Sum_probs=138.9

Q ss_pred             chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410           28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF  107 (589)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  107 (589)
                      .|..+......++.....+++..+++.|+.+.++.+..+.+...+...+...++.+++|+++|| ++|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence            4566667777888888889999999999999999999999999999999999999999999999 498765555544443


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH
Q 045410          108 LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW  187 (589)
Q Consensus       108 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  187 (589)
                      +...........+                ..+.+..++..++.|++.+...+....+..|.+|+      +.|+++.++.
T Consensus       327 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~  384 (447)
T d1pw4a_         327 LVTIATIVYWMNP----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFT  384 (447)
T ss_dssp             HHHHHHHHTTSCC----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHHHHH
T ss_pred             HHHHHHHHHHhcc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHH
Confidence            3333333221111                12566677777888999888889999999999986      4578888988


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHH
Q 045410          188 YFSFTV-ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFL  230 (589)
Q Consensus       188 ~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~  230 (589)
                      +...++ |.+++|.+.+++.+.+||+..|++...+.+++.++..
T Consensus       385 ~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            877776 5677899999999999999988876665555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.6e-12  Score=130.34  Aligned_cols=149  Identities=7%  Similarity=-0.036  Sum_probs=124.9

Q ss_pred             HhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc
Q 045410           58 TKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEG  137 (589)
Q Consensus        58 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  137 (589)
                      +..+.+....+.......++..++.++.|++.||+ |||+.+.++.++..++.+.+.+..                    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------  310 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------------------  310 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc--------------------
Confidence            44566777888888899999999999999999994 999999999999998888888765                    


Q ss_pred             hhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHhHH
Q 045410          138 WQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWW-YFSFTVALVVALTAVVYIQTNVSWILGFA  216 (589)
Q Consensus       138 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  216 (589)
                       +.+.+++..++.|++.+...+...+++.|.+|+      +.|++.+++. .....+|..++|.+.|++.+.+|++..|+
T Consensus       311 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence             667788888899999999999999999999987      4577888874 45667999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 045410          217 IPTGCFFLSIVVFLIGYH  234 (589)
Q Consensus       217 ~~~~~~~i~~~~~~~~~~  234 (589)
                      +.+++.++..++.++..+
T Consensus       384 ~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         384 VLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            877766666555555433