Citrus Sinensis ID: 045470

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDGPLISVRGGGGICGSAIT
ccccccccccccccccccccccccccccccccccEEEEcEEEEEEcccccEEEEEEcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccEEEEEEEccccccccccccccccEEEccccccccccc
ccccHccHHcccccHccHHHHHHccccccccccEEEEccEEEEEEcccccEEEEEEcccHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccEEEEEEEEccccEcccccccccEEEEccccccccccc
ISRSIGDAYLkkaefnrepllpkfrlpepfhkpillaeptvsvqrlypedqfLIFASDglwehlsnqeavdivhncprngVARKLVKAALHEAAKKREMRYSDLKkidrgvrrhfhdDITVIILFLDSYLisrsswdgplisvrggggicgsait
isrsigdaylkkaefnrepllpkfRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEaakkremrysdlkkidrgvrrhfhdDITVIILFLDSYLISRSswdgplisvrggggicgsait
ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDGPLISVRGGGGICGSAIT
******************PLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDGPLISVRGGGGICG****
ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGV**********EAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFL*****************************
ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDGPLISVRGGGGICGSAIT
**RSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSW*GPLI**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSSWDGPLISVRGGGGICGSAIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query155 2.2.26 [Sep-21-2011]
Q9LHJ9385 Probable protein phosphat yes no 0.974 0.392 0.788 4e-68
Q5Z8P0392 Probable protein phosphat yes no 0.948 0.375 0.783 3e-64
Q94CL8384 Probable protein phosphat no no 0.922 0.372 0.748 2e-60
Q10S32399 Probable protein phosphat no no 0.948 0.368 0.716 5e-59
Q5PNS9400 Probable protein phosphat no no 0.948 0.367 0.722 5e-59
Q9FKX4385 Probable protein phosphat no no 0.948 0.381 0.722 4e-58
Q9SD12379 Probable protein phosphat no no 0.935 0.382 0.714 2e-57
Q7XCJ7393 Probable protein phosphat no no 0.948 0.374 0.687 2e-57
Q501F9370 Probable protein phosphat no no 0.935 0.391 0.719 3e-52
Q7Y138386 Probable protein phosphat no no 0.929 0.373 0.631 2e-49
>sp|Q9LHJ9|P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1 Back     alignment and function desciption
 Score =  256 bits (653), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 137/151 (90%)

Query: 1   ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
           +SRSIGDAYLKKAEFNREPLL KFR+PE FHKPIL AEP ++V +++PEDQFLIFASDGL
Sbjct: 232 VSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGL 291

Query: 61  WEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDIT 120
           WEHLSNQEAVDIV+ CPRNG+ARKL+K AL EAAKKREMRYSDLKKIDRGVRRHFHDDIT
Sbjct: 292 WEHLSNQEAVDIVNTCPRNGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDIT 351

Query: 121 VIILFLDSYLISRSSWDGPLISVRGGGGICG 151
           VI++FLDS+L+SRS+   PL+S+ GGG + G
Sbjct: 352 VIVVFLDSHLVSRSTSRRPLLSISGGGDLAG 382

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q5Z8P0|P2C60_ORYSJ Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1 Back     alignment and function description
>sp|Q94CL8|P2C48_ARATH Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1 Back     alignment and function description
>sp|Q10S32|P2C28_ORYSJ Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1 Back     alignment and function description
>sp|Q5PNS9|P2C64_ARATH Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKX4|P2C79_ARATH Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1 Back     alignment and function description
>sp|Q9SD12|P2C46_ARATH Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1 Back     alignment and function description
>sp|Q7XCJ7|P2C72_ORYSJ Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1 Back     alignment and function description
>sp|Q501F9|P2C67_ARATH Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y138|P2C36_ORYSJ Probable protein phosphatase 2C 36 OS=Oryza sativa subsp. japonica GN=Os03g0832400 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
224109644 386 predicted protein [Populus trichocarpa] 1.0 0.401 0.838 1e-71
118482621 270 unknown [Populus trichocarpa] 1.0 0.574 0.838 2e-71
224100889 386 predicted protein [Populus trichocarpa] 1.0 0.401 0.838 1e-70
449451695 389 PREDICTED: probable protein phosphatase 0.961 0.383 0.852 2e-70
225448757 385 PREDICTED: probable protein phosphatase 1.0 0.402 0.8 2e-66
42564100 385 putative protein phosphatase 2C 38 [Arab 0.974 0.392 0.788 3e-66
312283243 387 unnamed protein product [Thellungiella h 1.0 0.400 0.774 3e-66
12321955 376 protein phosphatase 2C, putative; 16828- 0.974 0.401 0.788 4e-66
297834066 386 phosphatase 2C family protein [Arabidops 0.974 0.391 0.774 2e-65
218198894 392 hypothetical protein OsI_24486 [Oryza sa 0.948 0.375 0.783 2e-62
>gi|224109644|ref|XP_002315265.1| predicted protein [Populus trichocarpa] gi|222864305|gb|EEF01436.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 144/155 (92%)

Query: 1   ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
           ISRSIGDAYLK+AE+NREPLL KFRLPEPF+KPIL AEPT+ VQ+LYPEDQFLIFASDGL
Sbjct: 232 ISRSIGDAYLKRAEYNREPLLAKFRLPEPFNKPILKAEPTILVQKLYPEDQFLIFASDGL 291

Query: 61  WEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDIT 120
           WEHLSNQEAVD VH+CPRNGVARKL+KAAL EAAKKREMRYSDLKKIDRGVRRHFHDDIT
Sbjct: 292 WEHLSNQEAVDFVHSCPRNGVARKLLKAALREAAKKREMRYSDLKKIDRGVRRHFHDDIT 351

Query: 121 VIILFLDSYLISRSSWDGPLISVRGGGGICGSAIT 155
           VI+LFLDS L+SRSS+ GPLIS++GG G+ G+  T
Sbjct: 352 VIVLFLDSNLVSRSSFRGPLISIKGGYGVSGNGNT 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118482621|gb|ABK93230.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100889|ref|XP_002312054.1| predicted protein [Populus trichocarpa] gi|222851874|gb|EEE89421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451695|ref|XP_004143597.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] gi|449509006|ref|XP_004163467.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225448757|ref|XP_002281610.1| PREDICTED: probable protein phosphatase 2C 38 [Vitis vinifera] gi|297736452|emb|CBI25323.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|42564100|ref|NP_187868.2| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|79313205|ref|NP_001030682.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|75273276|sp|Q9LHJ9.1|P2C38_ARATH RecName: Full=Probable protein phosphatase 2C 38; Short=AtPP2C38 gi|9294356|dbj|BAB02253.1| protein phosphatase 2C [Arabidopsis thaliana] gi|28466963|gb|AAO44090.1| At3g12620 [Arabidopsis thaliana] gi|110735750|dbj|BAE99854.1| hypothetical protein [Arabidopsis thaliana] gi|222424096|dbj|BAH20008.1| AT3G12620 [Arabidopsis thaliana] gi|222424228|dbj|BAH20072.1| AT3G12620 [Arabidopsis thaliana] gi|332641703|gb|AEE75224.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|332641704|gb|AEE75225.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312283243|dbj|BAJ34487.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|12321955|gb|AAG51012.1|AC069474_11 protein phosphatase 2C, putative; 16828-18284 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834066|ref|XP_002884915.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] gi|297330755|gb|EFH61174.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218198894|gb|EEC81321.1| hypothetical protein OsI_24486 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
TAIR|locus:2091265385 AT3G12620 [Arabidopsis thalian 0.974 0.392 0.788 5.4e-63
TAIR|locus:2097238384 AT3G55050 [Arabidopsis thalian 0.922 0.372 0.755 3.3e-56
TAIR|locus:2151256370 AT5G02760 [Arabidopsis thalian 0.935 0.391 0.719 2.6e-54
TAIR|locus:2121234400 AT4G38520 [Arabidopsis thalian 0.948 0.367 0.722 3.4e-54
TAIR|locus:2156877385 AT5G66080 [Arabidopsis thalian 0.948 0.381 0.722 1.5e-53
TAIR|locus:2081770379 AT3G51370 [Arabidopsis thalian 0.935 0.382 0.714 4.9e-53
TAIR|locus:2086097384 AT3G17090 [Arabidopsis thalian 0.929 0.375 0.619 3.8e-46
TAIR|locus:2118899380 AT4G33920 [Arabidopsis thalian 0.870 0.355 0.592 1.6e-40
TAIR|locus:2170234393 AT5G06750 [Arabidopsis thalian 0.935 0.368 0.544 8.7e-40
TAIR|locus:2083539650 PLL3 "pol-like 3" [Arabidopsis 0.858 0.204 0.366 6.2e-17
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 119/151 (78%), Positives = 137/151 (90%)

Query:     1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
             +SRSIGDAYLKKAEFNREPLL KFR+PE FHKPIL AEP ++V +++PEDQFLIFASDGL
Sbjct:   232 VSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGL 291

Query:    61 WEHLSNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDIT 120
             WEHLSNQEAVDIV+ CPRNG+ARKL+K AL EAAKKREMRYSDLKKIDRGVRRHFHDDIT
Sbjct:   292 WEHLSNQEAVDIVNTCPRNGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDIT 351

Query:   121 VIILFLDSYLISRSSWDGPLISVRGGGGICG 151
             VI++FLDS+L+SRS+   PL+S+ GGG + G
Sbjct:   352 VIVVFLDSHLVSRSTSRRPLLSISGGGDLAG 382
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA
TAIR|locus:2097238 AT3G55050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151256 AT5G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121234 AT4G38520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081770 AT3G51370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086097 AT3G17090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118899 AT4G33920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170234 AT5G06750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083539 PLL3 "pol-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z8P0P2C60_ORYSJ3, ., 1, ., 3, ., 1, 60.78370.94830.375yesno
Q9LHJ9P2C38_ARATH3, ., 1, ., 3, ., 1, 60.78800.97410.3922yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 8e-24
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 1e-21
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 3e-15
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-09
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 1e-05
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score = 92.8 bits (231), Expect = 8e-24
 Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 46/130 (35%)

Query: 1   ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
           ++R++GD  LK                     P + AEP V+V +L  +D FLI ASDGL
Sbjct: 167 VTRALGDFDLK---------------------PGVSAEPDVTVVKLTEDDDFLILASDGL 205

Query: 61  WEHLSNQEAVDIVHNCPRNG----VARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFH 116
           W+ LSNQEAVDIV +          A++LV  AL                     RR  H
Sbjct: 206 WDVLSNQEAVDIVRSELAKEDLQEAAQELVDLAL---------------------RRGSH 244

Query: 117 DDITVIILFL 126
           D+ITV+++ L
Sbjct: 245 DNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 155
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.94
KOG0698330 consensus Serine/threonine protein phosphatase [Si 99.85
PLN03145365 Protein phosphatase 2c; Provisional 99.84
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 99.82
PTZ00224381 protein phosphatase 2C; Provisional 99.8
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.75
KOG0699542 consensus Serine/threonine protein phosphatase [Si 99.72
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.64
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.55
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.54
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.51
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.41
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.15
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.0
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 98.12
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 98.0
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 97.59
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 96.8
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 96.19
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=99.94  E-value=2.2e-27  Score=197.56  Aligned_cols=103  Identities=56%  Similarity=0.883  Sum_probs=98.3

Q ss_pred             CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHc-----
Q 045470            1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN-----   75 (155)
Q Consensus         1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~-----   75 (155)
                      +||||||..||++.+++++++++|+.+.++++||++|+|+|++++|+++|+|||||||||||+|++||++.+|..     
T Consensus       281 vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~  360 (390)
T KOG0700|consen  281 VSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK  360 (390)
T ss_pred             eeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             CCcchHHHHHHHHHHHHHHHhhhhhhhc
Q 045470           76 CPRNGVARKLVKAALHEAAKKREMRYSD  103 (155)
Q Consensus        76 ~~~~~~a~~L~~~a~~~~a~~~~~~~~~  103 (155)
                      .+++++|++|++.|+.++++++.+++.+
T Consensus       361 ~pd~~~A~hLIr~aL~~aakk~~~r~s~  388 (390)
T KOG0700|consen  361 FPDGNPATHLIRHALGRAAKKRGMRLSD  388 (390)
T ss_pred             CCCCCHHHHHHHHHHhhhhhhccccHhh
Confidence            7788999999999999999987777654

>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 1e-08
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 4e-08
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 7e-06
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 7e-06
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 7e-06
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 7e-06
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 7e-06
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 7e-06
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 7e-06
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 8e-05
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 8e-05
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 9e-05
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 39/148 (26%)
Query: 23  KFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIV--------H 74
           KF  P  +  P L AEP V+  RL P+D+FL+ A+DGLWE +  Q+ V IV        H
Sbjct: 312 KFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHH 371
Query: 75  NCPRNGVARKLVKAALHEAAKKREM-------------------------------RYSD 103
             P      K+    +H    +R                                 R S 
Sbjct: 372 QQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSK 431
Query: 104 LKKIDRGVRRHFHDDITVIILFLDSYLI 131
           +  +   + R + DDIT+I++  +S+++
Sbjct: 432 MLSLPEELARMYRDDITIIVVQFNSHVV 459
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 7e-36
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 2e-34
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 4e-23
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 1e-22
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 7e-22
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 2e-21
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 4e-21
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 2e-20
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 3e-20
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 5e-20
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 8e-20
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 8e-19
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 2e-05
1txo_A237 Putative bacterial enzyme; serine/threonine protei 2e-05
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 3e-05
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 2e-04
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
 Score =  127 bits (321), Expect = 7e-36
 Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 51/186 (27%)

Query: 1   ISRSIGDAYLK------------KAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYP 48
             R+ GD   K              +   +    KF  P     P L AEP V+  RL P
Sbjct: 278 PFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRP 337

Query: 49  EDQFLIFASDGLWEHLSNQEAVDIVHNC-------------------------------- 76
           +D+FL+ A+DGLWE +  Q+ V IV                                   
Sbjct: 338 QDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAK 397

Query: 77  -----PRNGVARKLVKAALH--EAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSY 129
                     A  L++ A+   E       R S +  +   + R + DDIT+I++  +S+
Sbjct: 398 MSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSH 457

Query: 130 LISRSS 135
           ++    
Sbjct: 458 VVGAYQ 463
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query155
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.89
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 99.85
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 99.84
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.83
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.82
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.81
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 99.81
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 99.81
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 99.8
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 99.8
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.79
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.79
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.76
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.68
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.66
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.65
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.65
3rnr_A211 Stage II sporulation E family protein; structural 99.54
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 98.77
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 98.57
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 98.53
3f79_A255 Probable two-component response regulator; adaptor 98.33
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 97.68
3eq2_A394 Probable two-component response regulator; adaptor 95.56
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=99.89  E-value=2.7e-24  Score=184.28  Aligned_cols=131  Identities=31%  Similarity=0.518  Sum_probs=86.2

Q ss_pred             Ccccccchhccccc----------cCC--CCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHH
Q 045470            1 ISRSIGDAYLKKAE----------FNR--EPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQE   68 (155)
Q Consensus         1 vSRAlGD~~~K~~~----------~~~--~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~e   68 (155)
                      |||||||+.+|++.          ++.  ...+.++..+.+.++|+|+++|||..+++.++|+|||||||||||+|+++|
T Consensus       278 vtRAlGd~~~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~e  357 (467)
T 2pnq_A          278 PFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQD  357 (467)
T ss_dssp             SSBCEECGGGTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHH
T ss_pred             cchhcCchhhcccchhhhhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChHH
Confidence            69999999999742          110  011235566677889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC-------------------------------------cchHHHHHHHHHHHHHHHhhhhh---hhcccccc
Q 045470           69 AVDIVHNCP-------------------------------------RNGVARKLVKAALHEAAKKREMR---YSDLKKID  108 (155)
Q Consensus        69 i~~~i~~~~-------------------------------------~~~~a~~L~~~a~~~~a~~~~~~---~~~~~~~~  108 (155)
                      +++++....                                     .+.+|.+|++.|+..+ +..+++   ...+..++
T Consensus       358 iv~iv~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~-~~Ge~~~~~~~~ll~~~  436 (467)
T 2pnq_A          358 VVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNN-EFGAVDHERLSKMLSLP  436 (467)
T ss_dssp             HHHHHHHHHTTCSSCC-------------------------------CCHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHHHhhccccCcccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCC-CcCcchHHHHHhhhcCC
Confidence            999996531                                     1567899999998764 111122   23456678


Q ss_pred             ccccCccCCceEEEEEEeCCcccc
Q 045470          109 RGVRRHFHDDITVIILFLDSYLIS  132 (155)
Q Consensus       109 ~~~~~g~~DNiTvivv~l~~~~~~  132 (155)
                      +..+|.++|||||+||+|+.+.+.
T Consensus       437 ~~~~R~~~DdITViVv~~~~~~~~  460 (467)
T 2pnq_A          437 EELARMYRDDITIIVVQFNSHVVG  460 (467)
T ss_dssp             ------CCSCEEEEEEEECHHHHH
T ss_pred             ccccccCCCCcEEEEEEeCchHhh
Confidence            888899999999999999875544
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 155
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 2e-15
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 1e-09
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-15
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 37/133 (27%)

Query: 1   ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
           +SR++GD   K               PE              ++R   +DQF+I A DG+
Sbjct: 192 VSRALGDFDYKCVHGKGPTEQLVSPEPEVHD-----------IERSEEDDQFIILACDGI 240

Query: 61  WEHLSNQEAVDIVHNCPRNG-----VARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHF 115
           W+ + N+E  D V +          V  ++V   L                      +  
Sbjct: 241 WDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCL---------------------YKGS 279

Query: 116 HDDITVIILFLDS 128
            D+++VI++   +
Sbjct: 280 RDNMSVILICFPN 292
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query155
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 99.87
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.7
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.5e-23  Score=162.73  Aligned_cols=97  Identities=27%  Similarity=0.440  Sum_probs=80.4

Q ss_pred             CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcC-CCCeEEEEeeCCCCccCCHHHHHHHHHcC---
Q 045470            1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLY-PEDQFLIFASDGLWEHLSNQEAVDIVHNC---   76 (155)
Q Consensus         1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~-~~d~flILaSDGLwd~l~~~ei~~~i~~~---   76 (155)
                      |||||||+.+|..+..            ..+.++|+++||+..+++. ++|+|||||||||||+|+++|++++++..   
T Consensus       192 ~tRa~Gd~~~k~~~~~------------~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~  259 (295)
T d1a6qa2         192 VSRALGDFDYKCVHGK------------GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEV  259 (295)
T ss_dssp             CSBCEECGGGSCCTTC------------CGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTT
T ss_pred             eeeccCcHHhhhcccc------------CcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhc
Confidence            6999999999976522            2455789999999999987 56779999999999999999999999753   


Q ss_pred             --CcchHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCcc
Q 045470           77 --PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYL  130 (155)
Q Consensus        77 --~~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~~  130 (155)
                        ..+.+|+.|++.|+.                     +++.||||||||+|+..+
T Consensus       260 ~~~~~~~a~~Lv~~A~~---------------------~gs~DNiTvivv~~~~~~  294 (295)
T d1a6qa2         260 TDDLEKVCNEVVDTCLY---------------------KGSRDNMSVILICFPNAP  294 (295)
T ss_dssp             CCCHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEECTTSC
T ss_pred             CCCHHHHHHHHHHHHHh---------------------cCCCCCeEEEEEeccCCC
Confidence              235678888888863                     678999999999997653
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure