Citrus Sinensis ID: 045481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWTLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccEccc
Coil and Loop (DISEMBL)
iskipkknnlqvTFSKRRAGVFKKASELSTLCGVDIalivfspankafsfghpnvDSILDLYlarnpnppsesstdRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCwweapinelglHELEQLKTAMEELKKNVEQQANKILidsknnpspffglgfwtls
Flexible Loop (DISEMBL)
iskipkknnlqvtfskrragvfkKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANkilidsknnpspfFGLGFWTLS
Low Complexity Region (SEG)
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWTLS
Disordered region (IsUnstruct)
*****************RAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLA*********************NIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLK****************ILI*******PFFGLGFWT**
Disordered Region (DISOPRED)
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLAR*********************IRELNMQLTQVL********************CRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFW***
Disordered Region (DISEMBL)
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN********RLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWTLS
Disordered Region (DISPRO)
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWTLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPNPPSESSTDRLIEAHRxxxxxxxxxxxxxxxxxxxxxKKHGEVLSEIRKASCRQCWWEAPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxILIDSKNNPSPFFGLGFWTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.881	0.521	0.515	8e-40
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.813	0.545	0.516	4e-37
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.762	0.509	0.337	7e-13
Q9XJ66	228	MADS-box transcription fa	no	no	0.548	0.425	0.388	3e-12
Q6VAM4	159	MADS-box transcription fa	no	no	0.779	0.867	0.277	5e-12
O82794	220	MADS-box protein AGL24 OS	no	no	0.401	0.322	0.506	1e-11
Q9FVC1	240	MADS-box protein SVP OS=A	no	no	0.785	0.579	0.308	1e-11
P40791	540	Myocyte-specific enhancer	yes	no	0.474	0.155	0.453	2e-11
Q40704	236	MADS-box transcription fa	no	no	0.790	0.593	0.303	2e-11
Q69TG5	245	MADS-box transcription fa	no	no	0.327	0.236	0.517	3e-11

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 3   KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
           K+  ++NLQVTFSKRR+G+FKKASEL TLCG ++A++VFSP  K FSFGHPNVDS++D +
Sbjct: 15  KMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRF 74

Query: 63  LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIR-KASCRQ 121
           +  NP PP + +  +L E  RN+ +++LN  LTQVL QLE EKK  + L +IR K     
Sbjct: 75  INNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALG 134

Query: 122 CWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 158
            WWE P+ EL L +LE  K  +E LKK V  +A++  
Sbjct: 135 NWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF 171

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  154 bits (388), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 110/151 (72%), Gaps = 7/151 (4%)

Query: 3   KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
           KI K+++ QVTFSKRRAG+FKKASEL TLCG +I +IVFSPA K FSFGHP+V+S+LD Y
Sbjct: 71  KIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRY 130

Query: 63  LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQC 122
           ++RN    ++S     ++    A+  ELNMQLT +L ++E EKK G+ + E+RK S R+ 
Sbjct: 131 VSRNNMSLAQSQQ---LQGSPAASC-ELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRS 186

Query: 123 ---WWEAPINELGLHELEQLKTAMEELKKNV 150
              WWE P+ E+ + +L+++K A+EEL+K V
Sbjct: 187 MINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 28/163 (17%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSIL- 59
           I KI      QVTFSKRR G+FKKA ELS LC  D+ALI+FS   K F +   ++  IL 
Sbjct: 8   IKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILE 67

Query: 60  --DLYLARNPNPPSESSTD-RLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRK 116
             DL+ ++N     + S + +L+E   N+N   L+ ++++  H+L               
Sbjct: 68  RRDLH-SKNLEKLDQPSLELQLVE---NSNYSRLSKEISEKSHRL--------------- 108

Query: 117 ASCRQCWWEAPINELGLHELEQLKTAMEE-LKKNVEQQANKIL 158
              RQ   E  +  L + EL+QL+ ++E  L + +E++ +KI+
Sbjct: 109 ---RQMRGE-ELQGLNIEELQQLERSLETGLSRVIERKGDKIM 147

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I +I      QVTFSKRR G+FKKA ELS LC  D+ALIVFS   K   F   +++ I+D
Sbjct: 8   IKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIID 67

Query: 61  LY------LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQV 97
            Y      L +   P  + + +    AH N  + E +++L Q+
Sbjct: 68  KYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQM 110

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 24/162 (14%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I +I    + QVTFSKRR+G+FKKA ELS LC  ++ L+VFS  ++ + F   ++ SI++
Sbjct: 8   IKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIE 67

Query: 61  LY--LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKAS 118
            Y     +P+    +S++  +     A++R       Q LH L  ++ H ++L +     
Sbjct: 68  RYNETKEDPHQTMNASSEAKLWQQEAASLR-------QQLHNL--QEYHRQLLGQ----- 113

Query: 119 CRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID 160
                    ++ L + +L+ L++ +E   KN+  + + +++D
Sbjct: 114 --------QLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMD 147

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I KI      QVTFSKRR G+FKKA ELS LC  D+ALI+FS   K F F    +  IL 
Sbjct: 8  IKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSRMRDILG 67

Query: 61 LYL--ARNPN----PPS 71
           Y   A N N    PPS
Sbjct: 68 RYSLHASNINKLMDPPS 84

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 20/159 (12%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I KI      QVTFSKRR G+FKKA ELS LC  D+ALI+FS   K F F   ++  +L+
Sbjct: 8   IRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLE 67

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            +  ++ N          ++   N++   ++ ++    H+L                  R
Sbjct: 68  RHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRL------------------R 109

Query: 121 QCWWEAPINELGLHELEQLKTAMEE-LKKNVEQQANKIL 158
           Q   E  +  L + EL+QL+ A+E  L + +E +++KI+
Sbjct: 110 QMRGE-ELQGLDIEELQQLEKALETGLTRVIETKSDKIM 147

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P40791|MEF2_DROME Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          IS+I  + N QVTF+KR+ GV KKA ELS LC  +IALI+FS +NK + +   ++D +L 
Sbjct: 8  ISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLL 67

Query: 61 LYLARNPNPPSESSTDRLIEAHRNAN 86
           Y     N P ES T++ I    N N
Sbjct: 68 KYTEY--NEPHESLTNKNIIEKENKN 91

Transcription factor that could be a key player in early mesoderm differentiation and may be required for subsequent cell fate specifications within the somatic and visceral/heart mesodermal layers.

Drosophila melanogaster (taxid: 7227)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 18/158 (11%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I +I    N QVTF KRR G+ KKA ELS LC  ++ALIVFS   + + + + +V S ++
Sbjct: 8   IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVE 67

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            Y   N +  S S T           + E+N Q     H  +   K  + +S ++ A+ R
Sbjct: 68  RYKKANSD-TSNSGT-----------VAEVNAQ-----HYQQESSKLRQQISSLQNANSR 110

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 158
               ++ IN + L +L+Q++  +E+    +  + N++L
Sbjct: 111 TIVGDS-INTMSLRDLKQVENRLEKGIAKIRARKNELL 147

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 38/58 (65%)

Query: 11 QVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN 68
          QVTFSKRR G+FKKA EL+ LC  D+AL+VFS   K   F   N++ I+D Y   + N
Sbjct: 18 QVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKN 75

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
224103801	217	predicted protein [Populus trichocarpa]	0.881	0.718	0.707	2e-59
255562152	226	mads box protein, putative [Ricinus comm	0.903	0.707	0.714	4e-59
225429161	214	PREDICTED: agamous-like MADS-box protein	0.937	0.775	0.674	7e-59
356574345	226	PREDICTED: agamous-like MADS-box protein	0.960	0.752	0.634	3e-56
449465111	228	PREDICTED: agamous-like MADS-box protein	0.966	0.75	0.630	4e-56
356534256	226	PREDICTED: agamous-like MADS-box protein	0.960	0.752	0.634	4e-56
357462355	207	Agamous-like MADS-box protein AGL62 [Med	0.966	0.826	0.603	5e-56
224103797	216	predicted protein [Populus trichocarpa]	0.909	0.745	0.633	7e-55
225429167	213	PREDICTED: agamous-like MADS-box protein	0.937	0.779	0.601	4e-53
255562154	217	mads box protein, putative [Ricinus comm	0.875	0.714	0.630	4e-53

>gi|224103801|ref|XP_002313198.1| predicted protein [Populus trichocarpa] gi|222849606|gb|EEE87153.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/157 (70%), Positives = 135/157 (85%), Gaps = 1/157 (0%)

Query: 8   NNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNP 67
           N+LQVTFSKRRAG+FKKASEL TLCGVDIA++VFSPA+KAFSFGHP+VDSI+D +L RN 
Sbjct: 22  NHLQVTFSKRRAGLFKKASELCTLCGVDIAILVFSPAHKAFSFGHPDVDSIMDRFLTRNA 81

Query: 68  NPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAP 127
            PP  S T +LIEAHRNAN+RE NMQLTQ+L+QLE EK+H E L+++RK+S  QCWWEAP
Sbjct: 82  -PPQSSGTHQLIEAHRNANVREHNMQLTQILNQLEAEKRHSETLNQMRKSSRSQCWWEAP 140

Query: 128 INELGLHELEQLKTAMEELKKNVEQQANKILIDSKNN 164
           + ELGL ELEQL+ A+EELKK + +Q NKILI+S N+
Sbjct: 141 VEELGLQELEQLRDALEELKKRLTKQTNKILIESSNS 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562152|ref|XP_002522084.1| mads box protein, putative [Ricinus communis] gi|223538683|gb|EEF40284.1| mads box protein, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/161 (71%), Positives = 138/161 (85%), Gaps = 1/161 (0%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I KI KK +LQVTFSKRRAG+FKKASEL TLCGV+IA++VFSPANKAFSFGHP V+S+LD
Sbjct: 33  IEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHPEVESVLD 92

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            +LAR+P P S SS  +LIEAHRNAN+ ELNMQLT  L+Q+E EKK GE+L +IRK+S  
Sbjct: 93  RFLARHPLPTS-SSAHQLIEAHRNANVCELNMQLTHTLNQMEDEKKKGELLDQIRKSSQN 151

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 161
            CWWEAPI+ELG+HELEQL+ A+EELKKNV +Q +KILI+S
Sbjct: 152 MCWWEAPIDELGMHELEQLRFALEELKKNVTKQISKILINS 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 141/169 (83%), Gaps = 3/169 (1%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           ISKIPKKN+LQVTFSKRR+G+FKKASEL TLCG ++A+IVFSPA K FSFGHP+V+SI+D
Sbjct: 14  ISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVFSFGHPDVESIVD 73

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            +   NP P  E +   LIEAHRNA++RELN+QLTQVL+QLE EKK GE+LS++R+AS  
Sbjct: 74  RFFTCNPIP--EPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGEILSQMRRASQT 131

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFF 169
           QCWWEAPINEL + ELEQLK +MEELKK V  Q +K+L+++  NPSPF+
Sbjct: 132 QCWWEAPINELSMPELEQLKVSMEELKKVVLSQGDKLLMEAA-NPSPFY 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574345|ref|XP_003555309.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 141/178 (79%), Gaps = 8/178 (4%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I KIPKK++LQVTFSKRR+G+FKKASEL TLCGV+IA++VFSPA+KAFSFGHP V+S++D
Sbjct: 16  IEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLID 75

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            Y  RNP  P ESS   L+EAHRNAN+ +LNMQLTQV + LE+EKK  + L  +RKA  R
Sbjct: 76  RYTTRNP--PQESSAHHLVEAHRNANVCDLNMQLTQVFNHLEIEKKRADDLDHVRKARQR 133

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID-SKNNPS-----PFFGLG 172
           Q WWE+PI+ELGL+EL QLK ++EELKKN+E+ A+K +I+ S N PS     P  GLG
Sbjct: 134 QFWWESPIDELGLNELLQLKASIEELKKNIEKHASKFMIEHSSNIPSSSILGPNNGLG 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465111|ref|XP_004150272.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449484412|ref|XP_004156875.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 142/173 (82%), Gaps = 2/173 (1%)

Query: 3   KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
           K+P ++NLQVTFSKRR+G+FKKASEL TLCG +IA+IVFSP  K FSFGHP V+++++ +
Sbjct: 14  KMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERF 73

Query: 63  LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQC 122
           + RNP PPS S T +LIEAHRNAN+RELN QLTQVL+QLE+E+K GE L+++RKAS  QC
Sbjct: 74  VTRNP-PPS-SGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQC 131

Query: 123 WWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFGLGFWT 175
           WWE PI E+ +H+LEQLK +++ELKKNV QQA++ILI + +N +P   L F T
Sbjct: 132 WWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPT 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534256|ref|XP_003535673.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 141/178 (79%), Gaps = 8/178 (4%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I KIPKK++LQVTFSKRR+G+FKKASEL TLCGV+IA++VFSPA+KAFSFGHP V+S++D
Sbjct: 16  IEKIPKKSHLQVTFSKRRSGLFKKASELRTLCGVEIAVVVFSPADKAFSFGHPEVESLID 75

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            Y  RNP  P ESS   L+EAHRNAN+R+LNMQL+QV + LE+EKK G+ L   RKA  R
Sbjct: 76  RYTTRNP--PQESSAHHLVEAHRNANVRDLNMQLSQVFNHLEIEKKRGDDLDHARKARQR 133

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID-SKNNPS-----PFFGLG 172
           Q WWE+PI+ELGL+EL QLK ++EELK N+E+ A+K +I+ S N PS     P  GLG
Sbjct: 134 QFWWESPIDELGLNELLQLKASIEELKLNIEKHASKFMIEHSSNIPSSSLLGPNNGLG 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462355|ref|XP_003601459.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula] gi|355490507|gb|AES71710.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 143/179 (79%), Gaps = 8/179 (4%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           I KIPKK++LQVTFSKRR+G+FKKASEL TLCGV+IA++VFSPANKAFSFGHP V+SI+D
Sbjct: 15  IEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIID 74

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            YL+RNP  P ESS+ +L+EAHRNAN+R+LN+QLTQ+L  LE+EKK GE +  +RKA   
Sbjct: 75  RYLSRNP--PQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQM 132

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSP------FFGLGF 173
           Q WWE+P++ELGL+EL QLK ++E+L+KN+ + A+K +++  N  S       F G+G 
Sbjct: 133 QFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGI 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103797|ref|XP_002313197.1| predicted protein [Populus trichocarpa] gi|222849605|gb|EEE87152.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 134/169 (79%), Gaps = 8/169 (4%)

Query: 3   KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
           K+ K++NLQVTFSKRR+G+FKKASELSTLCG +IA+IVFSP N+ FSFGHP V++++D Y
Sbjct: 15  KMSKESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGNRVFSFGHPGVETVIDRY 74

Query: 63  LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQC 122
             R  NPP  S T +LIEAHRNA +RELNMQLTQV++Q E+EKK GE LS++RKA   QC
Sbjct: 75  FTR--NPPQNSGTMQLIEAHRNATVRELNMQLTQVVNQFEIEKKRGEELSQMRKAQS-QC 131

Query: 123 WWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSP--FF 169
           WWEAP+ EL L ++EQLK ++E LK NV +QA K+LI+   NP P  FF
Sbjct: 132 WWEAPVEELTLPQIEQLKVSLEGLKMNVTKQAQKLLIE---NPGPPQFF 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429167|ref|XP_002271109.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|297736393|emb|CBI25116.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 133/168 (79%), Gaps = 2/168 (1%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           ++K+ K++NLQVTFSKRR+G+FKKASEL TLCGV+IA++VFSP  K +SFGHP V+SI+D
Sbjct: 15  MAKMTKESNLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGKKVYSFGHPCVESIID 74

Query: 61  LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCR 120
            +L RNP P   SS  +L EAHR+AN+R+LN+QLTQVL+QLE+EKK GE L+++RKAS  
Sbjct: 75  RFLTRNPLP--NSSALQLFEAHRSANVRDLNLQLTQVLNQLEIEKKRGEALTQMRKASQA 132

Query: 121 QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPF 168
           QCWW A I EL    LE LK ++E LKKNV  Q +K++I++ N P+ F
Sbjct: 133 QCWWAASIEELSFERLELLKVSLENLKKNVALQVDKLMIEASNPPTFF 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562154|ref|XP_002522085.1| mads box protein, putative [Ricinus communis] gi|223538684|gb|EEF40285.1| mads box protein, putative [Ricinus communis]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/157 (63%), Positives = 130/157 (82%), Gaps = 2/157 (1%)

Query: 3   KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
           K+P ++NLQVTFSKRR+G+FKKASELSTLCG +IA+IVFSP  K FSFGHP V+ ++D +
Sbjct: 15  KMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFGHPGVEVVIDRF 74

Query: 63  LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQC 122
           L+RNP  P  S T +LIEAHRNA++RELN QLTQVL QLE+E+K GE L+++RK    +C
Sbjct: 75  LSRNP--PQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRGEELNQMRKTGQNRC 132

Query: 123 WWEAPINELGLHELEQLKTAMEELKKNVEQQANKILI 159
           WWEAPI++L + +LEQL+ ++E+LKKNV  QA+K+LI
Sbjct: 133 WWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLI 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.937	0.555	0.497	3.7e-39
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.813	0.545	0.516	7.2e-36
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.926	0.661	0.410	5.2e-26
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.920	0.721	0.395	3.6e-25
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.853	0.611	0.403	4.6e-25
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.903	0.898	0.343	2.4e-21
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.909	0.884	0.345	4.4e-20
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.847	0.872	0.350	5.7e-20
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.367	0.299	0.507	1e-18
TAIR|locus:2032543	185	AGL58 "AGAMOUS-like 58" [Arabi	0.920	0.881	0.319	3.6e-18

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 84/169 (49%), Positives = 114/169 (67%)

Query:     3 KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
             K+  ++NLQVTFSKRR+G+FKKASEL TLCG ++A++VFSP  K FSFGHPNVDS++D +
Sbjct:    15 KMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRF 74

Query:    63 LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIR-KASCRQ 121
             +  NP PP + +  +L E  RN+ +++LN  LTQVL QLE EKK  + L +IR K     
Sbjct:    75 INNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALG 134

Query:   122 CWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFG 170
              WWE P+ EL L +LE  K  +E LKK V  +A++      N P+ + G
Sbjct:   135 NWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF--QANVPNFYVG 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/151 (51%), Positives = 110/151 (72%)

Query:     3 KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
             KI K+++ QVTFSKRRAG+FKKASEL TLCG +I +IVFSPA K FSFGHP+V+S+LD Y
Sbjct:    71 KIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRY 130

Query:    63 LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQC 122
             ++RN    ++S     ++    A+  ELNMQLT +L ++E EKK G+ + E+RK S R+ 
Sbjct:   131 VSRNNMSLAQSQQ---LQGSPAASC-ELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRS 186

Query:   123 ---WWEAPINELGLHELEQLKTAMEELKKNV 150
                WWE P+ E+ + +L+++K A+EEL+K V
Sbjct:   187 MINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 73/178 (41%), Positives = 111/178 (62%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             + K+  ++NLQVTFSKRR G+FKKASEL TL G +I LIVFSP  K FSFGHP+V  ++ 
Sbjct:    13 MKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQELIH 72

Query:    61 LYLARNPNPPS-----ESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIR 115
              +   NPN  S     +++  +L+E   + NI+ LN  LT+VL   E EK+   VL ++ 
Sbjct:    73 RF--SNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQKRMVL-DLL 129

Query:   116 KASCRQC--WWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSP-FFG 170
             K S  Q   W+E  + +L ++E  QL +A++++KK + ++ ++    S+ N S  +FG
Sbjct:   130 KESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQY---SQVNVSQNYFG 184

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 68/172 (39%), Positives = 111/172 (64%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             I K+ K++NLQVTFSKR+AG+FKKASE  TLC   IA+IVFSPA K FSFGHPNVD +LD
Sbjct:    13 IVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLD 72

Query:    61 LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEI-RKASC 119
              +          ++T+ L E++   +++ LN   T+V  ++E E+K+ +  ++  R+   
Sbjct:    73 HFRGC---VVGHNNTN-LDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNERENEN 128

Query:   120 RQCWW-EAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPFFG 170
              + WW ++P+ EL L +   +   +++LKK V+++A +++   + NP+ + G
Sbjct:   129 AEEWWSKSPL-ELNLSQSTCMIRVLKDLKKIVDEKAIQLI--HQTNPNFYVG 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 63/156 (40%), Positives = 97/156 (62%)

Query:     3 KIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY 62
             K+  ++NLQVTFSKRR+G+FKK SEL TLC  +IA+IVFSP+ KA+SFGHPNV+ +LD  
Sbjct:    15 KMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHS 74

Query:    63 LARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGE-VLSEIRKASCRQ 121
             L R       ++T+   E+     I+ LN  LT+V+ + E E++  + ++   R+    +
Sbjct:    75 LGRVIR---HNNTN-FAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAE 130

Query:   122 CWWEAPINELGLHELEQLKTAMEELKKNVEQQANKI 157
              WW     EL L +   +K  +E LKK V+++  ++
Sbjct:   131 KWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 56/163 (34%), Positives = 88/163 (53%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             + K+   N  QVTFSKRR G+FKKASEL+TLC  ++ ++VFSP NK +SFG PN D I +
Sbjct:     8 MEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNFDVIAE 67

Query:    61 LYLARNPNPPSESS--TDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKAS 118
              +           S  T      +R    +++  +L  +  + E EKKHGE L +  + S
Sbjct:    68 RFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDLHKWLE-S 126

Query:   119 CRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 161
               Q  +  PI EL L EL++ +  ++++   ++   + +   S
Sbjct:   127 AEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASS 169

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 59/171 (34%), Positives = 98/171 (57%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             I KI K     VTFSKR  G++ K SELS LCGV++A I +S + K ++FG P+  ++ +
Sbjct:    14 IKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVAE 73

Query:    61 LYLARNPNPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEK---KHGEVLSEIRKA 117
              +L  N +  S SS+  ++ AH+ A I+EL  +  +++ +L+V++   K    L+E R  
Sbjct:    74 RFL--NGDASSSSSSSLVMNAHKQAKIQELCKKYNRLVEELKVDEVKVKKAAALAETRVV 131

Query:   118 SCRQCWWEAPINELGLHE-LEQLKTAMEEL-KKNVEQQANKILI--DSKNN 164
             + +  WW+   N++  HE  +++    +EL  K  EQ A++I    D  NN
Sbjct:   132 N-KDVWWKVDPNDVKDHEKAKKMMEKYQELYDKLCEQAASRIKRGHDENNN 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 54/154 (35%), Positives = 90/154 (58%)

Query:     8 NNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNP 67
             N  QVTFSKRR G+FKKASEL+TLC  ++ ++VFSP  K FS+G PN+DS+ + ++    
Sbjct:    15 NTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFMREYD 74

Query:    68 NPPSESSTDRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAP 127
             +  S+S  +     +R   ++ L+ +L  +  ++E EK+ GE   E  +++  + + E+ 
Sbjct:    75 D--SDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEKLESAGDERFKES- 130

Query:   128 INELGLHELEQLKTAMEELKKNVEQQANKILIDS 161
             I  L L EL + K  ++ +   +E Q N +   S
Sbjct:   131 IETLTLDELNEYKDRLQTVHGRIEGQVNHLQASS 164

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             I KI ++   QVTFSKRR G+FKK++ELS L G  IA+I FS  ++ + FGH  VD+++D
Sbjct:    54 IKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH--VDALID 111

Query:    61 LYLARNP 67
              YL ++P
Sbjct:   112 KYLRKSP 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2032543 AGL58 "AGAMOUS-like 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 55/172 (31%), Positives = 97/172 (56%)

Query:     1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
             I KI K  +  VT SKR   ++    ELS LCGV++A I +S + K ++FG P+  ++++
Sbjct:    14 IKKIEKDEDRSVTLSKRLNAIYTMIIELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVVE 73

Query:    61 LYLARNPNPPSESSTDRLIE-AHRNANIRELNMQLTQVLHQLEVEK---KHGEVLSEIRK 116
              +L    +  S SS  R ++ AH+ A I+EL  +  +++ +L+V++   K    L+E R 
Sbjct:    74 RFLNGEASSSSSSSLQRSVKNAHKQAKIQELCKRYNRLVEELKVDEVKVKKAAALAETRA 133

Query:   117 ASCRQCWWEAPINELGLHE-LEQLKTAMEELKKNV-EQQANKILI--DSKNN 164
              + +  WW+A  N++  HE  +++    +ELK+ + E+ A +I    D  NN
Sbjct:   134 VN-KDAWWKADPNDVKDHEKAKKMMEKYQELKEKLREEVALRIKRGHDENNN 184

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090814 hypothetical protein (217 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-29
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-25
smart00432	59	smart00432, MADS, MADS domain	4e-25
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	5e-23
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-15
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	2e-05

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  103 bits (258), Expect = 2e-29
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I +I    N QVTFSKRR G+ KKA ELS LC  ++ALI+FS + K + F  P+++ I++
Sbjct: 7  IKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIE 66

Query: 61 LYL 63
           Y 
Sbjct: 67 RYQ 69

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 91.8 bits (229), Expect = 3e-25
 Identities = 30/53 (56%), Positives = 38/53 (71%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHP 53
          I +I  K + QVTFSKRR G+FKKASELS LC  ++A+IVFSP+ K + F   
Sbjct: 7  IKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 91.5 bits (228), Expect = 4e-25
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHP 53
          I +I  K N QVTFSKRR G+FKKA ELS LC  ++ALIVFSP  K + F  P
Sbjct: 7  IKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 86.9 bits (216), Expect = 5e-23
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPN 54
          I +I  K    VTFSKRR G+FKKASELSTLCG ++A+IV+SP+ K + F   +
Sbjct: 7  IKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 67.0 bits (164), Expect = 1e-15
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 2  SKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 50
           +I  K+N QVTFSKRR G+FKKA ELS LC  ++A+I+FS   K + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 1   ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
           IS I  K    VTFSKR+ G+ KKA ELS L G ++ L+V S      +F  P ++S++ 
Sbjct: 88  ISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147

Query: 61  LYLAR--NPNPPSESSTD 76
               +    +P S + +D
Sbjct: 148 SLEGKSLIQSPCSNAPSD 165

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.95
smart00432	59	MADS MADS domain.	99.95
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.75
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.3
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.26
PF15079	205	DUF4546: Domain of unknown function (DUF4546)	90.09
PF04521	120	Viral_P18: ssRNA positive strand viral 18kD cystei	81.02
KOG4252	246	consensus GTP-binding protein [Signal transduction	80.08

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=6.2e-32  Score=206.73  Aligned_cols=68  Identities=51%  Similarity=0.863  Sum_probs=65.0

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCC--hhHHHHHHhhcCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPN--VDSILDLYLARNPN   68 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~ps--v~~Vl~ry~~~~~~   68 (177)
                      |++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|.||+|+  |+.|++||......
T Consensus         8 i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~   77 (195)
T KOG0014|consen    8 IKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEP   77 (195)
T ss_pred             eeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhh
Confidence            789999999999999999999999999999999999999999999999999987  99999999987654

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=4e-32  Score=177.82  Aligned_cols=66  Identities=45%  Similarity=0.805  Sum_probs=64.3

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARN   66 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~   66 (177)
                      |++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|++|++++||+||++.+
T Consensus         7 i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~   72 (77)
T cd00265           7 IKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS   72 (77)
T ss_pred             eEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence            689999999999999999999999999999999999999999999999999999999999999865

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.9e-29  Score=167.52  Aligned_cols=68  Identities=46%  Similarity=0.755  Sum_probs=64.3

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCC-hhHHHHHHhhcCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPN-VDSILDLYLARNPN   68 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~ps-v~~Vl~ry~~~~~~   68 (177)
                      |++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +..++++|...++.
T Consensus         7 i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           7 IKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             eEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            689999999999999999999999999999999999999999999999998877 99999999987643

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.95  E-value=1e-29  Score=152.39  Aligned_cols=51  Identities=63%  Similarity=0.996  Sum_probs=46.7

Q ss_pred             cccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCC
Q 045481            2 SKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGH   52 (177)
Q Consensus         2 k~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~   52 (177)
                      |+|+|+..|++||+|||.||||||+|||+||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>smart00432 MADS MADS domain

Probab=99.95  E-value=8.9e-29  Score=153.11  Aligned_cols=53  Identities=60%  Similarity=0.978  Sum_probs=51.8

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHP   53 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~p   53 (177)
                      |++|+|+.+|++||+||++||||||+||||||||+||+|||||+|++|.|++|
T Consensus         7 i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        7 IKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             eEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            68999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.94  E-value=3.1e-28  Score=150.80  Aligned_cols=53  Identities=57%  Similarity=0.891  Sum_probs=51.4

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHP   53 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~p   53 (177)
                      |++|+|+.+|++||+||++||||||+||||||||+||+|||||+|+++.|++|
T Consensus         7 i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           7 IKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             eEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            68999999999999999999999999999999999999999999999999876

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.75  E-value=3.2e-19  Score=140.22  Aligned_cols=69  Identities=36%  Similarity=0.592  Sum_probs=63.1

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCCh---------hHHHHHHhhcCCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNV---------DSILDLYLARNPNP   69 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv---------~~Vl~ry~~~~~~~   69 (177)
                      |++|+|+..|.+||+|||.||||||+|||||+|.+|-++|.|++|.+|+|..|..         +.+|...++.+..+
T Consensus        69 ~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~pd~~  146 (338)
T KOG0015|consen   69 MEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNAPDTP  146 (338)
T ss_pred             chhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcCCCCC
Confidence            6899999999999999999999999999999999999999999999999998854         47788888877654

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.30  E-value=1.2e-12  Score=107.59  Aligned_cols=59  Identities=42%  Similarity=0.630  Sum_probs=54.9

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHH
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSIL   59 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl   59 (177)
                      |.+|+|+.+|.|||.||+.||+|||.||++|.|.+|.++|.|.+|.+++|+.|....|+
T Consensus        88 is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~  146 (412)
T COG5068          88 ISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV  146 (412)
T ss_pred             cccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccc
Confidence            67899999999999999999999999999999999999999999999999988655443

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.26  E-value=6.7e-06  Score=56.35  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=39.2

Q ss_pred             ccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 045481          122 CWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNN  164 (177)
Q Consensus       122 ~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~~~~~~  164 (177)
                      +..|+++++|+++||..|+..|+..+..|+.|+.+++.+++..
T Consensus        37 ~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~   79 (100)
T PF01486_consen   37 HLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEE   79 (100)
T ss_pred             ccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999887653

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15079 DUF4546: Domain of unknown function (DUF4546)

Probab=90.09  E-value=2.7  Score=31.32  Aligned_cols=69  Identities=23%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 045481           86 NIRELNMQLTQVLHQLEVEKKHGEVLSEIRKASCRQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNP  165 (177)
Q Consensus        86 ~~~~l~~q~~~l~~~le~ekk~~e~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~l~~V~~r~~~L~~~~~~~~  165 (177)
                      .-++|.+++++...+|.   .+.+.+.++.           ++-|-+.+-|.+|.....+..+...++++-|+.-+-++-
T Consensus        48 ~T~eLkNeLREVREELk---EKmeEIKQIK-----------diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQKnnK  113 (205)
T PF15079_consen   48 GTQELKNELREVREELK---EKMEEIKQIK-----------DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQKNNK  113 (205)
T ss_pred             ccHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhcccccc
Confidence            44566677766665543   3444555543           233346678889999999999999999999999998888


Q ss_pred             CCc
Q 045481          166 SPF  168 (177)
Q Consensus       166 ~~~  168 (177)
                      +|+
T Consensus       114 lPl  116 (205)
T PF15079_consen  114 LPL  116 (205)
T ss_pred             Ccc
Confidence            776

>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses

Probab=81.02  E-value=6.3  Score=27.67  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             chhhhhhchhhHHHHHHHHhhhcCC
Q 045481           10 LQVTFSKRRAGVFKKASELSTLCGV   34 (177)
Q Consensus        10 R~~Tf~KRr~GL~KKa~ELs~LC~v   34 (177)
                      .-.+|+|+|..+++|-.+-.+-|..
T Consensus         3 ~~~~~rk~R~~~y~~lgl~~vkC~L   27 (120)
T PF04521_consen    3 SFRCVRKYRASVYKKLGLSAVKCRL   27 (120)
T ss_pred             chHHHHHHHHHHHHHcCCeeeeecC
Confidence            3468999999999999887665543

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=80.08  E-value=4.6  Score=30.83  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=22.4

Q ss_pred             cCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcC
Q 045481           32 CGVDIALIVFSPANKAFSFGHPNVDSILDLYLARN   66 (177)
Q Consensus        32 C~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~   66 (177)
                      -||.+||+|||.+++      -|.+.+++=|....
T Consensus        91 rgaqa~vLVFSTTDr------~SFea~~~w~~kv~  119 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDR------YSFEATLEWYNKVQ  119 (246)
T ss_pred             ccccceEEEEecccH------HHHHHHHHHHHHHH
Confidence            499999999999885      46677777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-13
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		8e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-12
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		5e-12
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		8e-12
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-11
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		7e-07
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-05
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-05

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          IS+I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ AN+ F +   ++D +L 
Sbjct: 8  ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLL 67
Query: 61 LYLARNPNPPSESSTD 76
           Y   +    S ++TD
Sbjct: 68 KYTEYSEPHESRTNTD 83

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66
Query: 61 LYLARNPNPPSESSTDRLIEA 81
           Y   N    S +++D ++EA
Sbjct: 67 KYTEYNEPHESRTNSD-IVEA 86

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          IS+I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ AN+ F +   ++D +L 
Sbjct: 7  ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLL 66
Query: 61 LYLARNPNPPSESSTDRL 78
           Y   +    S ++TD L
Sbjct: 67 KYTEYSEPHESRTNTDIL 84

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66
Query: 61 LYLARNPNPPSES 73
           Y     N P ES
Sbjct: 67 KYT--EYNEPHES 77

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66
Query: 61 LYLA 64
           Y A
Sbjct: 67 KYTA 70

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS L   +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLL 66
Query: 61 LYLARNPNPPSESSTD 76
           Y     N P ES T+
Sbjct: 67 KYT--EYNEPHESRTN 80

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I  I  K    VTFSKR+ G+ KKA ELS L G  + L+V S     ++F  P  + I+ 
Sbjct: 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 82
Query: 61 LYLARN 66
              RN
Sbjct: 83 QQEGRN 88

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 12 VTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 50
           TFSKR+ G+ KKA ELSTL G  + L+V S     ++F
Sbjct: 27 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 12 VTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 50
           TFSKR+ G+ KKA ELSTL G  + L+V S     ++F
Sbjct: 28 TTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-28
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-28
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	5e-27
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	3e-23
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  100 bits (251), Expect = 2e-28
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          +  I  K     TFSKR+ G+ KKA ELSTL G  + L+V S     ++F    +  ++ 
Sbjct: 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 76

Query: 61 LYLARN 66
              + 
Sbjct: 77 SETGKA 82

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  101 bits (252), Expect = 2e-28
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          +  I  K     TFSKR+ G+ KKA ELSTL G  + L+V S     ++F    +  ++ 
Sbjct: 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 75

Query: 61 LYLARNP------NPPSESSTD 76
              +        +P S   +D
Sbjct: 76 SETGKALIQTCLNSPDSPPRSD 97

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 97.2 bits (242), Expect = 5e-27
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I  I  K    VTFSKR+ G+ KKA ELS L G  + L+V S     ++F  P  + I+ 
Sbjct: 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 82

Query: 61 LYLARN 66
              RN
Sbjct: 83 QQEGRN 88

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 87.1 bits (216), Expect = 3e-23
 Identities = 32/83 (38%), Positives = 52/83 (62%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 LYLARNPNPPSESSTDRLIEAHR 83
           Y   N    S +++D +   ++
Sbjct: 67 KYTEYNEPHESRTNSDIVEALNK 89

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 85.1 bits (211), Expect = 1e-22
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 LYLARNPNPPSES 73
           Y     N P ES
Sbjct: 67 KY--TEYNEPHES 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 51/172 (29%)

Query: 36  IALIVFSPANKAFSFGHPNVDSILDL-Y------LARNPNPPS------ESSTDRL---- 78
              ++         F    V+ +L + Y      +      PS          DRL    
Sbjct: 68  FWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 79  -IEAHRNANIRELNMQLTQVLHQLEVEKK---HG-----------EVLS--EIRKASCRQ 121
            + A  N +  +  ++L Q L +L   K     G           +V    +++     +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 122 CWWEAPINELGLHE-----LEQLKTAMEELKKNVEQQANKILIDSKNNPSPF 168
            +W   +N L         LE L+  + ++  N   +++     S N     
Sbjct: 184 IFW---LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRI 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.98
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=4.6e-36  Score=194.19  Aligned_cols=68  Identities=44%  Similarity=0.715  Sum_probs=64.0

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN   68 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~   68 (177)
                      |++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+||...+++
T Consensus         7 ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             eEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            78999999999999999999999999999999999999999999999999999999999999987644

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.5e-35  Score=196.34  Aligned_cols=68  Identities=44%  Similarity=0.715  Sum_probs=66.1

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhcCCC
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLARNPN   68 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~   68 (177)
                      |++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+||+..+++
T Consensus         7 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~   74 (90)
T 3p57_A            7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (90)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred             eEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence            78999999999999999999999999999999999999999999999999999999999999998765

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.98  E-value=1.6e-33  Score=189.61  Aligned_cols=65  Identities=38%  Similarity=0.586  Sum_probs=62.9

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhc
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLAR   65 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~   65 (177)
                      |++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|++..|+++|.+.
T Consensus        23 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             eEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            78999999999999999999999999999999999999999999999999999999999999753

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=2.6e-33  Score=186.27  Aligned_cols=64  Identities=33%  Similarity=0.491  Sum_probs=61.8

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhh
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLA   64 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~   64 (177)
                      |++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||++|.+
T Consensus        17 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             EEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            6899999999999999999999999999999999999999999999999999999999998764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=1.2e-32  Score=186.47  Aligned_cols=62  Identities=34%  Similarity=0.512  Sum_probs=60.4

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHH
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLY   62 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry   62 (177)
                      |++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+|+.||+++
T Consensus        16 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B           16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             EEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	8e-28
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-27
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-26

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.5 bits (243), Expect = 8e-28
 Identities = 26/66 (39%), Positives = 34/66 (51%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I  I  K    VTFSKR+ G+ KKA ELS L G  + L+V S     ++F  P  + I+ 
Sbjct: 9  IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 68

Query: 61 LYLARN 66
              RN
Sbjct: 69 QQEGRN 74

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (241), Expect = 1e-27
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          I++I  + N QVTF+KR+ G+ KKA ELS LC  +IALI+F+ +NK F +   ++D +L 
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 LY 62
           Y
Sbjct: 67 KY 68

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (234), Expect = 2e-26
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 1  ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILD 60
          +  I  K     TFSKR+ G+ KKA ELSTL G  + L+V S     ++F    +  ++ 
Sbjct: 9  MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 68

Query: 61 LYLARN 66
              + 
Sbjct: 69 SETGKA 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=192.11  Aligned_cols=64  Identities=45%  Similarity=0.757  Sum_probs=62.7

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhh
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLA   64 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~   64 (177)
                      |++|+|+..|+|||+|||+||||||+|||+||||+||+|||||+|++|+|++|++++|++||..
T Consensus         7 ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             EEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-35  Score=189.81  Aligned_cols=65  Identities=38%  Similarity=0.586  Sum_probs=63.4

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhhc
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLAR   65 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~~   65 (177)
                      |++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.|++||.+.
T Consensus         9 i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           9 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             EEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            78999999999999999999999999999999999999999999999999999999999999864

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=187.59  Aligned_cols=64  Identities=33%  Similarity=0.491  Sum_probs=62.6

Q ss_pred             CcccCCCCcchhhhhhchhhHHHHHHHHhhhcCCcEEEEEecCCCCCcccCCCChhHHHHHHhh
Q 045481            1 ISKIPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSFGHPNVDSILDLYLA   64 (177)
Q Consensus         1 ik~I~n~~~R~~Tf~KRr~GL~KKa~ELs~LC~vev~~Ivfsp~gk~~~f~~psv~~Vl~ry~~   64 (177)
                      |++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|++++|+++|..
T Consensus         9 i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           9 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             EEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999975