Citrus Sinensis ID: 045528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MSSLTKPITSSPPSSSPSPLRKKKNMEDERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHccHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHcccHcHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHcccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccEEEEEEcccccEEEcccccEEccccHHHHcccccccEEcc
Coil and Loop (DISEMBL)
mssltkpitssppssspsplrkkknmederrmstrtRKVAPRMAAALASADNRTQAALARLEALEndnagietveindddgeasldddddegymqkrhskgtkrKTRQAKALEDARKAPRSFLELLHEanleslpphvpsylraavgppsktsrrhfctvcgfsanytcvkcgmrfccircqnihddtrclkfva
Flexible Loop (DISEMBL)
mssltkpitssppssspsplrkkknmederrmstrtrkvaPRMAAALASADNRTQAALARLEALendnagietveindddgeasldddddegymqkrhskgtkrktrqakALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQnihddtrcLKFVA
Low Complexity Region (SEG)
MssltkpitssppssspsplrkkkNMEDERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINdddgeasldddddEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************RRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF**
Disordered Region (DISOPRED)
***********************************************************************************************************************RSFLELLHEA*****PPHVPSYLRAAVGP*SKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Disordered Region (DISEMBL)
****************************************************RTQAALARLEALENDNAGIETVEINDDDGEASLDDDDDEGY***********************KAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Disordered Region (DISPRO)
***********************************************************RLEALEND******************************************KALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLTKPITSSPPSSSPSPLRKKKNMEDERRMSTRTRKVAPRMAAAxxxxxxxxxxxxxxxxxxxxxNAGIETVEINDDDGEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8R331	154	Zinc finger HIT domain-co	yes	no	0.635	0.805	0.382	2e-14
O43257	154	Zinc finger HIT domain-co	yes	no	0.779	0.987	0.347	3e-14
Q24JY4	154	Zinc finger HIT domain-co	yes	no	0.779	0.987	0.347	3e-14
Q54NW0	177	Zinc finger HIT domain-co	yes	no	0.353	0.389	0.428	1e-13
Q4U9I8	918	Protein SEY1 homolog OS=T	yes	no	0.502	0.106	0.284	8e-07
O59669	139	SWR1 complex subunit vps7	yes	no	0.256	0.359	0.44	1e-06

>sp|Q8R331|ZNHI1_MOUSE Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 60  RLEALENDNAGIETVEINDDDGEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAP 119
           +LEALENDN          DD  A L         Q      T +K ++ +      +  
Sbjct: 31  QLEALENDNF--------QDDPHAGLPQLGKR-LPQFDDDADTGKKKKKTRGDHFKLRFR 81

Query: 120 RSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCI 179
           ++F  LL E NL +     P+YL A  GPPS+  +R FC VCGF + YTCV CG R+C +
Sbjct: 82  KNFQALLEEQNLSA--SEGPNYLTACAGPPSR-PQRPFCAVCGFPSPYTCVSCGARYCTV 138

Query: 180 RCQNIHDDTRCLKFVA 195
           RC   H +TRCLK+  
Sbjct: 139 RCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.
Mus musculus (taxid: 10090)

>sp|O43257|ZNHI1_HUMAN Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 29  ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDD 88
           E++ S R++    R     A+   R      +LEALENDN          DD  A L   
Sbjct: 3   EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNF--------QDDPHAGLPQL 51

Query: 89  DDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGP 148
                 Q      T +K ++ +      +  ++F  LL E NL       P+YL A  GP
Sbjct: 52  GKR-LPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVA--EGPNYLTACAGP 108

Query: 149 PSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           PS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+  
Sbjct: 109 PSR-PQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.

Homo sapiens (taxid: 9606)

>sp|Q24JY4|ZNHI1_BOVIN Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 29  ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDD 88
           E++ S R++    R     A+   R      +LEALENDN          DD  A L   
Sbjct: 3   EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNF--------QDDPHAGLPQL 51

Query: 89  DDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGP 148
                 Q      T +K ++ +      +  ++F  LL E NL       P+YL A  GP
Sbjct: 52  GKR-LPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVA--EGPNYLTACAGP 108

Query: 149 PSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           PS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+  
Sbjct: 109 PSR-PQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKWTV 154

Seems to play a role in p53-mediated apoptosis induction.

Bos taurus (taxid: 9913)

>sp|Q54NW0|ZNHI1_DICDI Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 121 SFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIR 180
           +F ++L ++ LE+ P HVP+Y+ +    PS    RHFC++CG+   YTC +C  R+C I+
Sbjct: 103 NFNDVLEKSYLETFPDHVPTYI-SVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIK 161

Query: 181 CQNIHDDTRC 190
           C N H++TRC
Sbjct: 162 CFNYHNETRC 171

Dictyostelium discoideum (taxid: 44689)

>sp|Q4U9I8|SEY1_THEAN Protein SEY1 homolog OS=Theileria annulata GN=TA08650 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 87  DDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAV 146
           D DDE Y+ K  +K +    +         + P     ++    +E+   ++P + RAA 
Sbjct: 808 DSDDE-YVGKTVTKSSHSIYKH--------REPMDINLIVDHDEVEAEKNNLPCW-RAAY 857

Query: 147 GPPSKTSRRHFCTVCGFSANYTCVKCGMR--------FCCIRCQNIHDDTRCLKFV 194
                  +RH C +CGF ANY C  C  R        +C +RC  +H++T C K V
Sbjct: 858 ASGPARPQRHLCVICGFFANYKCRNCATRRIEAINSYYCSLRCLEVHNETNCGKAV 913

Cooperates with the reticulon proteins and tubule-shaping DP1 family proteins to generate and maintain the structure of the tubular endoplasmic reticulum network. Has GTPase activity, which is required for its function in ER organization.

Theileria annulata (taxid: 5874)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|O59669|VPS71_SCHPO SWR1 complex subunit vps71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps71 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 146 VGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           V  PS    R FC VCG+   Y C  CG  +C   C+ IH +TRC+K  A
Sbjct: 90  VAKPSYKPPRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSETRCMKVYA 139

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
225441742	172	PREDICTED: uncharacterized protein LOC10	0.841	0.953	0.843	3e-72
356565970	173	PREDICTED: zinc finger HIT domain-contai	0.861	0.971	0.794	1e-70
297801232	171	zinc finger family protein [Arabidopsis	0.861	0.982	0.751	9e-69
356539672	173	PREDICTED: zinc finger HIT domain-contai	0.861	0.971	0.771	2e-68
18421605	171	zinc finger HIT domain-containing protei	0.861	0.982	0.739	3e-68
255550589	174	zinc finger protein, putative [Ricinus c	0.846	0.948	0.807	7e-68
224124700	172	predicted protein [Populus trichocarpa]	0.856	0.970	0.782	2e-66
449450842	171	PREDICTED: zinc finger HIT domain-contai	0.830	0.947	0.789	3e-66
242084474	173	hypothetical protein SORBIDRAFT_08g00076	0.871	0.982	0.672	8e-61
58892587	171	zinc finger protein [Nicotiana benthamia	0.830	0.947	0.734	8e-61

>gi|225441742|ref|XP_002283156.1| PREDICTED: uncharacterized protein LOC100245318 [Vitis vinifera] gi|297739700|emb|CBI29882.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 151/166 (90%), Gaps = 2/166 (1%)

Query: 30  RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDDD 89
           RRMSTRTRKVA RMAAALAS DNR QAALARLEALENDNAG+ET+++NDD  E +  DDD
Sbjct: 9   RRMSTRTRKVASRMAAALASTDNRNQAALARLEALENDNAGMETIDVNDD--EDASLDDD 66

Query: 90  DEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPP 149
           DEGY QKR SKGTKR TRQAKALE+ARKAPR+FLEL+HEANLESLPPHVPSYLRAAVGPP
Sbjct: 67  DEGYAQKRQSKGTKRTTRQAKALENARKAPRTFLELVHEANLESLPPHVPSYLRAAVGPP 126

Query: 150 SKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           S TSRRHFCTVCGF+ANYTCV+CG RFC  RCQNIH+DTRCLKFVA
Sbjct: 127 SSTSRRHFCTVCGFAANYTCVRCGTRFCSTRCQNIHNDTRCLKFVA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565970|ref|XP_003551208.1| PREDICTED: zinc finger HIT domain-containing protein 1 homolog [Glycine max]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/175 (79%), Positives = 156/175 (89%), Gaps = 7/175 (4%)

Query: 26  MEDE-----RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDD 80
           MED+     RRMS+RTRKVA +MAAALASADNRTQAALARL+ALENDNAG E  + N+DD
Sbjct: 1   MEDDGSNSIRRMSSRTRKVASKMAAALASADNRTQAALARLDALENDNAGFEIADANNDD 60

Query: 81  GEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPS 140
            +ASLD++D + YMQK+ SKGTKRKTRQAKALE AR+APR+FLELLHEANLESLPPHVPS
Sbjct: 61  DDASLDEED-QFYMQKKQSKGTKRKTRQAKALE-ARRAPRTFLELLHEANLESLPPHVPS 118

Query: 141 YLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           Y +AAVGPPS TSRRHFCTVCGFSANYTCV+CGMRFC  RCQN+H+DTRCLKFVA
Sbjct: 119 YWKAAVGPPSSTSRRHFCTVCGFSANYTCVRCGMRFCSHRCQNVHNDTRCLKFVA 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801232|ref|XP_002868500.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297314336|gb|EFH44759.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 26  MEDE---RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGE 82
           ME+E   RR+S RTRKVA +MAAAL S DNRTQAA+ARLEALENDN  IE V++NDDD E
Sbjct: 1   MEEEMSNRRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVVDMNDDD-E 59

Query: 83  ASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYL 142
           ASLD+DDD GY+QK+  KG+KRKTRQAKALE AR+AP+SFLELL EANLESLP HVP+YL
Sbjct: 60  ASLDEDDDLGYVQKKQHKGSKRKTRQAKALE-ARRAPKSFLELLQEANLESLPAHVPTYL 118

Query: 143 RAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           +AAVGPPS +SRRHFC+VCG+ A Y C  CGMRFC IRCQNIH DTRC KFVA
Sbjct: 119 KAAVGPPSSSSRRHFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539672|ref|XP_003538319.1| PREDICTED: zinc finger HIT domain-containing protein 1 homolog [Glycine max]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 154/175 (88%), Gaps = 7/175 (4%)

Query: 26  MEDE-----RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDD 80
           MED+     RRMS+RTRKVA +MAAALASADNRTQAALARL+ALENDNAG E  + N+DD
Sbjct: 1   MEDDGSNSTRRMSSRTRKVASKMAAALASADNRTQAALARLDALENDNAGFEIADANNDD 60

Query: 81  GEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPS 140
            +ASLD++D + Y+QK+ SKGTKRKTRQAKALE AR+APR+FLELLHEANLESLPPHVPS
Sbjct: 61  DDASLDEED-QFYIQKKQSKGTKRKTRQAKALE-ARRAPRTFLELLHEANLESLPPHVPS 118

Query: 141 YLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           Y +AAVGPPS +SR HFCTVC FSANYTCV+CGMRFC  RCQN+H+DTRCLKFVA
Sbjct: 119 YWKAAVGPPSSSSRCHFCTVCAFSANYTCVRCGMRFCSYRCQNVHNDTRCLKFVA 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18421605|ref|NP_568545.1| zinc finger HIT domain-containing protein 1 [Arabidopsis thaliana] gi|14190359|gb|AAK55660.1|AF378857_1 AT5g37050/mjg14_20 [Arabidopsis thaliana] gi|10177984|dbj|BAB11357.1| unnamed protein product [Arabidopsis thaliana] gi|15215867|gb|AAK91477.1| AT5g37050/mjg14_20 [Arabidopsis thaliana] gi|51968754|dbj|BAD43069.1| unknown protein [Arabidopsis thaliana] gi|332006759|gb|AED94142.1| zinc finger HIT domain-containing protein 1 [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 26  MEDE---RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGE 82
           ME+E   RR+S RTRKVA +MAAAL S DNRTQAA+ARLEALENDN  IE +++NDD+ E
Sbjct: 1   MEEEMSNRRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE-E 59

Query: 83  ASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYL 142
           ASLD+DDD GY+QK+  KG+KRKTRQAKALE ARKAP+SFLELL EANLESLP HVP+YL
Sbjct: 60  ASLDEDDDLGYLQKKQHKGSKRKTRQAKALE-ARKAPKSFLELLQEANLESLPSHVPTYL 118

Query: 143 RAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           +AAVGPPS +SRR+FC+VCG+ A Y C  CGMRFC IRCQNIH DTRC KFVA
Sbjct: 119 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550589|ref|XP_002516344.1| zinc finger protein, putative [Ricinus communis] gi|223544510|gb|EEF46028.1| zinc finger protein, putative [Ricinus communis]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 150/166 (90%), Gaps = 1/166 (0%)

Query: 30  RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDDD 89
           RRMS+RTRKVAP+MAAALAS+DNRTQAALARLEALEND  G+ETVE NDDD  +  DDDD
Sbjct: 10  RRMSSRTRKVAPKMAAALASSDNRTQAALARLEALENDFVGMETVETNDDDEASL-DDDD 68

Query: 90  DEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPP 149
           DEGY+QK+  K TKR+TRQAKALE+ARKAPR+FLELLHEANL+SLPPHVPSYL+AAVGPP
Sbjct: 69  DEGYLQKKQPKSTKRRTRQAKALENARKAPRNFLELLHEANLDSLPPHVPSYLKAAVGPP 128

Query: 150 SKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           S T RRHFC VCGF+++YTCV+CG RFC  RCQNIHDDTRCLKFVA
Sbjct: 129 SSTCRRHFCAVCGFASSYTCVRCGTRFCSTRCQNIHDDTRCLKFVA 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124700|ref|XP_002319400.1| predicted protein [Populus trichocarpa] gi|222857776|gb|EEE95323.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 151/175 (86%), Gaps = 8/175 (4%)

Query: 26  MEDE-----RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDD 80
           MED+     RRMS RTRK+AP+MAAALAS DNRTQAA+ARLEALEND  G+ETVE  DDD
Sbjct: 1   MEDDVSNPFRRMSMRTRKIAPKMAAALASNDNRTQAAIARLEALENDYTGMETVEAVDDD 60

Query: 81  GEASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPS 140
             +   DDDD+ Y+QK+  KGTKRKTRQAKALE+ARKAPR+FLELLHEANLE+LPPHVPS
Sbjct: 61  EASL--DDDDDVYIQKKQ-KGTKRKTRQAKALENARKAPRNFLELLHEANLEALPPHVPS 117

Query: 141 YLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           YLRAAVGPPS T RRHFCTVCGF++NYTC KCGMRFC IRCQ IHDDTRCLKFVA
Sbjct: 118 YLRAAVGPPSSTCRRHFCTVCGFTSNYTCAKCGMRFCSIRCQKIHDDTRCLKFVA 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450842|ref|XP_004143171.1| PREDICTED: zinc finger HIT domain-containing protein 1 homolog [Cucumis sativus] gi|449505173|ref|XP_004162397.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger HIT domain-containing protein 1 homolog [Cucumis sativus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 150/166 (90%), Gaps = 4/166 (2%)

Query: 30  RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDDD 89
           RRMS+RTRKVAP+M AALAS+DNRTQAALARLEALENDNAG+E VE  + D E +  DDD
Sbjct: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVE--NIDDEDASLDDD 67

Query: 90  DEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPP 149
           D+ Y+ KR SKGTKRKTRQAKALE A+KAP++F+ELLHEANLESLPPHVPSYL+AAVGPP
Sbjct: 68  DQAYI-KRQSKGTKRKTRQAKALE-AKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPP 125

Query: 150 SKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           S TSRRHFCTVCGF+A+YTC++CG+RFC  RCQNIH+DTRCLKFVA
Sbjct: 126 SSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084474|ref|XP_002442662.1| hypothetical protein SORBIDRAFT_08g000760 [Sorghum bicolor] gi|241943355|gb|EES16500.1| hypothetical protein SORBIDRAFT_08g000760 [Sorghum bicolor]

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 143/174 (82%), Gaps = 4/174 (2%)

Query: 22  KKKNMEDERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDG 81
           +++N+   RR S RTR++A RMA+ALAS+DNR QAALARLEALE+DNAG+E V++NDD  
Sbjct: 4   EEENVGPFRRTSARTRRMASRMASALASSDNRAQAALARLEALESDNAGVEVVDLNDD-- 61

Query: 82  EASLDDDDDEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSY 141
           E    D++D   MQK+ SK  KRKTRQ KALE  ++A RSF+++L EANLESLPPHVP+Y
Sbjct: 62  EYGSTDEEDPVLMQKKQSKIMKRKTRQGKALE--KRAARSFMDVLQEANLESLPPHVPTY 119

Query: 142 LRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           LRAAVGPPS +SRRH+C+VCG SANYTCV+CG RFC  RCQ IH+DTRCLKFVA
Sbjct: 120 LRAAVGPPSTSSRRHYCSVCGSSANYTCVRCGTRFCSCRCQVIHNDTRCLKFVA 173

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58892587|gb|AAW83129.1| zinc finger protein [Nicotiana benthamiana]

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 137/166 (82%), Gaps = 4/166 (2%)

Query: 30  RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINDDDGEASLDDDD 89
           RRMS RTRKVAP+MAAALAS+DNRTQA LARL+ALE+DNA    VE    D +     DD
Sbjct: 10  RRMSVRTRKVAPKMAAALASSDNRTQAMLARLDALESDNA---VVEQQPLDDDDEASLDD 66

Query: 90  DEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPP 149
           ++    K++ KGTKRKTRQAKALE+ R AP++FLELL EANLESLPPHVP+YLRAAVGPP
Sbjct: 67  EDQVFHKKYPKGTKRKTRQAKALENKR-APKTFLELLREANLESLPPHVPTYLRAAVGPP 125

Query: 150 SKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
           S  SRRHFCTVCGFSANYTCV+CGMRFC I+CQ IH DTRCLKFVA
Sbjct: 126 SSISRRHFCTVCGFSANYTCVQCGMRFCSIKCQTIHKDTRCLKFVA 171

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:505006661	171	SEF "SERRATED LEAVES AND EARLY	0.861	0.982	0.682	1.4e-57
ZFIN|ZDB-GENE-050417-272	154	znhit1 "zinc finger, HIT-type	0.769	0.974	0.351	3.6e-18
RGD|2322870	154	Znhit1 "zinc finger, HIT-type	0.764	0.967	0.337	6.7e-17
UNIPROTKB|Q24JY4	154	ZNHIT1 "Zinc finger HIT domain	0.764	0.967	0.337	1.1e-16
UNIPROTKB|O43257	154	ZNHIT1 "Zinc finger HIT domain	0.764	0.967	0.337	1.1e-16
MGI|MGI:1917353	154	Znhit1 "zinc finger, HIT domai	0.764	0.967	0.331	1.4e-16
DICTYBASE|DDB_G0284961	177	DDB_G0284961 "HIT-type zinc fi	0.820	0.903	0.294	2e-15
FB|FBgn0031668	151	CG31917 [Drosophila melanogast	0.456	0.589	0.4	1.3e-13
WB|WBGene00016992	194	zhit-1 [Caenorhabditis elegans	0.487	0.489	0.326	3.1e-12
POMBASE|SPBC29A3.05	139	vps71 "Swr1 complex subunit Vp	0.287	0.402	0.410	1.2e-08

TAIR|locus:505006661 SEF "SERRATED LEAVES AND EARLY FLOWERING" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 118/173 (68%), Positives = 135/173 (78%)

Query:    26 MEDE---RRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINXXXXX 82
             ME+E   RR+S RTRKVA +MAAAL S DNRTQAA+ARLEALENDN  IE +++N     
Sbjct:     1 MEEEMSNRRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDEEA 60

Query:    83 XXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYL 142
                      GY+QK+  KG+KRKTRQAKALE ARKAP+SFLELL EANLESLP HVP+YL
Sbjct:    61 SLDEDDDL-GYLQKKQHKGSKRKTRQAKALE-ARKAPKSFLELLQEANLESLPSHVPTYL 118

Query:   143 RAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
             +AAVGPPS +SRR+FC+VCG+ A Y C  CGMRFC IRCQNIH DTRC KFVA
Sbjct:   119 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0048638 "regulation of developmental growth" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IGI;RCA

GO:0006338 "chromatin remodeling" evidence=RCA

ZFIN|ZDB-GENE-050417-272 znhit1 "zinc finger, HIT-type containing 1" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 58/165 (35%), Positives = 81/165 (49%)

Query:    29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINXXXXXXXXXXX 88
             E++++ R++   P     L SA  R +    +LEALE DN   +                
Sbjct:     3 EKKIAVRSQD--PGQRRVLDSA-TRLRRLSRQLEALEKDNFQDDP------HASLPQLVK 53

Query:    89 XXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGP 148
                 + +   S   ++KTR     +  RK   +F  LL E +L       P+YL A    
Sbjct:    54 RLPQFDESNESGKRRKKTRGDHFKQRFRK---NFQTLLEEEDLSV--SEGPNYLTACA-E 107

Query:   149 PSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 193
             PSK  +RHFC VCGF +NYTCV CG R+CC+RC   H +TRCLK+
Sbjct:   108 PSKIPQRHFCAVCGFPSNYTCVSCGARYCCVRCLGTHHETRCLKW 152

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|2322870 Znhit1 "zinc finger, HIT-type containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 56/166 (33%), Positives = 79/166 (47%)

Query:    29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIET-VEINXXXXXXXXXX 87
             E++ S R++    R     A+   R      +LEALENDN   +    +           
Sbjct:     3 EKKPSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNFQDDPHAGLPQLGKRLPQFD 59

Query:    88 XXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVG 147
                +   +K+ ++G   K R  K          +F  LL E NL +     P+YL A  G
Sbjct:    60 DDADTGKKKKKTRGDHFKLRFRK----------NFQALLEEQNLSA--SEGPNYLTACAG 107

Query:   148 PPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 193
             PPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:   108 PPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0031063 "regulation of histone deacetylation" evidence=ISO

GO:0042129 "regulation of T cell proliferation" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0070317 "negative regulation of G0 to G1 transition" evidence=ISO

UNIPROTKB|Q24JY4 ZNHIT1 "Zinc finger HIT domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 56/166 (33%), Positives = 78/166 (46%)

Query:    29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIET-VEINXXXXXXXXXX 87
             E++ S R++    R     A+   R      +LEALENDN   +    +           
Sbjct:     3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNFQDDPHAGLPQLGKRLPQFD 59

Query:    88 XXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVG 147
                +   +K+ ++G   K R  K          +F  LL E NL       P+YL A  G
Sbjct:    60 DDADTGKKKKKTRGDHFKLRFRK----------NFQALLEEQNLSVAEG--PNYLTACAG 107

Query:   148 PPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 193
             PPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:   108 PPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O43257 ZNHIT1 "Zinc finger HIT domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 56/166 (33%), Positives = 78/166 (46%)

Query:    29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIET-VEINXXXXXXXXXX 87
             E++ S R++    R     A+   R      +LEALENDN   +    +           
Sbjct:     3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDNFQDDPHAGLPQLGKRLPQFD 59

Query:    88 XXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVG 147
                +   +K+ ++G   K R  K          +F  LL E NL       P+YL A  G
Sbjct:    60 DDADTGKKKKKTRGDHFKLRFRK----------NFQALLEEQNLSVAEG--PNYLTACAG 107

Query:   148 PPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 193
             PPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:   108 PPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917353 Znhit1 "zinc finger, HIT domain containing 1" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 55/166 (33%), Positives = 79/166 (47%)

Query:    29 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIET-VEINXXXXXXXXXX 87
             E++ + R++    R     A+   R      +LEALENDN   +    +           
Sbjct:     3 EKKPAVRSQDPGQRRVLDRAARQRRINR---QLEALENDNFQDDPHAGLPQLGKRLPQFD 59

Query:    88 XXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVG 147
                +   +K+ ++G   K R  K          +F  LL E NL +     P+YL A  G
Sbjct:    60 DDADTGKKKKKTRGDHFKLRFRK----------NFQALLEEQNLSA--SEGPNYLTACAG 107

Query:   148 PPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 193
             PPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:   108 PPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031063 "regulation of histone deacetylation" evidence=IDA

GO:0042129 "regulation of T cell proliferation" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IDA

DICTYBASE|DDB_G0284961 DDB_G0284961 "HIT-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 50/170 (29%), Positives = 83/170 (48%)

Query:    25 NMEDERRMSTRTRKVAPRMAAALASADNRT---QAALARLEALENDNAGIETVEINXXXX 81
             N+E  +  S R  +++ R     +  D R    +   ARLE+L++DN   E   I     
Sbjct:     8 NIETPQS-SKRKSQISKRYRVT-SEEDRRNLKEKVISARLESLDDDN---EQQPIGSRGD 62

Query:    82 XXXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPR-SFLELLHEANLESLPPHVPS 140
                      E  +        KR     +  ++ +K+   +F ++L ++ LE+ P HVP+
Sbjct:    63 EEDNDYNDDENEIVYTTPVNKKRLFIAREKKKNEKKSMNLNFNDVLEKSYLETFPDHVPT 122

Query:   141 YLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRC 190
             Y+ +    PS    RHFC++CG+   YTC +C  R+C I+C N H++TRC
Sbjct:   123 YI-SVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0031668 CG31917 [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query:   101 GTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTV 160
             G ++K ++  A     K  ++F +LL E   +      P+Y  AA   P K  R HFC V
Sbjct:    63 GKEKKGKRKGAEYFLVKYRKNFQQLLEEDKDKQ-----PNYESAAAPAPQKPLR-HFCAV 116

Query:   161 CGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
             CG  + Y+C  CG R+CC+RC   H DTRCLK+ A
Sbjct:   117 CGNFSLYSCTACGTRYCCVRCLQTHQDTRCLKWTA 151

GO:0048812 "neuron projection morphogenesis" evidence=IMP

WB|WBGene00016992 zhit-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/101 (32%), Positives = 55/101 (54%)

Query:   101 GTKRKTRQAKALE-DARKAPRSFLELLHEANLESLPPHVPSYLRA-----AVGPPSKTSR 154
             G K + R+    E + ++  +SF   + E +   L    P Y R      +  PPS+   
Sbjct:    94 GEKARRRKLARPEFNKQRFKKSFNAHVIEQSKAILDSAEPDYRRVNAYQLSSAPPSEKPA 153

Query:   155 RHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
             R FC VCG  + Y C +CG ++C + C+++H+DTRC+K++A
Sbjct:   154 RKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDTRCMKWLA 194

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

POMBASE|SPBC29A3.05 vps71 "Swr1 complex subunit Vps71" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query:   140 SYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKFVA 195
             S     V  PS    R FC VCG+   Y C  CG  +C   C+ IH +TRC+K  A
Sbjct:    84 SRYNTCVAKPSYKPPRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSETRCMKVYA 139

GO:0000812 "Swr1 complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IPI

GO:0043486 "histone exchange" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025544001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (172 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014088001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (295 aa)					•		•		0.641
	GSVIVG00025371001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1260 aa)					•		•		0.504

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam04438	30	pfam04438, zf-HIT, HIT zinc finger	2e-09

>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 154 RRHFCTVCGFSANYTCVKCGMRFCCIRCQN 183
            R  C+VCG  + Y C +CG+R+C + C  
Sbjct: 1   PRKLCSVCGNPSKYRCPRCGVRYCSLECYK 30

This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interacts with the ligand binding domain of the thyroid receptor. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG3362	156	consensus Predicted BBOX Zn-finger protein [Genera	100.0
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	99.19
KOG4137	102	consensus Uncharacterized conserved protein [Funct	97.67
COG5195	118	Uncharacterized conserved protein [Function unknow	97.23
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	95.93
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	93.96
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	93.74
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.76
PF08265	30	YL1_C: YL1 nuclear protein C-terminal domain; Inte	92.39
PLN00206	518	DEAD-box ATP-dependent RNA helicase; Provisional	90.35
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	87.52
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	87.14
PRK00420	112	hypothetical protein; Validated	85.98
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	85.42
COG1592	166	Rubrerythrin [Energy production and conversion]	82.1
PRK14704	618	anaerobic ribonucleoside triphosphate reductase; P	81.75
TIGR02487	579	NrdD anaerobic ribonucleoside-triphosphate reducta	81.54
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	80.73

>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1e-46  Score=305.70  Aligned_cols=152  Identities=32%  Similarity=0.541  Sum_probs=125.5

Q ss_pred             hhhhhhcccccchhhhhhhhhcCCHHHHHHHHHHHHHhhhCCCCCCCCccC-CCCc-ccCCCCCCCchhhhhhccCCCcc
Q 045528           26 MEDERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEI-NDDD-GEASLDDDDDEGYMQKRHSKGTK  103 (195)
Q Consensus        26 ~~~~~R~S~R~r~~s~r~r~~vlDe~tR~rr~~~rLeaLE~DN~~~dp~~~-~dd~-~~~~~d~~d~~g~~~Kk~~k~~k  103 (195)
                      |..+.|.|.|+++.++++   |||+++|+++++++||+||+||||||||++ .+.. .+.++|+.++          +++
T Consensus         3 ~~~e~r~s~r~~~~~~rR---vlD~~ar~rr~~r~l~~Le~Dn~~ddpha~l~~~k~~p~f~d~l~~----------Gkr   69 (156)
T KOG3362|consen    3 HSFEERASQRIKDQEQRR---VLDLNARQRRDNRNLEALEQDNFHDDPHASLVKPKQLPKFDDDLMG----------GKR   69 (156)
T ss_pred             cchHHHHHHHHhhhhhcc---ccchHHHHhhhhhhhHHHhhhccCCCcccccccccccccccHHHhc----------chh
Confidence            456779999999999995   889999999999999999999999999987 3332 2444443332          112


Q ss_pred             chhhhHHHHHhhhcccccHHHHHHHhhhccCCCCCCCeEEEEeCCCCCCCCcccccccCCCCceeccCCCCcccChhhhh
Q 045528          104 RKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQN  183 (195)
Q Consensus       104 rK~r~~~~l~~k~r~rknf~~lLeE~~l~~~~~~~p~Y~~a~a~ps~~~P~r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~  183 (195)
                      ++.++....+++++|+|||++||||++++-  ...|+|.++.|+|+.. |.|+||+||||||.|+|+.||++|||+.|+.
T Consensus        70 ~~~~~~~~~~~~~~~RKnf~~~Ldea~~~~--~k~~~Y~~~~a~p~~K-P~r~fCaVCG~~S~ysC~~CG~kyCsv~C~~  146 (156)
T KOG3362|consen   70 KKQKSYKSEKFKLRFRKNFQALLDEALLNL--MKNPNYHTAYAKPSFK-PLRKFCAVCGYDSKYSCVNCGTKYCSVRCLK  146 (156)
T ss_pred             hhccccccchhhhhHHHHHHHHHHccchhh--hhccchhhcccCCCCC-CcchhhhhcCCCchhHHHhcCCceeechhhh
Confidence            222233356778999999999999998752  4679999999999854 6779999999999999999999999999999


Q ss_pred             hhcccccCcc
Q 045528          184 IHDDTRCLKF  193 (195)
Q Consensus       184 ~H~EtRC~K~  193 (195)
                      +|+||||+||
T Consensus       147 ~HneTRC~kw  156 (156)
T KOG3362|consen  147 THNETRCMKW  156 (156)
T ss_pred             hccccccccC
Confidence            9999999999

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.19  E-value=4.7e-12  Score=78.39  Aligned_cols=29  Identities=45%  Similarity=1.307  Sum_probs=23.9

Q ss_pred             cccccccCCCCceeccCCCCcccChhhhh
Q 045528          155 RHFCTVCGFSANYTCVKCGMRFCCIRCQN  183 (195)
Q Consensus       155 r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~  183 (195)
                      +++|+|||++++|+|++||.+|||+.|++
T Consensus         2 ~~~C~vC~~~~kY~Cp~C~~~~CSl~C~k   30 (30)
T PF04438_consen    2 RKLCSVCGNPAKYRCPRCGARYCSLACYK   30 (30)
T ss_dssp             -EEETSSSSEESEE-TTT--EESSHHHHH
T ss_pred             cCCCccCcCCCEEECCCcCCceeCcEeEC
Confidence            57999999999999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>KOG4137 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=5.6e-05  Score=58.58  Aligned_cols=68  Identities=18%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             cccHHHHHHHhhhccCCCCCCCeEEEEeCCCCCCCCcccccccCCCCceeccCCCCcccChhhhhhhcc
Q 045528          119 PRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDD  187 (195)
Q Consensus       119 rknf~~lLeE~~l~~~~~~~p~Y~~a~a~ps~~~P~r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~~H~E  187 (195)
                      -||+-+++..+.++.+...-++|++..|+|| ..|+.+.|-|.|.++-|+||.=|.||-+..=|....|
T Consensus        15 ~kn~rq~~~~e~~q~l~~~k~tYfsi~appS-v~PakKycDvTGLpapYtdP~t~Lry~naeiY~~i~e   82 (102)
T KOG4137|consen   15 GKNMRQKILKELLQRLIEKKHTYFSIEAPPS-VKPAKKYCDVTGLPAPYTDPNTGLRYHNAEIYKLICE   82 (102)
T ss_pred             CccHHHHHhhhhhhhcccccCceEEecCCCc-cccchhhccccCCcccccCCCccceeccHHHHHHHHH
Confidence            4555566666666555556689999999997 7777899999999999999999999988766665444

>COG5195 Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.00031  Score=55.38  Aligned_cols=69  Identities=22%  Similarity=0.466  Sum_probs=51.6

Q ss_pred             cccccHHHHHHHhhhccCCCCCCCeEEEEeCCCCCCCCcccccccCCCCceeccCCCCcccChhhhhhhcc
Q 045528          117 KAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDD  187 (195)
Q Consensus       117 r~rknf~~lLeE~~l~~~~~~~p~Y~~a~a~ps~~~P~r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~~H~E  187 (195)
                      +.-|++-+||..+.++. -+.--+|+.+.|+|| ..|+.++|-|.|.++.||||.=|.||=...=|+...|
T Consensus        30 rr~ktlrQli~~~~i~n-e~sk~~Y~sieappS-v~P~~KyCDvTGL~a~Yt~P~t~lrYhn~eiY~lI~e   98 (118)
T COG5195          30 RRFKTLRQLIPRLTIEN-ESSKHRYLSIEAPPS-VKPRMKYCDVTGLPAPYTCPNTGLRYHNSEIYKLICE   98 (118)
T ss_pred             cchhhHHHHcccccccc-ccccceeEeecCCCc-cccccccccccCCcccccCCCcCceeccHHHHHHhhc
Confidence            34567778886654432 111348999999987 7888899999999999999999999976665555443

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.93  E-value=0.0054  Score=38.60  Aligned_cols=29  Identities=34%  Similarity=0.873  Sum_probs=25.1

Q ss_pred             ccccCCCCceeccCC-CCcccChhhhhhhc
Q 045528          158 CTVCGFSANYTCVKC-GMRFCCIRCQNIHD  186 (195)
Q Consensus       158 C~VCG~~~~YtC~~C-g~ryCS~~C~~~H~  186 (195)
                      |.+||..+.-.|.+| ...|||..|+..|.
T Consensus         1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w   30 (37)
T PF01753_consen    1 CAVCGKPALKRCSRCKSVYYCSEECQRADW   30 (37)
T ss_dssp             -TTTSSCSSEEETTTSSSEESSHHHHHHHH
T ss_pred             CcCCCCCcCCcCCCCCCEEecCHHHHHHHH
Confidence            789999887799999 67999999999886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=93.96  E-value=0.032  Score=39.22  Aligned_cols=28  Identities=29%  Similarity=0.774  Sum_probs=23.3

Q ss_pred             cccccCC----CCceeccCCCCc-ccChhhhhh
Q 045528          157 FCTVCGF----SANYTCVKCGMR-FCCIRCQNI  184 (195)
Q Consensus       157 fC~VCG~----~~~YtC~~Cg~r-yCS~~C~~~  184 (195)
                      +|.||+.    ...|.|+.||.+ |||..-+..
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~   33 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWED   33 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHHH
Confidence            6999999    889999999996 588776543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=93.74  E-value=0.016  Score=53.39  Aligned_cols=33  Identities=30%  Similarity=0.848  Sum_probs=28.9

Q ss_pred             cccccccCCCC-ceeccCCC-CcccChhhhhhhcc
Q 045528          155 RHFCTVCGFSA-NYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       155 r~fC~VCG~~~-~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      -.||++||-+| +-+|..|- .-||+..|++.|+-
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf  353 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF  353 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhH
Confidence            35999999988 55999997 78999999999974

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.76  E-value=0.054  Score=33.65  Aligned_cols=20  Identities=40%  Similarity=1.072  Sum_probs=16.2

Q ss_pred             ccccccCCC-----CceeccCCCCc
Q 045528          156 HFCTVCGFS-----ANYTCVKCGMR  175 (195)
Q Consensus       156 ~fC~VCG~~-----~~YtC~~Cg~r  175 (195)
                      ..|.||||.     ....||.||..
T Consensus         2 ~~C~~CGy~y~~~~~~~~CP~Cg~~   26 (33)
T cd00350           2 YVCPVCGYIYDGEEAPWVCPVCGAP   26 (33)
T ss_pred             EECCCCCCEECCCcCCCcCcCCCCc
Confidence            479999994     36699999974

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []

Probab=92.39  E-value=0.089  Score=32.69  Aligned_cols=29  Identities=24%  Similarity=0.590  Sum_probs=26.4

Q ss_pred             ccccccCCCCceeccCCCCcccChhhhhh
Q 045528          156 HFCTVCGFSANYTCVKCGMRFCCIRCQNI  184 (195)
Q Consensus       156 ~fC~VCG~~~~YtC~~Cg~ryCS~~C~~~  184 (195)
                      ++|.|-|.+++|+.|.=|.+|.++..+++
T Consensus         1 k~C~iTglpA~Y~DP~T~l~Y~n~~ayk~   29 (30)
T PF08265_consen    1 KYCDITGLPARYRDPKTGLPYANSEAYKI   29 (30)
T ss_pred             CcccccCCCccccCCCCCCcccCHHHhhc
Confidence            58999999999999999999999887764

These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional

Probab=90.35  E-value=0.14  Score=48.54  Aligned_cols=30  Identities=27%  Similarity=0.690  Sum_probs=28.5

Q ss_pred             cccccCCCCceeccCCCCcccChhhhhhhc
Q 045528          157 FCTVCGFSANYTCVKCGMRFCCIRCQNIHD  186 (195)
Q Consensus       157 fC~VCG~~~~YtC~~Cg~ryCS~~C~~~H~  186 (195)
                      .|-|||-+|-|-|-.=....||+.|...|-
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (518)
T PLN00206         30 KCVVCGRYGEYICDETDDDICSLECKQALL   59 (518)
T ss_pred             eEEEecCccceeccCCCCccccHHHHHHHH
Confidence            599999999999999999999999999886

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=87.52  E-value=0.28  Score=30.83  Aligned_cols=20  Identities=35%  Similarity=0.946  Sum_probs=15.4

Q ss_pred             ccccccCCC--C---ceeccCCCCc
Q 045528          156 HFCTVCGFS--A---NYTCVKCGMR  175 (195)
Q Consensus       156 ~fC~VCG~~--~---~YtC~~Cg~r  175 (195)
                      ..|.||||.  +   -..||.||..
T Consensus         3 ~~C~~CG~i~~g~~~p~~CP~Cg~~   27 (34)
T cd00729           3 WVCPVCGYIHEGEEAPEKCPICGAP   27 (34)
T ss_pred             EECCCCCCEeECCcCCCcCcCCCCc
Confidence            479999984  3   3599999974

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=87.14  E-value=0.31  Score=33.00  Aligned_cols=11  Identities=27%  Similarity=0.924  Sum_probs=6.4

Q ss_pred             CceeccCCCCc
Q 045528          165 ANYTCVKCGMR  175 (195)
Q Consensus       165 ~~YtC~~Cg~r  175 (195)
                      ..++||.||+.
T Consensus        33 ~~w~CP~C~a~   43 (47)
T PF00301_consen   33 DDWVCPVCGAP   43 (47)
T ss_dssp             TT-B-TTTSSB
T ss_pred             CCCcCcCCCCc
Confidence            46688888864

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>PRK00420 hypothetical protein; Validated

Probab=85.98  E-value=0.44  Score=37.76  Aligned_cols=21  Identities=29%  Similarity=0.816  Sum_probs=16.9

Q ss_pred             ccccccCC------CCceeccCCCCcc
Q 045528          156 HFCTVCGF------SANYTCVKCGMRF  176 (195)
Q Consensus       156 ~fC~VCG~------~~~YtC~~Cg~ry  176 (195)
                      ..|+|||+      .|.+-||.||..+
T Consensus        24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~   50 (112)
T PRK00420         24 KHCPVCGLPLFELKDGEVVCPVHGKVY   50 (112)
T ss_pred             CCCCCCCCcceecCCCceECCCCCCee
Confidence            47999997      3577999999854

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=85.42  E-value=0.47  Score=32.46  Aligned_cols=10  Identities=30%  Similarity=1.022  Sum_probs=7.1

Q ss_pred             ceeccCCCCc
Q 045528          166 NYTCVKCGMR  175 (195)
Q Consensus       166 ~YtC~~Cg~r  175 (195)
                      .++||.||..
T Consensus        34 ~w~CP~C~a~   43 (50)
T cd00730          34 DWVCPVCGAG   43 (50)
T ss_pred             CCCCCCCCCc
Confidence            4588888763

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=82.10  E-value=0.7  Score=38.88  Aligned_cols=21  Identities=33%  Similarity=0.899  Sum_probs=16.5

Q ss_pred             cccccccCC--CC--ceeccCCCCc
Q 045528          155 RHFCTVCGF--SA--NYTCVKCGMR  175 (195)
Q Consensus       155 r~fC~VCG~--~~--~YtC~~Cg~r  175 (195)
                      ...|.||||  .|  .-.||-||.+
T Consensus       134 ~~vC~vCGy~~~ge~P~~CPiCga~  158 (166)
T COG1592         134 VWVCPVCGYTHEGEAPEVCPICGAP  158 (166)
T ss_pred             EEEcCCCCCcccCCCCCcCCCCCCh
Confidence            469999999  33  4499999975

>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=81.75  E-value=1.2  Score=44.00  Aligned_cols=28  Identities=21%  Similarity=0.576  Sum_probs=21.4

Q ss_pred             CeEEEEeCCCCCCCCcccccccCCCCc--eeccCCCC
Q 045528          140 SYLRAAVGPPSKTSRRHFCTVCGFSAN--YTCVKCGM  174 (195)
Q Consensus       140 ~Y~~a~a~ps~~~P~r~fC~VCG~~~~--YtC~~Cg~  174 (195)
                      .|++.       -|....|..|||.|.  ++||.||.
T Consensus       551 ~Y~si-------n~~~~~C~~CGy~g~~~~~CP~CG~  580 (618)
T PRK14704        551 GYGSI-------NHPVDRCKCCSYHGVIGNECPSCGN  580 (618)
T ss_pred             ceEEe-------CCCCeecCCCCCCCCcCccCcCCCC
Confidence            47773       334569999999775  59999995

>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase

Probab=81.54  E-value=1  Score=44.01  Aligned_cols=30  Identities=27%  Similarity=0.725  Sum_probs=22.5

Q ss_pred             CCeEEEEeCCCCCCCCcccccccCCCCce---eccCCCCc
Q 045528          139 PSYLRAAVGPPSKTSRRHFCTVCGFSANY---TCVKCGMR  175 (195)
Q Consensus       139 p~Y~~a~a~ps~~~P~r~fC~VCG~~~~Y---tC~~Cg~r  175 (195)
                      -.|++.       -|....|..|||.|..   .||.||..
T Consensus       515 i~Y~~~-------n~~~~~C~~CG~~g~~~~~~CP~Cgs~  547 (579)
T TIGR02487       515 IGYFGI-------NPPVDVCEDCGYTGEGLNDKCPKCGSH  547 (579)
T ss_pred             CceEEe-------ccCCccCCCCCCCCCCCCCcCcCCCCc
Confidence            348773       3334699999998865   79999965

This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=80.73  E-value=0.77  Score=26.62  Aligned_cols=19  Identities=32%  Similarity=0.929  Sum_probs=11.0

Q ss_pred             cccccCC---CCceeccCCCCc
Q 045528          157 FCTVCGF---SANYTCVKCGMR  175 (195)
Q Consensus       157 fC~VCG~---~~~YtC~~Cg~r  175 (195)
                      ||..||.   .+.--|+.||.+
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCCc
Confidence            4666775   223357777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	3e-05
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	5e-04

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 56

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 144 AAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDD 187
            + G          C +C     Y C  C + +C + C   H +
Sbjct: 1   GSSGSSGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKE 44

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Length = 59

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 148 PPSKTSRRHFCTVCGFS-ANYTCVKCGMRFCCIRCQNIH 185
                    FC       A YTC +C   +C +RC   H
Sbjct: 7   GMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	99.31
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	99.24
2yqp_A	60	Probable ATP-dependent RNA helicase DDX59; structu	96.39
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	96.11
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	95.65
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	95.63
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	95.6
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	95.3
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	90.43
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	89.1
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	87.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	87.67
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	87.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	85.76
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	84.94
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	83.48
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	82.64

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=7.3e-13  Score=91.77  Aligned_cols=40  Identities=23%  Similarity=0.725  Sum_probs=35.9

Q ss_pred             CCCcccccccCCCCceeccCCCCcccChhhhhhhcccccCc
Q 045528          152 TSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLK  192 (195)
Q Consensus       152 ~P~r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~~H~EtRC~K  192 (195)
                      .....||.|||.+++|+||+|+++|||+.|++.|+++ |..
T Consensus         9 ~~~~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk~~-C~~   48 (56)
T 2yqq_A            9 KCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQ-CNP   48 (56)
T ss_dssp             CCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHHHHH-CCC
T ss_pred             CCCCCccCcCcCCCeeeCCCCCCCeeCHHHHHHHHhh-CcC
Confidence            3344699999999999999999999999999999998 964

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=99.24  E-value=1.8e-12  Score=90.67  Aligned_cols=44  Identities=30%  Similarity=0.795  Sum_probs=35.7

Q ss_pred             CCCCCCCcccccccC----CCCceeccCCCCcccChhhhhhhcccccC-ccc
Q 045528          148 PPSKTSRRHFCTVCG----FSANYTCVKCGMRFCCIRCQNIHDDTRCL-KFV  194 (195)
Q Consensus       148 ps~~~P~r~fC~VCG----~~~~YtC~~Cg~ryCS~~C~~~H~EtRC~-K~~  194 (195)
                      ++...| +.+|.||+    ++++|+||+||++|||+.|++.|++  |. .|+
T Consensus         5 ~s~m~~-~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk~--Cse~F~   53 (59)
T 1x4s_A            5 SSGMEP-AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT--CAENFY   53 (59)
T ss_dssp             CSSCCC-CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHCC--GGGGTS
T ss_pred             CCCCCC-CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHhH--hCHHHH
Confidence            333444 57999998    6899999999999999999999984  63 443

>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.39  E-value=0.0019  Score=44.97  Aligned_cols=32  Identities=31%  Similarity=0.764  Sum_probs=29.0

Q ss_pred             cccccccCCCCceeccCCCCcccChhhhhhhc
Q 045528          155 RHFCTVCGFSANYTCVKCGMRFCCIRCQNIHD  186 (195)
Q Consensus       155 r~fC~VCG~~~~YtC~~Cg~ryCS~~C~~~H~  186 (195)
                      -.+|.|||-+|.|-|-.=....||+.|-..|-
T Consensus        19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l   50 (60)
T 2yqp_A           19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHL   50 (60)
T ss_dssp             SCCCSSSSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CceEEEecCccceeecCCCcchhhHHHHHHHH
Confidence            34799999999999999999999999988764

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=96.11  E-value=0.0027  Score=43.28  Aligned_cols=33  Identities=33%  Similarity=0.681  Sum_probs=28.5

Q ss_pred             cccccccCCCCceeccCCC-CcccChhhhhhhcc
Q 045528          155 RHFCTVCGFSANYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       155 r~fC~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      ...|.+||.++..+|.+|. ..|||..|...|..
T Consensus        17 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~   50 (64)
T 2odd_A           17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   50 (64)
T ss_dssp             SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHH
T ss_pred             CCcCccccCCCcccCCCCCChhhCCHHHHHHHHH
Confidence            4589999999999999995 57999999987654

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=95.65  E-value=0.0077  Score=40.68  Aligned_cols=33  Identities=33%  Similarity=0.682  Sum_probs=28.6

Q ss_pred             cccccccCCCCceeccCCCC-cccChhhhhhhcc
Q 045528          155 RHFCTVCGFSANYTCVKCGM-RFCCIRCQNIHDD  187 (195)
Q Consensus       155 r~fC~VCG~~~~YtC~~Cg~-ryCS~~C~~~H~E  187 (195)
                      ...|.+||.++..+|.+|.. .|||..|...|..
T Consensus        15 ~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~   48 (60)
T 2dj8_A           15 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   48 (60)
T ss_dssp             SCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH
T ss_pred             CcccccCCCCCcccCCCCCCEeeeCHHHHHHHHH
Confidence            35999999999999999965 8999999987654

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=95.63  E-value=0.0057  Score=39.77  Aligned_cols=32  Identities=28%  Similarity=0.640  Sum_probs=28.0

Q ss_pred             ccccccCCCCceeccCCCC-cccChhhhhhhcc
Q 045528          156 HFCTVCGFSANYTCVKCGM-RFCCIRCQNIHDD  187 (195)
Q Consensus       156 ~fC~VCG~~~~YtC~~Cg~-ryCS~~C~~~H~E  187 (195)
                      ..|.+||.++...|.+|.. .|||..|...|..
T Consensus        10 ~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~   42 (52)
T 2jw6_A           10 QSCVNCGREAMSECTGCHKVNYCSTFCQRKDWK   42 (52)
T ss_dssp             -CCSSSSSSCSEECTTTCSSEESSHHHHHHHTT
T ss_pred             CcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHH
Confidence            4899999999999999965 7999999988765

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=95.60  E-value=0.0053  Score=41.56  Aligned_cols=32  Identities=34%  Similarity=0.704  Sum_probs=27.7

Q ss_pred             ccccccCCCCceeccCCC-CcccChhhhhhhcc
Q 045528          156 HFCTVCGFSANYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       156 ~fC~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      .+|.+||.++..+|.+|. ..|||..|...|..
T Consensus        14 ~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~   46 (60)
T 2od1_A           14 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   46 (60)
T ss_dssp             SCCTTTSSCCCEECTTTSCCEESSHHHHHHHHH
T ss_pred             CccccCCCcccccCCCCCCeeecCHHHHHHHHH
Confidence            489999999999999996 57999999776554

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=95.30  E-value=0.0099  Score=41.75  Aligned_cols=33  Identities=33%  Similarity=0.826  Sum_probs=29.0

Q ss_pred             cccccccCCCCceeccCCC-CcccChhhhhhhcc
Q 045528          155 RHFCTVCGFSANYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       155 r~fC~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      ..+|.+||.++...|.+|. .+|||..|+..|..
T Consensus        15 ~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~   48 (70)
T 2d8q_A           15 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE   48 (70)
T ss_dssp             CCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHH
T ss_pred             CCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHH
Confidence            4599999999999999996 57999999988865

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=90.43  E-value=0.11  Score=33.70  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             ccccccCC--------------CCceeccCCCCcccChhhhhhhcccc
Q 045528          156 HFCTVCGF--------------SANYTCVKCGMRFCCIRCQNIHDDTR  189 (195)
Q Consensus       156 ~fC~VCG~--------------~~~YtC~~Cg~ryCS~~C~~~H~EtR  189 (195)
                      .-|.+||.              ...|.|..||..|-...-...|++||
T Consensus        15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~~~~~tr   62 (62)
T 1vd4_A           15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDAR   62 (62)
T ss_dssp             EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCSCCCCCC
T ss_pred             ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccccccccCC
Confidence            57999997              35799999999998888777887776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=89.10  E-value=0.16  Score=45.83  Aligned_cols=32  Identities=25%  Similarity=0.601  Sum_probs=26.4

Q ss_pred             cccccccCC--CCceeccCCCC-cccChhhhhhhc
Q 045528          155 RHFCTVCGF--SANYTCVKCGM-RFCCIRCQNIHD  186 (195)
Q Consensus       155 r~fC~VCG~--~~~YtC~~Cg~-ryCS~~C~~~H~  186 (195)
                      ...|..|+.  .+-+.|.+|+. +|||..|+..|.
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w   83 (433)
T 3qww_A           49 GHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDW   83 (433)
T ss_dssp             TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHH
T ss_pred             CCcCCcccccCCCCCCCCCCcceeecChhhhhhhh
Confidence            458999996  46789999987 999999996543

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=87.89  E-value=0.22  Score=33.70  Aligned_cols=10  Identities=30%  Similarity=1.085  Sum_probs=7.9

Q ss_pred             ceeccCCCCc
Q 045528          166 NYTCVKCGMR  175 (195)
Q Consensus       166 ~YtC~~Cg~r  175 (195)
                      .++||.||..
T Consensus        36 dw~CP~Cg~~   45 (54)
T 4rxn_A           36 DWVCPLCGVG   45 (54)
T ss_dssp             TCBCTTTCCB
T ss_pred             CCcCcCCCCc
Confidence            4689999974

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=87.67  E-value=0.22  Score=44.51  Aligned_cols=30  Identities=23%  Similarity=0.784  Sum_probs=25.7

Q ss_pred             ccccccCC--CCceeccCCCC-cccChhhhhhh
Q 045528          156 HFCTVCGF--SANYTCVKCGM-RFCCIRCQNIH  185 (195)
Q Consensus       156 ~fC~VCG~--~~~YtC~~Cg~-ryCS~~C~~~H  185 (195)
                      ..|..|+.  .+...|.+|+. +|||..|+..|
T Consensus        48 ~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~   80 (429)
T 3qwp_A           48 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKA   80 (429)
T ss_dssp             TBCTTTCCBCSSCEECTTTSCCEESSHHHHHHT
T ss_pred             CcCcCCCCcCCCCCcCCCCCCcccCChhhhhhh
Confidence            48999996  55779999987 99999999754

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=87.20  E-value=0.22  Score=32.66  Aligned_cols=21  Identities=33%  Similarity=1.107  Sum_probs=15.8

Q ss_pred             cccccccCC-C----C----------ceeccCCCCc
Q 045528          155 RHFCTVCGF-S----A----------NYTCVKCGMR  175 (195)
Q Consensus       155 r~fC~VCG~-~----~----------~YtC~~Cg~r  175 (195)
                      ...|.|||| .    |          .++||.||..
T Consensus         4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence            457999998 2    2          4599999974

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=85.76  E-value=0.31  Score=44.59  Aligned_cols=31  Identities=23%  Similarity=0.564  Sum_probs=25.5

Q ss_pred             cccccccCC--CCceeccCCCC-cccChhhhhhh
Q 045528          155 RHFCTVCGF--SANYTCVKCGM-RFCCIRCQNIH  185 (195)
Q Consensus       155 r~fC~VCG~--~~~YtC~~Cg~-ryCS~~C~~~H  185 (195)
                      ..+|..|+.  .+...|.+|+. .|||..|+..|
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~   82 (490)
T 3n71_A           49 NFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDA   82 (490)
T ss_dssp             TTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHH
T ss_pred             CCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhh
Confidence            359999975  55779999987 69999999754

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=84.94  E-value=0.42  Score=31.60  Aligned_cols=35  Identities=23%  Similarity=0.574  Sum_probs=22.7

Q ss_pred             CeEEEEeCCCCCCCCcccccccCC-------CCceeccCCCCcc
Q 045528          140 SYLRAAVGPPSKTSRRHFCTVCGF-------SANYTCVKCGMRF  176 (195)
Q Consensus       140 ~Y~~a~a~ps~~~P~r~fC~VCG~-------~~~YtC~~Cg~ry  176 (195)
                      .|.... .- .....+.||+.||-       ...+.|.+||--|
T Consensus         6 ~~y~v~-~~-kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~   47 (50)
T 3j20_Y            6 KLYEIK-DG-KVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTE   47 (50)
T ss_dssp             CCCEEC-SS-CEECSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred             eEEEEE-CC-EEEEecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence            455554 22 23345679999996       3477999998643

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=83.48  E-value=0.57  Score=32.87  Aligned_cols=31  Identities=29%  Similarity=0.777  Sum_probs=22.6

Q ss_pred             CCCCCCCcccccccCC-CC--ceeccCCCCcccCh
Q 045528          148 PPSKTSRRHFCTVCGF-SA--NYTCVKCGMRFCCI  179 (195)
Q Consensus       148 ps~~~P~r~fC~VCG~-~~--~YtC~~Cg~ryCS~  179 (195)
                      |+...+...-|..|+. ++  .|.| +||.-||+.
T Consensus         8 ~~~~~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~   41 (64)
T 1wg2_A            8 PSRPVRPNNRCFSCNKKVGVMGFKC-KCGSTFCGS   41 (64)
T ss_dssp             SSCCSCCSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred             CCCCCCcCCcChhhCCcccccCeEe-ecCCEeccc
Confidence            3333334457999997 45  5899 999999985

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=82.64  E-value=0.78  Score=33.05  Aligned_cols=28  Identities=29%  Similarity=0.810  Sum_probs=20.9

Q ss_pred             CCCcccccccCC-CC--ceeccCCCCcccChh
Q 045528          152 TSRRHFCTVCGF-SA--NYTCVKCGMRFCCIR  180 (195)
Q Consensus       152 ~P~r~fC~VCG~-~~--~YtC~~Cg~ryCS~~  180 (195)
                      .....-|..|+. ++  .|.| +||.-||+..
T Consensus        22 k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~H   52 (74)
T 1wfp_A           22 KSTATRCLSCNKKVGVTGFKC-RCGSTFCGTH   52 (74)
T ss_dssp             TCCCCBCSSSCCBCTTTCEEC-TTSCEECTTT
T ss_pred             cccCccchhhcCcccccceEe-ccCCEecccc
Confidence            333457999985 33  6899 8999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1x4sa1	46	g.85.1.2 (A:8-53) Zinc finger HIT domain containin	7e-04

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 7e-04
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 156 HFCTVCGFS-ANYTCVKCGMRFCCIRCQNIH 185
            FC       A YTC +C   +C +RC   H
Sbjct: 8   GFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	98.97
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	97.42
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	96.93
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	96.9
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	89.29
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	88.49
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	86.55
d1y0jb1	36	U-shaped transcription factor, different fingers {	86.41
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	86.32
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	83.57
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	83.41
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	83.29
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	82.28
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	80.69

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.8e-11  Score=77.41  Aligned_cols=36  Identities=36%  Similarity=0.990  Sum_probs=32.0

Q ss_pred             ccccccCC-CCceeccCCCCcccChhhhhhhccccc-Ccc
Q 045528          156 HFCTVCGF-SANYTCVKCGMRFCCIRCQNIHDDTRC-LKF  193 (195)
Q Consensus       156 ~fC~VCG~-~~~YtC~~Cg~ryCS~~C~~~H~EtRC-~K~  193 (195)
                      .+|.||+. .++|+||+|+.+|||+.|++.|++  | .+|
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~Hk~--Cse~F   45 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT--CAENF   45 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCCEESSHHHHHHHCC--GGGGT
T ss_pred             ccChhhhCccccccCCCCCCceechHHHhhhhh--ccccc
Confidence            48999997 889999999999999999999986  6 444

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.4e-05  Score=49.52  Aligned_cols=35  Identities=31%  Similarity=0.787  Sum_probs=30.5

Q ss_pred             CCcccccccCCCCceeccCCC-CcccChhhhhhhcc
Q 045528          153 SRRHFCTVCGFSANYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       153 P~r~fC~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      |.+..|..||..+..+|.+|+ .+|||..|+..|..
T Consensus         6 p~~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~   41 (47)
T d2dana1           6 PERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE   41 (47)
T ss_dssp             CCCCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHH
T ss_pred             CCCCcCcCCCChhhccCCCCCCEeeCCHHHHHHHHH
Confidence            334579999999999999997 79999999998875

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00018  Score=45.87  Aligned_cols=32  Identities=34%  Similarity=0.689  Sum_probs=28.9

Q ss_pred             ccccccCCCCceeccCC-CCcccChhhhhhhcc
Q 045528          156 HFCTVCGFSANYTCVKC-GMRFCCIRCQNIHDD  187 (195)
Q Consensus       156 ~fC~VCG~~~~YtC~~C-g~ryCS~~C~~~H~E  187 (195)
                      ..|.+||..+...|.+| +..|||..|+..|..
T Consensus         9 ~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~   41 (47)
T d2dj8a1           9 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWE   41 (47)
T ss_dssp             CCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH
T ss_pred             CcCCCCCccccccCCCCCCeeeCCHHHHHHHHH
Confidence            58999999999999999 689999999998764

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00021  Score=43.73  Aligned_cols=30  Identities=30%  Similarity=0.733  Sum_probs=27.5

Q ss_pred             ccccCCCCceeccCCC-CcccChhhhhhhcc
Q 045528          158 CTVCGFSANYTCVKCG-MRFCCIRCQNIHDD  187 (195)
Q Consensus       158 C~VCG~~~~YtC~~Cg-~ryCS~~C~~~H~E  187 (195)
                      |.+||..+...|.+|. ..|||..|+..|..
T Consensus         2 C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~   32 (38)
T d2jw6a1           2 CVNCGREAMSECTGCHKVNYCSTFCQRKDWK   32 (38)
T ss_dssp             CSSSSSSCSEECTTTCSSEESSHHHHHHHTT
T ss_pred             ccccCccccccCCCCCCEeeCCHHHHHHHHH
Confidence            8999999999999996 59999999999875

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=89.29  E-value=0.061  Score=32.34  Aligned_cols=21  Identities=29%  Similarity=0.839  Sum_probs=15.2

Q ss_pred             cccccccCC--CCc--eeccCCCCc
Q 045528          155 RHFCTVCGF--SAN--YTCVKCGMR  175 (195)
Q Consensus       155 r~fC~VCG~--~~~--YtC~~Cg~r  175 (195)
                      ...|.||||  .|.  -.||-||..
T Consensus         5 ~~vC~vCGyi~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           5 FHLCPICGYIHKGEDFEKCPICFRP   29 (36)
T ss_dssp             EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred             EEECCCCCCEeeCCCCCcCCCCCCc
Confidence            358999998  332  389999864

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.49  E-value=0.086  Score=31.77  Aligned_cols=21  Identities=29%  Similarity=0.831  Sum_probs=15.6

Q ss_pred             cccccccCC--CC--ceeccCCCCc
Q 045528          155 RHFCTVCGF--SA--NYTCVKCGMR  175 (195)
Q Consensus       155 r~fC~VCG~--~~--~YtC~~Cg~r  175 (195)
                      ...|.||||  .|  -..||-||..
T Consensus         5 ~~~C~vCG~i~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           5 VYICPICGYTAVDEAPEYCPVCGAP   29 (37)
T ss_dssp             EEECTTTCCEEESCCCSBCTTTCCB
T ss_pred             EEECCCCCCEecCCCCCcCCCCCCc
Confidence            358999998  33  3489999874

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=86.55  E-value=0.13  Score=35.06  Aligned_cols=22  Identities=27%  Similarity=0.834  Sum_probs=17.5

Q ss_pred             CcccccccCC----------------------CCceeccCCCCc
Q 045528          154 RRHFCTVCGF----------------------SANYTCVKCGMR  175 (195)
Q Consensus       154 ~r~fC~VCG~----------------------~~~YtC~~Cg~r  175 (195)
                      .+..|.+|||                      +..++||.||+.
T Consensus         6 ~ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~   49 (70)
T d1dx8a_           6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             CeEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCc
Confidence            3568999998                      467899999874

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.41  E-value=0.21  Score=29.57  Aligned_cols=29  Identities=24%  Similarity=0.639  Sum_probs=25.1

Q ss_pred             CCceeccCCCCcccChhhhhhhcccccCc
Q 045528          164 SANYTCVKCGMRFCCIRCQNIHDDTRCLK  192 (195)
Q Consensus       164 ~~~YtC~~Cg~ryCS~~C~~~H~EtRC~K  192 (195)
                      ++.+-|+-||.||-|..=++.|+..-|..
T Consensus         6 parf~c~pcgirfss~stleahqtyycsh   34 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQAYYCSH   34 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTTTTTCS
T ss_pred             ccceeccccceeecChhHHHhhhheeeec
Confidence            56678889999999999999999988854

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.32  E-value=0.12  Score=33.34  Aligned_cols=12  Identities=25%  Similarity=0.847  Sum_probs=8.9

Q ss_pred             CCceeccCCCCc
Q 045528          164 SANYTCVKCGMR  175 (195)
Q Consensus       164 ~~~YtC~~Cg~r  175 (195)
                      +..++||.||..
T Consensus        33 P~dw~CP~C~a~   44 (53)
T d1brfa_          33 PDDWVCPICGAP   44 (53)
T ss_dssp             CTTCBCTTTCCB
T ss_pred             CCCCCCcCCCCc
Confidence            457789988864

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.57  E-value=0.33  Score=33.25  Aligned_cols=27  Identities=26%  Similarity=0.909  Sum_probs=20.7

Q ss_pred             CCcccccccCC---CCceeccCCCCcccChh
Q 045528          153 SRRHFCTVCGF---SANYTCVKCGMRFCCIR  180 (195)
Q Consensus       153 P~r~fC~VCG~---~~~YtC~~Cg~ryCS~~  180 (195)
                      +.+.-|.+|+.   .-.|+| +||..||+..
T Consensus        23 ~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~H   52 (74)
T d1wfla_          23 PKKNRCFMCRKKVGLTGFDC-RCGNLFCGLH   52 (74)
T ss_dssp             SCTTBCSSSCCBCGGGCEEC-TTSCEECSSS
T ss_pred             CCCCcChhhCCcccceeeEc-cCCCEehhhc
Confidence            34457999984   336899 7999999964

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=83.41  E-value=0.2  Score=31.28  Aligned_cols=21  Identities=33%  Similarity=1.148  Sum_probs=15.9

Q ss_pred             cccccccCCC---------------CceeccCCCCc
Q 045528          155 RHFCTVCGFS---------------ANYTCVKCGMR  175 (195)
Q Consensus       155 r~fC~VCG~~---------------~~YtC~~Cg~r  175 (195)
                      +..|.||||.               ..++||.||..
T Consensus         3 ~y~C~~CgyiYd~~~Gdgt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             CeEeCCCCeEECcccCCCCCHHHCCCCCCCcCCCCc
Confidence            3579999972               46689999874

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.29  E-value=0.24  Score=31.87  Aligned_cols=11  Identities=27%  Similarity=0.978  Sum_probs=8.3

Q ss_pred             CceeccCCCCc
Q 045528          165 ANYTCVKCGMR  175 (195)
Q Consensus       165 ~~YtC~~Cg~r  175 (195)
                      ..++||.||+.
T Consensus        35 ~dw~CP~C~a~   45 (53)
T d1iroa_          35 DDWVCPLCGVG   45 (53)
T ss_dssp             TTCBCTTTCCB
T ss_pred             CCCCCcCCCCc
Confidence            56789988874

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.34  Score=28.83  Aligned_cols=23  Identities=26%  Similarity=0.739  Sum_probs=20.0

Q ss_pred             cccccCCCCce--eccCCCCcccCh
Q 045528          157 FCTVCGFSANY--TCVKCGMRFCCI  179 (195)
Q Consensus       157 fC~VCG~~~~Y--tC~~Cg~ryCS~  179 (195)
                      .|..||+...|  .|-.||.-|-+.
T Consensus         4 ~CP~C~~~~a~GDqCe~CG~~~~p~   28 (35)
T d1pfva3           4 TCPKCKSPDQYGDNCEVCGATYSPT   28 (35)
T ss_dssp             ECTTTCCSSEETTBCTTTCCBCCGG
T ss_pred             ECCCCCCcccccccHHHcCCcCCHH
Confidence            59999999988  999999988654

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.22  Score=32.95  Aligned_cols=36  Identities=31%  Similarity=0.839  Sum_probs=26.5

Q ss_pred             cccccccCC-----CC--ceeccCCCCcccChhhhhh----hcccccC
Q 045528          155 RHFCTVCGF-----SA--NYTCVKCGMRFCCIRCQNI----HDDTRCL  191 (195)
Q Consensus       155 r~fC~VCG~-----~~--~YtC~~Cg~ryCS~~C~~~----H~EtRC~  191 (195)
                      .++|.-||+     .+  ..+|+.||..||-. |...    |..-.|.
T Consensus        18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~-C~~~w~~~H~~~tC~   64 (73)
T d2ct7a1          18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVR-CKRQWEEQHRGRSCE   64 (73)
T ss_dssp             EECCSSSCCCEECCCSCSCEECTTTCCEECSS-SCSBCCTTTTTSCHH
T ss_pred             CCCCCCCCCEeEECCCCCEEEcCCCCCeECcc-cCcchhcCCCCCCHH
Confidence            457888877     22  45999999999976 7765    7776774