Citrus Sinensis ID: 045543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEcccccccHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHcccHHHHHcccccccccccccccccccEEcccccEEEEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccEcHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEcccccccHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEccccccccccccEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHccccccccEEEEEEHcEEEEEEcc
Coil and Loop (DISEMBL)
MGVFEIMAkagpraklSAAEIEaqmpshnpnaAVMLDRVLRRSlssagddrrlQRLAPVAKYVLHYGigdyehagldsRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVdvgggcgkcgWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCyeaipgngkiiiidsttvvipeatpatreasSIDIIMLMQLSGEKERTKQEYYGMALtakngfkgvnyeSFVCNFYIMEFIK
Flexible Loop (DISEMBL)
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLssagddrrlqrLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAtpatreassidIIMLMQLSGEKERTKQEYYGMALtakngfkgvnYESFVCNFYIMEFIK
Low Complexity Region (SEG)
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Disordered region (IsUnstruct)
****************************************************LQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG***RTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI*
Disordered Region (DISOPRED)
MGVFEIMAKAGPRAKLSAA*******SHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Disordered Region (DISEMBL)
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Disordered Region (DISPRO)
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
A9X7L0	364	Anthranilate N-methyltran	N/A	no	0.987	0.648	0.352	3e-48
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.649	0.358	4e-47
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.649	0.351	9e-47
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.983	0.643	0.346	8e-46
Q8GU25	365	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.649	0.342	3e-45
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.983	0.643	0.343	3e-45
Q43239	354	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.669	0.332	1e-44
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.660	0.339	2e-44
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.983	0.642	0.337	4e-44
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.991	0.640	0.345	7e-44

>sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 165/321 (51%), Gaps = 85/321 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS--------SAGDDRR 52
           +GVFEI+AKA P  +LSA+EI   + + NP A VMLDR+LR  +S        S     R
Sbjct: 47  LGVFEIIAKA-PGGRLSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGER 105

Query: 53  LQRLAPVAKYVLH----------------------------------------YGIGDYE 72
           L  L  V+KY +                                         +G+  +E
Sbjct: 106 LYGLTSVSKYFVPDQDGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFE 165

Query: 73  HAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------------ 120
           +A  +S+F++  + AM +H++I + RIL++YKGFE + +LVDVGGG G            
Sbjct: 166 YASSNSKFSDTYHRAMFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPH 225

Query: 121 ----------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCY 158
                                   G  MF+ +  GDAILMK IL  WDDE CL +LKNCY
Sbjct: 226 IQAINFDLPHVVQDAASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCY 285

Query: 159 EAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218
           +A P NGK+I+++S     PE + + RE S +D++++ +  G +ERT++E+  +A+ A  
Sbjct: 286 KATPENGKVIVMNSVVPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGA-- 343

Query: 219 GFKGVNYESFVCNFYIMEFIK 239
           GFKG+N+   VCN +IMEF K
Sbjct: 344 GFKGINFACCVCNLHIMEFFK 364

Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others.
Ruta graveolens (taxid: 37565)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  187 bits (476), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 157/324 (48%), Gaps = 87/324 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR---------SLSSAGDDR 51
           + + EI+AKAGP A++S  EI +Q+P+ NP+A VMLDR+LR          S+ +  D +
Sbjct: 42  LDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGK 101

Query: 52  --RLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LA VAKY++                                         YG+ 
Sbjct: 102 VQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMT 161

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H++I M +IL+ Y GFE +K LVDVGGG G         
Sbjct: 162 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK 221

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  I   DA+ MK I  +W DEHCL  LK
Sbjct: 222 YPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 281

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCYEA+P NGK+I+ +    V P+++ AT+    ID+IML    G KERT++E+  +A  
Sbjct: 282 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKG 341

Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
           A  GF+G        N YIMEF+K
Sbjct: 342 A--GFQGFKVHCNAFNTYIMEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  186 bits (473), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 154/324 (47%), Gaps = 87/324 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR---------RSLSSAGDDR 51
           + + EIMAKAGP   LS  +I +Q+P+ NP+A VMLDR+LR          SL +  D +
Sbjct: 42  LDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGK 101

Query: 52  --RLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  L PV K++                                          YG+ 
Sbjct: 102 VERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMT 161

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H++I M +IL+ YKGFE +  +VDVGGG G         
Sbjct: 162 AFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSK 221

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  +  GDAI MK I  +W DEHCL  LK
Sbjct: 222 YPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLK 281

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY A+P NGK+I+ +    V P+++ AT+    ID+IML    G KERT+QE+  +A  
Sbjct: 282 NCYAALPDNGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKG 341

Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
           A  GF+G N      N Y++EF+K
Sbjct: 342 A--GFQGFNVACSAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  183 bits (465), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 156/326 (47%), Gaps = 91/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           + + EIMAKAGP A LS +EI + +P+ NP+A VMLDR+LR   S +           G 
Sbjct: 42  LDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGK 101

Query: 50  DRRLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LAPV K++                                          YG+ 
Sbjct: 102 VERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAYGMT 161

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H++I M +IL+ YKGFE +  LVDVGGG G         
Sbjct: 162 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSK 221

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  + N DA+ MK I  +W D HCL  LK
Sbjct: 222 YPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLK 281

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY+A+P NGK+I+++    V P+ + AT+    +D+IML    G KERT++E+ G+A  
Sbjct: 282 NCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANG 341

Query: 216 AKNGFKGVNYESFVCNF--YIMEFIK 239
           A  GF+G  +E   C F  +++EF K
Sbjct: 342 A--GFQG--FEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 153/324 (47%), Gaps = 87/324 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR---------RSLSSAGDDR 51
           + + EIMAKAGP A LS  ++ +Q+P+ NP A VMLDR+LR          SL +  D +
Sbjct: 42  LDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGK 101

Query: 52  --RLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  L PV K++                                          YG+ 
Sbjct: 102 VERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLKDAVLDGGIPFNKAYGMT 161

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +++ G D RFN+V N  M  H++I M +IL+ YKGFE +  +VDVGGG G         
Sbjct: 162 AFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFEGLTSIVDVGGGTGAVVNMIVSK 221

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  +  GDAI MK I  +W DEHCL  LK
Sbjct: 222 YPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLK 281

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY A+P NGK+I+ +    V P+ + AT+    ID++ML    G KERT+QE+   AL 
Sbjct: 282 NCYAALPDNGKVILGECILPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFE--ALA 339

Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
             +GF+G+       N Y++EF+K
Sbjct: 340 KGSGFQGIRVACNAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Rosa chinensis (taxid: 74649)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 155/326 (47%), Gaps = 91/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           + + EIMAKAGP A LS +EI + +P+ NP+A VMLDR+LR   S +           G 
Sbjct: 42  LDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGK 101

Query: 50  DRRLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LAPV K++                                          YG+ 
Sbjct: 102 VERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMT 161

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H++I M +IL+ YKGFE +  LVDVGGG G         
Sbjct: 162 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSK 221

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  +   DA+ MK I  +W D HCL  LK
Sbjct: 222 YPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLK 281

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY+A+P NGK+I+++    V P+ + AT+    +D+IML    G KERT++E+ G+A  
Sbjct: 282 NCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKG 341

Query: 216 AKNGFKGVNYESFVCNF--YIMEFIK 239
           A  GF+G  +E   C F  +++EF K
Sbjct: 342 A--GFQG--FEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43239|COMT1_ZINEL Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 155/325 (47%), Gaps = 88/325 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPS-HNPNAAVMLDR---------VLRRSLSSAGDD 50
           + + E +AKAGP   +S++E+ AQ+P  +NP A VM+DR         VL  +L    D 
Sbjct: 32  LDLLETIAKAGPHGSVSSSELVAQLPKVNNPEAPVMIDRICSLLASYSVLTCTLKETADG 91

Query: 51  --RRLQRLAPVAKYVLH----------------------------------------YGI 68
              R   LAPV K+++                                         YG+
Sbjct: 92  CAERFYGLAPVCKFLIKNDAGVSLAPLLLMNQDKVLMESWYYLKDPVLDGGIPFNKAYGM 151

Query: 69  GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------- 120
             +E+ G D RFN+V N+ M +H+++ M +I++ Y GF  +K LVDVGGG G        
Sbjct: 152 SAFEYHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNGFSGLKTLVDVGGGTGASLNMITS 211

Query: 121 --------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLL 154
                                       G  MF+ +  GDAI MK IL +W D HCL +L
Sbjct: 212 KHKSLKGINFDLPHVIADATTYQGIEHVGGDMFESVPKGDAIFMKWILHDWSDAHCLQVL 271

Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
           KNCY+++P NGK+I+ +      P+ TPAT+    ID+IML    G KERT++E+  +A 
Sbjct: 272 KNCYKSLPENGKVIVAECILPEAPDTTPATQNVIHIDVIMLAHNPGGKERTEKEFEALAK 331

Query: 215 TAKNGFKGVNYESFVCNFYIMEFIK 239
            A  GFKG N  +   N ++MEF K
Sbjct: 332 GA--GFKGFNKAACALNTWVMEFCK 354

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Zinnia elegans (taxid: 34245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 150/324 (46%), Gaps = 87/324 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR---------SLSSAGDDR 51
           + + EIMAKAGP A +S +E+ AQ+P+ NP A VMLDR+LR          +L +  D R
Sbjct: 38  LDLLEIMAKAGPGAAISPSELAAQLPTKNPEAPVMLDRMLRLLATYSVLNCTLRTLPDGR 97

Query: 52  --RLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LAPV K +                                          YG+ 
Sbjct: 98  VERLYSLAPVCKLLTKNADGVSVAPLLLMNQDKVLMESWYHLTDAVLDGGVPFNKAYGMT 157

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H+++ M +IL+ YKGFE +  +VDVGGG G         
Sbjct: 158 AFEYHGTDPRFNKVFNRGMSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSK 217

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  +   DAI MK I  +W DEHCL  LK
Sbjct: 218 YPSIKGINFDLSHVIEDAPAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLK 277

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCYEA+P NGK+++ +      P+ + AT+ A  +DI+ML    G KERT++E+  +A  
Sbjct: 278 NCYEALPANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKG 337

Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
           A  GF G          ++MEF K
Sbjct: 338 A--GFTGFRRACCAYQTWVMEFHK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 153/326 (46%), Gaps = 91/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           + + EIMAKAGP A LS  E+ AQ+P+ NP A VMLDR+ R   S +           G 
Sbjct: 43  LDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGK 102

Query: 50  DRRLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LAPV K+++                                         YG+ 
Sbjct: 103 VERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMT 162

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN++ N  M  H++I M +IL+ YKGFE ++ +VDVGGG G         
Sbjct: 163 AFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAK 222

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  +  GDAI MK I  +W D+HC   LK
Sbjct: 223 YPSMKGINFDLPHVIEDAPPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSDDHCAKFLK 282

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY+A+P  GK+I+ +    V P+ + AT+    ID IML    G KERT++E+  +A  
Sbjct: 283 NCYDALPNIGKVIVAECVLPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKG 342

Query: 216 AKNGFKGVNYESFVCNF--YIMEFIK 239
           A  GF+G  ++   C F  ++MEF+K
Sbjct: 343 A--GFQG--FQVMCCAFGTHVMEFLK 364

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  177 bits (448), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 150/327 (45%), Gaps = 90/327 (27%)

Query: 1   MGVFEIMAKAGPR---AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA---------- 47
           + V EIMAK+ P    A +S AEI AQ+P+ NP+A VMLDRVLR   S +          
Sbjct: 44  LDVLEIMAKSIPHGSGAYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELP 103

Query: 48  -GDDRRLQRLAPVAKYVLH----------------------------------------Y 66
            G   RL  LAPV K++                                          Y
Sbjct: 104 DGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY 163

Query: 67  GIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------ 120
           G+  +E+ G D RFN+V N  M  H++I M +I + Y GFE +  +VDVGGG G      
Sbjct: 164 GMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMI 223

Query: 121 ----------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLS 152
                                         G  MF  +  GDAI MK I  +W DEHCL 
Sbjct: 224 VAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLK 283

Query: 153 LLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM 212
            LKNCY A+P +GK+I+ +    + P+ + AT+    ID IML    G KERT++E+  +
Sbjct: 284 FLKNCYAALPEHGKVIVAECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEAL 343

Query: 213 ALTAKNGFKGVNYESFVCNFYIMEFIK 239
           A+ A  GFKG        N Y+MEF+K
Sbjct: 344 AIGA--GFKGFKVACCAFNTYVMEFLK 368

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
224128073	358	catechol o-methyltransferase related [Po	0.991	0.662	0.376	4e-57
284437809	377	O-methyltransferase-like protein [Prunus	0.991	0.628	0.366	6e-54
224068173	359	catechol o-methyltransferase [Populus tr	0.991	0.660	0.365	1e-53
224068181	336	catechol o-methyltransferase [Populus tr	0.991	0.705	0.362	2e-53
255548061	359	o-methyltransferase, putative [Ricinus c	0.991	0.660	0.375	1e-51
449466440	372	PREDICTED: caffeic acid 3-O-methyltransf	0.991	0.637	0.365	8e-51
449515065	372	PREDICTED: caffeic acid 3-O-methyltransf	0.991	0.637	0.365	8e-51
388494808	362	unknown [Medicago truncatula]	0.991	0.654	0.361	6e-50
357512657	362	Caffeic acid 3-O-methyltransferase [Medi	0.991	0.654	0.361	6e-50
268528131	356	caffeic acid O-methyltransferase 3 [Goss	0.991	0.665	0.358	1e-49

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/319 (37%), Positives = 172/319 (53%), Gaps = 82/319 (25%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS------SAGDDRRLQ 54
           +G+FEI+AKAGP AKLSA+++ AQ+P+ NP+A +MLDR+LR   S      S     RL 
Sbjct: 42  LGIFEIIAKAGPDAKLSASDVAAQLPTKNPDAPMMLDRILRLLASHDVLGCSVDGSERLY 101

Query: 55  RLAPVAKYVLH----------------------------------------YGIGDYEHA 74
            LAPV+K+ +                                         +G   +E+ 
Sbjct: 102 SLAPVSKHYVRNKDGVSLGPFMALIQDNVFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYP 161

Query: 75  GLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------------ 122
           GLD RFN+V NTAM +  ++V+  +L+ Y GF+ +KQLV++GGG G              
Sbjct: 162 GLDPRFNQVFNTAMYNQTTVVLENMLEAYTGFKNLKQLVEIGGGMGHTIKAIISKYPQIK 221

Query: 123 ----------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEA 160
                                 G  MF+ +  GDAI +K IL +W D+HCL LLKNCY+A
Sbjct: 222 GINFDLPHVIEHAPSCPGVEHVGGDMFESVPKGDAIFLKWILHDWSDDHCLKLLKNCYKA 281

Query: 161 IPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF 220
           IP NGK+I+++S   +  + +PA R  S +D++M+ Q  G KERT+ E+  MAL    GF
Sbjct: 282 IPDNGKVIVMESVLSITAKTSPAARAISQLDVLMMTQNPGGKERTEHEF--MALATGAGF 339

Query: 221 KGVNYESFVCNFYIMEFIK 239
           +G+ YE+FVCNF++MEF K
Sbjct: 340 RGIKYEAFVCNFWVMEFFK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 170/327 (51%), Gaps = 90/327 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA------------G 48
           +GVF+I+A+ GP AKLS++ I A++ + NP A +M+DR+LR   S +             
Sbjct: 53  LGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVDRILRLLTSHSVLNCSAVAANGGS 112

Query: 49  DDRRLQRLAPVAKYVLH----------------------------------------YGI 68
           D +R+  L PV+KY +                                         +G+
Sbjct: 113 DFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFMESWSQLKDAVVEGGIPFNRVHGM 172

Query: 69  GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFE--KIKQLVDVGGGCG------ 120
             +E+ GLD RFN+V NTAM +H +IV+ ++L  YKG E   + QLVDVGGG G      
Sbjct: 173 HAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKGLEDKNLTQLVDVGGGLGVTLNLI 232

Query: 121 ----------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLS 152
                                         G  MF  + +GDAI MK IL +W DEHCL 
Sbjct: 233 TSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGDMFASVPSGDAIFMKWILHDWSDEHCLK 292

Query: 153 LLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM 212
           LLKNCY+AIP NGK+I++++    +PE + AT+  S +D++M+ Q  G KER++QE+  M
Sbjct: 293 LLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQLDVVMMTQNPGGKERSEQEF--M 350

Query: 213 ALTAKNGFKGVNYESFVCNFYIMEFIK 239
           AL    GF G+ YE FVCNF++MEF K
Sbjct: 351 ALATGAGFSGIRYECFVCNFWVMEFFK 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 167/320 (52%), Gaps = 83/320 (25%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRRLQ 54
           +G+FEI+AKAGP  KLSAA+I A++P+ NP+   MLDR+LR   S            R  
Sbjct: 42  LGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRLLASHQVLCCFVDGSERFY 101

Query: 55  RLAPVAKYVLH----------------------------------------YGIGDYEHA 74
            LAPV+ Y +                                         +G+  +E+ 
Sbjct: 102 SLAPVSMYFVRNQNGVSLAPFMALIHENVILQSWSQLKDAVLEGGVAFHRVHGVHAFEYN 161

Query: 75  GLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------------ 122
           GLD RFN+V NTAM +  ++V   +L+ Y GF+ +KQLVD+GGG G              
Sbjct: 162 GLDPRFNQVFNTAMYNQTTVVNGNMLEKYNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIK 221

Query: 123 ----------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEA 160
                                 G  MF+ +  GDAI +K IL NW D+HCL LLKNCY+A
Sbjct: 222 GINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKA 281

Query: 161 IPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM-QLSGEKERTKQEYYGMALTAKNG 219
           IP +GK+I+++S   +  + +PA +  S +D++M+M Q  G KERT+ E+  MAL    G
Sbjct: 282 IPEDGKVIVMESVLPITAKTSPAAKAISQLDVLMMMSQNPGGKERTEDEF--MALATAAG 339

Query: 220 FKGVNYESFVCNFYIMEFIK 239
           F+G+ +E+FVCNF++MEF K
Sbjct: 340 FRGIKFETFVCNFWVMEFFK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 168/320 (52%), Gaps = 83/320 (25%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRRLQ 54
           +G+FEI+AKAGP  KLSAA+I A++P+ NP+   MLDR+LR   S            R  
Sbjct: 19  LGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRLLASHQVLCCFVDGSERFY 78

Query: 55  RLAPVAKYVLH----------------------------------------YGIGDYEHA 74
            LAPV+ Y +                                         +G+  +E+ 
Sbjct: 79  SLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKDAVLEGGVAFHRVHGVHGFEYN 138

Query: 75  GLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------------ 122
           GLD +FN+V NTAM +  ++V   +L+ Y GF+ +KQLVD+GGG G              
Sbjct: 139 GLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDIGGGLGHTMKAITSKYPHIK 198

Query: 123 ----------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEA 160
                                 G  MF+ +  GDAI +K IL NW D+HCL LLKNCY+A
Sbjct: 199 GINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKA 258

Query: 161 IPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM-QLSGEKERTKQEYYGMALTAKNG 219
           IPG+GK+I+++S   +  + +PA +  S +D++M++ Q  G KERT+ E+  MAL    G
Sbjct: 259 IPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPGGKERTEDEF--MALATAAG 316

Query: 220 FKGVNYESFVCNFYIMEFIK 239
           F+G+ +E+FVCNF++MEF K
Sbjct: 317 FRGIKFETFVCNFWVMEFFK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 164/320 (51%), Gaps = 83/320 (25%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPS-HNPNAAVMLDRVLRRSLS------SAGDDRRL 53
           +GVFEI+AKAGP +KLSA+EI A++P   NP+AA+ LDRVLR   S      S     RL
Sbjct: 42  LGVFEIIAKAGPESKLSASEITAEIPDVQNPDAAITLDRVLRLLASHNVLGCSLNGLERL 101

Query: 54  QRLAPVAKYVL----------------------------------------HYGIGDYEH 73
             L PV+KY +                                         +G   + +
Sbjct: 102 YSLNPVSKYFVPNQDGISLGPFMALIQDKVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGY 161

Query: 74  AGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC----------- 122
           +GLDSRFN V NTAM  H ++V+ +IL+ YKGF+++KQL+DVGGG G             
Sbjct: 162 SGLDSRFNHVFNTAMFHHTNLVITKILETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHL 221

Query: 123 -----------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYE 159
                                     MF+ +  G+AI MK IL +W DEHCL LLKNCYE
Sbjct: 222 KGINFDLPHVVKYAPAIPGVEHVAGDMFESVPKGEAIFMKWILHDWSDEHCLRLLKNCYE 281

Query: 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219
           A+P +GK+I++D+   V+PE   A +     D++++    G  ERT+ E+  MA  A  G
Sbjct: 282 ALPDDGKVIVMDAVLPVMPETGKAAKANFQTDLVVMTVYEGGTERTEHEFLAMATAA--G 339

Query: 220 FKGVNYESFVCNFYIMEFIK 239
           F+G+ Y    CNF+IMEF K
Sbjct: 340 FRGIRYVCCACNFWIMEFFK 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466440|ref|XP_004150934.1| PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Cucumis sativus]

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 170/326 (52%), Gaps = 89/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           +GVFEI+AKAG  A+LS+ EI A++ + NP A++M+DR+LR   S A           G+
Sbjct: 48  LGVFEILAKAGNGAELSSTEIAAKITTTNPEASLMIDRILRLLASHAVVGCSLASDEDGN 107

Query: 50  DRRLQRLAPVAKY---------------------VLHY---------------------G 67
            +RL  L PV+KY                     +LH                      G
Sbjct: 108 VQRLYSLTPVSKYYVRNEDGVSLGPLLTLLQDKVLLHTWSELKNTVIEGGSTTFTRAYGG 167

Query: 68  IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------- 120
           +  +++ G DSRFN+V N AM++H+++ + +I+  YKGF  IKQLVDVGGG G       
Sbjct: 168 LNAFQYLGTDSRFNQVFNIAMINHSTMPIKKIVKAYKGFANIKQLVDVGGGLGITLQLIT 227

Query: 121 ---------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
                                        G  MF+KI NGDA+ MK IL +W D+HC++L
Sbjct: 228 STYPYIKGINYDLPHVIRNAPPYPGVEHVGGDMFEKIPNGDAVFMKWILHDWSDDHCITL 287

Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
           LKNCY AIP +GK+I++DS    +PE T AT+  +  D++ +    G KERT+ E+   A
Sbjct: 288 LKNCYNAIPDDGKVIVMDSILPTLPETTSATKAVAQCDMVEMTLYEGGKERTRDEF--KA 345

Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
           L AK GFK V ++  V N ++ EF+K
Sbjct: 346 LAAKAGFKRVIFQCLVANLWVTEFLK 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515065|ref|XP_004164570.1| PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Cucumis sativus]

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 170/326 (52%), Gaps = 89/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           +GVFEI+AKAG  A+LS+ EI A++ + NP A++M+DR+LR   S A           G+
Sbjct: 48  LGVFEILAKAGNGAELSSTEIAAKITTTNPEASLMIDRILRLLASHAVVGCSLASDEDGN 107

Query: 50  DRRLQRLAPVAKY---------------------VLHY---------------------G 67
            +RL  L PV+KY                     +LH                      G
Sbjct: 108 VQRLYSLTPVSKYYVRNEDGVSLGPLLTLLQDKVLLHTWSELKNTVIEGGSTTFTRAYGG 167

Query: 68  IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------- 120
           +  +++ G DSRFN+V N AM++H+++ + +I+  YKGF  IKQLVDVGGG G       
Sbjct: 168 LNAFQYLGTDSRFNQVFNIAMINHSTMPIKKIVKAYKGFANIKQLVDVGGGLGITLQLIT 227

Query: 121 ---------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
                                        G  MF+KI NGDA+ MK IL +W D+HC++L
Sbjct: 228 STYPYIKGINYDLPHVIRNAPPYPGVEHVGGDMFEKIPNGDAVFMKWILHDWSDDHCITL 287

Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
           LKNCY AIP +GK+I++DS    +PE T AT+  +  D++ +    G KERT+ E+   A
Sbjct: 288 LKNCYNAIPDDGKVIVMDSILPTLPETTSATKAVAQCDMVEMTLYEGGKERTRDEF--KA 345

Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
           L AK GFK V ++  V N ++ EF+K
Sbjct: 346 LAAKAGFKRVIFQCLVANLWVTEFLK 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494808|gb|AFK35470.1| unknown [Medicago truncatula]

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 163/326 (50%), Gaps = 89/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA------------- 47
           +GVFE++ KAG    LS+ EI +++   NP+A  MLDR+L    S +             
Sbjct: 39  LGVFEVLQKAGRDTPLSSDEIASRLSCTNPDAPKMLDRILALLASHSVLNCSVHPDQHNL 98

Query: 48  GDDRRLQRLAPVAKY--------------VLH--------------------------YG 67
           G   RL  +  VAK+               LH                          YG
Sbjct: 99  GSFHRLYAMTSVAKFFAPNSDGVSLGPLIALHQDKIYLQSWSQLKDAIREGGIPFNRVYG 158

Query: 68  IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------- 120
             D+E+A +DSRFN+V NTAM++H +IVMN++L  YKGFE +K+LVDVGGG G       
Sbjct: 159 TNDFEYASIDSRFNQVFNTAMINHTTIVMNKVLQSYKGFEDVKRLVDVGGGLGVNVNLIT 218

Query: 121 ---------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
                                        G  MF+ +   DAI MK IL +W DE CL L
Sbjct: 219 SKHPHIHGINFDLPHVIQHAPSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDEQCLKL 278

Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
           LKNCY+AIP +GK+I++++   +IPE   A + A+  D++M+ Q  G KERT+QE+  M 
Sbjct: 279 LKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKFAAQSDVLMMTQSPGGKERTEQEF--MD 336

Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
           L    GF G+ YE +V  F++MEF K
Sbjct: 337 LANGAGFSGIRYECYVHTFWVMEFFK 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 163/326 (50%), Gaps = 89/326 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA------------- 47
           +GVFE++ KAG    LS+ EI +++   NP+A  MLDR+L    S +             
Sbjct: 39  LGVFEVLQKAGRDTPLSSDEIASRLSCTNPDAPKMLDRILALLASHSVLNCSVHPDQHNL 98

Query: 48  GDDRRLQRLAPVAKY--------------VLH--------------------------YG 67
           G   RL  +  VAK+               LH                          YG
Sbjct: 99  GSFHRLYAMTSVAKFFAPNSDGVSLGPLIALHQDKIYLQSWSQLKDAIREGGIPFNRVYG 158

Query: 68  IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------- 120
             D+E+A +DSRFN+V NTAM++H +IVMN++L  YKGFE +K+LVDVGGG G       
Sbjct: 159 TNDFEYASIDSRFNQVFNTAMINHTTIVMNKVLQSYKGFEDVKRLVDVGGGLGVNINLIT 218

Query: 121 ---------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
                                        G  MF+ +   DAI MK IL +W DE CL L
Sbjct: 219 SKHPHIHGINFDLPHVIQHAPSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDEQCLKL 278

Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
           LKNCY+AIP +GK+I++++   +IPE   A + A+  D++M+ Q  G KERT+QE+  M 
Sbjct: 279 LKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKFAAQSDVLMMTQSPGGKERTEQEF--MD 336

Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
           L    GF G+ YE +V  F++MEF K
Sbjct: 337 LANGAGFSGIRYECYVHTFWVMEFFK 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 159/324 (49%), Gaps = 87/324 (26%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSA-----------GD 49
           + +F IMAK GP AKLSA EI AQ+ ++N  AA MLDR+L    S             G+
Sbjct: 35  LDIFGIMAKCGPDAKLSAKEIAAQLATNNSEAASMLDRILLLLASHGIVGCSVVDEEKGN 94

Query: 50  DRRLQRLAPVAKYVLH----------------------------------------YGIG 69
            R+L  L PV+K+ +                                         +G  
Sbjct: 95  PRKLYSLTPVSKFFVRNEDGVSLGPLMALLQDKVFIDSWSQLKDAIIEGGVPFDRVHGSN 154

Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN++ NTAM++H S+V+  IL  YKGF+++  LVDVGGG G         
Sbjct: 155 TFEYPGKDPRFNQIFNTAMINHTSLVLKEILHNYKGFQQLSSLVDVGGGLGITLNLITSK 214

Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF+ +  G AI MK IL +W  +HCL LLK
Sbjct: 215 YPSIKGINFDLPHVIQHAPAYPGVQHVGRDMFESVPKGAAIFMKWILHDWSGDHCLKLLK 274

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCY AIP +GK+I++++    +PEA    R  + +D++ML Q  G KERTK E+   AL 
Sbjct: 275 NCYNAIPKDGKVIVVEAVVPDVPEANAYLRSITQVDMVMLAQDPGGKERTKSEFE--ALA 332

Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
            K GF G+ YE F C+++IMEF K
Sbjct: 333 TKAGFSGIRYECFACSYWIMEFFK 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.502	0.333	0.434	2e-45
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.489	0.322	0.385	1.1e-43
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.489	0.317	0.420	5.6e-38
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.481	0.316	0.393	3.8e-33
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.468	0.293	0.347	9.7e-33
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.468	0.293	0.347	1.6e-31
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.468	0.297	0.396	3e-31
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.497	0.319	0.317	3.2e-30
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.468	0.296	0.382	1.2e-29
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.372	0.233	0.41	1.6e-26

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 271 (100.5 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
 Identities = 53/122 (43%), Positives = 76/122 (62%)

Query:   118 GCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI 177
             G    G  MFQK+ +GDAILMK IL +W DEHC +LLKNCY+A+P +GK+++++    V 
Sbjct:   241 GVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVN 300

Query:   178 PEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEF 237
             PEATP  +    +D+IML    G +ER ++E+  +A  A  GFK +       N + +EF
Sbjct:   301 PEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGA--GFKAIKTTYIYANAFAIEF 358

Query:   238 IK 239
              K
Sbjct:   359 TK 360

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
 Identities = 47/122 (38%), Positives = 72/122 (59%)

Query:   118 GCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI 177
             G    G  MF  +  GDAI MK I  +W DEHC+  LKNCYE++P +GK+I+ +      
Sbjct:   242 GIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPET 301

Query:   178 PEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEF 237
             P+++ +T++   +D IML    G KERT++E+   AL   +GFKG+     VC+ + +  
Sbjct:   302 PDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFE--ALAKASGFKGIKV---VCDAFGVNL 356

Query:   238 IK 239
             I+
Sbjct:   357 IE 358

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 229 (85.7 bits), Expect = 5.6e-38, Sum P(3) = 5.6e-38
 Identities = 53/126 (42%), Positives = 74/126 (58%)

Query:   118 GCGKCGWKMFQKI-LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV 176
             G    G  MF  +   GDAILMK IL +W DEHC  LLKNCY+A+P +GK+++++    V
Sbjct:   248 GVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVEC---V 304

Query:   177 IPEATPAT-REAS--SIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFY 233
             +PE++ AT RE     +D+IML    G KER ++E+  +A  A  GF G        N +
Sbjct:   305 LPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAA--GFTGFKATYIYANAW 362

Query:   234 IMEFIK 239
              +EF K
Sbjct:   363 AIEFTK 368

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.8e-33, Sum P(3) = 3.8e-33
 Identities = 48/122 (39%), Positives = 74/122 (60%)

Query:   118 GCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV-V 176
             G    G  MF +I  G+ ILMK IL +W+DE C+ +LKNC +A+P  G+II+I+      
Sbjct:   242 GVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPRE 301

Query:   177 IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK--GVNYESFVCNFYI 234
             + E   AT+ + S D+ M+   SG KERTK+E+  +A  A  GFK   + Y ++  +++I
Sbjct:   302 VSETDLATKNSLSADLTMMSLTSGGKERTKKEFEDLAKEA--GFKLPKIIYGAY--SYWI 357

Query:   235 ME 236
             +E
Sbjct:   358 IE 359

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.7e-33, Sum P(3) = 9.7e-33
 Identities = 40/115 (34%), Positives = 68/115 (59%)

Query:   126 MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATP-AT 184
             MF ++  GDA+ MK IL +W DE C+ +LKNC++++P  GKIII++  T   P+    ++
Sbjct:   269 MFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLSS 328

Query:   185 REASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239
                 ++D++ML Q SG KER+  ++  +A  +  GF          ++ ++EF K
Sbjct:   329 NTVFAMDLLMLTQCSGGKERSLSQFENLAFAS--GFLRCEIICLAYSYSVIEFHK 381

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query:   126 MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATP-AT 184
             MF ++  GDAI MK IL +W DE C+ +LKNC++++P  GK+II++  T + P+    + 
Sbjct:   269 MFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSC 328

Query:   185 REASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239
                  +D++ML Q SG KER+  ++  +A  +  GF          ++ ++EF K
Sbjct:   329 NTVLGMDLLMLTQCSGGKERSLSQFENLAFAS--GFLLCEIICLSYSYSVIEFHK 381

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 204 (76.9 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
 Identities = 46/116 (39%), Positives = 67/116 (57%)

Query:   126 MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATR 185
             MF  I  GDAI++K IL NW D+ C+ +LKNCY A+P NG +II++      PE T A++
Sbjct:   263 MFDNIPRGDAIILKWILHNWGDKECVKILKNCYTALPVNGTVIILEYILPETPEETLASQ 322

Query:   186 EASSIDIIMLMQLSGE-KERTKQEYYGMALTAKNGFKGVNYESFV-CNFYIMEFIK 239
              A   D+ M++      KERT++E   +A  A  GF G    +++  N +  EF K
Sbjct:   323 LAFDFDLGMMLFFGASGKERTEKELLELAREA--GFSGDYTATYIFANVWAHEFTK 376

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 182 (69.1 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
 Identities = 39/123 (31%), Positives = 66/123 (53%)

Query:   118 GCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI 177
             G    G  MF  +  GDA+++K +  NW DE C+  L NC++A+  NGK+II++      
Sbjct:   253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEE 312

Query:   178 PEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFY-IME 236
             P  +  ++  S++D +M + + G +ERT+++Y    L+  +GF          N   +ME
Sbjct:   313 PNTSEESKLVSTLDNLMFITVGG-RERTEKQYE--KLSKLSGFSKFQVACRAFNSLGVME 369

Query:   237 FIK 239
             F K
Sbjct:   370 FYK 372

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
 Identities = 44/115 (38%), Positives = 65/115 (56%)

Query:   126 MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATP-AT 184
             MF KI  GDAI MK IL +W DE C+++LKNC++++  NGK+II++  T V  ++    +
Sbjct:   266 MFIKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICS 325

Query:   185 REASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK 239
                  +D+ ML Q SG KER   E+  +A  +  GF        V  F ++E  K
Sbjct:   326 NIVFGMDMTMLTQCSGGKERDLYEFENLAYAS--GFSRCAIVCAVYPFSVIEIYK 378

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
 Identities = 41/100 (41%), Positives = 63/100 (63%)

Query:   126 MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATR 185
             MF++I  GDAI MK IL +W DE C+ +LKN ++++P  GK+II++   VV PE  P   
Sbjct:   269 MFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVE---VVTPEE-PKIN 324

Query:   186 EASS-----IDIIMLMQLSGEKERTKQEYYGMALTAKNGF 220
             + SS     +D++ML   SG KER+  ++  +A  + +GF
Sbjct:   325 DISSNIVFGMDMLMLAVSSGGKERSLSQFETLA--SDSGF 362

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMT4 SubName- Full=Putative uncharacterized protein; (358 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-42
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	1e-07
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	0.001

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  144 bits (365), Expect = 1e-42
 Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 40/180 (22%)

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG----- 120
           +G+  +E+ G D  FN V N AM +H+ +VM +IL+    F  +  LVDVGGG G     
Sbjct: 59  FGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAA 118

Query: 121 --------KC---------------------GWKMFQKILNGDAILMKLILRNWDDEHCL 151
                   K                      G   F+ +   DAIL+K +L +W DE C+
Sbjct: 119 IVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCV 178

Query: 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPE--ATPATREASSIDIIMLMQLSGEKERTKQEY 209
            +LK CYEA+P  GK+I+++    V+PE        E   +D+ ML+   G KERT++E+
Sbjct: 179 KILKRCYEALPPGGKVIVVEM---VLPEDPDDDLETEVLLLDLNMLVLNGG-KERTEKEW 234

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 2/41 (4%)

Query: 1  MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR 41
          +G+ +I+AK G    LS +E+ +++P+ NP A VMLDR+LR
Sbjct: 9  LGIPDIIAKHG--KPLSPSELASKLPTVNPEAPVMLDRLLR 47

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID 171
            DA+L   IL + +++    + K  ++A+   G+++I+D
Sbjct: 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.41
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.33
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.32
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.3
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.28
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.28
PLN02244	340	tocopherol O-methyltransferase	99.25
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.23
PLN02336	475	phosphoethanolamine N-methyltransferase	99.22
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.22
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.2
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.19
PLN02490	340	MPBQ/MSBQ methyltransferase	99.19
PRK06922	677	hypothetical protein; Provisional	99.18
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.15
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.14
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.13
PRK11207	197	tellurite resistance protein TehB; Provisional	99.1
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.09
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.05
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.02
PRK08317	241	hypothetical protein; Provisional	98.98
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.96
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.96
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.95
PLN02336	475	phosphoethanolamine N-methyltransferase	98.95
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.94
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.93
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.84
PRK12335	287	tellurite resistance protein TehB; Provisional	98.78
TIGR03438	301	probable methyltransferase. This model represents	98.77
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.77
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.76
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.76
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.73
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.73
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.7
PRK06202	232	hypothetical protein; Provisional	98.7
PRK04266	226	fibrillarin; Provisional	98.68
PRK05785	226	hypothetical protein; Provisional	98.66
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.65
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.64
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.64
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.63
KOG4300	252	consensus Predicted methyltransferase [General fun	98.61
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.6
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.59
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.57
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.56
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.55
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.52
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.48
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.47
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.47
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.47
KOG2361	264	consensus Predicted methyltransferase [General fun	98.45
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.45
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.43
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.41
PLN03075	296	nicotianamine synthase; Provisional	98.4
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.38
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.31
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.31
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.28
PTZ00146	293	fibrillarin; Provisional	98.22
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.18
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.17
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.17
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.15
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.08
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.07
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.06
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.02
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.01
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.99
PRK14968	188	putative methyltransferase; Provisional	97.96
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.95
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.94
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.9
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.85
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.84
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.82
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.77
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.77
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.77
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.75
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.75
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.72
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.69
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.63
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.63
KOG2899	288	consensus Predicted methyltransferase [General fun	97.6
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.6
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.6
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.58
TIGR00438	188	rrmJ cell division protein FtsJ.	97.51
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.49
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.48
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.45
PRK14967	223	putative methyltransferase; Provisional	97.41
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.38
PRK07402	196	precorrin-6B methylase; Provisional	97.36
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.34
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.31
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.27
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.26
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.23
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.23
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.23
KOG3010	261	consensus Methyltransferase [General function pred	97.23
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.2
COG4301	321	Uncharacterized conserved protein [Function unknow	97.11
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.07
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.07
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.06
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.04
PRK04457	262	spermidine synthase; Provisional	97.02
KOG1331	293	consensus Predicted methyltransferase [General fun	96.97
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.97
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.96
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.95
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.89
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.89
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.73
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.66
COG4798	238	Predicted methyltransferase [General function pred	96.63
PRK00811	283	spermidine synthase; Provisional	96.62
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.58
KOG1271	227	consensus Methyltransferases [General function pre	96.56
PHA03411	279	putative methyltransferase; Provisional	96.55
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.52
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.48
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.44
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.44
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.39
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.36
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.36
PLN02366	308	spermidine synthase	96.3
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.2
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	96.19
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.19
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.17
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.1
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.01
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.98
COG4123	248	Predicted O-methyltransferase [General function pr	95.95
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.77
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.73
PRK11569	274	transcriptional repressor IclR; Provisional	95.72
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.71
COG1414	246	IclR Transcriptional regulator [Transcription]	95.64
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	95.55
PRK01581	374	speE spermidine synthase; Validated	95.54
PRK03612	521	spermidine synthase; Provisional	95.45
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	95.34
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.33
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	95.25
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	95.15
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.98
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	94.92
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.84
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	94.57
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	94.43
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	94.42
KOG2940	325	consensus Predicted methyltransferase [General fun	94.32
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.66
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	93.64
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	93.4
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	93.24
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	93.12
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	93.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	92.89
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	92.8
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.62
COG2890	280	HemK Methylase of polypeptide chain release factor	92.56
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	92.43
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	92.23
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	92.19
KOG3924	419	consensus Putative protein methyltransferase invol	92.02
COG1959	150	Predicted transcriptional regulator [Transcription	92.01
COG3897	218	Predicted methyltransferase [General function pred	91.85
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	91.82
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	91.8
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	91.62
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	91.58
PLN02476	278	O-methyltransferase	91.51
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	91.42
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	91.09
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	91.09
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	90.89
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	90.89
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	90.28
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	90.15
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	90.04
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	89.85
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	89.6
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	89.53
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	89.29
COG3355	126	Predicted transcriptional regulator [Transcription	89.22
PRK11014	141	transcriptional repressor NsrR; Provisional	89.22
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	89.18
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	89.08
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	88.83
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	88.7
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	88.69
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	88.67
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	88.65
PRK04148	134	hypothetical protein; Provisional	88.35
PLN02823	336	spermine synthase	88.31
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	88.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	88.01
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	87.95
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	87.83
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	87.79
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	87.69
COG4076	252	Predicted RNA methylase [General function predicti	87.44
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	87.4
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	87.36
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	87.21
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	87.1
PRK03902	142	manganese transport transcriptional regulator; Pro	86.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.52
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	86.01
KOG3115	249	consensus Methyltransferase-like protein [General	85.99
PRK06266	178	transcription initiation factor E subunit alpha; V	85.98
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	85.76
PHA03412	241	putative methyltransferase; Provisional	85.71
COG2345	218	Predicted transcriptional regulator [Transcription	85.38
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	85.04
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	84.61
COG3315	297	O-Methyltransferase involved in polyketide biosynt	84.55
PRK11050	152	manganese transport regulator MntR; Provisional	84.48
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	84.21
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	84.09
PF00165	42	HTH_AraC: Bacterial regulatory helix-turn-helix pr	84.02
PF09929	118	DUF2161: Uncharacterized conserved protein (DUF216	83.52
PRK15431	78	ferrous iron transport protein FeoC; Provisional	83.47
COG4742	260	Predicted transcriptional regulator [Transcription	83.36
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	83.34
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	83.32
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	82.53
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	82.29
PRK00536	262	speE spermidine synthase; Provisional	82.02
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	81.64
COG2521	287	Predicted archaeal methyltransferase [General func	81.57
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	81.12
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	81.11
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	80.98
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	80.54
PRK13239	206	alkylmercury lyase; Provisional	80.39
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	80.31

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=3e-39  Score=277.33  Aligned_cols=231  Identities=39%  Similarity=0.646  Sum_probs=200.4

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCC-CCCCChhhHHHHHHHhccC---CC---CCCCeEecChhhHHHH---------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPS-HNPNAAVMLDRVLRRSLSS---AG---DDRRLQRLAPVAKYVL---------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~---~~---~~~~~y~~t~~s~~l~---------   64 (239)
                      |||||+|++++   +  ..|||..+.. .++.+|..++|+||.|++.   ..   ... .|+++|.+++++         
T Consensus        29 L~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~-~Y~~~~~~~~~l~~~~~~S~a  102 (342)
T KOG3178|consen   29 LGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGE-VYSATPVCKYFLKDSGGGSLA  102 (342)
T ss_pred             cChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecce-eeeccchhhhheecCCCCchh
Confidence            79999999954   2  7788887773 3566899999999999997   11   123 899999988776         


Q ss_pred             -------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEE
Q 045543           65 -------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLV  113 (239)
Q Consensus        65 -------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vl  113 (239)
                                                     ++|+.+|+|...++.....|+++|...+....+.+++.|.+|+....+|
T Consensus       103 ~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~av  182 (342)
T KOG3178|consen  103 PLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAV  182 (342)
T ss_pred             HHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEE
Confidence                                           3466778888888888889999999999998889999999999999999


Q ss_pred             EeCCCCCC-----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHH
Q 045543          114 DVGGGCGK-----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCY  158 (239)
Q Consensus       114 DvGGG~G~-----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~  158 (239)
                      |||||.|.                                   +.||+|++.|++|+|+++||||||+|++|++||+||+
T Consensus       183 DvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~  262 (342)
T KOG3178|consen  183 DVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCK  262 (342)
T ss_pred             EcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHH
Confidence            99999999                                   6789999999999999999999999999999999999


Q ss_pred             hhCCCCceEEEEeeecCC-CCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEE
Q 045543          159 EAIPGNGKIIIIDSTTVV-IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEF  237 (239)
Q Consensus       159 ~aL~pgg~lli~d~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~  237 (239)
                      ++|+|||+|+|+|.+.++ .............+|+.|++.+++|++|+.+||  +.++.++||....+.-.+...++||+
T Consensus       263 ~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~--q~l~~~~gF~~~~~~~~~~~~~~Ie~  340 (342)
T KOG3178|consen  263 KSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEF--QALLPEEGFPVCMVALTAYSYSVIEF  340 (342)
T ss_pred             HhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHH--HhcchhhcCceeEEEeccCccchhee
Confidence            999999999999999886 222211234457799999999988999999999  99999999999999988888999999


Q ss_pred             EC
Q 045543          238 IK  239 (239)
Q Consensus       238 ~k  239 (239)
                      +|
T Consensus       341 ~k  342 (342)
T KOG3178|consen  341 HK  342 (342)
T ss_pred             CC
Confidence            87

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=2.1e-36  Score=254.86  Aligned_cols=147  Identities=29%  Similarity=0.521  Sum_probs=128.5

Q ss_pred             cCCCcccccccCchHHHHHHHHHHhcccccH-HHHHhhccCCCCcceEEEeCCCCCC-----------------------
Q 045543           66 YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVM-NRILDYYKGFEKIKQLVDVGGGCGK-----------------------  121 (239)
Q Consensus        66 ~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------  121 (239)
                      +|.++|+++.++|+..+.|+.+|...+...+ +.+...++ |++.++|||||||+|.                       
T Consensus        58 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~  136 (241)
T PF00891_consen   58 FGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVI  136 (241)
T ss_dssp             HSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHH
T ss_pred             cCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhh
Confidence            4677899999999999999999999988877 78888898 9999999999999999                       


Q ss_pred             -----------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCC--ceEEEEeeecCCCCCCChhhhhhh
Q 045543          122 -----------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGN--GKIIIIDSTTVVIPEATPATREAS  188 (239)
Q Consensus       122 -----------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pg--g~lli~d~~~~~~~~~~~~~~~~~  188 (239)
                                 ++||||+++|.+|+|++++|||+|+|++|++||+|++++|+||  |+|+|+|.++++....+.......
T Consensus       137 ~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~  216 (241)
T PF00891_consen  137 EQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDA  216 (241)
T ss_dssp             CCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHH
T ss_pred             hccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHH
Confidence                       8999999999999999999999999999999999999999999  999999999999877642221235


Q ss_pred             hhhHHHhhccCCccccChhhccHHHHHh
Q 045543          189 SIDIIMLMQLSGEKERTKQEYYGMALTA  216 (239)
Q Consensus       189 ~~dl~ml~~~~~g~~rt~~e~~~~~ll~  216 (239)
                      .+|++||+++ +|++||.+||  ++||+
T Consensus       217 ~~dl~ml~~~-~G~~rt~~e~--~~ll~  241 (241)
T PF00891_consen  217 LFDLNMLVLT-GGKERTEEEW--EALLK  241 (241)
T ss_dssp             HHHHHHHHHH-SSS-EEHHHH--HHHHH
T ss_pred             HHHHHHHHhc-CCCCcCHHHH--HHHhC
Confidence            8999999998 7999999999  99985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=1.2e-32  Score=239.66  Aligned_cols=212  Identities=17%  Similarity=0.243  Sum_probs=155.7

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHhcCCC---------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLHYGIG---------   69 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~~g~~---------   69 (239)
                      |||||+|++    +|+|++|||+++|+    +++.++||||+|+++  .+.++++|+||+.++.|+..+.+         
T Consensus        13 Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~   84 (306)
T TIGR02716        13 LDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPV   84 (306)
T ss_pred             cCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcCch
Confidence            799999998    79999999999999    999999999999999  44557899999999776521110         


Q ss_pred             ----------ccccc----c---------cCch---HHHHHHHHHHhcc-cccHHHHHhhccCCCCcceEEEeCCCCCC-
Q 045543           70 ----------DYEHA----G---------LDSR---FNEVLNTAMLSHN-SIVMNRILDYYKGFEKIKQLVDVGGGCGK-  121 (239)
Q Consensus        70 ----------~~~~l----~---------~~~~---~~~~f~~~m~~~~-~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-  121 (239)
                                .|..+    .         ..|+   ....|...|.... ....+.+++.++ +++..+|||||||+|. 
T Consensus        85 ~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~  163 (306)
T TIGR02716        85 AKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDI  163 (306)
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHH
Confidence                      01111    1         1111   1224555554333 334566778888 8999999999999999 


Q ss_pred             ----------------------------------------Ccccccc-ccCCcceeeechhhhcCChhHHHHHHHHHHhh
Q 045543          122 ----------------------------------------CGWKMFQ-KILNGDAILMKLILRNWDDEHCLSLLKNCYEA  160 (239)
Q Consensus       122 ----------------------------------------~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~a  160 (239)
                                                              +.+|+|+ ++|.+|+|++++++|+|+++++.++|++++++
T Consensus       164 ~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~  243 (306)
T TIGR02716       164 SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDA  243 (306)
T ss_pred             HHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHh
Confidence                                                    6789997 66667999999999999999999999999999


Q ss_pred             CCCCceEEEEeeecCCCCCCChhhhhhh-hhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543          161 IPGNGKIIIIDSTTVVIPEATPATREAS-SIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       161 L~pgg~lli~d~~~~~~~~~~~~~~~~~-~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~  226 (239)
                      |+|||+|+|+|.+.++...+. ...... ..++.|....  ..-++.+||  .+||+++||+.+++.
T Consensus       244 L~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~e~--~~ll~~aGf~~v~~~  305 (306)
T TIGR02716       244 MRSGGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV--LGFKEQARY--KEILESLGYKDVTMV  305 (306)
T ss_pred             cCCCCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc--ccCCCHHHH--HHHHHHcCCCeeEec
Confidence            999999999999887654332 111111 1112222111  123457999  999999999988754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00740 methyltransferase, putative

Probab=99.41  E-value=1.6e-13  Score=115.36  Aligned_cols=125  Identities=17%  Similarity=0.188  Sum_probs=85.9

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------------Ccccccc-ccCCcceeeechh
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------------CGWKMFQ-KILNGDAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~-~~p~~D~~~l~~v  141 (239)
                      .+..+|||||||+|.                                            +.+|+.+ +++..|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            456799999999999                                            2334443 3344599999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC-----------------Ccccc
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS-----------------GEKER  204 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~-----------------~g~~r  204 (239)
                      +|++++++...+|++++++|+|||++++.|.+.+++....     .....+.+.....                 --...
T Consensus       132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  206 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN-----HLLIDLHHQFKRANGYSELEISQKRTALENVMRTD  206 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence            9999988889999999999999999999998766543211     0111111110000                 11346


Q ss_pred             ChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543          205 TKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI  238 (239)
Q Consensus       205 t~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~  238 (239)
                      |.+++  .+++++|||+.+++......+.++.++
T Consensus       207 s~~~~--~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       207 SIETH--KARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             CHHHH--HHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            88999  999999999977654433444444444

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.41  E-value=3.5e-12  Score=108.85  Aligned_cols=123  Identities=18%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc--c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG--D  134 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~--D  134 (239)
                      ...+++.++ +.+..+|||||||+|.                                      +.+|+.+ ++|.+  |
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD  119 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD  119 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence            356677776 7888999999999997                                      2356655 56643  9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|+...++|++++++...+|+++++.|+|||++++.|.........  ..   ....  .+... .-...+.++|  .++
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~--~~---~~~~--~~~~~-~~~~~~~~~~--~~~  189 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW--DE---EFKA--YIKKR-KYTLIPIQEY--GDL  189 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc--HH---HHHH--HHHhc-CCCCCCHHHH--HHH
Confidence            9999999988987778899999999999999999999876543211  11   1111  11100 1234588999  999


Q ss_pred             HhhCCCceeeEEEcC
Q 045543          215 TAKNGFKGVNYESFV  229 (239)
Q Consensus       215 l~~aGf~~~~~~~~~  229 (239)
                      |+++||+.++...+.
T Consensus       190 l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        190 IKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHHCCCCeeeEEeCc
Confidence            999999999887653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.33  E-value=1.6e-12  Score=109.03  Aligned_cols=134  Identities=19%  Similarity=0.250  Sum_probs=54.8

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC-c-
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN-G-  133 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~-~-  133 (239)
                      +++... ..+..+|||||||+|.                                          +.+|..+ |+|. . 
T Consensus        39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf  117 (233)
T PF01209_consen   39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF  117 (233)
T ss_dssp             HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred             HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence            344444 5667899999999998                                          4566655 6775 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH----HhhccCC---------
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII----MLMQLSG---------  200 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~----ml~~~~~---------  200 (239)
                      |+++++..||+++|..  +.|+++++.|||||+++|+|...++.+-  ....+..++...    ......+         
T Consensus       118 D~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~--~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~  193 (233)
T PF01209_consen  118 DAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPL--LRALYKFYFKYILPLIGRLLSGDREAYRYLPE  193 (233)
T ss_dssp             EEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHH--HHHHHHH-------------------------
T ss_pred             eEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCch--hhceeeeeeccccccccccccccccccccccc
Confidence            9999999999999864  7899999999999999999998776421  000111111100    0000001         


Q ss_pred             --ccccChhhccHHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          201 --EKERTKQEYYGMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       201 --g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                        -+-.+.+|+  .++|+++||+.++..+.. +-.++..++|
T Consensus       194 Si~~f~~~~~~--~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  194 SIRRFPSPEEL--KELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ------------------------------------------
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccCC
Confidence              012256788  999999999999887765 4456666665

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.32  E-value=1.8e-11  Score=102.11  Aligned_cols=135  Identities=17%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC-
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN-  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~-  132 (239)
                      ..++..++ ..+..+|||+|||+|.                                          +.+|+.+ +++. 
T Consensus        35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            34556666 6777899999999998                                          2244444 4454 


Q ss_pred             c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH----------------Hh
Q 045543          133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII----------------ML  195 (239)
Q Consensus       133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~----------------ml  195 (239)
                      . |+|++...+|++++.  .++|+++.+.|+|||++++.|...+...  .....+...+...                .+
T Consensus       114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  189 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL  189 (231)
T ss_pred             CccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence            3 999999999998876  4899999999999999999886543321  0000000001000                00


Q ss_pred             hccCCccccChhhccHHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          196 MQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       196 ~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                      ... .....+.+++  .++|+++||+.+++.... +..+++.++|
T Consensus       190 ~~~-~~~~~~~~~l--~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       190 QES-TRDFPGMDEL--AEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHH-HHHcCCHHHH--HHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            000 1123477888  999999999999998876 6778888877

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.30  E-value=2.6e-11  Score=103.44  Aligned_cols=104  Identities=20%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH--h-hccCC---
Q 045543          129 KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM--L-MQLSG---  200 (239)
Q Consensus       129 ~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m--l-~~~~~---  200 (239)
                      +++. . |++++..++|+++|.  .++|+++++.|+|||+++|.|...++..-.+  .....++...+  + .....   
T Consensus       140 p~~~~sfD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  215 (261)
T PLN02233        140 PFDDCYFDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT--SMQEWMIDNVVVPVATGYGLAKE  215 (261)
T ss_pred             CCCCCCEeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH--HHHHHHHhhhhhHHHHHhCChHH
Confidence            4454 3 999999999999876  4889999999999999999998755432110  00001111000  0 00000   


Q ss_pred             --------ccccChhhccHHHHHhhCCCceeeEEEcCC-ceeEEEEE
Q 045543          201 --------EKERTKQEYYGMALTAKNGFKGVNYESFVC-NFYIMEFI  238 (239)
Q Consensus       201 --------g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~-~~~vie~~  238 (239)
                              ...++.+|+  .++++++||+.++...... ..++..++
T Consensus       216 y~~l~~s~~~f~s~~el--~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        216 YEYLKSSINEYLTGEEL--EKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             HHHHHHHHHhcCCHHHH--HHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence                    124588999  9999999999998887764 34455443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.28  E-value=3.3e-11  Score=100.68  Aligned_cols=126  Identities=19%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-DAILMKLIL  142 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vl  142 (239)
                      .+..+|||||||+|.                                         +.||..+ |+|. . |+|.++..|
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            367899999999999                                         3566666 7775 3 999999999


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH-Hhhcc----C-Cc-----------cccC
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII-MLMQL----S-GE-----------KERT  205 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~-ml~~~----~-~g-----------~~rt  205 (239)
                      |+.+|.+  +.|+.++|.|+|||+++|.|...++.+...   .....+... .+-.+    . +.           +..+
T Consensus       130 rnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~  204 (238)
T COG2226         130 RNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD  204 (238)
T ss_pred             hcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence            9999875  899999999999999999999877654321   111111111 11111    0 11           2225


Q ss_pred             hhhccHHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          206 KQEYYGMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       206 ~~e~~~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                      .+++  .++++++||+.+...... +-..+..+.|
T Consensus       205 ~~~l--~~~~~~~gf~~i~~~~~~~G~~~l~~g~K  237 (238)
T COG2226         205 QEEL--KQMIEKAGFEEVRYENLTFGIVALHRGYK  237 (238)
T ss_pred             HHHH--HHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence            6777  999999999998865554 3344544443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.28  E-value=2.9e-12  Score=108.38  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------------Ccccccc-ccCCcceeeechh
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------------CGWKMFQ-KILNGDAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~-~~p~~D~~~l~~v  141 (239)
                      .+..+|||||||+|.                                            +.+|+.+ +.+..|++++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            456799999999998                                            2344443 3334599999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH------------HhhccCC-ccccChhh
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII------------MLMQLSG-EKERTKQE  208 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~------------ml~~~~~-g~~rt~~e  208 (239)
                      +|.+++++...++++++++|+|||++++.|.+..++...... ....+.+..            +.-...+ -...|.++
T Consensus       135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~  213 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET  213 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence            999998888899999999999999999999776554322100 000111110            0000000 11237788


Q ss_pred             ccHHHHHhhCCCceeeEE
Q 045543          209 YYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~  226 (239)
                      .  .+||++|||+.+...
T Consensus       214 ~--~~~L~~aGF~~v~~~  229 (247)
T PRK15451        214 H--KARLHKAGFEHSELW  229 (247)
T ss_pred             H--HHHHHHcCchhHHHH
Confidence            8  999999999977653

>PLN02244 tocopherol O-methyltransferase

Probab=99.25  E-value=9.5e-11  Score=103.62  Aligned_cols=117  Identities=18%  Similarity=0.231  Sum_probs=78.9

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc--ceeeechhh
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG--DAILMKLIL  142 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~--D~~~l~~vl  142 (239)
                      ....+|||||||+|.                                         +.+|+.+ +++.+  |+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            566899999999998                                         2346555 55543  999999999


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCC--ChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCC
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEA--TPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF  220 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~--~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf  220 (239)
                      |+++|.  .++|+++++.|+|||+|+|.+.........  .........++-...... --...+.++|  .++++++||
T Consensus       197 ~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~--~~~l~~aGf  271 (340)
T PLN02244        197 EHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDY--VKLAESLGL  271 (340)
T ss_pred             hccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHH--HHHHHHCCC
Confidence            999875  489999999999999999998754322111  000001111111111100 1122478999  999999999


Q ss_pred             ceeeEEEc
Q 045543          221 KGVNYESF  228 (239)
Q Consensus       221 ~~~~~~~~  228 (239)
                      ..+++...
T Consensus       272 ~~v~~~d~  279 (340)
T PLN02244        272 QDIKTEDW  279 (340)
T ss_pred             CeeEeeeC
Confidence            99987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.23  E-value=1.7e-10  Score=96.20  Aligned_cols=135  Identities=17%  Similarity=0.228  Sum_probs=90.0

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------Ccccccc-ccCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-KILN  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~~p~  132 (239)
                      ..++..+. ..+..+|+|||||+|.                                           +.+|+.+ +.+.
T Consensus        41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            34555555 4556899999999998                                           1133333 2232


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh----ccCC------
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM----QLSG------  200 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~----~~~~------  200 (239)
                        .|+|++++++|++++.  ..+|+++.+.|+|||+++++|...++...-   ......+...++.    ...+      
T Consensus       120 ~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEAYS  194 (239)
T ss_pred             CCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence              3999999999999875  588999999999999999998866543210   0000001000000    0001      


Q ss_pred             ------ccccChhhccHHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          201 ------EKERTKQEYYGMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       201 ------g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                            ...++.++|  .++|+++||+.+++.... +...++.++|
T Consensus       195 ~~~~~~~~~~~~~~~--~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        195 YLAESIRAFPDQEEL--AAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHHhCCCHHHH--HHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                  123477889  999999999999998864 6678998886

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.22  E-value=9e-11  Score=108.17  Aligned_cols=117  Identities=20%  Similarity=0.246  Sum_probs=87.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-D  134 (239)
                      ..+++.++ +++..+|||||||+|.                                       ..+|+++ ++|. . |
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  334 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD  334 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence            34666666 6777899999999996                                       3466666 5564 3 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|++..++|+++|.  .++|++++++|+|||+|+|.|.........+   .....     +... +...++.++|  .++
T Consensus       335 ~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~-----~~~~-g~~~~~~~~~--~~~  401 (475)
T PLN02336        335 VIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---EFAEY-----IKQR-GYDLHDVQAY--GQM  401 (475)
T ss_pred             EEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---HHHHH-----HHhc-CCCCCCHHHH--HHH
Confidence            99999999999876  4899999999999999999998765432211   11111     1111 4567789999  999


Q ss_pred             HhhCCCceeeEEE
Q 045543          215 TAKNGFKGVNYES  227 (239)
Q Consensus       215 l~~aGf~~~~~~~  227 (239)
                      ++++||+++.+..
T Consensus       402 l~~aGF~~i~~~d  414 (475)
T PLN02336        402 LKDAGFDDVIAED  414 (475)
T ss_pred             HHHCCCeeeeeec
Confidence            9999999987654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.22  E-value=7e-11  Score=103.66  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC--hhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT--PATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++..+||+..|.  ..+|++++++|+|||++++.+.+.+......  +..++..     |-.   .-..+|.+++  
T Consensus       191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~-----~~~---~~~lps~~~l--  258 (322)
T PRK15068        191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK-----MRN---VYFIPSVPAL--  258 (322)
T ss_pred             CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc-----Ccc---ceeCCCHHHH--
Confidence            999999999998776  4789999999999999988766655443211  0111111     100   0123588999  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      .+||+++||+.+++...
T Consensus       259 ~~~L~~aGF~~i~~~~~  275 (322)
T PRK15068        259 KNWLERAGFKDVRIVDV  275 (322)
T ss_pred             HHHHHHcCCceEEEEeC
Confidence            99999999999988754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.20  E-value=1.7e-10  Score=95.20  Aligned_cols=131  Identities=21%  Similarity=0.266  Sum_probs=88.8

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D  134 (239)
                      .+++.+. ..+..+|+|+|||.|.                                        +.+|+.+ +.+. . |
T Consensus        30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            4455554 5567899999999998                                        1233333 2333 3 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH---HhhccCC-----------
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII---MLMQLSG-----------  200 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~---ml~~~~~-----------  200 (239)
                      ++++..++|+.++.  ..+|+++++.|+|||++++.+...+...  +    ....++..   |+.....           
T Consensus       109 ~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (223)
T TIGR01934       109 AVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--L----LKKFYKFYLKNVLPSIGGLISKNAEAYTY  180 (223)
T ss_pred             EEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--h----hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence            99999999988764  5899999999999999999987654331  1    11111111   1110000           


Q ss_pred             -----ccccChhhccHHHHHhhCCCceeeEEEcCCc-eeEEEEEC
Q 045543          201 -----EKERTKQEYYGMALTAKNGFKGVNYESFVCN-FYIMEFIK  239 (239)
Q Consensus       201 -----g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~-~~vie~~k  239 (239)
                           ....+.++|  ..+|+++||+.+++.+.... ..+++++|
T Consensus       181 ~~~~~~~~~~~~~~--~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       181 LPESIRAFPSQEEL--AAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHHHHhCCCHHHH--HHHHHHcCCccceeeeeecceeeEEEecC
Confidence                 112377889  99999999999999888654 67888775

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.19  E-value=1.2e-10  Score=99.69  Aligned_cols=111  Identities=16%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             CCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC-c-ceeeech
Q 045543          106 FEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN-G-DAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~-~-D~~~l~~  140 (239)
                      +....+|||||||+|.                                          ..+|+.+ +++. . |+++...
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            5677899999999997                                          2355544 4444 3 9999999


Q ss_pred             hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCC
Q 045543          141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF  220 (239)
Q Consensus       141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf  220 (239)
                      ++|.+++.  .++++++++.|+|||++++.+.+..... +.     ....++.++..+ .+...+..+|  .++|+++||
T Consensus       155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~-----~~~~~~~~~~~~-~~~~~~~~e~--~~~l~~aGf  223 (272)
T PRK11873        155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PE-----EIRNDAELYAGC-VAGALQEEEY--LAMLAEAGF  223 (272)
T ss_pred             cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CH-----HHHHhHHHHhcc-ccCCCCHHHH--HHHHHHCCC
Confidence            99988775  4789999999999999999998754421 10     122333444333 4556788999  999999999


Q ss_pred             ceeeEEE
Q 045543          221 KGVNYES  227 (239)
Q Consensus       221 ~~~~~~~  227 (239)
                      ..+++..
T Consensus       224 ~~v~i~~  230 (272)
T PRK11873        224 VDITIQP  230 (272)
T ss_pred             CceEEEe
Confidence            9987643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.19  E-value=2.2e-10  Score=100.75  Aligned_cols=113  Identities=23%  Similarity=0.295  Sum_probs=79.5

Q ss_pred             HHhhccCCC-CcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-cee
Q 045543           99 ILDYYKGFE-KIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAI  136 (239)
Q Consensus        99 ~~~~~~~~~-~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~  136 (239)
                      +++... +. ...+|||||||+|.                                      +.+|+.+ +++. . |+|
T Consensus       104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE
Confidence            344444 43 45799999999998                                      2234433 3443 3 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHh
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTA  216 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~  216 (239)
                      ++.+++|+|+|.+  ++|+++++.|+|||++++.+.+.++.    +..+  ...+..|       ...+.+|+  .++|+
T Consensus       183 Is~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl--~~lL~  245 (340)
T PLN02490        183 VSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEY--IEWFT  245 (340)
T ss_pred             EEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHH--HHHHH
Confidence            9999999999875  78999999999999999987654321    1111  1112221       12578999  99999


Q ss_pred             hCCCceeeEEEcC
Q 045543          217 KNGFKGVNYESFV  229 (239)
Q Consensus       217 ~aGf~~~~~~~~~  229 (239)
                      ++||+.+++..+.
T Consensus       246 ~aGF~~V~i~~i~  258 (340)
T PLN02490        246 KAGFKDVKLKRIG  258 (340)
T ss_pred             HCCCeEEEEEEcC
Confidence            9999999887754

>PRK06922 hypothetical protein; Provisional

Probab=99.18  E-value=7.8e-11  Score=110.17  Aligned_cols=125  Identities=19%  Similarity=0.244  Sum_probs=90.7

Q ss_pred             eEecChhhHHHHhc--------------CCCcccccccCchHHHHHHHHHHhccccc--HHHHHhhccCCCCcceEEEeC
Q 045543           53 LQRLAPVAKYVLHY--------------GIGDYEHAGLDSRFNEVLNTAMLSHNSIV--MNRILDYYKGFEKIKQLVDVG  116 (239)
Q Consensus        53 ~y~~t~~s~~l~~~--------------g~~~~~~l~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vlDvG  116 (239)
                      .|.-++.+..|..+              ...+|+++..+++..++|...|.......  .......++ +.+..+|||||
T Consensus       348 ~~~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIG  426 (677)
T PRK06922        348 SFRFSAVGEALITFCVEAEKIDMMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVG  426 (677)
T ss_pred             EEeecHHHHHHHHHHHhhhhcchHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeC
Confidence            36667777766611              13578888889988888887776543321  222234455 67788999999


Q ss_pred             CCCCC----------------------------------------Ccccccc-c--cCC--cceeeechhhhcC------
Q 045543          117 GGCGK----------------------------------------CGWKMFQ-K--ILN--GDAILMKLILRNW------  145 (239)
Q Consensus       117 GG~G~----------------------------------------~~gD~~~-~--~p~--~D~~~l~~vlH~~------  145 (239)
                      ||+|.                                        +.+|..+ +  ++.  .|+|+++.++|+|      
T Consensus       427 CGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~  506 (677)
T PRK06922        427 AGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEY  506 (677)
T ss_pred             CCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhccc
Confidence            99998                                        1245543 2  343  3999999999986      


Q ss_pred             -----ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC
Q 045543          146 -----DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP  178 (239)
Q Consensus       146 -----~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~  178 (239)
                           ++++..++|++++++|+|||+++|.|.+++++.
T Consensus       507 ~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~  544 (677)
T PRK06922        507 EGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDK  544 (677)
T ss_pred             ccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCch
Confidence                 357889999999999999999999998776543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.15  E-value=3.7e-10  Score=95.90  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=78.5

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------CccccccccCC--cceeeec
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILN--GDAILMK  139 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~--~D~~~l~  139 (239)
                      ...+++.++ .....+|||||||+|.                                  +.+|+.+..+.  .|+|+++
T Consensus        18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~   96 (255)
T PRK14103         18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN   96 (255)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence            457777777 7778999999999999                                  34555332232  3999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh---hhhhH-HHhhccCCccccChhhccHHHHH
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA---SSIDI-IMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~---~~~dl-~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      .++|+.+|.  .++|+++++.|+|||++++......+.+.........   .+... .-.....+....+.+++  .++|
T Consensus        97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~l  172 (255)
T PRK14103         97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY--AELL  172 (255)
T ss_pred             hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH--HHHH
Confidence            999998875  5899999999999999998632110110000000000   01000 00000002234588999  9999


Q ss_pred             hhCCCceee
Q 045543          216 AKNGFKGVN  224 (239)
Q Consensus       216 ~~aGf~~~~  224 (239)
                      +++||++..
T Consensus       173 ~~aGf~v~~  181 (255)
T PRK14103        173 TDAGCKVDA  181 (255)
T ss_pred             HhCCCeEEE
Confidence            999998543

>TIGR00452 methyltransferase, putative

Probab=99.14  E-value=2.9e-10  Score=99.13  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC--hhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT--PATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++..+||++++.  ...|++++++|+|||+|++.+.+.+......  +..++..     |..   --...|.+++  
T Consensus       190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k-----~~n---v~flpS~~~L--  257 (314)
T TIGR00452       190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAK-----MKN---VYFIPSVSAL--  257 (314)
T ss_pred             CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHh-----ccc---cccCCCHHHH--
Confidence            999999999999876  4789999999999999999877665432111  0111111     110   0012478889  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      .+||+++||+.+++...
T Consensus       258 ~~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       258 KNWLEKVGFENFRILDV  274 (314)
T ss_pred             HHHHHHCCCeEEEEEec
Confidence            99999999999987654

Known examples to date are restricted to the proteobacteria.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.13  E-value=7.5e-11  Score=92.27  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=75.0

Q ss_pred             CCCcceEEEeCCCCCC------------Ccccc--------------c---c-ccCC-c-ceeeechhhhcCChhHHHHH
Q 045543          106 FEKIKQLVDVGGGCGK------------CGWKM--------------F---Q-KILN-G-DAILMKLILRNWDDEHCLSL  153 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------~~gD~--------------~---~-~~p~-~-D~~~l~~vlH~~~d~~~~~i  153 (239)
                      .....+|||||||.|.            .+-|+              |   . ..|. . |+|++.++||+.+|  ...+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d--~~~~   97 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD--PEEF   97 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH--HHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhccc--HHHH
Confidence            4667899999999999            11111              1   1 1233 3 99999999999996  4699


Q ss_pred             HHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc-CCccccChhhccHHHHHhhCCCceee
Q 045543          154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL-SGEKERTKQEYYGMALTAKNGFKGVN  224 (239)
Q Consensus       154 L~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~-~~g~~rt~~e~~~~~ll~~aGf~~~~  224 (239)
                      |+++++.|+|||.+++.+....... +   .   ......+.... .....+|.++|  +++++++||++++
T Consensus        98 l~~l~~~LkpgG~l~~~~~~~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~G~~iv~  160 (161)
T PF13489_consen   98 LKELSRLLKPGGYLVISDPNRDDPS-P---R---SFLKWRYDRPYGGHVHFFSPDEL--RQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHHCEEEEEEEEEEEEBTTSHH-H---H---HHHHCCGTCHHTTTTEEBBHHHH--HHHHHHTTEEEEE
T ss_pred             HHHHHHhcCCCCEEEEEEcCCcchh-h---h---HHHhcCCcCccCceeccCCHHHH--HHHHHHCCCEEEE
Confidence            9999999999999999987653210 0   0   11111111100 13456799999  9999999999875

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.10  E-value=9.4e-10  Score=89.97  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=78.8

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-D  134 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D  134 (239)
                      .+.+++.++ ..+..+|||+|||+|.                                       ...|+.+ +++.. |
T Consensus        19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD   97 (197)
T PRK11207         19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD   97 (197)
T ss_pred             hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence            467777777 6666899999999999                                       2245544 33444 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|++..++|.+++++...++++++++|+|||++++++.+.+++...+      .-.          -...+.+|+  .++
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~~~----------~~~~~~~el--~~~  159 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------VGF----------PFAFKEGEL--RRY  159 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------CCC----------CCccCHHHH--HHH
Confidence            99999999999988899999999999999999888776544321100      000          012467778  888


Q ss_pred             HhhCCCceeeE
Q 045543          215 TAKNGFKGVNY  225 (239)
Q Consensus       215 l~~aGf~~~~~  225 (239)
                      ++  ||+++..
T Consensus       160 ~~--~~~~~~~  168 (197)
T PRK11207        160 YE--GWEMVKY  168 (197)
T ss_pred             hC--CCeEEEe
Confidence            87  8887765

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.09  E-value=1.9e-10  Score=94.12  Aligned_cols=104  Identities=22%  Similarity=0.355  Sum_probs=77.7

Q ss_pred             CcceEEEeCCCCCC-----------------------------------Ccccccc-c----cCC--c-ceeeechhhhc
Q 045543          108 KIKQLVDVGGGCGK-----------------------------------CGWKMFQ-K----ILN--G-DAILMKLILRN  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-----------------------------------~~gD~~~-~----~p~--~-D~~~l~~vlH~  144 (239)
                      +..+.||+|+|.|.                                   ..+++|. .    .|+  . |+|++.|++-+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            46899999999999                                   2344543 1    242  3 99999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceee
Q 045543          145 WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVN  224 (239)
Q Consensus       145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~  224 (239)
                      ++|++.+..|++|.++|+|+|.|+|-|.+.....         ..+|-     .+++-.||.+.|  ++++++||+++++
T Consensus       135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~--~~lF~~AGl~~v~  198 (218)
T PF05891_consen  135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHF--RELFKQAGLRLVK  198 (218)
T ss_dssp             S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHH--HHHHHHCT-EEEE
T ss_pred             CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHH--HHHHHHcCCEEEE
Confidence            9999999999999999999999999999876531         12332     246778999999  9999999999998


Q ss_pred             EEE
Q 045543          225 YES  227 (239)
Q Consensus       225 ~~~  227 (239)
                      ...
T Consensus       199 ~~~  201 (218)
T PF05891_consen  199 EEK  201 (218)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.05  E-value=1.1e-09  Score=93.03  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHhccccc---------HHHHHhhccCCCCcceEEEeCCCCCC----------------------------
Q 045543           79 RFNEVLNTAMLSHNSIV---------MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------  121 (239)
Q Consensus        79 ~~~~~f~~~m~~~~~~~---------~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------  121 (239)
                      +.++.|.+.+-......         ...+++.++  ....+|||+|||+|.                            
T Consensus         8 ~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~   85 (255)
T PRK11036          8 DIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA   85 (255)
T ss_pred             hHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            34566776665443322         123444443  445799999999999                            


Q ss_pred             ------------Ccccccc--ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChh-h
Q 045543          122 ------------CGWKMFQ--KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPA-T  184 (239)
Q Consensus       122 ------------~~gD~~~--~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~-~  184 (239)
                                  +.+|+.+  +.+. . |+|++..+||++++..  .+|+++++.|+|||+|+|..+......-.... .
T Consensus        86 ~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~  163 (255)
T PRK11036         86 AEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG  163 (255)
T ss_pred             HHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence                        1223322  2333 3 9999999999998764  88999999999999999875432110000000 0


Q ss_pred             hhhhhhhHHHh-----hccCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          185 REASSIDIIML-----MQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       185 ~~~~~~dl~ml-----~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      .+.. .+-.+.     ... -....+.+++  .++|+++||+++....+.
T Consensus       164 ~~~~-~~~~~~~~~~~~~~-p~~~~~~~~l--~~~l~~aGf~~~~~~gi~  209 (255)
T PRK11036        164 NFDY-VQAGMPKRKKRTLS-PDYPLDPEQV--YQWLEEAGWQIMGKTGVR  209 (255)
T ss_pred             ChHH-HHhcCccccccCCC-CCCCCCHHHH--HHHHHHCCCeEeeeeeEE
Confidence            0000 000000     000 0123567899  999999999998776553

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.02  E-value=3.9e-09  Score=85.94  Aligned_cols=101  Identities=15%  Similarity=0.071  Sum_probs=80.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |++++.|++|--+-+.+..+++.+.+.|+|||.|+++.++.-+..-.+   .-...||-..-...+....|..++.  .+
T Consensus       104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v--~~  178 (204)
T PF06080_consen  104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDV--EA  178 (204)
T ss_pred             ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHH--HH
Confidence            999999999999999999999999999999999999998765543211   1134566655544456778999988  99


Q ss_pred             HHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          214 LTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      +.+++||+.++.+..|.+.-++..+|
T Consensus       179 lA~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  179 LAAAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             HHHHCCCccCcccccCCCCeEEEEeC
Confidence            99999999999999986655555554

The function of this family is unknown.

>PRK08317 hypothetical protein; Provisional

Probab=98.98  E-value=5.9e-09  Score=86.65  Aligned_cols=122  Identities=13%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-  133 (239)
                      .+++.++ +.+..+|||+|||.|.                                         ..+|+.+ +++. . 
T Consensus        10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            3455566 7778899999999999                                         1123332 3333 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC-CCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP-EATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~-~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                      |+|++.+++|++++.  ..++++++++|+|||++++.+....... .+.........+..  +... .....+..++  .
T Consensus        89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~--~  161 (241)
T PRK08317         89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WSDH-FADPWLGRRL--P  161 (241)
T ss_pred             eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HHhc-CCCCcHHHHH--H
Confidence            999999999999876  4789999999999999999885322111 00000011111111  1111 2233456678  9


Q ss_pred             HHHhhCCCceeeEEE
Q 045543          213 ALTAKNGFKGVNYES  227 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~  227 (239)
                      ++|+++||+.+++..
T Consensus       162 ~~l~~aGf~~~~~~~  176 (241)
T PRK08317        162 GLFREAGLTDIEVEP  176 (241)
T ss_pred             HHHHHcCCCceeEEE
Confidence            999999999876643

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.96  E-value=5.7e-09  Score=86.83  Aligned_cols=95  Identities=18%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             Ccccccc-ccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh--hhhhhH----
Q 045543          122 CGWKMFQ-KILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE--ASSIDI----  192 (239)
Q Consensus       122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~--~~~~dl----  192 (239)
                      +.||.-+ |+|..  |.|.+..-+.+|++.+  +.|+.++++||||||+.+.|+---++.   +..++  +.++|.    
T Consensus       164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~Vlpvl  238 (296)
T KOG1540|consen  164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVL  238 (296)
T ss_pred             EeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchh
Confidence            5567755 77753  9999999999999875  899999999999999999997533321   11111  122222    


Q ss_pred             -----------HHhhccCCccccChhhccHHHHHhhCCCceee
Q 045543          193 -----------IMLMQLSGEKERTKQEYYGMALTAKNGFKGVN  224 (239)
Q Consensus       193 -----------~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~  224 (239)
                                 ..|+.. =-+..+.+|+  ..+.++|||..+.
T Consensus       239 G~~iagd~~sYqYLveS-I~rfp~qe~f--~~miedaGF~~~~  278 (296)
T KOG1540|consen  239 GEIIAGDRKSYQYLVES-IRRFPPQEEF--ASMIEDAGFSSVN  278 (296)
T ss_pred             hHhhhhhHhhhhhHHhh-hhcCCCHHHH--HHHHHHcCCcccc
Confidence                       111110 1133477899  9999999999987

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.96  E-value=5.9e-09  Score=85.11  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-ce
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      ...+++.++ .....+|||+|||+|.                                      ...|+.. +++.. |+
T Consensus        19 ~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   97 (195)
T TIGR00477        19 HSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF   97 (195)
T ss_pred             hHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence            356667766 5556899999999999                                      1123322 23334 99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      |++..++|++++++...++++++++|+|||+++|++....+....+        ..        .....+.+|+  .+++
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~~--------~~~~~~~~el--~~~f  159 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--------MP--------FSFTFKEDEL--RQYY  159 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--------CC--------cCccCCHHHH--HHHh
Confidence            9999999999988889999999999999999888776543321100        00        0112467777  7777


Q ss_pred             hhCCCceeeEE
Q 045543          216 AKNGFKGVNYE  226 (239)
Q Consensus       216 ~~aGf~~~~~~  226 (239)
                      +  +|++....
T Consensus       160 ~--~~~~~~~~  168 (195)
T TIGR00477       160 A--DWELLKYN  168 (195)
T ss_pred             C--CCeEEEee
Confidence            6  47776554

Part of a tellurite-reducing operon tehA and tehB

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.95  E-value=4.1e-09  Score=87.52  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|+...++|++++.  ..+|+++++.|+|||++++.+...+......     ...        . .....+..+|  .+
T Consensus        69 D~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~~~--------~-~~~~~s~~~~--~~  130 (224)
T smart00828       69 DLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE-----HEE--------T-TSYLVTREEW--AE  130 (224)
T ss_pred             CEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc-----ccc--------c-ccccCCHHHH--HH
Confidence            999999999999775  5899999999999999999987533211000     000        0 1123578899  99


Q ss_pred             HHhhCCCceeeEEEcC
Q 045543          214 LTAKNGFKGVNYESFV  229 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~  229 (239)
                      +++++||++++...+.
T Consensus       131 ~l~~~Gf~~~~~~~~~  146 (224)
T smart00828      131 LLARNNLRVVEGVDAS  146 (224)
T ss_pred             HHHHCCCeEEEeEECc
Confidence            9999999999887653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.95  E-value=3.4e-09  Score=97.76  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=84.2

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc---ccCC-c
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ---KILN-G  133 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~---~~p~-~  133 (239)
                      ..+.+++.++ ..+..+|||||||+|.                                     +.+|+.+   ++|. .
T Consensus        25 ~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~  103 (475)
T PLN02336         25 ERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS  103 (475)
T ss_pred             hhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence            3456677776 5566799999999998                                     2345532   3453 3


Q ss_pred             -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                       |+|++..++|++++++...+|+++++.|+|||++++.|.+.......      ....        .....|+..+|  .
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~~--------~~~~~~~~~~~--~  167 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRKN--------NPTHYREPRFY--T  167 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cccC--------CCCeecChHHH--H
Confidence             99999999999999988999999999999999999999876543211      0100        12334678899  9


Q ss_pred             HHHhhCCCceee
Q 045543          213 ALTAKNGFKGVN  224 (239)
Q Consensus       213 ~ll~~aGf~~~~  224 (239)
                      +++.++||....
T Consensus       168 ~~f~~~~~~~~~  179 (475)
T PLN02336        168 KVFKECHTRDED  179 (475)
T ss_pred             HHHHHheeccCC
Confidence            999999988763

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.94  E-value=3.7e-09  Score=92.60  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=57.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC----ccccChhhc
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG----EKERTKQEY  209 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~----g~~rt~~e~  209 (239)
                      |+|++..+||+++|..  .+|+.+++.|+|||+++|........   .+.........+.-++ -.+    .+.++.+|+
T Consensus       200 D~Vi~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~l-p~gth~~~~f~tp~eL  273 (322)
T PLN02396        200 DAVLSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWL-PKGTHQWSSFVTPEEL  273 (322)
T ss_pred             CEEEEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcC-CCCCcCccCCCCHHHH
Confidence            9999999999999875  89999999999999999976432110   0000000000000111 112    135689999


Q ss_pred             cHHHHHhhCCCceeeEEE
Q 045543          210 YGMALTAKNGFKGVNYES  227 (239)
Q Consensus       210 ~~~~ll~~aGf~~~~~~~  227 (239)
                        .++|+++||+++++..
T Consensus       274 --~~lL~~aGf~i~~~~G  289 (322)
T PLN02396        274 --SMILQRASVDVKEMAG  289 (322)
T ss_pred             --HHHHHHcCCeEEEEee
Confidence              9999999999998754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.93  E-value=4.6e-09  Score=90.05  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-  133 (239)
                      ...+++..+ .++..+|||||||-|.                                         .-.|+.+ ++.. 
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~f  128 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGKF  128 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S-
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCCC
Confidence            457778887 8999999999999999                                         2235443 4434 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |.|+.-..+.+...++-..+++++.+.|+|||++++......+....   .......+...--.++||...+..++  ..
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~--~~  203 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEI--LR  203 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHH--HH
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHH--HH
Confidence            99999999999998888999999999999999999988776553211   00000012222223579999999999  99


Q ss_pred             HHhhCCCceeeEEEc
Q 045543          214 LTAKNGFKGVNYESF  228 (239)
Q Consensus       214 ll~~aGf~~~~~~~~  228 (239)
                      .++++||++..+...
T Consensus       204 ~~~~~~l~v~~~~~~  218 (273)
T PF02353_consen  204 AAEDAGLEVEDVENL  218 (273)
T ss_dssp             HHHHTT-EEEEEEE-
T ss_pred             HHhcCCEEEEEEEEc
Confidence            999999999887765

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.84  E-value=1.5e-08  Score=86.51  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|+++++||++++++..+++++++++|+|||.|++-
T Consensus       205 D~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      205 DLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             CEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            9999999999999999999999999999999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.78  E-value=5.1e-08  Score=84.28  Aligned_cols=109  Identities=18%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      +.++..++ ..+..+|||||||+|.                                      ..+|+.+ +++.. |+|
T Consensus       110 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I  188 (287)
T PRK12335        110 SEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI  188 (287)
T ss_pred             HHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence            34555555 4445699999999999                                      2233333 23333 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHh
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTA  216 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~  216 (239)
                      ++..+||..++++...+++++++.|+|||+++++...-.+....+        ..        --...+.+|+  .++++
T Consensus       189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~p--------~~~~~~~~el--~~~~~  250 (287)
T PRK12335        189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------MP--------FSFTFKEGEL--KDYYQ  250 (287)
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------CC--------CCcccCHHHH--HHHhC
Confidence            999999999988889999999999999999888765433321110        00        0112467777  88886


Q ss_pred             hCCCceeeEE
Q 045543          217 KNGFKGVNYE  226 (239)
Q Consensus       217 ~aGf~~~~~~  226 (239)
                      .  |++++..
T Consensus       251 ~--~~i~~~~  258 (287)
T PRK12335        251 D--WEIVKYN  258 (287)
T ss_pred             C--CEEEEEe
Confidence            4  8877653

>TIGR03438 probable methyltransferase

Probab=98.77  E-value=3.5e-08  Score=85.88  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=38.7

Q ss_pred             Cccccccc--cCC-----c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          122 CGWKMFQK--ILN-----G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       122 ~~gD~~~~--~p~-----~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +.|||++.  ++.     . .++++...+|+++++++..+|++++++|+|||+++|
T Consensus       120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35788752  332     2 467777899999999999999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.77  E-value=6.3e-09  Score=73.80  Aligned_cols=46  Identities=15%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             Ccccccc-ccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          122 CGWKMFQ-KILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +.+|+.+ ++|..  |+|++.+++|++  ++..++++++++.|||||+++|
T Consensus        47 ~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   47 RQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EESBTTSSSS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeehHHhCccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence            3455555 66643  999999999999  4557999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.76  E-value=4.8e-08  Score=83.41  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=95.3

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~  133 (239)
                      .+.+++.+. +++..+|||||||-|.                                         .-.|+- .+.+ -
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r-d~~e~f  138 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR-DFEEPF  138 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc-cccccc
Confidence            457788888 9999999999999999                                         122222 2333 3


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |-|+.-..++++..+.-...++++++.|+|||+++++....++.+..    ....+.+-   -.++||...|..+.  ..
T Consensus       139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~~---yiFPgG~lPs~~~i--~~  209 (283)
T COG2230         139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFIDK---YIFPGGELPSISEI--LE  209 (283)
T ss_pred             ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHHH---hCCCCCcCCCHHHH--HH
Confidence            99999999999999999999999999999999999998876664321    11122222   23589999999999  99


Q ss_pred             HHhhCCCceeeEEEcC
Q 045543          214 LTAKNGFKGVNYESFV  229 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~  229 (239)
                      ...++||.+.......
T Consensus       210 ~~~~~~~~v~~~~~~~  225 (283)
T COG2230         210 LASEAGFVVLDVESLR  225 (283)
T ss_pred             HHHhcCcEEehHhhhc
Confidence            9999999998776543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.76  E-value=7.6e-09  Score=80.88  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             CcceEEEeCCCCCC------------------------------------------Ccccccc-c--cCC-cceeeechh
Q 045543          108 KIKQLVDVGGGCGK------------------------------------------CGWKMFQ-K--ILN-GDAILMKLI  141 (239)
Q Consensus       108 ~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~--~p~-~D~~~l~~v  141 (239)
                      +..+|||+|||+|.                                          ..+|+++ +  ++. .|+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            45799999999999                                          5577777 3  333 499999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhh--HHHhhccCCccccChhhccHHHHHhhCC
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSID--IIMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~d--l~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      +|++++..  .+|+++.+.|+|+|++++.+....+....    .....+.  ...+.....+.  +.++|  ..+|++||
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~ag  152 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELPE----QLEELMNLYSEVWSMIYIGN--DKEEW--KYILEEAG  152 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHHH----HHHHHHHHHHHHHHHCC-----CCCGH--HHHHHHTT
T ss_pred             hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHHH----HHHHHHHHHHHHhhhhhccc--CHHHH--HHHHHhcC
Confidence            99998874  88999999999999999998873221100    1111111  11111111122  88899  99999998

...

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.76  E-value=6.5e-08  Score=80.17  Aligned_cols=149  Identities=11%  Similarity=0.013  Sum_probs=86.9

Q ss_pred             cccccccCchHHHHHHHHHHhcccccHHHHHhhccC-CCCcceEEEeCCCCCC---------------------------
Q 045543           70 DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKG-FEKIKQLVDVGGGCGK---------------------------  121 (239)
Q Consensus        70 ~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvGGG~G~---------------------------  121 (239)
                      .|+.+..++.....+...|..........+++.++. ..+..++||||||+|.                           
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~   95 (219)
T TIGR02021        16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARN   95 (219)
T ss_pred             HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            455455555555566665543333333444444431 3456899999999999                           


Q ss_pred             -------------CccccccccCC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh
Q 045543          122 -------------CGWKMFQKILN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA  187 (239)
Q Consensus       122 -------------~~gD~~~~~p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~  187 (239)
                                   ..+|+.+ .+. .|++++..++|++++++...+++++++.+++++.+.+    .+..  . .. ...
T Consensus        96 ~~~~~~~~~~i~~~~~d~~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~--~-~~-~~~  166 (219)
T TIGR02021        96 RAQGRDVAGNVEFEVNDLLS-LCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKT--A-WL-AFL  166 (219)
T ss_pred             HHHhcCCCCceEEEECChhh-CCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCc--h-HH-HHH
Confidence                         1122221 233 3999999999999888888999999998876543322    1111  1 00 001


Q ss_pred             hhhhHHHhhc--cCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          188 SSIDIIMLMQ--LSGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       188 ~~~dl~ml~~--~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      ..+.-..-..  ...-..++.+++  .++++++||+++......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       167 KMIGELFPGSSRATSAYLHPMTDL--ERALGELGWKIVREGLVS  208 (219)
T ss_pred             HHHHhhCcCcccccceEEecHHHH--HHHHHHcCceeeeeeccc
Confidence            1111100000  001133588999  999999999999887654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.75  E-value=1.6e-08  Score=74.52  Aligned_cols=50  Identities=14%  Similarity=0.156  Sum_probs=38.7

Q ss_pred             Ccccc-cc-ccCC-cceeeech-hhhcCCh-hHHHHHHHHHHhhCCCCceEEEEe
Q 045543          122 CGWKM-FQ-KILN-GDAILMKL-ILRNWDD-EHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       122 ~~gD~-~~-~~p~-~D~~~l~~-vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +.+|+ +. +.+. .|++++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        57 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   57 VQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            55777 33 3333 49999999 6775543 678899999999999999999865

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.73  E-value=1.1e-07  Score=80.43  Aligned_cols=130  Identities=10%  Similarity=0.085  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcc------cccHHHHHhhccCCCCcceEEEeCCCCCC---------------------------------
Q 045543           81 NEVLNTAMLSHN------SIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------  121 (239)
Q Consensus        81 ~~~f~~~m~~~~------~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------  121 (239)
                      .+.|.++...+.      +..+..+++.++ .....+|||+|||+|.                                 
T Consensus        10 ~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~   88 (251)
T PRK10258         10 AAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH   88 (251)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence            455665554332      223455666666 4567899999999997                                 


Q ss_pred             -Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc
Q 045543          122 -CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ  197 (239)
Q Consensus       122 -~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~  197 (239)
                       +.+|+.+ +++. . |+|+....+|..+|.  ..+|+++++.|+|||++++.......-+     +....+..+..  .
T Consensus        89 ~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~~~--~  159 (251)
T PRK10258         89 YLAGDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAVDE--R  159 (251)
T ss_pred             EEEcCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHhcc--C
Confidence             2345544 4554 3 999999999866654  5899999999999999998765432111     00011100000  0


Q ss_pred             cCCccccChhhccHHHHHhhCCCce
Q 045543          198 LSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       198 ~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                      .....-.+.+++  .+++...|+..
T Consensus       160 ~~~~~~~~~~~l--~~~l~~~~~~~  182 (251)
T PRK10258        160 PHANRFLPPDAI--EQALNGWRYQH  182 (251)
T ss_pred             CccccCCCHHHH--HHHHHhCCcee
Confidence            001234578889  99999888764

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.73  E-value=8.4e-08  Score=81.42  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC------------------------------------CccccccccC-Cc-cee
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQKIL-NG-DAI  136 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~~~p-~~-D~~  136 (239)
                      .+..+++.++ +.+..+|||||||+|.                                    +.+|+.+..+ .. |++
T Consensus        19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            3567778777 7888999999999998                                    2345443223 23 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +++.++|..+|.  .++|++++++|+|||++++.
T Consensus        98 ~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence            999999988765  58999999999999999885

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.70  E-value=6.2e-08  Score=83.10  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC--hhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT--PATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++-.||.|..+.  ...|+.++++|+|||.|++-..+++.+....  +..+++.+-.  .      =-.-|..-.  
T Consensus       184 DtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~n--v------~FiPs~~~L--  251 (315)
T PF08003_consen  184 DTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRN--V------WFIPSVAAL--  251 (315)
T ss_pred             CEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCc--e------EEeCCHHHH--
Confidence            999999999999887  5889999999999999877555655443211  1112221100  0      123377888  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      ..||+++||+.+++..+
T Consensus       252 ~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  252 KNWLERAGFKDVRCVDV  268 (315)
T ss_pred             HHHHHHcCCceEEEecC
Confidence            99999999999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK06202 hypothetical protein; Provisional

Probab=98.70  E-value=1.6e-07  Score=78.51  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-----cCC-----ccc
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-----LSG-----EKE  203 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-----~~~-----g~~  203 (239)
                      |+|+++.+||+++|++...+|+++++.++  |.++|.|...+..       .+...........     ..+     -+-
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~s~~~~  201 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-------AYALFWAGTRLLSRSSFVHTDGLLSVRRS  201 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-------HHHHHHHHHHHhccCceeeccchHHHHhh
Confidence            99999999999999888899999999998  5666666544321       0111111111000     001     134


Q ss_pred             cChhhccHHHHHhhCCCceeeEEEc
Q 045543          204 RTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       204 rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +|.+|+  .+++++ ||++...++.
T Consensus       202 ~~~~el--~~ll~~-Gf~~~~~~~~  223 (232)
T PRK06202        202 YTPAEL--AALAPQ-GWRVERQWPF  223 (232)
T ss_pred             cCHHHH--HHHhhC-CCeEEeccce
Confidence            588999  999999 9998877655

>PRK04266 fibrillarin; Provisional

Probab=98.68  E-value=1.9e-07  Score=78.02  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             ceeeechhhhcCChh-HHHHHHHHHHhhCCCCceEEEE-eeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDE-HCLSLLKNCYEAIPGNGKIIII-DSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~-~~~~iL~~~~~aL~pgg~lli~-d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+++     |+.++. ....+|+++++.|+|||+++|. ..- +              .|...     .. .+..++.  
T Consensus       143 D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~--------------~d~~~-----~~-~~~~~~~--  194 (226)
T PRK04266        143 DVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-S--------------IDVTK-----DP-KEIFKEE--  194 (226)
T ss_pred             CEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-c--------------ccCcC-----CH-HHHHHHH--
Confidence            6665     555544 3346789999999999999994 321 0              01000     00 1223555  


Q ss_pred             HHHHhhCCCceeeEEEcCC---ceeEEEEEC
Q 045543          212 MALTAKNGFKGVNYESFVC---NFYIMEFIK  239 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~~~---~~~vie~~k  239 (239)
                      .++++++||+.++......   .+..+.+++
T Consensus       195 ~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        195 IRKLEEGGFEILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             HHHHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence            7889999999999887753   366666653

>PRK05785 hypothetical protein; Provisional

Probab=98.66  E-value=1.6e-07  Score=78.53  Aligned_cols=122  Identities=13%  Similarity=0.049  Sum_probs=76.5

Q ss_pred             CcceEEEeCCCCCC--------------------------------Ccccccc-ccCCc--ceeeechhhhcCChhHHHH
Q 045543          108 KIKQLVDVGGGCGK--------------------------------CGWKMFQ-KILNG--DAILMKLILRNWDDEHCLS  152 (239)
Q Consensus       108 ~~~~vlDvGGG~G~--------------------------------~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~  152 (239)
                      ...+|||||||+|.                                +.+|+.+ |++..  |++++...||+++|.+  +
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~--~  128 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE--K  128 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHH--H
Confidence            36799999999998                                2345544 55543  9999999999998764  7


Q ss_pred             HHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH---HhhccCCc--c-----------ccChhhccHHHHHh
Q 045543          153 LLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII---MLMQLSGE--K-----------ERTKQEYYGMALTA  216 (239)
Q Consensus       153 iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~---ml~~~~~g--~-----------~rt~~e~~~~~ll~  216 (239)
                      .|+++++.|+|  .+.|+|...++..-.  ...+..++...   +...+ ++  .           -.+.+++  .++++
T Consensus       129 ~l~e~~RvLkp--~~~ile~~~p~~~~~--~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~--~~~~~  201 (226)
T PRK05785        129 VIAEFTRVSRK--QVGFIAMGKPDNVIK--RKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFH--REIFE  201 (226)
T ss_pred             HHHHHHHHhcC--ceEEEEeCCCCcHHH--HHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHH--HHHHH
Confidence            89999999999  455667654432110  00011111110   10011 12  1           2266888  99999


Q ss_pred             hCCCceeeEEEcC-CceeEEEEEC
Q 045543          217 KNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       217 ~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                      ++| ..++..... +-.++..++|
T Consensus       202 ~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        202 KYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHh-CceEEEEccccEEEEEEEee
Confidence            984 667777765 4456666665

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.65  E-value=3.1e-08  Score=71.54  Aligned_cols=32  Identities=19%  Similarity=0.416  Sum_probs=23.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKI  167 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~l  167 (239)
                      |+|++.++||+++  +...+|+++++.|+|||+|
T Consensus        68 D~V~~~~vl~~l~--~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   68 DLVVASNVLHHLE--DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred             ceehhhhhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence            9999999999994  4569999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.64  E-value=9.2e-08  Score=75.64  Aligned_cols=110  Identities=18%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh--
Q 045543          122 CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM--  196 (239)
Q Consensus       122 ~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~--  196 (239)
                      +.+|..+ +++. . |++++..++|+++|.  .+.|+++++.|+|||+++|.|...++..-..  ..........+..  
T Consensus        31 ~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~  106 (160)
T PLN02232         31 IEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTT--FMQGWMIDNVVVPVA  106 (160)
T ss_pred             EEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHH--HHHHHHccchHhhhh
Confidence            4567755 5554 3 999999999999876  5899999999999999999998754321100  0000000000000  


Q ss_pred             -ccCC-----------ccccChhhccHHHHHhhCCCceeeEEEcCC-ceeEEEE
Q 045543          197 -QLSG-----------EKERTKQEYYGMALTAKNGFKGVNYESFVC-NFYIMEF  237 (239)
Q Consensus       197 -~~~~-----------g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~-~~~vie~  237 (239)
                       ....           ..-.+.+|+  .++|+++||+.++...... -.++..+
T Consensus       107 ~~~~~~~~y~yl~~si~~f~~~~el--~~ll~~aGF~~~~~~~~~~g~~~~~~~  158 (160)
T PLN02232        107 TVYDLAKEYEYLKYSINGYLTGEEL--ETLALEAGFSSACHYEISGGFMGNLVA  158 (160)
T ss_pred             HHhCChHHHHhHHHHHHHCcCHHHH--HHHHHHcCCCcceEEECcchHhHeeEe
Confidence             0000           123478888  9999999999988777653 3344433

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.64  E-value=2.6e-07  Score=76.84  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-----cCCccccChhh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-----LSGEKERTKQE  208 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-----~~~g~~rt~~e  208 (239)
                      |++++..++|+|++++...+++++.+.+++++ ++..   .+..  +.     ...+....-..     .......+..+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~i~~---~~~~--~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~  197 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSL-IFTF---APYT--PL-----LALLHWIGGLFPGPSRTTRIYPHREKG  197 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE-EEEE---CCcc--HH-----HHHHHHhccccCCccCCCCccccCHHH
Confidence            99999999999999999999999998765433 3322   1111  10     01111100000     01123457788


Q ss_pred             ccHHHHHhhCCCceeeEEEcC
Q 045543          209 YYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      |  .++++++||++.++.+..
T Consensus       198 ~--~~~l~~~Gf~~~~~~~~~  216 (230)
T PRK07580        198 I--RRALAAAGFKVVRTERIS  216 (230)
T ss_pred             H--HHHHHHCCCceEeeeecc
Confidence            9  999999999999887764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.63  E-value=1.9e-07  Score=83.92  Aligned_cols=120  Identities=10%  Similarity=0.119  Sum_probs=84.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------C--------ccccccccCCc-ceeee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------C--------GWKMFQKILNG-DAILM  138 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------~--------~gD~~~~~p~~-D~~~l  138 (239)
                      ..+++.++ ..+..+|||||||.|.                             .        .+|+. .++.. |+|+.
T Consensus       157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~-~l~~~fD~Ivs  234 (383)
T PRK11705        157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR-DLNGQFDRIVS  234 (383)
T ss_pred             HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchh-hcCCCCCEEEE
Confidence            35566666 7778899999999999                             1        11221 12333 99999


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN  218 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a  218 (239)
                      ..++|+.++++...+++++++.|+|||++++.+...+......     ..+++-.   .+++|...+.+++  ...++ .
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i--~~~~~-~  303 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQI--AQASE-G  303 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHH--HHHHH-C
Confidence            9999999888778999999999999999999876544332111     1122211   1457877888888  88766 5


Q ss_pred             CCceeeEEEcC
Q 045543          219 GFKGVNYESFV  229 (239)
Q Consensus       219 Gf~~~~~~~~~  229 (239)
                      ||.+..+...+
T Consensus       304 ~~~v~d~~~~~  314 (383)
T PRK11705        304 LFVMEDWHNFG  314 (383)
T ss_pred             CcEEEEEecCh
Confidence            89887776543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.61  E-value=4.8e-07  Score=73.34  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|+..-+|....|  .++.|+++++.|+|||+++.+|.+..+...-  ........+-.--..+ .|...|.+-|   +
T Consensus       147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~~~~~-dGC~ltrd~~---e  218 (252)
T KOG4300|consen  147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLWHLES-DGCVLTRDTG---E  218 (252)
T ss_pred             eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhhheec-cceEEehhHH---H
Confidence            99999999976554  5799999999999999999999987765421  1111222332111223 6877887554   6


Q ss_pred             HHhhCCCceeeEEEcCC
Q 045543          214 LTAKNGFKGVNYESFVC  230 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~~  230 (239)
                      .|+.|-|+..+....+.
T Consensus       219 ~Leda~f~~~~~kr~~~  235 (252)
T KOG4300|consen  219 LLEDAEFSIDSCKRFNF  235 (252)
T ss_pred             HhhhcccccchhhcccC
Confidence            78889999988777653

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.60  E-value=2.3e-07  Score=75.58  Aligned_cols=138  Identities=16%  Similarity=0.227  Sum_probs=87.8

Q ss_pred             cccccccCchHHHHHHHH----HHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------C
Q 045543           70 DYEHAGLDSRFNEVLNTA----MLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------C  122 (239)
Q Consensus        70 ~~~~l~~~~~~~~~f~~~----m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------~  122 (239)
                      -++.+.++|+.-+.|+++    +..+-......+++.+..-++...|.|.|||.+.                       +
T Consensus        30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vt  109 (219)
T PF05148_consen   30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVT  109 (219)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEE
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEE
Confidence            445567788765555444    4444444566777776634455799999999988                       4


Q ss_pred             cccccc-ccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC
Q 045543          123 GWKMFQ-KILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS  199 (239)
Q Consensus       123 ~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~  199 (239)
                      +.|+-. |++.+  |++++.-.|-.   -+....|+.+.+.|+|||.|.|.|...          ++             
T Consensus       110 acdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S----------Rf-------------  163 (219)
T PF05148_consen  110 ACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKS----------RF-------------  163 (219)
T ss_dssp             ES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG----------G--------------
T ss_pred             EecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecc----------cC-------------
Confidence            556643 55543  99998888743   345688999999999999999998631          11             


Q ss_pred             CccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          200 GEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       200 ~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                          -+.+++  .+.+++.||+..........+.+++++|
T Consensus       164 ----~~~~~F--~~~~~~~GF~~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  164 ----ENVKQF--IKALKKLGFKLKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             ----S-HHHH--HHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred             ----cCHHHH--HHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence                144677  8889999999988766667888888875

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.59  E-value=3.5e-07  Score=76.05  Aligned_cols=102  Identities=19%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CcceEEEeCCCCCC-------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCCh
Q 045543          108 KIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDD  147 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d  147 (239)
                      ...+|||||||+|.                                     +.+|+.+ +++. . |+|++.+++|..+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            34789999999996                                     2234433 3343 3 99999999998866


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~  226 (239)
                      .  ..+|+++++.|+|||++++.+......         ......  +... +....+.++|  .+++.++ |+.+...
T Consensus       114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~--~~~~-~~~~~~~~~~--~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       114 L--SQALSELARVLKPGGLLAFSTFGPGTL---------HELRQS--FGQH-GLRYLSLDEL--KALLKNS-FELLTLE  175 (240)
T ss_pred             H--HHHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHH--HHHh-ccCCCCHHHH--HHHHHHh-cCCcEEE
Confidence            5  479999999999999999875432211         011111  0101 3445688889  9999988 8876543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.57  E-value=2.6e-07  Score=77.13  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH-HhhccC-----CccccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII-MLMQLS-----GEKERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~-ml~~~~-----~g~~rt~~  207 (239)
                      |+|++.+++++.++.  ..+|+++.+.|+|||++++....  .  ... ... ....... .+....     ..+..+.+
T Consensus       116 D~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~--~--~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (233)
T PRK05134        116 DVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN--R--NLK-SYL-LAIVGAEYVLRMLPKGTHDYKKFIKPS  187 (233)
T ss_pred             cEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC--C--ChH-HHH-HHHhhHHHHhhhcCcccCchhhcCCHH
Confidence            999999999998775  47899999999999999876532  1  110 000 0000000 000010     12334778


Q ss_pred             hccHHHHHhhCCCceeeEEE
Q 045543          208 EYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~  227 (239)
                      +|  .++++++||++++...
T Consensus       188 ~~--~~~l~~~Gf~~v~~~~  205 (233)
T PRK05134        188 EL--AAWLRQAGLEVQDITG  205 (233)
T ss_pred             HH--HHHHHHCCCeEeeeee
Confidence            89  9999999999987753

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.56  E-value=5.3e-07  Score=72.40  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------CccccccccCC-cceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------CGWKMFQKILN-GDAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------~~gD~~~~~p~-~D~~~l~~vlH~~~d  147 (239)
                      .+..+|+|+|||+|.                                      +.+|+++..+. .|++++...+|..++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED   97 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence            344789999999999                                      34565553333 499999888776654


Q ss_pred             h-------------------HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          148 E-------------------HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       148 ~-------------------~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      +                   ....+|+++.+.|+|||++++++....                             ...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~~  148 (179)
T TIGR00537        98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEPD  148 (179)
T ss_pred             hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChHH
Confidence            2                   145789999999999999999763211                             1356


Q ss_pred             ccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          209 YYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      +  .++|++.||....+....-.+--++++|
T Consensus       149 ~--~~~l~~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       149 T--FDKLDERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             H--HHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence            6  8889999999888877665555555554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.55  E-value=5.2e-08  Score=61.77  Aligned_cols=43  Identities=42%  Similarity=0.729  Sum_probs=35.9

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhc
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSL   44 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   44 (239)
                      |||||+|+++| ++++|++||+.++...++.++..++|+||+|+
T Consensus         9 LgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    9 LGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             TTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            79999999986 58999999999999435557889999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.52  E-value=2.1e-07  Score=75.52  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      +.+++.++ .-+..++||+|||.|.                                      ...|+.+ .++.. |+|
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I   98 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFI   98 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEE
Confidence            46777777 6667899999999999                                      3456655 45554 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +...|+|..+.+...+|++++.++++|||.++|...+
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence            9999999999999999999999999999998886654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.48  E-value=4.8e-07  Score=74.41  Aligned_cols=69  Identities=19%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             CCCcceEEEeCCCCCC------------------------------------CccccccccCC-c-ceeeechhhhcCCh
Q 045543          106 FEKIKQLVDVGGGCGK------------------------------------CGWKMFQKILN-G-DAILMKLILRNWDD  147 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d  147 (239)
                      ..+..+|||||||+|.                                    ..+|++++++. . |+|++..+||++++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            4456789999999999                                    34666665554 3 99999999999998


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      ++..++++++++.+  ++.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            88899999999997  5678888875443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.47  E-value=6.1e-07  Score=72.55  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             HHHH-HHhcccccHHH-HHhhccCCCCcceEEEeCCCCCC----------------------------------------
Q 045543           84 LNTA-MLSHNSIVMNR-ILDYYKGFEKIKQLVDVGGGCGK----------------------------------------  121 (239)
Q Consensus        84 f~~~-m~~~~~~~~~~-~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------  121 (239)
                      |.++ |...+...... ++..++ +.+..+|||||||+|.                                        
T Consensus         6 f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~   84 (187)
T PRK08287          6 FLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID   84 (187)
T ss_pred             hccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeE
Confidence            4443 44444433333 335555 6777899999999999                                        


Q ss_pred             -CccccccccCCc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          122 -CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       122 -~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                       +.+|...+++.. |++++....+++     ..+++.+++.|+|||++++..
T Consensus        85 ~~~~d~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         85 IIPGEAPIELPGKADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             EEecCchhhcCcCCCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEE
Confidence             223433333433 999987765433     468999999999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.47  E-value=4.7e-07  Score=75.11  Aligned_cols=85  Identities=14%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHH-HhhccCCc-----cccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDII-MLMQLSGE-----KERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~-ml~~~~~g-----~~rt~~  207 (239)
                      |+|++-.||+|.+|++  .++++|.+-+||||.+++........      ......+... .+-..+.|     +...++
T Consensus       126 DvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~  197 (243)
T COG2227         126 DVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPA  197 (243)
T ss_pred             cEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHH
Confidence            9999999999999987  59999999999999998876543221      1111111111 11122333     445678


Q ss_pred             hccHHHHHhhCCCceeeEEEc
Q 045543          208 EYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      |.  ..++..+|+.+.....+
T Consensus       198 El--~~~~~~~~~~~~~~~g~  216 (243)
T COG2227         198 EL--IRWLLGANLKIIDRKGL  216 (243)
T ss_pred             HH--HHhcccCCceEEeecce
Confidence            88  99999999998876543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.47  E-value=1.2e-06  Score=71.43  Aligned_cols=138  Identities=14%  Similarity=0.122  Sum_probs=91.5

Q ss_pred             HhcccccHHHHHhhccCCCCcceEEEeCCCCCC------------------------------------CccccccccCC
Q 045543           89 LSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQKILN  132 (239)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~~~p~  132 (239)
                      ...++ .+..++..++ .....+|+|+|||+|.                                    ..+|.-+-.|+
T Consensus        13 ~eRtR-Pa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~   90 (257)
T COG4106          13 DERTR-PARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE   90 (257)
T ss_pred             HhccC-cHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC
Confidence            33344 4678889998 8999999999999999                                    44565553453


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhh------HHHhhcc---CCc
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSID------IIMLMQL---SGE  201 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~d------l~ml~~~---~~g  201 (239)
                        .|+++...+||=.+|.  ..+|.++...|.|||.|.+.   +|++-..|.   ...+.+      ..+....   ...
T Consensus        91 ~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQ---mPdN~deps---H~~mr~~A~~~p~~~~l~~~~~~r~  162 (257)
T COG4106          91 QPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQ---MPDNLDEPS---HRLMRETADEAPFAQELGGRGLTRA  162 (257)
T ss_pred             Cccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEE---CCCccCchh---HHHHHHHHhcCchhhhhCccccccC
Confidence              4999999999877776  59999999999999998885   344333320   001111      1111000   022


Q ss_pred             cccChhhccHHHHHhhCCCceeeEEE------cCCceeEEEEEC
Q 045543          202 KERTKQEYYGMALTAKNGFKGVNYES------FVCNFYIMEFIK  239 (239)
Q Consensus       202 ~~rt~~e~~~~~ll~~aGf~~~~~~~------~~~~~~vie~~k  239 (239)
                      ..-+...|  -++|...+-+ +.++.      .++...|||-+|
T Consensus       163 ~v~s~a~Y--y~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         163 PLPSPAAY--YELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             CCCCHHHH--HHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence            33478899  9999988744 34433      456778888665

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.45  E-value=4.3e-07  Score=75.19  Aligned_cols=88  Identities=20%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcccc--ChhhccH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKER--TKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~r--t~~e~~~  211 (239)
                      |++.+-.||--.+.+.....++++++.|+|||.|+.-|+-..+-..-  ...-...++-+..+--+|-+.|  +.++.  
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql--RF~~~~~i~~nfYVRgDGT~~YfF~~eeL--  221 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL--RFKKGQCISENFYVRGDGTRAYFFTEEEL--  221 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH--hccCCceeecceEEccCCceeeeccHHHH--
Confidence            99999999999999999999999999999999999999865432110  0000122333333332222223  78888  


Q ss_pred             HHHHhhCCCceeeE
Q 045543          212 MALTAKNGFKGVNY  225 (239)
Q Consensus       212 ~~ll~~aGf~~~~~  225 (239)
                      ++|+.+|||..++.
T Consensus       222 ~~~f~~agf~~~~~  235 (264)
T KOG2361|consen  222 DELFTKAGFEEVQL  235 (264)
T ss_pred             HHHHHhcccchhcc
Confidence            99999999998764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.45  E-value=3.9e-07  Score=73.66  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             hccCCCCcceEEEeCCCCCC-------------------------------------CccccccccCCc--ceeeechhh
Q 045543          102 YYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKILNG--DAILMKLIL  142 (239)
Q Consensus       102 ~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p~~--D~~~l~~vl  142 (239)
                      .++ -....+++++|||.|.                                     +..|+-+..|.+  |+|+++-|+
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVl  116 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVL  116 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-G
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHh
Confidence            456 5677899999999999                                     333443344543  999999999


Q ss_pred             hcCCh-hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          143 RNWDD-EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       143 H~~~d-~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |.+++ ++...+++++.++|+|||.|++...
T Consensus       117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99986 6788999999999999999999765

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.43  E-value=1.8e-06  Score=77.29  Aligned_cols=74  Identities=15%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------------CccccccccCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQKILN  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~~~p~  132 (239)
                      .-+++.++ .....+|||+|||+|.                                            +.+|.++.++.
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            44566666 4444699999999999                                            12344544443


Q ss_pred             --cceeeec---hhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 --GDAILMK---LILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 --~D~~~l~---~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                        .|+|++.   |..|.++++.+.++++.+++.|+|||+++|+-
T Consensus       297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence              3999996   44445677778899999999999999999973

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.41  E-value=2.7e-06  Score=72.49  Aligned_cols=121  Identities=14%  Similarity=0.155  Sum_probs=83.8

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------------Cccccccc--c---CCc-cee
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------------CGWKMFQK--I---LNG-DAI  136 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~~--~---p~~-D~~  136 (239)
                      ....+||||.||+|.                                            ..+|.|+.  +   ... +++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            466899999999999                                            56777762  2   224 999


Q ss_pred             eechhhhcCChhHHH-HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCc-----cccChhhcc
Q 045543          137 LMKLILRNWDDEHCL-SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE-----KERTKQEYY  210 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~-~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g-----~~rt~~e~~  210 (239)
                      +.+.+...|+|.+.+ ..|+.+++++.|||.|+-.-.-..+.     .+..+..     +.+..+|     +.||..|. 
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~-----LtsHr~g~~WvMRrRsq~Em-  282 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARV-----LTSHRDGKAWVMRRRSQAEM-  282 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHH-----HhcccCCCceEEEecCHHHH-
Confidence            999999999997754 57999999999999887654333222     1111111     1111133     67899999 


Q ss_pred             HHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          211 GMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                       .+|+++|||+.++..--. +=++|--|+|
T Consensus       283 -D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  283 -DQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             -HHHHHHcCCchhhheeccCCceEEEeecC
Confidence             999999999976543322 4477766654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.40  E-value=6.2e-07  Score=77.33  Aligned_cols=36  Identities=11%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++. +||+|+.++-.++|+++++.|+|||.+++-
T Consensus       197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            999999 999998777889999999999999988773

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.38  E-value=8.5e-07  Score=73.46  Aligned_cols=84  Identities=11%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh-ccCC-----ccccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM-QLSG-----EKERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~-~~~~-----g~~rt~~  207 (239)
                      |++++.+++|+..+..  .+|+++++.|+|||++++.+...+..   +   ......+-.+.. ..+.     ....+..
T Consensus       114 D~i~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (224)
T TIGR01983       114 DVVTCMEVLEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPS  185 (224)
T ss_pred             cEEEehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHH
Confidence            9999999999998764  78999999999999998865421110   0   000111111111 0011     1234678


Q ss_pred             hccHHHHHhhCCCceeeEEE
Q 045543          208 EYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ++  .++++++||+++++..
T Consensus       186 ~l--~~~l~~~G~~i~~~~~  203 (224)
T TIGR01983       186 EL--TSWLESAGLRVKDVKG  203 (224)
T ss_pred             HH--HHHHHHcCCeeeeeee
Confidence            88  9999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.31  E-value=1e-06  Score=77.05  Aligned_cols=91  Identities=12%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCc------cccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE------KERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g------~~rt~~  207 (239)
                      |+|++..+||+++++....+++++.+ +.++ +++|.  +.+..  .  .  + ..+... --.+++.      ...+.+
T Consensus       214 D~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs--~~p~~--~--~--~-~~l~~~-g~~~~g~~~~~r~y~~s~e  281 (315)
T PLN02585        214 DTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIIS--FAPKT--L--Y--Y-DILKRI-GELFPGPSKATRAYLHAEA  281 (315)
T ss_pred             CEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEE--eCCcc--h--H--H-HHHHHH-HhhcCCCCcCceeeeCCHH
Confidence            99999999999999888888888885 4554 44442  12211  0  0  0 111110 0011121      123789


Q ss_pred             hccHHHHHhhCCCceeeEEEcCCc---eeEEEEE
Q 045543          208 EYYGMALTAKNGFKGVNYESFVCN---FYIMEFI  238 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~~~~~---~~vie~~  238 (239)
                      ++  +++|+++||++.+..-....   ..++|++
T Consensus       282 el--~~lL~~AGf~v~~~~~~~~~~y~~~l~~~~  313 (315)
T PLN02585        282 DV--ERALKKAGWKVARREMTATQFYFSRLLEAV  313 (315)
T ss_pred             HH--HHHHHHCCCEEEEEEEeecceeHHhhhhhc
Confidence            99  99999999998876544322   2455554

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.31  E-value=2.9e-07  Score=66.81  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             ceeeec-hhhhcCChhHHHHHHHHHHhhCCCCc
Q 045543          134 DAILMK-LILRNWDDEHCLSLLKNCYEAIPGNG  165 (239)
Q Consensus       134 D~~~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg  165 (239)
                      |+|+++ .++|++++++..++|+++++.|+|||
T Consensus        69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            999995 55999999999999999999999997

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.28  E-value=1.1e-05  Score=67.60  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=92.7

Q ss_pred             cccccCchHHHHHHHHHH----hcccccHHHHHhhccCCCCcceEEEeCCCCCC---------------------Ccccc
Q 045543           72 EHAGLDSRFNEVLNTAML----SHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------CGWKM  126 (239)
Q Consensus        72 ~~l~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------~~gD~  126 (239)
                      +...++|+.-+.|+.+-.    .+-......+++.+..-+....|.|+|||.+.                     ++.|+
T Consensus       140 ~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm  219 (325)
T KOG3045|consen  140 DLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDM  219 (325)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccc
Confidence            345567776555555443    33333456677766533456889999999988                     56677


Q ss_pred             cc-ccCC--cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccc
Q 045543          127 FQ-KILN--GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE  203 (239)
Q Consensus       127 ~~-~~p~--~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~  203 (239)
                      -. |++.  .|++++.-.|..   .+....++.+++.|+|||.++|.|.-.             ++.|            
T Consensus       220 ~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S-------------Rf~d------------  271 (325)
T KOG3045|consen  220 RNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS-------------RFSD------------  271 (325)
T ss_pred             cCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh-------------hccc------------
Confidence            65 5553  288887766642   334678999999999999999988521             1222            


Q ss_pred             cChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          204 RTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       204 rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                        ..+|  .+-|...||.+....-....+.++|+.|
T Consensus       272 --v~~f--~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  272 --VKGF--VRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             --HHHH--HHHHHHcCCeeeehhhhcceEEEEEEec
Confidence              2236  7788999999887766667788888765

>PTZ00146 fibrillarin; Provisional

Probab=98.22  E-value=1.8e-05  Score=68.11  Aligned_cols=79  Identities=13%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|++...    ..++...++.++++.|+|||+++|.-....-+..++                   -.++= ++=  .+
T Consensus       204 DvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~-------------------pe~~f-~~e--v~  257 (293)
T PTZ00146        204 DVIFADVA----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAK-------------------PEVVF-ASE--VQ  257 (293)
T ss_pred             CEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCC-------------------HHHHH-HHH--HH
Confidence            88876653    123455677799999999999999311111111111                   01110 111  46


Q ss_pred             HHhhCCCceeeEEEcC---CceeEEEEE
Q 045543          214 LTAKNGFKGVNYESFV---CNFYIMEFI  238 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~---~~~~vie~~  238 (239)
                      +|+++||++++...+.   ..+++|.++
T Consensus       258 ~L~~~GF~~~e~v~L~Py~~~h~~v~~~  285 (293)
T PTZ00146        258 KLKKEGLKPKEQLTLEPFERDHAVVIGV  285 (293)
T ss_pred             HHHHcCCceEEEEecCCccCCcEEEEEE
Confidence            6999999999888764   356666654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.18  E-value=1e-05  Score=66.99  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |.++-+.++|+++.+.-...++++.++|+|||+++++-+..+
T Consensus       115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~  156 (213)
T TIGR03840       115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD  156 (213)
T ss_pred             CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence            999999999999998888999999999999999888766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.17  E-value=4.1e-06  Score=70.29  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-hhhh-hHHHhhccCC----ccccCh
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-ASSI-DIIMLMQLSG----EKERTK  206 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-~~~~-dl~ml~~~~~----g~~rt~  206 (239)
                      -|+|+++.|+|+..|..  .+++.+.+.|+|||+++|......-..      ++ ..++ +......-.|    .+-.++
T Consensus       159 fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS------~~~~i~~~E~vl~ivp~Gth~~ekfi~p  230 (282)
T KOG1270|consen  159 FDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILS------FAGTIFLAEIVLRIVPKGTHTWEKFINP  230 (282)
T ss_pred             cceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHH------hhccccHHHHHHHhcCCCCcCHHHcCCH
Confidence            39999999999998774  899999999999999999765432211      11 1111 1111111112    244578


Q ss_pred             hhccHHHHHhhCCCceeeEEE
Q 045543          207 QEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       207 ~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      .|.  .+++..+++.+..+..
T Consensus       231 ~e~--~~~l~~~~~~v~~v~G  249 (282)
T KOG1270|consen  231 EEL--TSILNANGAQVNDVVG  249 (282)
T ss_pred             HHH--HHHHHhcCcchhhhhc
Confidence            888  9999999988876643

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.17  E-value=5.5e-06  Score=73.38  Aligned_cols=74  Identities=18%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCCc-cee
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILNG-DAI  136 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~~-D~~  136 (239)
                      .+++.++ .....+|+|+|||+|.                                        +.+|.++..+.. |+|
T Consensus       187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI  265 (342)
T PRK09489        187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI  265 (342)
T ss_pred             HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence            4455555 3344689999999998                                        334555544444 999


Q ss_pred             eechhhhcC---ChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          137 LMKLILRNW---DDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       137 ~l~~vlH~~---~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ++.--+|+.   +.+....+++++.+.|+|||+++|+-.
T Consensus       266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            999889863   345678999999999999999999654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.15  E-value=8.1e-06  Score=66.38  Aligned_cols=108  Identities=11%  Similarity=0.070  Sum_probs=64.2

Q ss_pred             CcceEEEeCCCCCC---------------------------------Ccccccc---ccCC--cceeeechhhhcCChhH
Q 045543          108 KIKQLVDVGGGCGK---------------------------------CGWKMFQ---KILN--GDAILMKLILRNWDDEH  149 (239)
Q Consensus       108 ~~~~vlDvGGG~G~---------------------------------~~gD~~~---~~p~--~D~~~l~~vlH~~~d~~  149 (239)
                      ...+|||||||+|.                                 +.+|+.+   +++.  .|+|++.+++|+.+|..
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~   92 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPE   92 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHH
Confidence            45699999999998                                 2344433   2333  39999999999998754


Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhh----------hhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASS----------IDIIMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~----------~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                        .+|+++.+.++   ++++. .  +....  +.......          +... +...+..+..+.+++  .++++++|
T Consensus        93 --~~l~e~~r~~~---~~ii~-~--p~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~--~~ll~~~G  159 (194)
T TIGR02081        93 --EILDEMLRVGR---HAIVS-F--PNFGY--WRVRWSILTKGRMPVTGELPYD-WYNTPNIHFCTIADF--EDLCGELN  159 (194)
T ss_pred             --HHHHHHHHhCC---eEEEE-c--CChhH--HHHHHHHHhCCccccCCCCCcc-ccCCCCcccCcHHHH--HHHHHHCC
Confidence              67888877654   44332 1  11000  00000000          0000 000012345689999  99999999


Q ss_pred             CceeeEEEc
Q 045543          220 FKGVNYESF  228 (239)
Q Consensus       220 f~~~~~~~~  228 (239)
                      |++++....
T Consensus       160 f~v~~~~~~  168 (194)
T TIGR02081       160 LRILDRAAF  168 (194)
T ss_pred             CEEEEEEEe
Confidence            999887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.08  E-value=1.6e-05  Score=68.59  Aligned_cols=46  Identities=13%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             ccccc-ccC--Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          124 WKMFQ-KIL--NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       124 gD~~~-~~p--~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +|.++ +.|  .. |+|+++|||.+++++...+++++++++|+|||.|++
T Consensus       211 ~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l  260 (287)
T PRK10611        211 LNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA  260 (287)
T ss_pred             ccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            34455 344  24 999999999999999999999999999999998877

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.07  E-value=9.9e-06  Score=68.17  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=52.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC-----CCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI-----PEATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~-----~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      |+|.+-|+|-...++  ..+|+.++++|+|+|++++.= ++|-.     ..+. ..+....+++       .|  .|.+|
T Consensus       153 DvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~-~~~P~e~l~~-------~g--~~~E~  219 (265)
T PF05219_consen  153 DVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGK-SNRPSELLPV-------KG--ATFEE  219 (265)
T ss_pred             EEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEE-EecccccEEcCCCC-CCCchhhcCC-------CC--CcHHH
Confidence            999999999777666  599999999999999988742 33311     1100 0000111221       23  34333


Q ss_pred             c---cHHHHHhhCCCceeeEEEcC
Q 045543          209 Y---YGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       209 ~---~~~~ll~~aGf~~~~~~~~~  229 (239)
                      .   . .+.|+.+||++.+..+.|
T Consensus       220 ~v~~l-~~v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  220 QVSSL-VNVFEPAGFEVERWTRLP  242 (265)
T ss_pred             HHHHH-HHHHHhcCCEEEEEeccC
Confidence            3   2 378999999999987765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.06  E-value=8e-06  Score=66.70  Aligned_cols=49  Identities=14%  Similarity=0.182  Sum_probs=35.8

Q ss_pred             Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          122 CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       122 ~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+|.++ +.+. . |+|+|+|||-.++++...+++++++++|+|||.|++-
T Consensus       123 ~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  123 RRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             EE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             EecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            4566666 2222 3 9999999999999999999999999999999999884

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.02  E-value=3e-05  Score=63.62  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=76.2

Q ss_pred             ceEEEeCCCCCC-----------------------Ccccccc-ccCC----c-ceeeechhhhcCChhHHH-HHHHHHHh
Q 045543          110 KQLVDVGGGCGK-----------------------CGWKMFQ-KILN----G-DAILMKLILRNWDDEHCL-SLLKNCYE  159 (239)
Q Consensus       110 ~~vlDvGGG~G~-----------------------~~gD~~~-~~p~----~-D~~~l~~vlH~~~d~~~~-~iL~~~~~  159 (239)
                      -++||||+=+..                       ...||++ |+|.    . |+|.+|-||...|+..-+ .+|+++++
T Consensus        53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~  132 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK  132 (219)
T ss_pred             ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence            689999998443                       6679999 8883    2 999999999888866655 89999999


Q ss_pred             hCCCCce-----EEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          160 AIPGNGK-----IIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       160 aL~pgg~-----lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      -|+|+|.     |+|+   +|..                  +.. |.+--+.+.|  .++++..||..++.+...
T Consensus       133 fL~~~g~~~~~~LFlV---lP~~------------------Cv~-NSRy~~~~~l--~~im~~LGf~~~~~~~~~  183 (219)
T PF11968_consen  133 FLKPPGLSLFPSLFLV---LPLP------------------CVT-NSRYMTEERL--REIMESLGFTRVKYKKSK  183 (219)
T ss_pred             HhCCCCccCcceEEEE---eCch------------------Hhh-cccccCHHHH--HHHHHhCCcEEEEEEecC
Confidence            9999999     7774   3321                  012 6677788899  999999999999876553

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.02  E-value=2.3e-05  Score=65.88  Aligned_cols=46  Identities=13%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ..+++++.+.|+|||++++.-.                              ....+++  .++|+++||+.++++.-
T Consensus       197 ~~~i~~~~~~L~~gG~~~~~~~------------------------------~~~~~~~--~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       197 RRIIAQAPRLLKPGGWLLLEIG------------------------------YDQGEAV--RALFEAAGFADVETRKD  242 (251)
T ss_pred             HHHHHHHHHhcccCCEEEEEEC------------------------------ccHHHHH--HHHHHhCCCCceEEEeC
Confidence            4789999999999999877210                              0122456  88899999998877654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.01  E-value=3.2e-05  Score=64.27  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             cccccccC---Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC-CCChhhhhhhhhhHHHhhcc
Q 045543          124 WKMFQKIL---NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP-EATPATREASSIDIIMLMQL  198 (239)
Q Consensus       124 gD~~~~~p---~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~-~~~~~~~~~~~~dl~ml~~~  198 (239)
                      +|+|+..+   .. |+|+-+.++|.++.+.-.+.++++.++|+|||+++++-...++.. .+|+                
T Consensus       104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp----------------  167 (218)
T PRK13255        104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP----------------  167 (218)
T ss_pred             CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC----------------
Confidence            56665222   12 999999999999999999999999999999998666554443221 1110                


Q ss_pred             CCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          199 SGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       199 ~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                         ...|.+|+  ++++.. +|++.....
T Consensus       168 ---~~~~~~el--~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        168 ---FSVSDEEV--EALYAG-CFEIELLER  190 (218)
T ss_pred             ---CCCCHHHH--HHHhcC-CceEEEeee
Confidence               12477787  888853 266655443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.99  E-value=2.4e-05  Score=64.61  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-------------------------------Cccccccc---------cCC-c-ce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQK---------ILN-G-DA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~~---------~p~-~-D~  135 (239)
                      .+.+.|..+.+..+|||||||+|.                               +.+|+.++         .+. . |+
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            444555434667899999999999                               22344431         333 3 99


Q ss_pred             eeechhhhcCChh---------HHHHHHHHHHhhCCCCceEEEEee
Q 045543          136 ILMKLILRNWDDE---------HCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       136 ~~l~~vlH~~~d~---------~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+.....|-..+.         ....+|+.+++.|+|||++++..+
T Consensus       121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9886655433321         125789999999999999999653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.99  E-value=3.5e-05  Score=63.65  Aligned_cols=129  Identities=13%  Similarity=0.154  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhcccccHH----HHHhhccCCCCcceEEEeCCCCCC----------------------------------
Q 045543           80 FNEVLNTAMLSHNSIVMN----RILDYYKGFEKIKQLVDVGGGCGK----------------------------------  121 (239)
Q Consensus        80 ~~~~f~~~m~~~~~~~~~----~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------  121 (239)
                      ++++|.......-....|    +.+...+ ...+++|+|+|||+|.                                  
T Consensus        94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L  172 (287)
T COG4976          94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTL  172 (287)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHH
Confidence            456666555433222223    3344445 5568999999999999                                  


Q ss_pred             ---Ccccccccc-CC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE-eeecCCCCCCChhhhhhhhhhHHHh
Q 045543          122 ---CGWKMFQKI-LN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII-DSTTVVIPEATPATREASSIDIIML  195 (239)
Q Consensus       122 ---~~gD~~~~~-p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~-d~~~~~~~~~~~~~~~~~~~dl~ml  195 (239)
                         -.-+|.+.. ++ .|+|....||-...+=  ..++--+...|+|||.+... |..-.+. .      +       + 
T Consensus       173 ~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~-~------f-------~-  235 (287)
T COG4976         173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDG-G------F-------V-  235 (287)
T ss_pred             HHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCC-C------e-------e-
Confidence               111233312 22 4999999999888764  48899999999999988774 4332221 0      0       0 


Q ss_pred             hccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          196 MQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       196 ~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                       .. -.+.+--.|-+++++++..||+++++.++
T Consensus       236 -l~-ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         236 -LG-PSQRYAHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             -cc-hhhhhccchHHHHHHHHhcCceEEEeecc
Confidence             00 11112112224599999999999988764

>PRK14968 putative methyltransferase; Provisional

Probab=97.96  E-value=0.00012  Score=58.70  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      ...+++++.+.|+|||++++....                        .     ...+++  .++++++||++..+....
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~~~------------------------~-----~~~~~l--~~~~~~~g~~~~~~~~~~  175 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQSS------------------------L-----TGEDEV--LEYLEKLGFEAEVVAEEK  175 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEcc------------------------c-----CCHHHH--HHHHHHCCCeeeeeeecc
Confidence            467899999999999998875310                        0     022456  888999999887765432


Q ss_pred             ---CceeEEEEEC
Q 045543          230 ---CNFYIMEFIK  239 (239)
Q Consensus       230 ---~~~~vie~~k  239 (239)
                         ....+++++|
T Consensus       176 ~~~~~~~~~~~~~  188 (188)
T PRK14968        176 FPFEELIVLELVK  188 (188)
T ss_pred             cCCceEEEEEEeC
Confidence               2234555554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.95  E-value=2.8e-05  Score=62.80  Aligned_cols=112  Identities=12%  Similarity=0.075  Sum_probs=72.8

Q ss_pred             CCcceEEEeCCCCCC---------------------------------Ccccccc---ccCC-c-ceeeechhhhcCChh
Q 045543          107 EKIKQLVDVGGGCGK---------------------------------CGWKMFQ---KILN-G-DAILMKLILRNWDDE  148 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~---------------------------------~~gD~~~---~~p~-~-D~~~l~~vlH~~~d~  148 (239)
                      ++..+|||+|||.|.                                 +.+|.-+   .+|. . |.|+++++|......
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P   91 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP   91 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH
Confidence            456899999999999                                 6677754   4664 4 999999999988766


Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH---------HHhhccCCccccChhhccHHHHHhhCC
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI---------IMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl---------~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      +  ++|+++.+.   |.+.+|.   +|.-.  .+..+....+.=         ..+-.|+|=+.-|..+|  +++.++.|
T Consensus        92 ~--~vL~EmlRV---gr~~IVs---FPNFg--~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF--e~lc~~~~  159 (193)
T PF07021_consen   92 D--EVLEEMLRV---GRRAIVS---FPNFG--HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF--EDLCRELG  159 (193)
T ss_pred             H--HHHHHHHHh---cCeEEEE---ecChH--HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH--HHHHHHCC
Confidence            4  677777655   6666653   12110  000000000000         01122455666799999  99999999


Q ss_pred             CceeeEEEcCC
Q 045543          220 FKGVNYESFVC  230 (239)
Q Consensus       220 f~~~~~~~~~~  230 (239)
                      +++.+...+..
T Consensus       160 i~I~~~~~~~~  170 (193)
T PF07021_consen  160 IRIEERVFLDG  170 (193)
T ss_pred             CEEEEEEEEcC
Confidence            99999877653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.94  E-value=1.2e-05  Score=64.01  Aligned_cols=73  Identities=16%  Similarity=0.281  Sum_probs=53.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccC-Cc-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL-NG-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p-~~-D  134 (239)
                      -+++.++ .....++||+|||+|.                                         +.+|+++.++ .. |
T Consensus        22 lL~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD  100 (170)
T PF05175_consen   22 LLLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD  100 (170)
T ss_dssp             HHHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred             HHHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence            3444444 3466899999999998                                         4568888666 33 9


Q ss_pred             eeeechhhhcCCh---hHHHHHHHHHHhhCCCCceEEEEe
Q 045543          135 AILMKLILRNWDD---EHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       135 ~~~l~~vlH~~~d---~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +|++.==+|.-.+   +-..++++.+.+.|+|||+++++-
T Consensus       101 ~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  101 LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            9999766665543   456899999999999999998743

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.90  E-value=3e-05  Score=57.62  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc---ccCC-c
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ---KILN-G  133 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~---~~p~-~  133 (239)
                      +++.+. .....+++|+|||+|.                                         +.+|...   ..+. .
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            445555 5666799999999999                                         1223221   1122 3


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |++++....+     ....+++++++.|+|||++++.
T Consensus        90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence            8888866443     3458999999999999998874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.85  E-value=0.00014  Score=61.59  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+++.. +.    .+....+++++.+.|+|||++++.+....                             ..+++  .+
T Consensus       181 D~Vvan-i~----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v--~~  224 (250)
T PRK00517        181 DVIVAN-IL----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEV--LE  224 (250)
T ss_pred             CEEEEc-Cc----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHH--HH
Confidence            777653 22    23456889999999999999998643211                             22455  78


Q ss_pred             HHhhCCCceeeEEEcCCceeEEE
Q 045543          214 LTAKNGFKGVNYESFVCNFYIME  236 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~~~~~vie  236 (239)
                      .+++.||++.++.......+++-
T Consensus       225 ~l~~~Gf~~~~~~~~~~W~~~~~  247 (250)
T PRK00517        225 AYEEAGFTLDEVLERGEWVALVG  247 (250)
T ss_pred             HHHHCCCEEEEEEEeCCEEEEEE
Confidence            88999999988877766666543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.84  E-value=2.3e-05  Score=63.28  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=25.1

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .|+|++.. +|++     ..+++.+++.|+|||++++.
T Consensus       110 fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       110 FDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence            39888765 5544     35788899999999999876

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.82  E-value=8.5e-05  Score=63.09  Aligned_cols=80  Identities=20%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             eeeechhhhcCCh-hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          135 AILMKLILRNWDD-EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       135 ~~~l~~vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      .+++..|||..+| ++...|++.++++|.||+.|+|.....+..+.     ......++.-... ..+..||.+|+  .+
T Consensus       153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~-----~~~~~~~~~~~~~-~~~~~Rs~~ei--~~  224 (267)
T PF04672_consen  153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE-----RAEALEAVYAQAG-SPGRPRSREEI--AA  224 (267)
T ss_dssp             EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH-----HHHHHHHHHHHCC-S----B-HHHH--HH
T ss_pred             eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH-----HHHHHHHHHHcCC-CCceecCHHHH--HH
Confidence            7899999999987 88999999999999999999998775433211     1112222222222 25788999999  99


Q ss_pred             HHhhCCCceee
Q 045543          214 LTAKNGFKGVN  224 (239)
Q Consensus       214 ll~~aGf~~~~  224 (239)
                      +|.  ||++++
T Consensus       225 ~f~--g~elve  233 (267)
T PF04672_consen  225 FFD--GLELVE  233 (267)
T ss_dssp             CCT--TSEE-T
T ss_pred             HcC--CCccCC
Confidence            998  888765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.77  E-value=0.00024  Score=60.63  Aligned_cols=57  Identities=12%  Similarity=0.108  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE-c
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES-F  228 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~-~  228 (239)
                      ..++++++.+.|+|||++++ +.  ..                           ...+++  .+++++.||..+++.. .
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~-e~--g~---------------------------~~~~~~--~~~l~~~gf~~v~~~~d~  264 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLL-EI--GY---------------------------DQGEAV--RALLAAAGFADVETRKDL  264 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEE-EE--Cc---------------------------hHHHHH--HHHHHhCCCceeEEecCC
Confidence            36899999999999999887 21  00                           012346  8889999998776643 3


Q ss_pred             CCceeEEEEE
Q 045543          229 VCNFYIMEFI  238 (239)
Q Consensus       229 ~~~~~vie~~  238 (239)
                      .+...++.++
T Consensus       265 ~~~~r~~~~~  274 (275)
T PRK09328        265 AGRDRVVLGR  274 (275)
T ss_pred             CCCceEEEEE
Confidence            3444455454

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.77  E-value=6.4e-05  Score=60.96  Aligned_cols=33  Identities=12%  Similarity=0.316  Sum_probs=26.2

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      .|+|++..+ .     ....+++.+++.|+|||++++.+
T Consensus       113 fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        113 FDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence            399998653 2     23578999999999999999874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.77  E-value=0.00012  Score=62.46  Aligned_cols=48  Identities=17%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             Cccccccc--cCCc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          122 CGWKMFQK--ILNG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       122 ~~gD~~~~--~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ..+|.+++  .+.. |+|+|+|||-.++.+.-.+|+++.+++|+|||.|+|
T Consensus       189 ~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         189 RRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             eecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence            44566663  3344 999999999999999999999999999999999988

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.75  E-value=5.9e-05  Score=62.36  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-Cc
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-NG  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~~  133 (239)
                      ..+++.++ +.+..+|||||||+|.                                          +.+|.++..+ .+
T Consensus        66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            45556666 7788999999999999                                          4456655333 23


Q ss_pred             --ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 --DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 --D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                        |+|++....++.+        +.+.+.|+|||++++.
T Consensus       145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence              9999887765443        4567789999999884

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.75  E-value=5.7e-05  Score=62.06  Aligned_cols=64  Identities=14%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccCC--
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKILN--  132 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p~--  132 (239)
                      .+++.++ ..+..+|||||||+|.                                           +.+|+.+..+.  
T Consensus        63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            3445555 5667899999999997                                           23455543342  


Q ss_pred             c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      . |+|++...+++.+        +++.+.|+|||+|++.
T Consensus       142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence            3 9999998887655        3577889999999874

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.72  E-value=6.7e-05  Score=52.73  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .|++++...+|.+ .+....+++++.+.|+|||.+++.
T Consensus        67 ~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          67 FDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            3999999999876 567789999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.69  E-value=6e-05  Score=61.80  Aligned_cols=38  Identities=13%  Similarity=-0.004  Sum_probs=26.6

Q ss_pred             ceeeechhhhcCC------hhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWD------DEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~------d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |++++....+...      ......+|+++++.|+|||+++|..
T Consensus       113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            8888754432111      1124689999999999999999853

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.63  E-value=7.9e-05  Score=65.68  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             ceeeechhhhcC--ChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNW--DDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|-+...||..  +.+.++.+|++|...|+|||.++..
T Consensus       147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999999999974  6778888999999999999999875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.63  E-value=0.00024  Score=59.02  Aligned_cols=82  Identities=17%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             ccccccccC-C-c--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC--CCCCChhhhhhhhhhHHHhh
Q 045543          123 GWKMFQKIL-N-G--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV--IPEATPATREASSIDIIMLM  196 (239)
Q Consensus       123 ~gD~~~~~p-~-~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~--~~~~~~~~~~~~~~dl~ml~  196 (239)
                      .||||+--+ . +  |+|+=+..|+-.+++.-.+..+++++.|+|||+++++-...+.  ...||               
T Consensus       103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------  167 (218)
T PF05724_consen  103 CGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------  167 (218)
T ss_dssp             ES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS---------------
T ss_pred             EcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC---------------
Confidence            569998222 2 2  9999999999999999999999999999999995444333322  22233               


Q ss_pred             ccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          197 QLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       197 ~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                           -..+.+|+  ++++. .+|++.....
T Consensus       168 -----f~v~~~ev--~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  168 -----FSVTEEEV--RELFG-PGFEIEELEE  190 (218)
T ss_dssp             ---------HHHH--HHHHT-TTEEEEEEEE
T ss_pred             -----CCCCHHHH--HHHhc-CCcEEEEEec
Confidence                 01256777  88888 6777766543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.60  E-value=0.00011  Score=61.14  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=49.1

Q ss_pred             CCcceeeec----hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccCh
Q 045543          131 LNGDAILMK----LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTK  206 (239)
Q Consensus       131 p~~D~~~l~----~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~  206 (239)
                      |+-|++++-    ||=-||.|+-.+++++++++-|.|||.|++ |+    .+-.. ....+....  -+..+.---...+
T Consensus       165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EP----QpWks-Y~kaar~~e--~~~~ny~~i~lkp  236 (288)
T KOG2899|consen  165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EP----QPWKS-YKKAARRSE--KLAANYFKIFLKP  236 (288)
T ss_pred             ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cC----CchHH-HHHHHHHHH--HhhcCccceecCH
Confidence            334777753    333389999999999999999999998765 32    11111 111111111  1111112233467


Q ss_pred             hhccHHHHHhhC--CCceee
Q 045543          207 QEYYGMALTAKN--GFKGVN  224 (239)
Q Consensus       207 ~e~~~~~ll~~a--Gf~~~~  224 (239)
                      +.+  ..|+.+.  ||+.++
T Consensus       237 ~~f--~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  237 EDF--EDWLNQIVVGLESVE  254 (288)
T ss_pred             HHH--Hhhhhhhhhheeeec
Confidence            888  8888877  566544

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.00017  Score=62.14  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~  133 (239)
                      .+-+++.++ .....+|+|+|||.|.                                         +..|.|++... -
T Consensus       147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence            456778888 5555699999999999                                         23344554444 3


Q ss_pred             ceeeechhhhcC---ChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNW---DDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~---~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |.|++.==+|.=   .+.-+.+|++..++.|++||.|.|+-.
T Consensus       226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            899888777743   344456999999999999999999755

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.60  E-value=0.00014  Score=59.78  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------------------Cccc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------------CGWK  125 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------------~~gD  125 (239)
                      ...+++.+. +.+...++|+|+|.|.                                                  ..||
T Consensus        31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            345666676 7788999999999999                                                  5788


Q ss_pred             ccc-cc-----CCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          126 MFQ-KI-----LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       126 ~~~-~~-----p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      |++ +.     .++|+|++.+.+  |+++-..+| ++....||||.+|+....+.+..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRR  164 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT
T ss_pred             ccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCC
Confidence            876 22     346999999986  776655555 77778899999988766665544

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.58  E-value=0.00039  Score=57.99  Aligned_cols=54  Identities=11%  Similarity=-0.014  Sum_probs=44.8

Q ss_pred             Ccccccc-cc-C--C-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          122 CGWKMFQ-KI-L--N-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       122 ~~gD~~~-~~-p--~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      ..+|||+ +. +  . . |+|+=+.+|+.++++.-.+..+++.+.|+|||+++++-.-.+
T Consensus       108 ~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        108 YVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             EEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            4578997 32 1  1 3 999999999999999999999999999999999999865443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.51  E-value=0.00023  Score=57.48  Aligned_cols=73  Identities=14%  Similarity=0.227  Sum_probs=48.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-------------------------------Cccccccc---------cCC-c-ce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQK---------ILN-G-DA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~~---------~p~-~-D~  135 (239)
                      ++.+.+....+..+|||+|||+|.                               +.+|+.++         .+. . |+
T Consensus        22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~  101 (188)
T TIGR00438        22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDV  101 (188)
T ss_pred             HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence            344555546778899999999998                               11244331         233 3 99


Q ss_pred             eeechhhh---cCC------hhHHHHHHHHHHhhCCCCceEEEE
Q 045543          136 ILMKLILR---NWD------DEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       136 ~~l~~vlH---~~~------d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+.....|   .|+      .+....+|+++++.|+|||++++.
T Consensus       102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            98743321   122      123468999999999999999885

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.49  E-value=0.00025  Score=58.60  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC--C
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL--N  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p--~  132 (239)
                      ..+++.++ ..+..+|||||||+|.                                          +.+|..+..+  .
T Consensus        67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            34555566 6778899999999999                                          3345544223  2


Q ss_pred             -cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 -GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 -~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                       -|++++....++        +.+.+.+.|+|||++++.
T Consensus       146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence             398888765433        445678899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.48  E-value=0.00029  Score=56.63  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=48.7

Q ss_pred             HhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc---ccCCcce
Q 045543          100 LDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ---KILNGDA  135 (239)
Q Consensus       100 ~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~---~~p~~D~  135 (239)
                      +..+. +.+..+++|||||+|.                                         +.||.-+   +.|+.|.
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            44555 7788999999999999                                         4444433   3443488


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +++..-      .....||+.+.+.|+|||||++.-
T Consensus       106 iFIGGg------~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         106 IFIGGG------GNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEECCC------CCHHHHHHHHHHHcCcCCeEEEEe
Confidence            888775      234589999999999999998753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.45  E-value=0.00035  Score=57.48  Aligned_cols=64  Identities=14%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccCC---cce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILN---GDA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~---~D~  135 (239)
                      .+++.++ ..+..+|||||||+|.                                       +.+|+++..+.   .|+
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence            3444555 6677899999999997                                       33555554442   399


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +++...+++.        .+.+.+.|+|||++++.
T Consensus       148 I~~~~~~~~~--------~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        148 ILVTAAAPEI--------PRALLEQLKEGGILVAP  174 (212)
T ss_pred             EEEccCchhh--------hHHHHHhcCCCcEEEEE
Confidence            9988766544        45678899999999885

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.45  E-value=0.0002  Score=61.32  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=38.5

Q ss_pred             CcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-ceeeechhhhcC
Q 045543          108 KIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNW  145 (239)
Q Consensus       108 ~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~  145 (239)
                      ...+|||+|||+|.                                       ..+|..+ +++. . |+|+....    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            45789999999997                                       2234333 4444 2 88875432    


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                           ...+++++++|+|||+++++.
T Consensus       161 -----~~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        161 -----PCKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             -----CCCHHHHHhhccCCCEEEEEe
Confidence                 134688999999999999864

>PRK14967 putative methyltransferase; Provisional

Probab=97.41  E-value=0.00034  Score=58.11  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             CCCcceEEEeCCCCCC---------------------------------------CccccccccCC-c-ceeeechhhhc
Q 045543          106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILN-G-DAILMKLILRN  144 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~  144 (239)
                      ..+..+|||+|||+|.                                       +.+|+++.++. . |+|++.--.+.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  113 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP  113 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence            4556799999999998                                       34566554443 3 99887521111


Q ss_pred             --------------CC-----hhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          145 --------------WD-----DEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       145 --------------~~-----d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                                    |.     ......+++++.+.|+|||+++++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                          11     11245789999999999999998644

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.38  E-value=0.00036  Score=60.37  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |++++....     +....+++++++.|+|||++++...
T Consensus       227 DlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       227 DVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             eEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            998875432     2346899999999999999988764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.36  E-value=0.00053  Score=55.75  Aligned_cols=24  Identities=13%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhhCCCCceEEEEee
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ....+++++++.|+|||++++...
T Consensus       120 ~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        120 PIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEee
Confidence            457899999999999999988764

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.34  E-value=0.00039  Score=60.19  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=32.5

Q ss_pred             cceeeechhhhc-C-ChhHHHHHHHHHHhhCCCCceEEE
Q 045543          133 GDAILMKLILRN-W-DDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       133 ~D~~~l~~vlH~-~-~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      -|++-+..++|. | +.+.++..|+|+++.|+|||.++=
T Consensus       197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            599999999996 4 577899999999999999997754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.31  E-value=0.00054  Score=61.46  Aligned_cols=71  Identities=17%  Similarity=0.443  Sum_probs=46.9

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccc---ccccCCc
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKM---FQKILNG  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~---~~~~p~~  133 (239)
                      .+++.+. -.....+||||||+|.                                         +.+|.   ++.+|.+
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            4454554 3445799999999999                                         34454   2345543


Q ss_pred             --ceeeechhhhcCChhH-----HHHHHHHHHhhCCCCceEEEE
Q 045543          134 --DAILMKLILRNWDDEH-----CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 --D~~~l~~vlH~~~d~~-----~~~iL~~~~~aL~pgg~lli~  170 (239)
                        |.|++..-. .|+...     ...+|+.+++.|+|||.+.+.
T Consensus       192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence              777764221 243222     257899999999999999885

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.30  E-value=0.00078  Score=59.38  Aligned_cols=73  Identities=14%  Similarity=0.104  Sum_probs=49.3

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-D  134 (239)
                      ..++.... +.+..+|+|+|||+|.                                       ..+|+.+ +.+. . |
T Consensus       172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D  250 (329)
T TIGR01177       172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD  250 (329)
T ss_pred             HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence            34444445 7777899999999999                                       2456654 3433 3 8


Q ss_pred             eeeech------hh-hcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          135 AILMKL------IL-RNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       135 ~~~l~~------vl-H~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ++++.-      .. ++...+....+|+.+++.|+|||++++.
T Consensus       251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            888731      11 1112233578999999999999999885

This family is found exclusively in the Archaea.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.27  E-value=0.00069  Score=59.43  Aligned_cols=42  Identities=12%  Similarity=0.252  Sum_probs=36.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHh-hCCCCceEEE-EeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYE-AIPGNGKIII-IDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~-aL~pgg~lli-~d~~~~  175 (239)
                      -++++.+.+.|++++++..+|+++++ .|+||+.++| +|.+-+
T Consensus       159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~  202 (319)
T TIGR03439       159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD  202 (319)
T ss_pred             EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            56777789999999999999999999 9999999988 566543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.27  E-value=0.00033  Score=56.99  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhCCCCceEEEEe
Q 045543          151 LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ..+++.+++.|+|||+|++..
T Consensus       112 ~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091       112 PHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             HHHHHHHHHHhCCCCEEEEEe
Confidence            468999999999999998753

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.26  E-value=0.0014  Score=56.83  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             HHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------Cccccc--
Q 045543           84 LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMF--  127 (239)
Q Consensus        84 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~--  127 (239)
                      |-.+-+..++... .+++.+.  .+..+|+|||||+|.                                  +...+.  
T Consensus       140 FGTG~H~TT~lcl-~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~  216 (295)
T PF06325_consen  140 FGTGHHPTTRLCL-ELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS  216 (295)
T ss_dssp             S-SSHCHHHHHHH-HHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred             ccCCCCHHHHHHH-HHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence            4444444444433 3344554  344799999999999                                  222221  


Q ss_pred             --cccCC--cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccc
Q 045543          128 --QKILN--GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE  203 (239)
Q Consensus       128 --~~~p~--~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~  203 (239)
                        .+.++  .|+|+ .|++    .+-...+...+.+.|+|||++++.-.+..+                           
T Consensus       217 ~~~~~~~~~~dlvv-ANI~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~---------------------------  264 (295)
T PF06325_consen  217 LSEDLVEGKFDLVV-ANIL----ADVLLELAPDIASLLKPGGYLILSGILEEQ---------------------------  264 (295)
T ss_dssp             CTSCTCCS-EEEEE-EES-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG---------------------------
T ss_pred             EecccccccCCEEE-ECCC----HHHHHHHHHHHHHhhCCCCEEEEccccHHH---------------------------
Confidence              13333  38876 4443    344578889999999999999886554321                           


Q ss_pred             cChhhccHHHHHhhCCCceeeEEEcCCceeEE
Q 045543          204 RTKQEYYGMALTAKNGFKGVNYESFVCNFYIM  235 (239)
Q Consensus       204 rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vi  235 (239)
                        .++.  .+.+++ ||++.+........+++
T Consensus       265 --~~~v--~~a~~~-g~~~~~~~~~~~W~~l~  291 (295)
T PF06325_consen  265 --EDEV--IEAYKQ-GFELVEEREEGEWVALV  291 (295)
T ss_dssp             --HHHH--HHHHHT-TEEEEEEEEETTEEEEE
T ss_pred             --HHHH--HHHHHC-CCEEEEEEEECCEEEEE
Confidence              1233  555666 88888877766555544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.00046  Score=60.42  Aligned_cols=77  Identities=14%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc---ccCC
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ---KILN  132 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~---~~p~  132 (239)
                      .+....|+|+. ++|||||-|+|.                                          ..+|+-.   ++|.
T Consensus       104 ~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~  182 (484)
T COG5459         104 ELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA  182 (484)
T ss_pred             HHHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence            33334454544 569999999999                                          3445543   5666


Q ss_pred             cceeeechhhhcCChhH----HHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          133 GDAILMKLILRNWDDEH----CLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~----~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      +|.|.+..++|..-.+.    ....++++-..+.|||.|+|+|.-.+
T Consensus       183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            68888888877654333    33489999999999999999986443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.23  E-value=0.00056  Score=59.08  Aligned_cols=20  Identities=15%  Similarity=0.400  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhhCCCCceEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli  169 (239)
                      ...+++++.+.|+|||++++
T Consensus       230 ~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       230 VRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            47899999999999998865

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.23  E-value=0.00049  Score=60.13  Aligned_cols=21  Identities=10%  Similarity=0.305  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhhCCCCceEEE
Q 045543          149 HCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ....|++++.+.|+|||++++
T Consensus       241 ~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        241 LVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             HHHHHHHHHHHhcCCCCEEEE
Confidence            347899999999999998876

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.23  E-value=0.00065  Score=56.61  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCc-eEEEEee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNG-KIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg-~lli~d~  172 (239)
                      |+|+....+|-++-+   ++.+.+++.|++.| .+.|.-+
T Consensus       102 DlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  102 DLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             eeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence            999999999977654   88999999999866 5555443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.20  E-value=0.00096  Score=54.37  Aligned_cols=63  Identities=21%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             hhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccC---C-c
Q 045543          101 DYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKIL---N-G  133 (239)
Q Consensus       101 ~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p---~-~  133 (239)
                      ..++ .....+++|+|||+|.                                           +.+|+.+..+   . .
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            4455 6777899999999997                                           2233332111   2 3


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |++++..     ...+...+|+.+.+.|+|||++++
T Consensus       113 D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        113 DRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence            8887743     233456899999999999999976

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0014  Score=54.97  Aligned_cols=54  Identities=13%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             Ccccccc---ccCC-c--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE-EeeecC
Q 045543          122 CGWKMFQ---KILN-G--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII-IDSTTV  175 (239)
Q Consensus       122 ~~gD~~~---~~p~-~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli-~d~~~~  175 (239)
                      +.||+-.   .+|. +  =.+++...|-|+++++|..+|.+++.+|+||-.+++ +|.+-+
T Consensus       138 l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         138 LCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             hhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence            6677743   3454 3  577889999999999999999999999999988887 665443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.07  E-value=0.00032  Score=64.10  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------Ccccccc---ccCC-c-ceeeechhhhcCC
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------CGWKMFQ---KILN-G-DAILMKLILRNWD  146 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------~~gD~~~---~~p~-~-D~~~l~~vlH~~~  146 (239)
                      ...+++||||||.|+                                   +-+-+-+   |+|. + |++-+++++..|.
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~  195 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH  195 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence            456999999999999                                   1112211   6775 4 9999999999998


Q ss_pred             hhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          147 DEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       147 d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      +.+ -.+|-.+-+.|+|||.++..-.-.
T Consensus       196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  196 PND-GFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hcc-cceeehhhhhhccCceEEecCCcc
Confidence            776 468999999999999988865533

; GO: 0008168 methyltransferase activity

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.07  E-value=0.0013  Score=59.99  Aligned_cols=79  Identities=11%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-cc--
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KI--  130 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~--  130 (239)
                      +..++..++ ..+..+|+|+|||+|.                                          +.+|... +.  
T Consensus       227 s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~  305 (426)
T TIGR00563       227 AQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA  305 (426)
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence            334455566 6667899999999997                                          2234332 11  


Q ss_pred             C-C-cceeee------chhhhcCCh-------hH-------HHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          131 L-N-GDAILM------KLILRNWDD-------EH-------CLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       131 p-~-~D~~~l------~~vlH~~~d-------~~-------~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      + . .|.|++      ..+++..++       ++       ..+||+++++.|+|||+|++....+.
T Consensus       306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            2 2 398885      346665444       11       36899999999999999999887554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.06  E-value=0.00052  Score=58.26  Aligned_cols=76  Identities=14%  Similarity=0.136  Sum_probs=54.5

Q ss_pred             CC-cceeeechhhhcC--ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcc-----
Q 045543          131 LN-GDAILMKLILRNW--DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEK-----  202 (239)
Q Consensus       131 p~-~D~~~l~~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~-----  202 (239)
                      |+ .|+++...+|.--  +-++=.+.++|+.+.|||||.|++....- ..       .+  .        . |++     
T Consensus       156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~-~t-------~Y--~--------v-G~~~F~~l  216 (256)
T PF01234_consen  156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG-ST-------YY--M--------V-GGHKFPCL  216 (256)
T ss_dssp             -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS--S-------EE--E--------E-TTEEEE--
T ss_pred             ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC-ce-------eE--E--------E-CCEecccc
Confidence            44 6999999999864  45667899999999999999999987642 21       00  0        1 222     


Q ss_pred             ccChhhccHHHHHhhCCCceeeEEE
Q 045543          203 ERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       203 ~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ..+.+..  ++-|+++||.+.+...
T Consensus       217 ~l~ee~v--~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  217 PLNEEFV--REALEEAGFDIEDLEK  239 (256)
T ss_dssp             -B-HHHH--HHHHHHTTEEEEEEEG
T ss_pred             cCCHHHH--HHHHHHcCCEEEeccc
Confidence            2366666  9999999999988774

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0047  Score=53.51  Aligned_cols=98  Identities=21%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------Cc----ccccc--ccCC---cc
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------CG----WKMFQ--KILN---GD  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~----gD~~~--~~p~---~D  134 (239)
                      .+++.+.  .+.++++|||||+|.                                  +.    --.|.  .++.   .|
T Consensus       154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D  231 (300)
T COG2264         154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD  231 (300)
T ss_pred             HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence            4555665  477999999999999                                  11    01111  2332   27


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|+. |||    .+-.+++...+.+.++|||+++..-.+ .+                            -.+..  .+-
T Consensus       232 vIVA-NIL----A~vl~~La~~~~~~lkpgg~lIlSGIl-~~----------------------------q~~~V--~~a  275 (300)
T COG2264         232 VIVA-NIL----AEVLVELAPDIKRLLKPGGRLILSGIL-ED----------------------------QAESV--AEA  275 (300)
T ss_pred             EEEe-hhh----HHHHHHHHHHHHHHcCCCceEEEEeeh-Hh----------------------------HHHHH--HHH
Confidence            7754 454    233568999999999999999876532 11                            11233  666


Q ss_pred             HhhCCCceeeEEEcCCcee
Q 045543          215 TAKNGFKGVNYESFVCNFY  233 (239)
Q Consensus       215 l~~aGf~~~~~~~~~~~~~  233 (239)
                      ++++||.++++.......+
T Consensus       276 ~~~~gf~v~~~~~~~eW~~  294 (300)
T COG2264         276 YEQAGFEVVEVLEREEWVA  294 (300)
T ss_pred             HHhCCCeEeEEEecCCEEE
Confidence            7888999888776654444

>PRK04457 spermidine synthase; Provisional

Probab=97.02  E-value=0.00086  Score=57.28  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             CchHHH-HHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------
Q 045543           77 DSRFNE-VLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------  121 (239)
Q Consensus        77 ~~~~~~-~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------  121 (239)
                      +|.... .|.++|.....         +  .++.++|||||||.|.                                  
T Consensus        45 ~P~~l~~~y~~~m~~~l~---------~--~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~  113 (262)
T PRK04457         45 DPSELELAYTRAMMGFLL---------F--NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP  113 (262)
T ss_pred             CcccccCHHHHHHHHHHh---------c--CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC
Confidence            455443 57777752111         0  2456799999999999                                  


Q ss_pred             --------Ccccccc---ccCCc-ceeeechhhhc--CChh-HHHHHHHHHHhhCCCCceEEEE
Q 045543          122 --------CGWKMFQ---KILNG-DAILMKLILRN--WDDE-HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       122 --------~~gD~~~---~~p~~-D~~~l~~vlH~--~~d~-~~~~iL~~~~~aL~pgg~lli~  170 (239)
                              +.+|..+   ..+.. |+|++-. .+.  .+.. ....++++|++.|+|||+++|.
T Consensus       114 ~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        114 ENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence                    2345433   23334 9998742 221  1211 1369999999999999999885

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.97  E-value=0.0024  Score=54.45  Aligned_cols=90  Identities=14%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             HHHHHHHhccccc---HHHHHhhccCCCCcceEEEeCCCCCC-------------------------Ccc------cccc
Q 045543           83 VLNTAMLSHNSIV---MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------CGW------KMFQ  128 (239)
Q Consensus        83 ~f~~~m~~~~~~~---~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------~~g------D~~~  128 (239)
                      .|...|..++...   -+.+....+..+....++|+|||.|.                         ..+      |...
T Consensus        17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~   96 (293)
T KOG1331|consen   17 IYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALK   96 (293)
T ss_pred             HHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhc
Confidence            4556665544332   23344444433446889999999998                         222      3333


Q ss_pred             -ccCC-c-ceeeechhhhcCC-hhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          129 -KILN-G-DAILMKLILRNWD-DEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       129 -~~p~-~-D~~~l~~vlH~~~-d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                       +.++ . |..+-..|+|+|+ ...-.++++.+.+.++|||..+|.=.
T Consensus        97 ~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen   97 LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence             3443 3 9999999999997 44456899999999999999887543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.97  E-value=0.0022  Score=55.15  Aligned_cols=43  Identities=9%  Similarity=0.272  Sum_probs=35.6

Q ss_pred             CcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          132 NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       132 ~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      ..|+|+++++|-..+++.-..+++++.+.+.+  .|+|+|.-.+.
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence            34999999999999988788899999888776  88888875443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.96  E-value=0.0014  Score=56.56  Aligned_cols=48  Identities=13%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             CccccccccCC-c-ceeeec-------------hhhhcCCh----------hHHHHHHHHHHhhCCCCceEEE
Q 045543          122 CGWKMFQKILN-G-DAILMK-------------LILRNWDD----------EHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       122 ~~gD~~~~~p~-~-D~~~l~-------------~vlH~~~d----------~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +.+|++++++. . |++++.             .++++.|.          +...++++++.+.|+|||.+++
T Consensus       170 ~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       170 IQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             EECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            34677776654 3 888763             33332221          2567899999999999997754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.95  E-value=0.00062  Score=50.15  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=33.0

Q ss_pred             Ccccccc-c--cCC-c-ceeeechhhhcCC------hhHHHHHHHHHHhhCCCCceEEEE
Q 045543          122 CGWKMFQ-K--ILN-G-DAILMKLILRNWD------DEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       122 ~~gD~~~-~--~p~-~-D~~~l~~vlH~~~------d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +.+|+++ .  .+. . |+|++.--.+...      .+....+++++.+.|+|||.++++
T Consensus        55 ~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   55 IVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             EESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            4556665 2  343 3 9999877666532      123468999999999999999875

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.89  E-value=0.0023  Score=58.64  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeec
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      -.+||+++.+.|+|||+|+.....+
T Consensus       363 Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        363 QAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3689999999999999998877544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.89  E-value=0.0026  Score=58.48  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecC
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      .+||+++++.|+|||+|+.......
T Consensus       357 ~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        357 AELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            4799999999999999999776543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.73  E-value=0.0041  Score=57.10  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhCCCCceEEEEeee
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      ..+|+++.+.|+|||+|+.....
T Consensus       359 ~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        359 LEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCC
Confidence            57899999999999999876543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.66  E-value=0.0045  Score=56.56  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeec
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .++|+++.+.|+|||++++....+
T Consensus       352 ~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        352 SEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCCC
Confidence            589999999999999999877543

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.015  Score=47.10  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             CCc-ceeeechhhhcC-----ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcccc
Q 045543          131 LNG-DAILMKLILRNW-----DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKER  204 (239)
Q Consensus       131 p~~-D~~~l~~vlH~~-----~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~r  204 (239)
                      |+. |++.....-|+.     ....+.++-+.++++|||||.++|.|..........         |-..     -++ +
T Consensus       120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~~-----~~r-i  184 (238)
T COG4798         120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTIT-----LHR-I  184 (238)
T ss_pred             CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhhh-----hcc-c
Confidence            344 777765444443     366788999999999999999999998876643321         1100     112 2


Q ss_pred             ChhhccHHHHHhhCCCceeeEEEc
Q 045543          205 TKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       205 t~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +..-.  .+-.+++||+......+
T Consensus       185 ~~a~V--~a~veaaGFkl~aeS~i  206 (238)
T COG4798         185 DPAVV--IAEVEAAGFKLEAESEI  206 (238)
T ss_pred             ChHHH--HHHHHhhcceeeeeehh
Confidence            44445  77889999998765443

>PRK00811 spermidine synthase; Provisional

Probab=96.62  E-value=0.0034  Score=54.20  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=25.1

Q ss_pred             ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++-..-+..+..  ....+++.|++.|+|||.+++.
T Consensus       152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            998874332221221  1367899999999999988764

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.58  E-value=0.0021  Score=53.09  Aligned_cols=65  Identities=14%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccCC-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN-G  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~-~  133 (239)
                      ..+++.++ +.+..+|||||+|+|.                                          +.||-....|. +
T Consensus        62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence            35666777 8888999999999999                                          56676665553 3


Q ss_pred             --ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 --DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 --D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                        |.|++.......+        ....+.|++||+|++-
T Consensus       141 pfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             SEEEEEESSBBSS----------HHHHHTEEEEEEEEEE
T ss_pred             CcCEEEEeeccchHH--------HHHHHhcCCCcEEEEE
Confidence              9999988774433        3366678999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=96.56  E-value=0.0032  Score=50.46  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=19.3

Q ss_pred             cChhhccHHHHHhhCCCceeeEEEcC
Q 045543          204 RTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       204 rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      .|.+|.  .+.++.-||+....++.+
T Consensus       184 ~T~dEL--v~~f~~~~f~~~~tvp~p  207 (227)
T KOG1271|consen  184 FTKDEL--VEEFENFNFEYLSTVPTP  207 (227)
T ss_pred             ccHHHH--HHHHhcCCeEEEEeeccc
Confidence            478888  888998889888777664

>PHA03411 putative methyltransferase; Provisional

Probab=96.55  E-value=0.0064  Score=52.11  Aligned_cols=90  Identities=10%  Similarity=0.091  Sum_probs=58.0

Q ss_pred             CcceEEEeCCCCCC------------------------------------CccccccccC-Cc-ceeeechhhhcCChhH
Q 045543          108 KIKQLVDVGGGCGK------------------------------------CGWKMFQKIL-NG-DAILMKLILRNWDDEH  149 (239)
Q Consensus       108 ~~~~vlDvGGG~G~------------------------------------~~gD~~~~~p-~~-D~~~l~~vlH~~~d~~  149 (239)
                      ...+|||+|||+|.                                    +.+|+++... .. |+|++.--++..+.++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence            34699999999998                                    3567766322 33 9999866665543321


Q ss_pred             ------------------HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          150 ------------------CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       150 ------------------~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                                        ..+.++.+...|+|+|.++++   ....   |       ++          ....+.+||  
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~---~-------~y----------~~sl~~~~y--  198 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGR---P-------YY----------DGTMKSNKY--  198 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eecc---c-------cc----------cccCCHHHH--
Confidence                              135677778888898877665   1111   1       00          012367888  


Q ss_pred             HHHHhhCCCce
Q 045543          212 MALTAKNGFKG  222 (239)
Q Consensus       212 ~~ll~~aGf~~  222 (239)
                      +.+|+++||..
T Consensus       199 ~~~l~~~g~~~  209 (279)
T PHA03411        199 LKWSKQTGLVT  209 (279)
T ss_pred             HHHHHhcCcEe
Confidence            99999999874

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.52  E-value=0.0047  Score=50.50  Aligned_cols=113  Identities=19%  Similarity=0.298  Sum_probs=69.1

Q ss_pred             cCCC-CcceEEEeCCCCCC---------------------------CccccccccC---C---cceeeechhhhcCChhH
Q 045543          104 KGFE-KIKQLVDVGGGCGK---------------------------CGWKMFQKIL---N---GDAILMKLILRNWDDEH  149 (239)
Q Consensus       104 ~~~~-~~~~vlDvGGG~G~---------------------------~~gD~~~~~p---~---~D~~~l~~vlH~~~d~~  149 (239)
                      |.|. ...+++|+|.|.|.                           ...+....+.   .   -|+|.+-++|....+. 
T Consensus       107 p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-  185 (288)
T KOG3987|consen  107 PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-  185 (288)
T ss_pred             CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcCh-
Confidence            3355 36899999999999                           2222222111   1   2999999999776665 


Q ss_pred             HHHHHHHHHhhCCC-CceEEEEeeecCC------CCCCChhhhhhhhhhHHHhhccCCccccC--hhhccHHHHHhhCCC
Q 045543          150 CLSLLKNCYEAIPG-NGKIIIIDSTTVV------IPEATPATREASSIDIIMLMQLSGEKERT--KQEYYGMALTAKNGF  220 (239)
Q Consensus       150 ~~~iL~~~~~aL~p-gg~lli~d~~~~~------~~~~~~~~~~~~~~dl~ml~~~~~g~~rt--~~e~~~~~ll~~aGf  220 (239)
                       -++|+.++.+|+| +||+++. .++|-      +..+.+ .+....     + .. +|+.+.  ...+  .++|+++||
T Consensus       186 -~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~-~rPdn~-----L-e~-~Gr~~ee~v~~~--~e~lr~~g~  253 (288)
T KOG3987|consen  186 -FKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLP-LRPDNL-----L-EN-NGRSFEEEVARF--MELLRNCGY  253 (288)
T ss_pred             -HHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCc-CCchHH-----H-Hh-cCccHHHHHHHH--HHHHHhcCc
Confidence             5999999999999 7988764 22221      111100 011111     1 12 566442  2335  788999999


Q ss_pred             ceeeEEEcC
Q 045543          221 KGVNYESFV  229 (239)
Q Consensus       221 ~~~~~~~~~  229 (239)
                      ++..-.+.|
T Consensus       254 ~veawTrlP  262 (288)
T KOG3987|consen  254 RVEAWTRLP  262 (288)
T ss_pred             hhhhhhcCC
Confidence            987655543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.48  E-value=0.0045  Score=54.42  Aligned_cols=65  Identities=14%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccCC---
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---  132 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---  132 (239)
                      .+++..+ .++..+|||||||+|.                                          +.+|..+..+.   
T Consensus        71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            4445555 6677899999999997                                          23344332221   


Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      .|+|++...+++.        ...+.+.|+|||++++..
T Consensus       150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence            2777776554433        345677899999998853

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.46  E-value=0.0072  Score=51.61  Aligned_cols=24  Identities=13%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeec
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .+||+++.+.|+|||+|+.....+
T Consensus       179 ~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       179 KELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCCC
Confidence            569999999999999998766543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0084  Score=49.22  Aligned_cols=67  Identities=13%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccCC-c--c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILN-G--D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~-~--D  134 (239)
                      ..+++.++ ++...+||+||+|+|-                                       +.||=...+|+ +  |
T Consensus        62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518          62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence            45566777 8889999999999998                                       45666665664 4  9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .|+.....-..|+        .+.+.|+|||++++-..
T Consensus       141 ~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         141 RIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence            9998887755553        45678999999999654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.44  E-value=0.0071  Score=55.38  Aligned_cols=24  Identities=13%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeec
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .+||+++++.|+|||+|+.....+
T Consensus       346 ~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        346 LRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCC
Confidence            678999999999999987766544

>TIGR00417 speE spermidine synthase

Probab=96.39  E-value=0.0049  Score=52.80  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=26.5

Q ss_pred             ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++...-+.-+...  ....++++++.|+|||.+++.
T Consensus       147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            8888765432222222  468899999999999998875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.36  E-value=0.012  Score=49.88  Aligned_cols=21  Identities=5%  Similarity=0.134  Sum_probs=17.1

Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .+.+++++.+.|+|||++++.
T Consensus       195 ~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       195 LRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             HHHHHHHHHHhcCCCCEEEEE
Confidence            358888888999999988764

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.36  E-value=0.0067  Score=42.71  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKY   62 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~   62 (239)
                      .|.+.|.+.+  ++.|+.|||+.+|+    +...+.|+|+.|...  .  ...++.|.+++....
T Consensus         9 ~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~   67 (91)
T smart00346        9 AVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLE   67 (91)
T ss_pred             HHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHH
Confidence            4677787742  58999999999999    999999999999887  2  234678988876543

>PLN02366 spermidine synthase

Probab=96.30  E-value=0.0071  Score=52.89  Aligned_cols=37  Identities=14%  Similarity=0.081  Sum_probs=24.3

Q ss_pred             ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++-..-+.-+..  -...++++++++|+|||.+++.
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            888763322211111  1457899999999999988663

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.22  E-value=0.0085  Score=55.96  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=17.1

Q ss_pred             HHHHHHHHHhhCCCCceEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli  169 (239)
                      -++|++++.+.|+|||++++
T Consensus       248 ~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        248 YFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             HHHHHHHHHHhccCCCEEEE
Confidence            45788999999999998875

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.20  E-value=0.0079  Score=47.66  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ..+++.++ +.+..+++|+|||.|.
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~   26 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGA   26 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccH
Confidence            45677777 7777899999999999

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=96.19  E-value=0.0017  Score=41.19  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=33.3

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|.+.|++++  +++|+.|||+++|+    +...+.|+|+.|+..
T Consensus         7 ~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~   45 (52)
T PF09339_consen    7 RILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEE   45 (52)
T ss_dssp             HHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            4677888765  67899999999999    999999999999876

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.19  E-value=0.029  Score=50.98  Aligned_cols=57  Identities=14%  Similarity=0.081  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc-
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF-  228 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~-  228 (239)
                      -++|++.+.+.|+|||.+++ |.-.  +                           ..++.  .+++++.||..+++.+- 
T Consensus       360 yr~Ii~~a~~~LkpgG~lil-EiG~--~---------------------------Q~e~V--~~ll~~~Gf~~v~v~kDl  407 (423)
T PRK14966        360 IRTLAQGAPDRLAEGGFLLL-EHGF--D---------------------------QGAAV--RGVLAENGFSGVETLPDL  407 (423)
T ss_pred             HHHHHHHHHHhcCCCcEEEE-EECc--c---------------------------HHHHH--HHHHHHCCCcEEEEEEcC
Confidence            34677777788888887653 2210  0                           11244  77788889887776553 


Q ss_pred             CCceeEEEEE
Q 045543          229 VCNFYIMEFI  238 (239)
Q Consensus       229 ~~~~~vie~~  238 (239)
                      .+...++.++
T Consensus       408 ~G~dR~v~~~  417 (423)
T PRK14966        408 AGLDRVTLGK  417 (423)
T ss_pred             CCCcEEEEEE
Confidence            3444444443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.17  E-value=0.0066  Score=55.78  Aligned_cols=90  Identities=22%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             ccccccCchHHHHHHHHHHhcccccHHHHHhhccCC---CCcceEEEeCCCCCC--------------------------
Q 045543           71 YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGF---EKIKQLVDVGGGCGK--------------------------  121 (239)
Q Consensus        71 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDvGGG~G~--------------------------  121 (239)
                      |+.+++||..-+.|.+|+..       .+.+....-   .+...|+|||+|+|.                          
T Consensus       153 Ye~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~  225 (448)
T PF05185_consen  153 YEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN  225 (448)
T ss_dssp             HHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred             HhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence            44556777777777777642       233332211   135789999999999                          


Q ss_pred             --------------------Ccccccc-ccCC-cceeeechhhhcCC-hhHHHHHHHHHHhhCCCCceEE
Q 045543          122 --------------------CGWKMFQ-KILN-GDAILMKLILRNWD-DEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       122 --------------------~~gD~~~-~~p~-~D~~~l~~vlH~~~-d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                                          +.+|+.+ ..|+ .|+++.-.. -.+. .|-....|....+-|+|||.++
T Consensus       226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence                                6677776 6675 598875444 2333 3445567888889999998654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.10  E-value=0.0068  Score=51.17  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.+++.+  +++|+.|||+++|+    +...+.|+|..|+..  .+.++++|.+++....|
T Consensus        13 ~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~~~l   70 (248)
T TIGR02431        13 AVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSDGRLFWLTPRVLRL   70 (248)
T ss_pred             HHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCEEEecHHHHHH
Confidence            4667777643  68999999999999    999999999999998  44557899999876554

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.01  E-value=0.022  Score=47.78  Aligned_cols=33  Identities=12%  Similarity=0.167  Sum_probs=23.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |++++-     -+.+.-..++..+.+.|+|||.|++-+
T Consensus       146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            887763     333455688999999999999765533

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.98  E-value=0.014  Score=48.26  Aligned_cols=70  Identities=13%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             HhhccCCCC--cceEEEeCCCCCC-----------------------------Cccccc-----cccC--Cc--ceeeec
Q 045543          100 LDYYKGFEK--IKQLVDVGGGCGK-----------------------------CGWKMF-----QKIL--NG--DAILMK  139 (239)
Q Consensus       100 ~~~~~~~~~--~~~vlDvGGG~G~-----------------------------~~gD~~-----~~~p--~~--D~~~l~  139 (239)
                      ++.++ +++  ...|||||||+|.                             +.||+.     +.+|  .|  |-++.-
T Consensus        41 LELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   41 LELLA-LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             HHHhh-CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence            33444 444  7899999999998                             456654     3333  44  655543


Q ss_pred             hhh----hc-----CChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          140 LIL----RN-----WDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       140 ~vl----H~-----~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+    |.     .+......++..++.+|++|+|-+..
T Consensus       120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            333    21     13334456688899999999998764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=95.95  E-value=0.018  Score=48.60  Aligned_cols=21  Identities=10%  Similarity=0.320  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      -..+++.+++.|+|||++.++
T Consensus       149 le~~i~~a~~~lk~~G~l~~V  169 (248)
T COG4123         149 LEDLIRAAAKLLKPGGRLAFV  169 (248)
T ss_pred             HHHHHHHHHHHccCCCEEEEE
Confidence            457889999999999999885

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.77  E-value=0.021  Score=49.98  Aligned_cols=70  Identities=24%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-ce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      .+++.-.+|.+ +.|||||+|+|.                                        ++|..-+ ++|+. |+
T Consensus       168 Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dv  246 (517)
T KOG1500|consen  168 AILENHSDFQD-KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDV  246 (517)
T ss_pred             HHHhcccccCC-cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccE
Confidence            44444332554 789999999998                                        5555544 67764 98


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEE
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                      ++.--.=..+-.+....---.+++-|+|.|+.+
T Consensus       247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            875433222333433333445679999998765

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.73  E-value=0.032  Score=47.06  Aligned_cols=84  Identities=15%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             HHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------
Q 045543           84 LNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------  121 (239)
Q Consensus        84 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------  121 (239)
                      |...|...+..    .+..|+.... ..+..+|+|.|-|+|.                                      
T Consensus        67 ~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~  145 (256)
T COG2519          67 YLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG  145 (256)
T ss_pred             HHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc
Confidence            33336555543    2556777776 8999999999999999                                      


Q ss_pred             -----Cccccccc-cCCc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          122 -----CGWKMFQK-ILNG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       122 -----~~gD~~~~-~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                           ..+|..+. .++. |++++     |.+|+-  ..|.++.++|+|||.+++.-++.+
T Consensus       146 d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         146 DRVTLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             cceEEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence                 23454442 2222 66654     777774  889999999999999998755443

>PRK11569 transcriptional repressor IclR; Provisional

Probab=95.72  E-value=0.015  Score=49.94  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|++..  +++|+.|||+++|+    +...+.|+|..|+..  .  ..+.++|++.+....|
T Consensus        32 ~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~L   91 (274)
T PRK11569         32 KLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFIV   91 (274)
T ss_pred             HHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHHHH
Confidence            4677777643  68999999999999    999999999999998  3  2356899998876554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.71  E-value=0.062  Score=42.64  Aligned_cols=78  Identities=15%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc-c-----cC
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-K-----IL  131 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~-----~p  131 (239)
                      .++..+...+ |++..-|+.+|.|+|.                                     +.||.|. .     .+
T Consensus        36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~  114 (194)
T COG3963          36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK  114 (194)
T ss_pred             HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence            3667777888 9999999999999999                                     6677664 2     22


Q ss_pred             -C-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          132 -N-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       132 -~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                       + -|.++..-=+-+++-....+||+++..-|++||.++-..+-
T Consensus       115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence             2 39999888888999999999999999999999998887664

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=95.64  E-value=0.017  Score=48.90  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC--CCCCeEecChhhHHHH
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG--DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~--~~~~~y~~t~~s~~l~   64 (239)
                      |.|.+.|++.+  .++|+.|||+++|+    ++..+.|+|..|+..  .+  .++++|.+++-.-.|-
T Consensus         7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~lg   68 (246)
T COG1414           7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLELG   68 (246)
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHHHH
Confidence            35778888733  45779999999999    999999999999998  32  3357899998765543

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=95.55  E-value=0.019  Score=49.18  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|++++  +++|+.|||+++|+    +...+.|+|..|+..  .  ....++|.+++-...|
T Consensus        29 ~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~~L   88 (271)
T PRK10163         29 AILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNV   88 (271)
T ss_pred             HHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHHHH
Confidence            4677787654  68999999999999    999999999999998  2  3357889998776544

>PRK01581 speE spermidine synthase; Validated

Probab=95.54  E-value=0.019  Score=51.14  Aligned_cols=21  Identities=10%  Similarity=0.151  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...+++.|++.|+|||.+++.
T Consensus       247 T~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        247 TSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEEEe
Confidence            357899999999999988775

>PRK03612 spermidine synthase; Provisional

Probab=95.45  E-value=0.024  Score=53.24  Aligned_cols=20  Identities=5%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+++++++.|+|||++++.
T Consensus       395 ~ef~~~~~~~L~pgG~lv~~  414 (521)
T PRK03612        395 VEFYRLLKRRLAPDGLLVVQ  414 (521)
T ss_pred             HHHHHHHHHhcCCCeEEEEe
Confidence            36899999999999998875

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=95.34  E-value=0.022  Score=48.52  Aligned_cols=57  Identities=9%  Similarity=0.052  Sum_probs=46.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l~   64 (239)
                      .|.+.|.+++  +++|+.|||+++|+    +...+.|+|+.|...  .  ..++++|++++....|.
T Consensus        15 ~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         15 MVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHH
Confidence            4677787653  57999999999999    999999999999998  2  23568899998765553

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.33  E-value=0.0082  Score=44.10  Aligned_cols=85  Identities=16%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             ceeeechh---hh-cCChhHHHHHHHHHHhhCCCCceEEEEee-ecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          134 DAILMKLI---LR-NWDDEHCLSLLKNCYEAIPGNGKIIIIDS-TTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       134 D~~~l~~v---lH-~~~d~~~~~iL~~~~~aL~pgg~lli~d~-~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      |+|++-.|   +| +|.|+-.+.+++++++.|+|||++++ |+ -...-.      + ..-+.-.+..++ ..-...+++
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~------~-~~~~~~~~~~n~-~~i~lrP~~   73 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYK------K-AKRLSEEIRENY-KSIKLRPDQ   73 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHH------T-TTTS-HHHHHHH-HH----GGG
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHH------H-HhhhhHHHHhHH-hceEEChHH
Confidence            66666544   34 78999999999999999999998866 32 111000      0 000000111111 222345567


Q ss_pred             ccHHHHHhh--CCCceeeEEEcC
Q 045543          209 YYGMALTAK--NGFKGVNYESFV  229 (239)
Q Consensus       209 ~~~~~ll~~--aGf~~~~~~~~~  229 (239)
                      +  .++|.+  .||+.++....+
T Consensus        74 F--~~~L~~~evGF~~~e~~~~~   94 (110)
T PF06859_consen   74 F--EDYLLEPEVGFSSVEELGVP   94 (110)
T ss_dssp             H--HHHHTSTTT---EEEEE---
T ss_pred             H--HHHHHhcccceEEEEEcccC
Confidence            8  887877  699998866553

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=95.25  E-value=0.025  Score=48.03  Aligned_cols=56  Identities=9%  Similarity=0.127  Sum_probs=45.1

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC--CCCCeEecChhhHHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG--DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~--~~~~~y~~t~~s~~l~   64 (239)
                      .|.+.|++.   +++|+.|||+++|+    +...+.|+|+.|+..  .+  .+.++|.+++....|-
T Consensus        18 ~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~~lg   77 (257)
T PRK15090         18 GILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELG   77 (257)
T ss_pred             HHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHHHHH
Confidence            456677663   58999999999999    999999999999998  32  3568899998765543

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=95.15  E-value=0.038  Score=37.07  Aligned_cols=50  Identities=18%  Similarity=0.294  Sum_probs=38.8

Q ss_pred             cchHhHhcCCCC-CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C---CCCCCeEecCh
Q 045543            3 VFEIMAKAGPRA-KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A---GDDRRLQRLAP   58 (239)
Q Consensus         3 ifd~L~~~g~~~-~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~---~~~~~~y~~t~   58 (239)
                      |...|.++|  + ++|+.|||+++|+    +...+.|+|..|...  .   ...++.|..+.
T Consensus        11 IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~   66 (68)
T smart00550       11 ILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD   66 (68)
T ss_pred             HHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence            566777764  3 3999999999999    999999999999887  2   12347777654

Helix-turn-helix-containing domain. Also known as Zab.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.98  E-value=0.2  Score=44.28  Aligned_cols=97  Identities=12%  Similarity=0.046  Sum_probs=53.3

Q ss_pred             Ccccccc-ccCCc--ceeeechhhhcCC-------h------------------------------hHHHHHHHHHHhhC
Q 045543          122 CGWKMFQ-KILNG--DAILMKLILRNWD-------D------------------------------EHCLSLLKNCYEAI  161 (239)
Q Consensus       122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~-------d------------------------------~~~~~iL~~~~~aL  161 (239)
                      ++|.|+. =+|..  |+++.++.||=.+       |                              ++-..+|+.=++-|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            7899998 56764  9999999998443       1                              22334555566779


Q ss_pred             CCCceEEEEeeecCCCCCCC-----hhh-hhhhhhhHHHhhccCCc--------------cccChhhccHHHHHhhCC-C
Q 045543          162 PGNGKIIIIDSTTVVIPEAT-----PAT-REASSIDIIMLMQLSGE--------------KERTKQEYYGMALTAKNG-F  220 (239)
Q Consensus       162 ~pgg~lli~d~~~~~~~~~~-----~~~-~~~~~~dl~ml~~~~~g--------------~~rt~~e~~~~~ll~~aG-f  220 (239)
                      +|||++++.=...++.....     ... ....+.||   +.  .|              -.+|.+|+  ++.+++.| |
T Consensus       174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dM---v~--eGlI~~ek~dsfniP~Y~ps~eEv--~~~I~~~gsF  246 (334)
T PF03492_consen  174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDM---VA--EGLISEEKVDSFNIPIYFPSPEEV--RAIIEEEGSF  246 (334)
T ss_dssp             EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHH---HH--TTSS-HCCCCTG--SBB---HHHH--HHHHHHHTSE
T ss_pred             ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHH---HH--cCCcCHHHhhceeCCccCCCHHHH--HHHHhcCCCE
Confidence            99999999766555521110     000 01222332   21  22              34588999  99999887 6


Q ss_pred             ceeeE
Q 045543          221 KGVNY  225 (239)
Q Consensus       221 ~~~~~  225 (239)
                      ++.++
T Consensus       247 ~I~~l  251 (334)
T PF03492_consen  247 EIEKL  251 (334)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65444

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=94.92  E-value=0.023  Score=39.63  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChh
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPV   59 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~   59 (239)
                      .|+.++.+++.|.+|||+++++    ++..++++|+.|...     ..-.+|.|.++..
T Consensus        16 ~la~~~~~~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~   70 (83)
T PF02082_consen   16 YLARHPDGKPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSRGRGGGYRLARP   70 (83)
T ss_dssp             HHHCTTTSC-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-
T ss_pred             HHHhCCCCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecCCCCCceeecCC
Confidence            3454443457999999999999    999999999999987     1223577887754

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.84  E-value=0.26  Score=42.26  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             Ccccccc--ccC--C-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHh
Q 045543          122 CGWKMFQ--KIL--N-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIML  195 (239)
Q Consensus       122 ~~gD~~~--~~p--~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml  195 (239)
                      .+|||.+  +-+  + . |+|+-...+-  +.++....|+.|++.|||||..+=+-++.=...            +..  
T Consensus       149 ~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--  212 (270)
T PF07942_consen  149 CAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--  212 (270)
T ss_pred             ecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--
Confidence            7899987  222  1 3 8888776663  356688999999999999995544444322111            000  


Q ss_pred             hccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          196 MQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       196 ~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ......-+.|.+|.  .++.++.||++++...
T Consensus       213 ~~~~~sveLs~eEi--~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  213 IPNEMSVELSLEEI--KELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCcccCCCHHHH--HHHHHHCCCEEEEEEE
Confidence            00012356799999  9999999999987654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.57  E-value=0.02  Score=44.80  Aligned_cols=38  Identities=29%  Similarity=0.370  Sum_probs=36.1

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .|+++..||+.++.-++-...|+.|++.|+|||+|-|.
T Consensus        48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            39999999999999999999999999999999999885

>TIGR00478 tly hemolysin TlyA family protein

Probab=94.43  E-value=0.097  Score=43.78  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=17.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ..+++.++...+..+++|+|||+|.
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~   88 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGG   88 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCH
Confidence            4555555411356799999999999

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00755 ksgA dimethyladenosine transferase

Probab=94.42  E-value=0.067  Score=45.25  Aligned_cols=25  Identities=16%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ +.+..+|+|||||.|.
T Consensus        18 ~~~i~~~~~-~~~~~~VLEiG~G~G~   42 (253)
T TIGR00755        18 IQKIVEAAN-VLEGDVVLEIGPGLGA   42 (253)
T ss_pred             HHHHHHhcC-CCCcCEEEEeCCCCCH
Confidence            456677776 7778999999999999

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=94.32  E-value=0.056  Score=45.07  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccC------hh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERT------KQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt------~~  207 (239)
                      |+++.+--+| |..+ ...-+.+|..+|||+|.++ .-++-.+.    +.+ ......+.-+-- .||-.-.      ..
T Consensus       139 DLiisSlslH-W~Nd-LPg~m~~ck~~lKPDg~Fi-asmlggdT----LyE-LR~slqLAelER-~GGiSphiSPf~qvr  209 (325)
T KOG2940|consen  139 DLIISSLSLH-WTND-LPGSMIQCKLALKPDGLFI-ASMLGGDT----LYE-LRCSLQLAELER-EGGISPHISPFTQVR  209 (325)
T ss_pred             hhhhhhhhhh-hhcc-CchHHHHHHHhcCCCccch-hHHhcccc----HHH-HHHHhhHHHHHh-ccCCCCCcChhhhhh
Confidence            9999999997 5432 4677899999999999553 33332222    111 111222222211 1332221      23


Q ss_pred             hccHHHHHhhCCCceeeE
Q 045543          208 EYYGMALTAKNGFKGVNY  225 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~  225 (239)
                      +.  -.+|..|||....+
T Consensus       210 Di--G~LL~rAGF~m~tv  225 (325)
T KOG2940|consen  210 DI--GNLLTRAGFSMLTV  225 (325)
T ss_pred             hh--hhHHhhcCccccee
Confidence            34  78899999997655

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.66  E-value=0.48  Score=42.71  Aligned_cols=51  Identities=10%  Similarity=0.141  Sum_probs=34.5

Q ss_pred             ccccc-ccCCc--ceeeechhhhcCCh--h----------------------------------HHHHHHHHHHhhCCCC
Q 045543          124 WKMFQ-KILNG--DAILMKLILRNWDD--E----------------------------------HCLSLLKNCYEAIPGN  164 (239)
Q Consensus       124 gD~~~-~~p~~--D~~~l~~vlH~~~d--~----------------------------------~~~~iL~~~~~aL~pg  164 (239)
                      |.|+. -+|..  ++++.++.||=.+.  +                                  |-..+|+-=++-|.||
T Consensus       151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpG  230 (386)
T PLN02668        151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRG  230 (386)
T ss_pred             ccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            66666 56753  89999999984441  1                                  1234566667789999


Q ss_pred             ceEEEEeeec
Q 045543          165 GKIIIIDSTT  174 (239)
Q Consensus       165 g~lli~d~~~  174 (239)
                      |++++.=.-.
T Consensus       231 G~mvl~~~Gr  240 (386)
T PLN02668        231 GAMFLVCLGR  240 (386)
T ss_pred             cEEEEEEecC
Confidence            9999875433

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=0.076  Score=43.63  Aligned_cols=20  Identities=15%  Similarity=0.394  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhhCCCCceEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli  169 (239)
                      +.++.++..+-|+|||+++|
T Consensus       172 a~~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  172 ASELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             ccccHHHHHHhhccCCeEEE
Confidence            45788999999999999998

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=93.40  E-value=0.1  Score=44.12  Aligned_cols=84  Identities=14%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             HHHHHHHhccccc----HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------
Q 045543           83 VLNTAMLSHNSIV----MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------  121 (239)
Q Consensus        83 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------  121 (239)
                      .|...|...+...    +..|+-..+ ..+..+||+.|.|+|.                                     
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl   90 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL   90 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC
Confidence            3555555544432    456777777 8999999999999999                                     


Q ss_pred             ------Ccccccc-ccC----C-cceeeechhhhcCChhHHHHHHHHHHhhC-CCCceEEEEeeec
Q 045543          122 ------CGWKMFQ-KIL----N-GDAILMKLILRNWDDEHCLSLLKNCYEAI-PGNGKIIIIDSTT  174 (239)
Q Consensus       122 ------~~gD~~~-~~p----~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL-~pgg~lli~d~~~  174 (239)
                            .-+|..+ .++    . .|.++|     |.+++-  ..+.++.++| +|||+|.+.-+++
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~i  149 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCI  149 (247)
T ss_dssp             CTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSH
T ss_pred             CCCceeEecceecccccccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCH
Confidence                  2233322 121    2 266655     777664  6799999999 8999999875543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=93.24  E-value=0.17  Score=46.85  Aligned_cols=32  Identities=25%  Similarity=0.575  Sum_probs=24.0

Q ss_pred             hhcCChhHH-------HHHHHHHHhhCCCCceEEEEeee
Q 045543          142 LRNWDDEHC-------LSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       142 lH~~~d~~~-------~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      ...|+.++.       .+||+++.+.|+|||+|+-....
T Consensus       206 ~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        206 LKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            445665544       78999999999999988665543

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=93.12  E-value=0.13  Score=31.26  Aligned_cols=39  Identities=15%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEec
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRL   56 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~   56 (239)
                      -+.|..+||+.+|+    +...+.+.|+.|...  .+...+.|..
T Consensus         7 ~~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~~~~~~i   47 (48)
T smart00419        7 LPLTRQEIAELLGL----TRETVSRTLKRLEKEGLISREGGRIVI   47 (48)
T ss_pred             eccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            37899999999999    999999999999997  3444466654

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=93.00  E-value=0.18  Score=38.52  Aligned_cols=52  Identities=12%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK   61 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~   61 (239)
                      .|+.+..+++.|.+|||+++++    ++..++++|+.|...     .....|.|.++.-..
T Consensus        16 ~La~~~~~~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~   72 (135)
T TIGR02010        16 DLALNAETGPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAE   72 (135)
T ss_pred             HHHhCCCCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHH
Confidence            3443322368999999999999    999999999999886     123356788876544

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=92.89  E-value=0.031  Score=45.60  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...+|+.+++.|+|||+|.+.
T Consensus       112 ~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen  112 NPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchHHHHHHHHcCCCCEEEEE
Confidence            457899999999999998774

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=92.80  E-value=0.16  Score=33.28  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCC-CCeEecCh
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDD-RRLQRLAP   58 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~-~~~y~~t~   58 (239)
                      .++|..|||+.+|+    ++..+.++|+.|...  .+.. .+.|..+|
T Consensus        24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRRGRGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence            58999999999999    999999999999987  3333 37787764

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.62  E-value=0.7  Score=40.37  Aligned_cols=90  Identities=10%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             Ccccccccc--CC---c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHh
Q 045543          122 CGWKMFQKI--LN---G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIML  195 (239)
Q Consensus       122 ~~gD~~~~~--p~---~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml  195 (239)
                      .+|||.+-.  ++   . |+|+....+-  +..+...-|..|.+.|+|||..+-+.+++=.-.+.+         +..  
T Consensus       243 caGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~~--  309 (369)
T KOG2798|consen  243 CAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GVE--  309 (369)
T ss_pred             cccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CCc--
Confidence            569998833  33   3 8888876652  456778999999999999997776665432211110         000  


Q ss_pred             hccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          196 MQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       196 ~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                        ...+-+.|.++.  ..+.+.-||++.+...+
T Consensus       310 --~~~siEls~edl--~~v~~~~GF~~~ke~~I  338 (369)
T KOG2798|consen  310 --NEMSIELSLEDL--KRVASHRGFEVEKERGI  338 (369)
T ss_pred             --ccccccccHHHH--HHHHHhcCcEEEEeeee
Confidence              012456789999  99999999999876544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=92.56  E-value=0.23  Score=42.88  Aligned_cols=21  Identities=14%  Similarity=0.263  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhhCCCCceEEE
Q 045543          149 HCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ...+|+..+.+.|+|||.+++
T Consensus       216 ~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         216 VYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             HHHHHHHhhHHHcCCCcEEEE
Confidence            456788888888999775544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=92.43  E-value=0.25  Score=39.39  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=29.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|+.+.|+++  ++....+++-+.+.|+|+|.+++.-...
T Consensus       121 D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  121 DVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             SEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             CEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999999964  5777899999999999999977765544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=92.23  E-value=0.21  Score=39.55  Aligned_cols=45  Identities=13%  Similarity=0.079  Sum_probs=36.9

Q ss_pred             CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543           13 RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK   61 (239)
Q Consensus        13 ~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~   61 (239)
                      +++.|+++||+++++    ++..+.++|+.|...     ....+|.|.+..-..
T Consensus        23 ~~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~   72 (164)
T PRK10857         23 AGPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAS   72 (164)
T ss_pred             CCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHH
Confidence            368999999999999    999999999999887     223456798875544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=92.19  E-value=0.13  Score=46.10  Aligned_cols=54  Identities=9%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             Ccccccc-ccCC--cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          122 CGWKMFQ-KILN--GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       122 ~~gD~~~-~~p~--~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      +.+||.+ ++++  .|.+.+-.+..+-++.  .+.++.++++++|||.+++.|.+....
T Consensus       165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  165 VVADFGKMPFEDNTFDGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK  221 (364)
T ss_pred             ehhhhhcCCCCccccCcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence            6667766 5554  2888877777777776  488999999999999999999876544

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.02  E-value=0.34  Score=43.45  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC--------------------------------------------------Cccccc
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------------CGWKMF  127 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------------~~gD~~  127 (239)
                      .+++.+. .......+|+|+|.|.                                                  +-|+|.
T Consensus       183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            4455555 6678899999999999                                                  556665


Q ss_pred             cc------cCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          128 QK------ILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       128 ~~------~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      .+      ++++++++..++.  ++++...++= ++..-+++|-|++-.+.+.+..
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~  314 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISSKPLVPRP  314 (419)
T ss_pred             CHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEeccccccccc
Confidence            42      2346899999996  6777666655 9999999999999999888743

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=92.01  E-value=0.21  Score=38.98  Aligned_cols=53  Identities=19%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKY   62 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~   62 (239)
                      .|+..+.+++.|+++||++.++    ++..|.++|..|...     ..-..|.|.++.-...
T Consensus        16 ~LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~~   73 (150)
T COG1959          16 YLALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPEE   73 (150)
T ss_pred             HHHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChHH
Confidence            4555443358999999999999    999999999999886     2223688999876654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=91.85  E-value=0.86  Score=37.19  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             cCCCCcceEEEeCCCCCC---------------------------------------CccccccccCCc-ceeeechhhh
Q 045543          104 KGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILNG-DAILMKLILR  143 (239)
Q Consensus       104 ~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~~-D~~~l~~vlH  143 (239)
                      |++-..++|||.|.|+|.                                       ...|..- .|.+ |+++++.++.
T Consensus        75 PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDlfy  153 (218)
T COG3897          75 PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDLFY  153 (218)
T ss_pred             ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeeceec
Confidence            336678999999999999                                       1112221 2334 9999999996


Q ss_pred             cCChhHHHHHHHHHHhhCCC-CceEEEEeee
Q 045543          144 NWDDEHCLSLLKNCYEAIPG-NGKIIIIDST  173 (239)
Q Consensus       144 ~~~d~~~~~iL~~~~~aL~p-gg~lli~d~~  173 (239)
                      +-+  .+.+++. +...|+. |..++|-|.-
T Consensus       154 ~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         154 NHT--EADRLIP-WKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             Cch--HHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence            554  4567777 6666655 5555555543

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=91.82  E-value=0.19  Score=34.48  Aligned_cols=47  Identities=17%  Similarity=0.076  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..+|+..+++    +...+.+.|+.|...  .+..++.|..|+-+..++
T Consensus        18 ~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   18 GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFL   66 (77)
T ss_dssp             T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHH
T ss_pred             CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHH
Confidence            79999999999999    999999999999998  455789999999998765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.80  E-value=0.66  Score=38.09  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=44.1

Q ss_pred             ccHHHHHhhccCCCCcceEEEeCCCCCC---------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHH
Q 045543           94 IVMNRILDYYKGFEKIKQLVDVGGGCGK---------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCY  158 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~  158 (239)
                      ....++.+.|.-+++...|+|+|..+|.               ++-|+-.--|-.++.++...++   ++   ..++++.
T Consensus        31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~---~~---~~~~~l~  104 (205)
T COG0293          31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDIT---DE---DTLEKLL  104 (205)
T ss_pred             HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeecc---Cc---cHHHHHH
Confidence            3455777777657888999999999999               2223322111124666666553   22   2345555


Q ss_pred             hhCCCCc-eEEEEeee
Q 045543          159 EAIPGNG-KIIIIDST  173 (239)
Q Consensus       159 ~aL~pgg-~lli~d~~  173 (239)
                      ..+.... -+++.|..
T Consensus       105 ~~l~~~~~DvV~sD~a  120 (205)
T COG0293         105 EALGGAPVDVVLSDMA  120 (205)
T ss_pred             HHcCCCCcceEEecCC
Confidence            5555544 66777764

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=91.62  E-value=0.22  Score=37.54  Aligned_cols=45  Identities=20%  Similarity=0.171  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C---CCCCCeEecChhhHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A---GDDRRLQRLAPVAKY   62 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~---~~~~~~y~~t~~s~~   62 (239)
                      ++.|.+|||+.+++    ++..+.++|+.|...  .   ...+|.|.++.-...
T Consensus        24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~   73 (132)
T TIGR00738        24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEE   73 (132)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHH
Confidence            59999999999999    999999999999986  1   223567888755543

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=91.58  E-value=0.19  Score=33.68  Aligned_cols=37  Identities=11%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |-+.|.+.   +.+|..|||.++++    +++.++.+|..|...
T Consensus         5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~k   41 (69)
T PF09012_consen    5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRK   41 (69)
T ss_dssp             HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCC
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            55677775   69999999999999    999999999999987

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PLN02476 O-methyltransferase

Probab=91.51  E-value=0.8  Score=39.48  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=25.4

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |++++     |-+..+-...++.+.+.|+|||.|++ |.++
T Consensus       196 D~VFI-----Da~K~~Y~~y~e~~l~lL~~GGvIV~-DNvL  230 (278)
T PLN02476        196 DFAFV-----DADKRMYQDYFELLLQLVRVGGVIVM-DNVL  230 (278)
T ss_pred             CEEEE-----CCCHHHHHHHHHHHHHhcCCCcEEEE-ecCc
Confidence            66655     33456678899999999999997655 5443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=91.42  E-value=0.3  Score=41.49  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..+++..+ ..+..+|+|||||.|.
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~   42 (258)
T PRK14896         18 VDRIVEYAE-DTDGDPVLEIGPGKGA   42 (258)
T ss_pred             HHHHHHhcC-CCCcCeEEEEeCccCH
Confidence            456666666 6677899999999999

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=91.09  E-value=0.28  Score=30.10  Aligned_cols=36  Identities=8%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS   45 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~   45 (239)
                      |+..|.++   +++|..|||+++|+    +...+.+.|+-|..
T Consensus         8 Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~   43 (48)
T PF13412_consen    8 ILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEE   43 (48)
T ss_dssp             HHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHH
Confidence            66778885   47999999999999    99999999988764

...

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=91.09  E-value=0.25  Score=43.55  Aligned_cols=61  Identities=23%  Similarity=0.161  Sum_probs=38.6

Q ss_pred             CcceEEEeCCCCCC----------------------------------------Ccccccc-ccC-Cc-ceeeechhhhc
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL-NG-DAILMKLILRN  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p-~~-D~~~l~~vlH~  144 (239)
                      +.++|+|||||+|.                                        +.|..-+ .+| +. |+++.-|.=+-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~  139 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF  139 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence            45899999999999                                        2232322 466 34 88887665443


Q ss_pred             C-ChhHHHHHHHHHHhhCCCCceEE
Q 045543          145 W-DDEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       145 ~-~d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                      . -+.....+|-.=-+-|+|||.++
T Consensus       140 Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  140 LLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHhhhhhhhhhhhhhccCCCceEc
Confidence            2 23333445555556799999665

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=90.89  E-value=0.37  Score=46.98  Aligned_cols=22  Identities=14%  Similarity=0.312  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhCCCCceEEEE
Q 045543          149 HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .-..+++.+.+.|+|||.|++.
T Consensus       634 ~y~~l~~~a~~lL~~gG~l~~~  655 (702)
T PRK11783        634 DHVALIKDAKRLLRPGGTLYFS  655 (702)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEE
Confidence            3467899999999999988664

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=90.89  E-value=0.096  Score=34.85  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|-..   ++.|++|||+.+|+    +...+.+.|+-|...
T Consensus        13 vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~   49 (68)
T PF01978_consen   13 VYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEK   49 (68)
T ss_dssp             HHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            34455443   79999999999999    999999999999987

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=90.28  E-value=1.7  Score=38.21  Aligned_cols=26  Identities=15%  Similarity=0.043  Sum_probs=21.3

Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      |+.-+.+..  .+.|++.|.+.++++..
T Consensus       268 ~kk~~l~~l--~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        268 SKKENLPPL--YRALKKVGAVEVKTIEM  293 (321)
T ss_pred             eccCCHHHH--HHHHHHcCCceEEEEEE
Confidence            555688988  99999999987777765

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=90.15  E-value=0.29  Score=44.93  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=17.5

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ..+++.++ ..+..+|+|+|||+|.
T Consensus       287 ~~vl~~l~-~~~~~~VLDlgcGtG~  310 (443)
T PRK13168        287 ARALEWLD-PQPGDRVLDLFCGLGN  310 (443)
T ss_pred             HHHHHHhc-CCCCCEEEEEeccCCH
Confidence            34444444 4566799999999999

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=90.04  E-value=0.32  Score=36.68  Aligned_cols=51  Identities=22%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C---CCCCCeEecChh
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A---GDDRRLQRLAPV   59 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~---~~~~~~y~~t~~   59 (239)
                      ...|+..+ +++.|+.|||+++++    ++..+.++|+.|...  .   ....|.|.+...
T Consensus        15 l~~la~~~-~~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~g~~ggy~l~~~   70 (130)
T TIGR02944        15 LTTLAQND-SQPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKRGVEGGYTLARA   70 (130)
T ss_pred             HHHHHhCC-CCCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecCCCCCChhhcCC
Confidence            34555532 368999999999999    999999999999987  1   122456766543

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=89.85  E-value=4.6  Score=34.41  Aligned_cols=85  Identities=15%  Similarity=0.083  Sum_probs=53.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcc----ccChhhc
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEK----ERTKQEY  209 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~----~rt~~e~  209 (239)
                      =++++-.++..++.+++.++|+.+.+...||+.|+ .|.+.+-.... ..........  +.... .+.    ..+.++.
T Consensus       160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  234 (260)
T TIGR00027       160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEW-RAGMRAPVYH--AARGV-DGSGLVFGIDRADV  234 (260)
T ss_pred             eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhH-HHHHHHHHHH--hhhcc-cccccccCCChhhH
Confidence            48889999999999999999999999888888765 56655421111 0000000000  00000 011    1256778


Q ss_pred             cHHHHHhhCCCceeeE
Q 045543          210 YGMALTAKNGFKGVNY  225 (239)
Q Consensus       210 ~~~~ll~~aGf~~~~~  225 (239)
                        .++|++.||+..+.
T Consensus       235 --~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       235 --AEWLAERGWRASEH  248 (260)
T ss_pred             --HHHHHHCCCeeecC
Confidence              99999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=89.60  E-value=0.53  Score=30.85  Aligned_cols=43  Identities=9%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-----C--CCCCeEecChhh
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-----G--DDRRLQRLAPVA   60 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-----~--~~~~~y~~t~~s   60 (239)
                      ++.|..+||+.+++    +...+.+.++.|...  .     +  .....|.+||.+
T Consensus        17 ~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen   17 GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            79999999999999    999999999999987  1     1  122458888753

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=89.53  E-value=0.48  Score=29.87  Aligned_cols=38  Identities=8%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...|.++.  +++|++|||+.+++    +.+.+.+-+..|...
T Consensus         5 il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~   42 (55)
T PF08279_consen    5 ILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREW   42 (55)
T ss_dssp             HHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHC
Confidence            455664433  67999999999999    999999999888664

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=89.29  E-value=0.68  Score=37.86  Aligned_cols=14  Identities=21%  Similarity=0.211  Sum_probs=12.4

Q ss_pred             CcceEEEeCCCCCC
Q 045543          108 KIKQLVDVGGGCGK  121 (239)
Q Consensus       108 ~~~~vlDvGGG~G~  121 (239)
                      ...++||+|||+|.
T Consensus        53 ~~~~vLDl~~GsG~   66 (199)
T PRK10909         53 VDARCLDCFAGSGA   66 (199)
T ss_pred             CCCEEEEcCCCccH
Confidence            34699999999999

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=89.22  E-value=0.55  Score=35.43  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      +|.|+++||+.++.    +...++|-|+-|...
T Consensus        41 ~~~tvdelae~lnr----~rStv~rsl~~L~~~   69 (126)
T COG3355          41 GPLTVDELAEILNR----SRSTVYRSLQNLLEA   69 (126)
T ss_pred             CCcCHHHHHHHHCc----cHHHHHHHHHHHHHc
Confidence            79999999999999    999999999999886

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=89.22  E-value=0.69  Score=35.49  Aligned_cols=45  Identities=11%  Similarity=0.046  Sum_probs=35.3

Q ss_pred             CCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhh
Q 045543           12 PRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVA   60 (239)
Q Consensus        12 ~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s   60 (239)
                      ++.+.|.++||+++|+    ++..++++|+.|...     ....+|.|.+....
T Consensus        22 ~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~   71 (141)
T PRK11014         22 EGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA   71 (141)
T ss_pred             CCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence            3468899999999999    999999999999997     22235667665443

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=89.18  E-value=0.19  Score=30.93  Aligned_cols=36  Identities=8%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...|.+    +|.++.|||+.+|+    +...+.+-|+.|...
T Consensus         7 Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~   42 (47)
T PF01022_consen    7 ILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREA   42 (47)
T ss_dssp             HHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHC
Confidence            4556776    79999999999999    999999999888643

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=89.08  E-value=0.29  Score=32.26  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=30.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+..  +|.|..|||+.+|+    +...++++|..|...
T Consensus         5 Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~e   42 (62)
T PF04703_consen    5 ILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKE   42 (62)
T ss_dssp             HHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHC
T ss_pred             HHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHC
Confidence            455666632  79999999999999    999999999999886

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=88.83  E-value=0.68  Score=39.99  Aligned_cols=20  Identities=15%  Similarity=0.384  Sum_probs=17.8

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|+++|+++|.++..
T Consensus       170 ~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         170 EEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             HHHHHHHHHhcCCCcEEEEe
Confidence            58899999999999987775

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=88.70  E-value=1.1  Score=31.40  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CC-----CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GD-----DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~-----~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.+.++-|...  .  ..     ....|.+|+.+..+.
T Consensus        15 il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       15 VLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence            56677764   57999999999999    999999999999997  1  11     123577888876654

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=88.69  E-value=1.2  Score=28.12  Aligned_cols=36  Identities=11%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|..    ++.|..+|++.+++    ++..+.+.|+.|...
T Consensus         2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~   37 (66)
T smart00418        2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREA   37 (66)
T ss_pred             HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            4555663    68999999999999    999999999999986

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=88.67  E-value=0.25  Score=32.14  Aligned_cols=38  Identities=8%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|...   +|.|+.|||+.+|+    ++..+.+-|+.|...
T Consensus        14 ~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~a   51 (61)
T PF12840_consen   14 RILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEA   51 (61)
T ss_dssp             HHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            466777432   79999999999999    999999999998765

...

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=88.65  E-value=0.55  Score=37.95  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=25.9

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+++.+.+-   +   ...+++-+...+++||+++..-
T Consensus       117 d~v~aRAv~---~---l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  117 DVVTARAVA---P---LDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             EEEEEESSS---S---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cEEEeehhc---C---HHHHHHHHHHhcCCCCEEEEEc
Confidence            999988874   1   2478889999999999998864

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK04148 hypothetical protein; Provisional

Probab=88.35  E-value=1.6  Score=33.34  Aligned_cols=65  Identities=22%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC---------------------------------CccccccccC---Cc-ceeeech
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQKIL---NG-DAILMKL  140 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~~~p---~~-D~~~l~~  140 (239)
                      .+.+.++ -.+..+++|||+|.|.                                 +.+|.|++-+   ++ |+++..+
T Consensus         7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148          7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            3455555 3345789999999995                                 6678888544   23 8887654


Q ss_pred             hhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                           +..+...-+.++++..  |.-++|.
T Consensus        86 -----pp~el~~~~~~la~~~--~~~~~i~  108 (134)
T PRK04148         86 -----PPRDLQPFILELAKKI--NVPLIIK  108 (134)
T ss_pred             -----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence                 4555566666666654  4445554

>PLN02823 spermine synthase

Probab=88.31  E-value=0.76  Score=40.71  Aligned_cols=20  Identities=10%  Similarity=0.074  Sum_probs=16.0

Q ss_pred             HHHHH-HHHhhCCCCceEEEE
Q 045543          151 LSLLK-NCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~-~~~~aL~pgg~lli~  170 (239)
                      ...++ .+++.|+|||.+++.
T Consensus       199 ~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        199 KSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             HHHHHHHHHHhcCCCcEEEEe
Confidence            46777 899999999987653

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=88.05  E-value=0.67  Score=30.79  Aligned_cols=48  Identities=10%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecCh
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAP   58 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~   58 (239)
                      .|+..|.+    ++.|.++||+++|+    +...+.+-++.|...    ... +..|...+
T Consensus         4 ~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~~-~~g~~l~~   55 (69)
T TIGR00122         4 RLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLTV-GKGYRLPP   55 (69)
T ss_pred             HHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEec-CCceEecC
Confidence            35667776    68999999999999    999999999999665    223 45565543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=88.01  E-value=0.7  Score=40.17  Aligned_cols=25  Identities=16%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|+|||||.|.
T Consensus        25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~   49 (294)
T PTZ00338         25 LDKIVEKAA-IKPTDTVLEIGPGTGN   49 (294)
T ss_pred             HHHHHHhcC-CCCcCEEEEecCchHH
Confidence            456666666 6777899999999999

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=87.95  E-value=0.78  Score=35.85  Aligned_cols=51  Identities=16%  Similarity=0.094  Sum_probs=38.8

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK   61 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~   61 (239)
                      .|+.++ +++.|+++||++.++    ++..|.++|..|...     ..-..|.|.++.-.+
T Consensus        16 ~LA~~~-~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~   71 (153)
T PRK11920         16 YCAAND-GKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVRGRNGGVRLGRPAA   71 (153)
T ss_pred             HHHhCC-CCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCHH
Confidence            344332 367899999999999    999999999999886     223457788876554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=87.83  E-value=0.98  Score=40.97  Aligned_cols=15  Identities=13%  Similarity=0.073  Sum_probs=13.1

Q ss_pred             CCcceEEEeCCCCCC
Q 045543          107 EKIKQLVDVGGGCGK  121 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~  121 (239)
                      .+.++|||+|||+|.
T Consensus       219 ~~g~rVLDlfsgtG~  233 (396)
T PRK15128        219 VENKRVLNCFSYTGG  233 (396)
T ss_pred             cCCCeEEEeccCCCH
Confidence            346899999999999

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=87.79  E-value=0.49  Score=28.80  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=17.9

Q ss_pred             CCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543           15 KLSAAEIEAQMPSHNPNAAVMLDRVLR   41 (239)
Q Consensus        15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~   41 (239)
                      +.|+.+||+.+|+    +..-+.|+|+
T Consensus        21 G~si~~IA~~~gv----sr~TvyR~l~   43 (45)
T PF02796_consen   21 GMSIAEIAKQFGV----SRSTVYRYLN   43 (45)
T ss_dssp             T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHh
Confidence            4999999999999    9999988874

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=87.69  E-value=1.5  Score=32.35  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=42.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..|||+.+++    ++..+.++++-|...  .    .+   ..-.+.+|+.++.+.
T Consensus        33 iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~   96 (118)
T TIGR02337        33 ILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY   96 (118)
T ss_pred             HHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence            44556654   68999999999999    999999999999886  1    11   123689999998765

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=87.44  E-value=0.38  Score=39.02  Aligned_cols=52  Identities=12%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             Ccccccc-ccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          122 CGWKMFQ-KILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       122 ~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +.||..+ ++..+|++++-.+=--+=++..+.+++.+.+-|+-+++++=.+..
T Consensus        85 v~gDA~~y~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076          85 VVGDARDYDFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             EecccccccccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            5666665 564569998776544455677789999999999999988765543

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=87.40  E-value=0.34  Score=35.56  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=16.7

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      -|-..+. -.+....||+|||.|.
T Consensus        49 LW~~~~~-~~~~~~FVDlGCGNGL   71 (112)
T PF07757_consen   49 LWRDMYG-EQKFQGFVDLGCGNGL   71 (112)
T ss_pred             HHhcccC-CCCCCceEEccCCchH
Confidence            3444444 3467889999999999

; GO: 0008168 methyltransferase activity

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=87.36  E-value=0.52  Score=32.31  Aligned_cols=37  Identities=14%  Similarity=0.252  Sum_probs=25.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      ++..|+. |  +|.|.++||.++|.    ..+.+...|..+...
T Consensus        29 LLr~LA~-G--~PVt~~~LA~a~g~----~~e~v~~~L~~~p~t   65 (77)
T PF12324_consen   29 LLRLLAK-G--QPVTVEQLAAALGW----PVEEVRAALAAMPDT   65 (77)
T ss_dssp             HHHHHTT-T--S-B-HHHHHHHHT------HHHHHHHHHH-TTS
T ss_pred             HHHHHHc-C--CCcCHHHHHHHHCC----CHHHHHHHHHhCCCc
Confidence            3456666 4  89999999999999    898888888777665

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=87.21  E-value=4.5  Score=33.66  Aligned_cols=142  Identities=12%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--------CCCCCCeEecChhhHHHHhcCCCcccccccCchHHHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--------AGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLN   85 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--------~~~~~~~y~~t~~s~~l~~~g~~~~~~l~~~~~~~~~f~   85 (239)
                      .-.|+.+||-+.+.     .+.-++|+.+-+..        .....+.|.+.|.....+.+        .++.-....=.
T Consensus        14 ~n~t~gd~a~ern~-----~rly~~lv~~gv~Selll~~l~rn~s~n~~~~a~~~qd~ls~--------~~D~ll~~~~k   80 (271)
T KOG1709|consen   14 ENKTVGDLALERNQ-----SRLYRRLVEAGVPSELLLFALGRNESPNADGNAPYLQDYLST--------AEDTLLDSLGK   80 (271)
T ss_pred             hhCCchHHHHHccH-----HHHHHHHHHcCCchhhhhhccccccCccccccchHHHHHHhh--------hhhHHHhhccc
Confidence            35788999988886     44555555554443        12234466666666554422        11111111111


Q ss_pred             HHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Cc
Q 045543           86 TAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CG  123 (239)
Q Consensus        86 ~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~  123 (239)
                      ..|..+....+...++..  +.+.++||.||=|-|.                                          .-
T Consensus        81 ~VMm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W  158 (271)
T KOG1709|consen   81 GVMMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRW  158 (271)
T ss_pred             hhhhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecch
Confidence            234444443334444443  4778999999999998                                          11


Q ss_pred             cccccccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          124 WKMFQKILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       124 gD~~~~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .|....+|.+  |-|+.--.-.  .-++.+..-+.+.+-|||+|.+=.+..
T Consensus       159 eDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  159 EDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             HhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcCCCceEEEecC
Confidence            1222233432  4333322211  135677888899999999997765543

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=87.10  E-value=1.2  Score=29.12  Aligned_cols=48  Identities=13%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCCeEecCh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRRLQRLAP   58 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~~y~~t~   58 (239)
                      |...|..    ++.+..||++.+++    +...+.+.|+.|...      .......|..++
T Consensus        12 il~~l~~----~~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~   65 (78)
T cd00090          12 ILRLLLE----GPLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD   65 (78)
T ss_pred             HHHHHHH----CCcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence            4455565    35999999999999    999999999999875      112346677775

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=86.55  E-value=1.4  Score=33.67  Aligned_cols=47  Identities=11%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC-CCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG-DDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~-~~~~~y~~t~~s~~l~   64 (239)
                      ++.++.+||+.+++    ++..+.+.++.|...  .. ...+.|.+|+.++.+.
T Consensus        21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a   70 (142)
T PRK03902         21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIG   70 (142)
T ss_pred             CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEecCceEEECHHHHHHH
Confidence            68999999999999    999999999999987  22 2457799999986543

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.52  E-value=0.9  Score=40.97  Aligned_cols=47  Identities=6%  Similarity=0.054  Sum_probs=39.6

Q ss_pred             ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          129 KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       129 ~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      ..|. . |.+.++.+.--+++++...+++.+.++++|||||+.--...+
T Consensus       290 ~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  290 RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            4554 3 999999999767899999999999999999999998665444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=86.01  E-value=0.67  Score=39.67  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..+++.++ +.+..+|+|||||+|.
T Consensus        31 ~~~i~~~l~-~~~~~~VLEiG~G~G~   55 (272)
T PRK00274         31 LDKIVDAAG-PQPGDNVLEIGPGLGA   55 (272)
T ss_pred             HHHHHHhcC-CCCcCeEEEeCCCccH
Confidence            345666666 7777899999999999

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=85.99  E-value=1  Score=36.99  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeee
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +..++.+.+-.|++||.++.+.-+
T Consensus       162 ~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  162 TSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             chhHHHHHHhhhhcCceEEEEeeH
Confidence            457888999999999999987544

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.98  E-value=0.93  Score=36.42  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=33.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+++|..+   |++|.++||+.+|+    +...++++|..|...
T Consensus        27 Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~   63 (178)
T PRK06266         27 VLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDA   63 (178)
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            67777775   69999999999999    999999999999886

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=85.76  E-value=1.4  Score=36.05  Aligned_cols=55  Identities=11%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C---CCCCe----EecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G---DDRRL----QRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~---~~~~~----y~~t~~s~~l~   64 (239)
                      |...|...   ++.|..|||+.+|+    ++..+.+.|+.|...  .  .   ...|+    |.+|+.++.+.
T Consensus         6 IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~   71 (203)
T TIGR02702         6 ILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF   71 (203)
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence            45566654   58999999999999    999999999999886  1  1   11233    78888776543

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PHA03412 putative methyltransferase; Provisional

Probab=85.71  E-value=1  Score=37.93  Aligned_cols=13  Identities=31%  Similarity=0.475  Sum_probs=11.9

Q ss_pred             cceEEEeCCCCCC
Q 045543          109 IKQLVDVGGGCGK  121 (239)
Q Consensus       109 ~~~vlDvGGG~G~  121 (239)
                      ..+|||+|||+|.
T Consensus        50 ~grVLDlG~GSG~   62 (241)
T PHA03412         50 SGSVVDLCAGIGG   62 (241)
T ss_pred             CCEEEEccChHHH
Confidence            5799999999998

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=85.38  E-value=1.4  Score=36.60  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      ..|.++   +|+|+.|||+++|+    ++..+++-|..|...
T Consensus        18 ~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~   52 (218)
T COG2345          18 ELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAE   52 (218)
T ss_pred             HHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhC
Confidence            345554   79999999999999    999999999999986

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.04  E-value=1  Score=38.59  Aligned_cols=26  Identities=23%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      .+..|++.-+ ..+...||.||.|+|.
T Consensus        46 v~~~I~~ka~-~k~tD~VLEvGPGTGn   71 (315)
T KOG0820|consen   46 VIDQIVEKAD-LKPTDVVLEVGPGTGN   71 (315)
T ss_pred             HHHHHHhccC-CCCCCEEEEeCCCCCH
Confidence            3567777777 8889999999999999

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=84.61  E-value=1.5  Score=26.73  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.   ++.|+.+|++.+++    ++..+.+.|+.|...
T Consensus         5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~   41 (53)
T smart00420        5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQ   41 (53)
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            45566664   57999999999999    999999999999776

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.55  E-value=2.6  Score=36.69  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             EecChhhHHHHhcCCCccccccc------CchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC------
Q 045543           54 QRLAPVAKYVLHYGIGDYEHAGL------DSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK------  121 (239)
Q Consensus        54 y~~t~~s~~l~~~g~~~~~~l~~------~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~------  121 (239)
                      ..+.|.+..|+..+...|..+..      ..+..+.+ .++...++..-..+.+..+  .+.+.||-+|||-=+      
T Consensus        35 L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl~  111 (297)
T COG3315          35 LIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERM-NFLAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRLD  111 (297)
T ss_pred             ccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhh-hhHHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeecC
Confidence            67788888887433333443321      11111222 2344444433233333333  347899999999655      


Q ss_pred             ------------------------------------Ccccccc-ccCC----------c-ceeeechhhhcCChhHHHHH
Q 045543          122 ------------------------------------CGWKMFQ-KILN----------G-DAILMKLILRNWDDEHCLSL  153 (239)
Q Consensus       122 ------------------------------------~~gD~~~-~~p~----------~-D~~~l~~vlH~~~d~~~~~i  153 (239)
                                                          ++.|+++ +.|+          . =++++-.+|-.++.+...++
T Consensus       112 ~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~l  191 (297)
T COG3315         112 WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRL  191 (297)
T ss_pred             CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHH
Confidence                                                7889984 4331          1 48999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEEeeecCCCCCC---ChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeE
Q 045543          154 LKNCYEAIPGNGKIIIIDSTTVVIPEA---TPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNY  225 (239)
Q Consensus       154 L~~~~~aL~pgg~lli~d~~~~~~~~~---~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~  225 (239)
                      |++|....+||++++............   +.........++...-....+  ....|+  ..|+.+.||.....
T Consensus       192 l~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~e~--~~~l~~~g~~~~~~  262 (297)
T COG3315         192 LSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFG--DDPAEI--ETWLAERGWRSTLN  262 (297)
T ss_pred             HHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceecc--CCHHHH--HHHHHhcCEEEEec
Confidence            999999999999877643311111000   000000000011000000011  245778  99999999998765

>PRK11050 manganese transport regulator MntR; Provisional

Probab=84.48  E-value=2  Score=33.48  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..|||+.+++    ++..+.+.++.|...   .....+.+.+|+.++.+.
T Consensus        50 ~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~~~~v~LT~~G~~l~   99 (152)
T PRK11050         50 GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEKLA   99 (152)
T ss_pred             CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCceEECchHHHHH
Confidence            68999999999999    999999999999987   222345688999988775

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=84.21  E-value=0.51  Score=38.79  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=25.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |+|++-.     +..+-...++.+.+.|+|||.|++-+.+
T Consensus       123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence            8887754     4555678899999999999966554433

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.09  E-value=23  Score=29.31  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543          147 DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       147 d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~  226 (239)
                      .+++.-+..|+..-|++||.++|.=-...-+.+.+                   .++. .++-  .+-|++.||++.+..
T Consensus       156 p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~v-f~~e--v~kL~~~~f~i~e~~  213 (231)
T COG1889         156 PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEEV-FKDE--VEKLEEGGFEILEVV  213 (231)
T ss_pred             chHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHHH-HHHH--HHHHHhcCceeeEEe
Confidence            45667778889999999997776422211111111                   1111 1122  455778899999887


Q ss_pred             EcC---CceeEEEEE
Q 045543          227 SFV---CNFYIMEFI  238 (239)
Q Consensus       227 ~~~---~~~~vie~~  238 (239)
                      .+.   ..|.+|.+.
T Consensus       214 ~LePye~DH~~i~~~  228 (231)
T COG1889         214 DLEPYEKDHALIVAK  228 (231)
T ss_pred             ccCCcccceEEEEEe
Confidence            763   467777765

>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A

Probab=84.02  E-value=1.1  Score=26.63  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .+.|+++||+.+|.    ++..+.|+.+....+
T Consensus         7 ~~~~l~~iA~~~g~----S~~~f~r~Fk~~~g~   35 (42)
T PF00165_consen    7 QKLTLEDIAEQAGF----SPSYFSRLFKKETGM   35 (42)
T ss_dssp             SS--HHHHHHHHTS-----HHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHCC----CHHHHHHHHHHHHCc
Confidence            48999999999999    999999998876543

>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function

Probab=83.52  E-value=1.2  Score=33.03  Aligned_cols=53  Identities=9%  Similarity=0.068  Sum_probs=37.4

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-CCCCCCeEecChhhHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-AGDDRRLQRLAPVAKY   62 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-~~~~~~~y~~t~~s~~   62 (239)
                      .+..+|+++   ||.+..+|++.++.     +.....|.+-=... +..+.|.|.+|+.++.
T Consensus        63 ~~A~~L~~~---Gp~~~~~l~~~~~~-----~~A~~IL~~N~YGWFeRv~rGvY~LT~~G~~  116 (118)
T PF09929_consen   63 RCAAALAEH---GPSRPADLRKATGV-----PKATSILRDNHYGWFERVERGVYALTPAGRA  116 (118)
T ss_pred             HHHHHHHHc---CCCCHHHHHHhcCC-----ChHHHHHHhCcccceeeeccceEecCcchhh
Confidence            356678875   69999999999998     44443333333333 5677899999998753

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=83.47  E-value=1.8  Score=29.80  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |=|.|+.+   |..++.+||..+++    +++.++-+|..|+..
T Consensus         7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~k   43 (78)
T PRK15431          7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESM   43 (78)
T ss_pred             HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            44778886   69999999999999    999999999999997

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=83.36  E-value=2  Score=36.54  Aligned_cols=53  Identities=8%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      .=.|.+    ||.|.+||-..+++    ++..+..=++-|...  ..++++.|.+|+.++..+
T Consensus        19 LllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv   73 (260)
T COG4742          19 LLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIV   73 (260)
T ss_pred             HHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHH
Confidence            345666    79999999999999    787777777777665  556799999999998766

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=83.34  E-value=1.7  Score=28.88  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCC-CCCChhhHHHHHHHhccC--CC-CCCCeEecChhhH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSH-NPNAAVMLDRVLRRSLSS--AG-DDRRLQRLAPVAK   61 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~--~~-~~~~~y~~t~~s~   61 (239)
                      |.++|.+++  +|++..+|++.+... ....++.++|-|++|...  .. ...+.+..|+.+.
T Consensus         3 IL~~L~~~~--~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESD--KPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVGRQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccCCcccccCHHHH
Confidence            567788765  899999999999652 111468899999999876  22 2233345666544

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=83.32  E-value=1.3  Score=28.34  Aligned_cols=37  Identities=16%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.   +.+|++|||+.+++    ++.-++|=|..|...
T Consensus         5 Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~   41 (57)
T PF08220_consen    5 ILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQ   41 (57)
T ss_pred             HHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            55677775   69999999999999    999999999999887

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=82.53  E-value=1.6  Score=34.39  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+++|-.+   +.+|-+|||+.+|+    +...++++|..|...
T Consensus        19 Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~   55 (158)
T TIGR00373        19 VLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDA   55 (158)
T ss_pred             HHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            67777754   69999999999999    999999999999886

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=82.29  E-value=2.6  Score=30.77  Aligned_cols=42  Identities=17%  Similarity=0.257  Sum_probs=32.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCC-CCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSH-NPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~-~~~~~~~l~rlL~~L~~~   46 (239)
                      |++.|.+.+  ++.|++||.+++.-+ +..+...++|.|+.|+..
T Consensus         6 Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~   48 (116)
T cd07153           6 ILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEA   48 (116)
T ss_pred             HHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence            677887653  799999999998321 011888999999999997

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PRK00536 speE spermidine synthase; Provisional

Probab=82.02  E-value=2.1  Score=36.54  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|+.-..    .+   ....+.|+++|+|||.++..
T Consensus       141 DVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        141 DLIICLQE----PD---IHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence            88776532    22   36679999999999977763

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=81.64  E-value=3.6  Score=38.22  Aligned_cols=67  Identities=16%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------Ccccccccc---CCc-ceeeechhhhcCCh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------CGWKMFQKI---LNG-DAILMKLILRNWDD  147 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~---p~~-D~~~l~~vlH~~~d  147 (239)
                      +...+-|+|...|.|.                                  +-+|.-+++   |.. |++-..+++-.+.+
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~  442 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD  442 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcc
Confidence            5678999999999999                                  445665544   555 99999999887753


Q ss_pred             h-HHHHHHHHHHhhCCCCceEEEEee
Q 045543          148 E-HCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       148 ~-~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      . +...||-.+-+.|+|+|.++|-|.
T Consensus       443 rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  443 RCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             cccHHHHHHHhHhhcCCCceEEEecc
Confidence            3 345899999999999999988664

; GO: 0008168 methyltransferase activity

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=81.57  E-value=1.9  Score=36.28  Aligned_cols=95  Identities=14%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             CCCcceEEEeCCCCCC------------------------------------------Ccccccc---ccCC-c-ceeee
Q 045543          106 FEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ---KILN-G-DAILM  138 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~---~~p~-~-D~~~l  138 (239)
                      .++..+|+|..+|-|-                                          +-||.++   .++. . |++  
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI--  209 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI--  209 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE--
Confidence            3567899999999987                                          5566665   3443 2 655  


Q ss_pred             chhhhcCC------hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          139 KLILRNWD------DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       139 ~~vlH~~~------d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                         +||-|      .=-...+-+.+++.|+|||+++=.  +-.+..      ++ .-.|+             ....  .
T Consensus       210 ---iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY--vG~Pg~------ry-rG~d~-------------~~gV--a  262 (287)
T COG2521         210 ---IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY--VGNPGK------RY-RGLDL-------------PKGV--A  262 (287)
T ss_pred             ---eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE--eCCCCc------cc-ccCCh-------------hHHH--H
Confidence               45432      123467889999999999998643  222111      01 11221             1344  8


Q ss_pred             HHHhhCCCceeeEEEcC
Q 045543          213 ALTAKNGFKGVNYESFV  229 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~~  229 (239)
                      +.|+++||..++.....
T Consensus       263 ~RLr~vGF~~v~~~~~~  279 (287)
T COG2521         263 ERLRRVGFEVVKKVREA  279 (287)
T ss_pred             HHHHhcCceeeeeehhc
Confidence            88999999988776543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=81.12  E-value=1.4  Score=37.25  Aligned_cols=22  Identities=9%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhhCCCCceEEEEe
Q 045543          150 CLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ....++.++++|+|||.+++.-
T Consensus       170 t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  170 TREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHhhcCCCcEEEEEc
Confidence            3578899999999999877754

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=81.11  E-value=2.3  Score=31.71  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=38.3

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCC--CCeEecChh
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDD--RRLQRLAPV   59 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~--~~~y~~t~~   59 (239)
                      .|+..|.+.   ++.++.|||+.+++    .+..+.+-|+.|...    .+..  .-.|+.++.
T Consensus        20 ~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~   76 (117)
T PRK10141         20 GIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH   76 (117)
T ss_pred             HHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence            466777653   58999999999999    999999999999876    2221  223777664

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=80.98  E-value=1.6  Score=36.43  Aligned_cols=20  Identities=15%  Similarity=0.137  Sum_probs=17.6

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...|+.+++.|+|||.|.+.
T Consensus       144 ~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         144 PEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             HHHHHHHHHHccCCCEEEEE
Confidence            47899999999999998874

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=80.54  E-value=2.4  Score=25.41  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR   42 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~   42 (239)
                      |...|.+.   +..|..+||+++|+    ++..+.+=++.
T Consensus         8 Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~r   40 (42)
T PF13404_consen    8 ILRLLQED---GRRSYAELAEELGL----SESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHH
T ss_pred             HHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHH
Confidence            45667764   69999999999999    88776654443

...

>PRK13239 alkylmercury lyase; Provisional

Probab=80.39  E-value=2.6  Score=34.64  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|++ |  +|.|.++||+.+|.    +.+.+++.|+.|...
T Consensus        27 llr~la~-G--~pvt~~~lA~~~~~----~~~~v~~~L~~l~~~   63 (206)
T PRK13239         27 LLRLLAK-G--RPVSVTTLAAALGW----PVEEVEAVLEAMPDT   63 (206)
T ss_pred             HHHHHHc-C--CCCCHHHHHHHhCC----CHHHHHHHHHhCCCe
Confidence            4566775 4  89999999999999    999999999998876

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=80.31  E-value=1.6  Score=24.68  Aligned_cols=26  Identities=12%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             CCCHHHHHHhCCCCCCCChhhHHHHHHHhc
Q 045543           15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSL   44 (239)
Q Consensus        15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~   44 (239)
                      |+|-+|||+.+|+    .++-+.|+|.-|.
T Consensus         2 ~mtr~diA~~lG~----t~ETVSR~l~~l~   27 (32)
T PF00325_consen    2 PMTRQDIADYLGL----TRETVSRILKKLE   27 (32)
T ss_dssp             E--HHHHHHHHTS-----HHHHHHHHHHHH
T ss_pred             CcCHHHHHHHhCC----cHHHHHHHHHHHH
Confidence            5788999999999    9999999998764

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-48
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		1e-42
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		5e-40
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		3e-25
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		7e-20
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		3e-13
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		6e-11
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		6e-11
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		6e-11
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		6e-11
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		5e-10
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		1e-07
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		2e-07
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		3e-07
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		8e-06
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		2e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 157/324 (48%), Gaps = 87/324 (26%)
Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRR---------SLSSAGDDR 51
           + + EI+AKAGP A++S  EI +Q+P+ NP+A VMLDR+LR          S+ +  D +
Sbjct: 42  LDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGK 101
Query: 52  --RLQRLAPVAKYVLH----------------------------------------YGIG 69
             RL  LA VAKY++                                         YG+ 
Sbjct: 102 VQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMT 161
Query: 70  DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG--------- 120
            +E+ G D RFN+V N  M  H++I M +IL+ Y GFE +K LVDVGGG G         
Sbjct: 162 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK 221
Query: 121 -------------------------KCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLK 155
                                      G  MF  I   DA+ MK I  +W DEHCL  LK
Sbjct: 222 YPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 281
Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
           NCYEA+P NGK+I+ +    V P+++ AT+    ID+IML    G KERT++E+  +A  
Sbjct: 282 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKG 341
Query: 216 AKNGFKGVNYESFVCNFYIMEFIK 239
           A  GF+G        N YIMEF+K
Sbjct: 342 A--GFQGFKVHCNAFNTYIMEFLK 363

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 150/326 (46%), Gaps = 90/326 (27%)
Query: 1   MGVFEIMAKA-GPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR------------RSLSSA 47
           + V EIMAK+  P   +S AEI AQ+P+ NP A VMLDRVLR            R L S 
Sbjct: 44  LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPS- 102
Query: 48  GDDRRLQRLAPVAKYVLH----------------------------------------YG 67
           G   RL  LAPV K++                                          YG
Sbjct: 103 GKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYG 162
Query: 68  IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC----- 122
           +  +++ G D R N+V N  M S+++I M +IL+ Y GFE +  +VDVGGG G       
Sbjct: 163 MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIV 222
Query: 123 -----------------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSL 153
                                        G  MF  +  GDAI +K I  +W DEHCL L
Sbjct: 223 AKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKL 282
Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA 213
           LKNCY A+P +GK+I+ +      P+ + AT+     D +ML    G KERT++E+  +A
Sbjct: 283 LKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALA 342
Query: 214 LTAKNGFKGVNYESFVCNFYIMEFIK 239
           + +  GF+G    S   N Y+MEF+K
Sbjct: 343 MAS--GFRGFKVASCAFNTYVMEFLK 366

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 151/325 (46%), Gaps = 89/325 (27%)
Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSH-NPNAAVMLDRVLR--------RSLSSAGDDR 51
           +G+ EI+  AG ++ L+  E+ A++PS  NP A  M+DR+LR          L   G D 
Sbjct: 43  LGLLEILVAAGGKS-LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDG 101
Query: 52  RLQR---LAPVAKYVLH----------------------------------------YGI 68
           RL R    APV K++                                          YG+
Sbjct: 102 RLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGM 161
Query: 69  GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------ 122
             +E+ G D RFN V N  M +H+ I+  ++L+ Y GFE +  LVDVGGG G        
Sbjct: 162 SAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAA 221
Query: 123 ----------------------------GWKMFQKILNGDAILMKLILRNWDDEHCLSLL 154
                                       G  MF+++ +GD ILMK IL +W D+HC +LL
Sbjct: 222 HYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL 281
Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
           KNCY+A+P +GK++++     V PEA P+++    +D+IML    G +ER ++E+  +A 
Sbjct: 282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR 341
Query: 215 TAKNGFKGVNYESFVCNFYIMEFIK 239
            A  GF GV       N + +EF K
Sbjct: 342 GA--GFTGVKSTYIYANAWAIEFTK 364

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 95/330 (28%)
Query: 1   MGVFEIMAKAGPR-AKLSAAEIEAQMPSHNPNAAV--MLDRVLR------------RSLS 45
           + +FEI+AKA P  A +S +EI +++P+   ++ +   LDR+LR            R++ 
Sbjct: 47  LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106
Query: 46  SAGDDRRLQRLAPVAKYVLH---------------------------------------- 65
             G +R +  L+ V KY++                                         
Sbjct: 107 DGGAER-VYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKN 165
Query: 66  -YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--- 121
            +G+  YE  G D + N++ N +M+   +  M R+L+ Y GFE I  LVDVGGG G+   
Sbjct: 166 VHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLE 225
Query: 122 -------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHC 150
                                           G  MF  +  GDA+++K +  NW DE C
Sbjct: 226 LIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKC 285
Query: 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY 210
           +  L NC++A+  NGK+II++      P  +  ++  S++D +M + + G +ERT+++Y 
Sbjct: 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG-RERTEKQYE 344
Query: 211 GMALTAKNGFKGVNYESFVCN-FYIMEFIK 239
              L+  +GF          N   +MEF K
Sbjct: 345 --KLSKLSGFSKFQVACRAFNSLGVMEFYK 372

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 92/299 (30%)
Query: 1   MGVFEIMAKAGPRAKL-SAAEIEAQMPSHN-----PN---------AAVMLDRVLRRSLS 45
           + +FEI+AKA P     S +EI +++P+       PN         A+  +     R++ 
Sbjct: 47  LNLFEIIAKATPPGAFXSPSEIASKLPASTQHSDLPNRLDRXLRLLASYSVLTSTTRTIE 106
Query: 46  SAGDDRRLQRLAPVAKYVLH---------------------------------------- 65
             G +R +  L+ V KY++                                         
Sbjct: 107 DGGAER-VYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKN 165
Query: 66  -YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--- 121
            +G+  YE  G D + N++ N + +   +    R L+ Y GFE I  LVDVGGG G+   
Sbjct: 166 VHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLE 225
Query: 122 -------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHC 150
                                           G   F  +  GDA ++K +  NW DE C
Sbjct: 226 LIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKC 285
Query: 151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEY 209
           +  L NC++A+  NGK+II++      P  +  ++  S++D +  + + G +ERT+++Y
Sbjct: 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGG-RERTEKQY 343

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS-SAGDDRRLQRLAPVA 60
           G FEI+ K      L+ A  E  +   +   A M++ VL  +LS S  + ++      + 
Sbjct: 82  GFFEIITKEEESYALTVAS-ELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140
Query: 61  KYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG 120
            + +  G G ++    +  +N   N AM S + ++   + D    F+ ++ +VDVGGG G
Sbjct: 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTG 200
Query: 121 -------------KC---------------------GWKMFQKILNGDAILMKLILRNWD 146
                        KC                     G  MF  I N DA+L+K IL NW 
Sbjct: 201 TTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWT 260
Query: 147 DEHCLSLLKNCYEAIPGN---GKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS--GE 201
           D+ CL +LK C EA+  +   GK+ IID    ++ +      + + I ++M + ++    
Sbjct: 261 DKDCLRILKKCKEAVTNDGKRGKVTIID----MVIDKKKDENQVTQIKLLMDVNMACLNG 316
Query: 202 KERTKQEYYGMALTAKNGFK 221
           KER ++E+  + + A  GF+
Sbjct: 317 KERNEEEWKKLFIEA--GFQ 334

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
            G  MF+ I + DA+L+K +L +W+DE  L +LKN  EAI     +GK+IIID +     
Sbjct: 240 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 299
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
           +    T      D++ML    G KERTKQE+  +          +T  +GFK +
Sbjct: 300 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 352

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 46/237 (19%)
Query: 33  AVMLDRVLRRSLSSAGDD-RRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSH 91
           A M++ VL  +LS++  + ++      +  + ++ G   +E    +  +N + N A+ S 
Sbjct: 117 APMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASD 176
Query: 92  NSIVMNRILDYYKGFEKIKQLVDVGGG-----------------------------CGK- 121
           + ++   + D    FE ++ +VDVGGG                             CG  
Sbjct: 177 SKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSN 236
Query: 122 ----CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGN---GKIIIIDSTT 174
                G  MF  +   DA+L+K +L +W D+ C+ +LK C EA+  +   GK+I+ID   
Sbjct: 237 NLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVID--- 293
Query: 175 VVIPEATPATREASSIDIIMLMQLS--GEKERTKQEYYGMALTAKNGFKGVNYESFV 229
           +VI E      + + I ++M + +S    KER ++E+  + + A  GF+      F 
Sbjct: 294 MVINEKKDE-NQLTQIKLLMNVTISCVNGKERNEEEWKKLFIEA--GFQDYKISPFT 347

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
            G  MF+ I + DA+L+K +L +W+DE  L +LKN  EAI     +GK+IIID +     
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
           +    T      D++ML    G KERTKQE+  +          +T  +GFK +
Sbjct: 301 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 353

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 122 CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIP---GNGKIIIIDSTTVVIP 178
            G  MF+ I + DA+L+K +L +W+DE  L +LKN  EAI     +GK+IIID +     
Sbjct: 237 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 296
Query: 179 EATPATREASSIDIIMLMQLSGEKERTKQEYYGM---------ALTAKNGFKGV 223
           +    T      D++ML    G KERTKQE+  +          +T  +GFK +
Sbjct: 297 DDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSL 349

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 47/260 (18%)
Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAGDDRRLQRL---AP 58
           G FEI+ K      L+ A  E  +   +   A  ++ VL  +LS  G    L++      
Sbjct: 82  GFFEIITKEEESYALTVAS-ELLVRGSDLCLAPXVECVLDPTLS--GSYHELKKWIYEED 138
Query: 59  VAKYVLHYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGG 118
           +  + +  G G ++    +  +N   N A  S + ++   + D    F+ ++ +VDVGGG
Sbjct: 139 LTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGG 198
Query: 119 CG-------------KC---------------------GWKMFQKILNGDAILMKLILRN 144
            G             KC                     G   F  I N DA+L+K IL N
Sbjct: 199 TGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILHN 258
Query: 145 WDDEHCLSLLKNCYEAIPGN---GKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE 201
           W D+ CL +LK C EA+  +   GK+ IID       +    T+     D +    L+G 
Sbjct: 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXD-VNXACLNG- 316
Query: 202 KERTKQEYYGMALTAKNGFK 221
           KER ++E+  + + A  GF+
Sbjct: 317 KERNEEEWKKLFIEA--GFQ 334

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 114 DVGGGCGKCGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST 173
           DV G          +++ + D  ++K IL NW DE  + +L NC    P +G++++ID+ 
Sbjct: 229 DVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDA- 287
Query: 174 TVVIPEATPATREASSIDIIMLMQLSGEKERTKQE 208
             V+PE   A  ++   D   L   +G+ ERT  E
Sbjct: 288 --VVPEGNDA-HQSKEXDFXXLAARTGQ-ERTAAE 318

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 131 LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI 190
           +  D +L+  +L NW DE  L++L+ C  A+   G+++++D   V   E   A R  S++
Sbjct: 247 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---EGDGADRFFSTL 303
Query: 191 DIIMLMQLSGEKERTKQEYYGMALTAKNGF---KGVNYESFVCNFYIMEF 237
             + ++   G + RT+ E   +A +A       +     +   +F I+EF
Sbjct: 304 LDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 353

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 131 LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI 190
           +  D +L+  +L NW DE  L++L+ C  A+   G+++++D   V   E   A R  S++
Sbjct: 247 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---EGDGADRFFSTL 303
Query: 191 DIIMLMQLSGEKERTKQEYYGMALTAKNGF---KGVNYESFVCNFYIMEF 237
             +  +   G + RT+ E   +A +A       +     +   +F I+EF
Sbjct: 304 LDLRXLTFXGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 353

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 123 GWKMFQKI-LNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT 181
           G  M Q++  NGD  L+  I+ + D+   L LL NC EA+ G+G++++I+  T+   E +
Sbjct: 223 GGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER-TISASEPS 281
Query: 182 PATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF 220
           P +      D+ + M  +G + RT +E   + L  + GF
Sbjct: 282 PMS---VLWDVHLFMACAG-RHRTTEEV--VDLLGRGGF 314

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 132 NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSID 191
             DAI++  +L NW D   + +L  C EA+   G+I+I +   +          + + +D
Sbjct: 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL---HENSFNEQFTELD 305
Query: 192 IIMLMQLSGEKERTKQEYYGMALTA 216
           + ML+ L G   RT++++ G+A +A
Sbjct: 306 LRMLVFLGGAL-RTREKWDGLAASA 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	3e-56
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-55
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	2e-53
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	4e-46
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	2e-44
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-43
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	2e-43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	7e-42
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-41
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-33
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	8e-30
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	3e-28
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-23

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  182 bits (464), Expect = 3e-56
 Identities = 107/325 (32%), Positives = 149/325 (45%), Gaps = 88/325 (27%)

Query: 1   MGVFEIMAKAG-PRAKLSAAEIEAQMPSHNPNAAVMLDRVLR-----------RSLSSAG 48
           + V EIMAK+  P   +S AEI AQ+P+ NP A VMLDRVLR                +G
Sbjct: 44  LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSG 103

Query: 49  DDRRLQRLAPVAKYVLH----------------------------------------YGI 68
              RL  LAPV K++                                          YG+
Sbjct: 104 KVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGM 163

Query: 69  GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------ 122
             +++ G D R N+V N  M S+++I M +IL+ Y GFE +  +VDVGGG G        
Sbjct: 164 NIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVA 223

Query: 123 -----------------------GWK-----MFQKILNGDAILMKLILRNWDDEHCLSLL 154
                                  G +     MF  +  GDAI +K I  +W DEHCL LL
Sbjct: 224 KYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLL 283

Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
           KNCY A+P +GK+I+ +      P+ + AT+     D +ML    G KERT++E+  +A+
Sbjct: 284 KNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAM 343

Query: 215 TAKNGFKGVNYESFVCNFYIMEFIK 239
            +  GF+G    S   N Y+MEF+K
Sbjct: 344 AS--GFRGFKVASCAFNTYVMEFLK 366

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  181 bits (460), Expect = 1e-55
 Identities = 98/325 (30%), Positives = 147/325 (45%), Gaps = 89/325 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSH-NPNAAVMLDRVLR-----------RSLSSAG 48
           +G+ EI+  AG ++ L+  E+ A++PS  NP A  M+DR+LR                 G
Sbjct: 43  LGLLEILVAAGGKS-LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDG 101

Query: 49  DDRRLQRLAPVAKYVLH----------------------------------------YGI 68
              R    APV K++                                          YG+
Sbjct: 102 RLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGM 161

Query: 69  GDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------ 122
             +E+ G D RFN V N  M +H+ I+  ++L+ Y GFE +  LVDVGGG G        
Sbjct: 162 SAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAA 221

Query: 123 -----------------------GWK-----MFQKILNGDAILMKLILRNWDDEHCLSLL 154
                                  G       MF+++ +GD ILMK IL +W D+HC +LL
Sbjct: 222 HYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL 281

Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
           KNCY+A+P +GK++++     V PEA P+++    +D+IML    G +ER ++E+  +A 
Sbjct: 282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR 341

Query: 215 TAKNGFKGVNYESFVCNFYIMEFIK 239
            A  GF GV       N + +EF K
Sbjct: 342 GA--GFTGVKSTYIYANAWAIEFTK 364

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  175 bits (444), Expect = 2e-53
 Identities = 84/329 (25%), Positives = 140/329 (42%), Gaps = 93/329 (28%)

Query: 1   MGVFEIMAKAG-PRAKLSAAEIEAQMPSH--NPNAAVMLDRVLR-----------RSLSS 46
           + +FEI+AKA  P A +S +EI +++P+   + +    LDR+LR                
Sbjct: 47  LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106

Query: 47  AGDDRRLQRLAPVAKYVLH----------------------------------------- 65
            G   R+  L+ V KY++                                          
Sbjct: 107 DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNV 166

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC--- 122
           +G+  YE  G D + N++ N +M+   +  M R+L+ Y GFE I  LVDVGGG G+    
Sbjct: 167 HGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLEL 226

Query: 123 --------------------------GWK-----MFQKILNGDAILMKLILRNWDDEHCL 151
                                     G +     MF  +  GDA+++K +  NW DE C+
Sbjct: 227 IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI 286

Query: 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211
             L NC++A+  NGK+II++      P  +  ++  S++D +M + + G +ERT+++Y  
Sbjct: 287 EFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG-RERTEKQYEK 345

Query: 212 MALTAKNGFKGVNYESFVCNFY-IMEFIK 239
           ++  +  GF          N   +MEF K
Sbjct: 346 LSKLS--GFSKFQVACRAFNSLGVMEFYK 372

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  156 bits (395), Expect = 4e-46
 Identities = 62/319 (19%), Positives = 108/319 (33%), Gaps = 89/319 (27%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR-----RSLSSAGDDRRLQR 55
           M +  I+   G    LS   + + +     +    + R++R             +     
Sbjct: 39  MNIPNIIQNHGKPISLS--NLVSILQVP-SSKIGNVRRLMRYLAHNGFFEIITKEEESYA 95

Query: 56  LAPVAKYVL----------------------------------------HYGIGDYEHAG 75
           L   ++ ++                                          G G ++   
Sbjct: 96  LTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLD 155

Query: 76  LDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC------------- 122
            +  +N   N AM S + ++   + D    F+ ++ +VDVGGG G               
Sbjct: 156 KNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKC 215

Query: 123 ----------------GWK-----MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAI 161
                                   MF  I N DA+L+K IL NW D+ CL +LK C EA+
Sbjct: 216 IVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAV 275

Query: 162 PGN---GKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218
             +   GK+ IID       +    T+    +D+ M   L+G KER ++E+  + + A  
Sbjct: 276 TNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM-ACLNG-KERNEEEWKKLFIEA-- 331

Query: 219 GFKGVNYESFVCNFYIMEF 237
           GF+            ++E 
Sbjct: 332 GFQHYKISPLTGFLSLIEI 350

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  151 bits (384), Expect = 2e-44
 Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 106/330 (32%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR-----RSLSSAGDDRRLQRL 56
            + + +  AG     + A +  +  +H       L R++R       L       R  R 
Sbjct: 40  RLVDHLL-AGA---DTLAGLADRTDTH----PQALSRLVRHLTVVGVLEGGEKQGRPLRP 91

Query: 57  APVAKYVL----------------------------------------HYGIGDYEHAGL 76
             +   +                                          YG   +E    
Sbjct: 92  TRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSA 151

Query: 77  DSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC- 122
           D    +  +  M     +      D Y  +  ++ ++DVGGG G             +  
Sbjct: 152 DVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGT 210

Query: 123 ----------------------GWK-----MFQKILNG-DAILMKLILRNWDDEHCLSLL 154
                                          F+ +    D +L+  +L NW DE  L++L
Sbjct: 211 LVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTIL 270

Query: 155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL 214
           + C  A+   G+++++D     +         ++ +D+ ML  + G + RT+ E   +A 
Sbjct: 271 RGCVRALEPGGRLLVLD--RADVEGDGADRFFSTLLDLRMLTFMGG-RVRTRDEVVDLAG 327

Query: 215 TAKNGFKGV-----NYESFVCNFYIMEFIK 239
           +A  G            +   +F I+EF  
Sbjct: 328 SA--GLALASERTSGSTTLPFDFSILEFTA 355

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  149 bits (378), Expect = 1e-43
 Identities = 56/317 (17%), Positives = 98/317 (30%), Gaps = 100/317 (31%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
           GV + +   GP    + AE+ A   +     A  L RVLR  L+        D R   L 
Sbjct: 46  GVADHLV-DGP---RTPAELAAATGTD----ADALRRVLR-LLAVRDVVRESDGRF-ALT 95

Query: 58  PVAKYVLH---------------------------------------YGIGDYEHAGLDS 78
                +                                         +G     +   D+
Sbjct: 96  DKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDA 155

Query: 79  RFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KCG-- 123
               +    M + ++     +      F     + DVGGG G             +    
Sbjct: 156 EVEALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLL 214

Query: 124 ------WK------------------MFQKILNGDAILMKLILRNWDDEHCLSLLKNCYE 159
                  +                    +++ + D  ++K IL NW DE  + +L NC  
Sbjct: 215 DRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRR 274

Query: 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219
            +P +G++++ID+   V+PE      ++  +D +ML   +G +ERT  E   +   A  G
Sbjct: 275 VMPAHGRVLVIDA---VVPE-GNDAHQSKEMDFMMLAARTG-QERTAAELEPLFTAA--G 327

Query: 220 FKGVNYESFVCNFYIME 236
            +            I  
Sbjct: 328 LRLDRVVGTSSVMSIAV 344

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  149 bits (377), Expect = 2e-43
 Identities = 71/331 (21%), Positives = 116/331 (35%), Gaps = 101/331 (30%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG------------ 48
           +G+ + +   G    ++ +E+ + +  H P+   +L R LR  L+  G            
Sbjct: 33  LGIADAIHNHGK--PMTLSELASSLKLH-PSKVNILHRFLR-LLTHNGFFAKTIVKGKEG 88

Query: 49  --DDRRLQRLAPVAKY------------VLH----------------------------- 65
             ++     L P +K             V                               
Sbjct: 89  DEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECA 148

Query: 66  YGIGDYEHAGLDSRFN--EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC- 122
            G   ++    DS  +   +   AM S + +    + +  + FE ++ LVDVGGG G   
Sbjct: 149 TGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVT 208

Query: 123 ----------------------------GWK-----MFQKILNGDAILMKLILRNWDDEH 149
                                               MF+ I + DA+L+K +L +W+DE 
Sbjct: 209 KLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 268

Query: 150 CLSLLKNCYEAIPG---NGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTK 206
            L +LKN  EAI     +GK+IIID +     +    T      D++ML    G KERTK
Sbjct: 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG-KERTK 327

Query: 207 QEYYGMALTAKNGFKGVNYESFVCNFYIMEF 237
           QE+  +   A  GF             ++E 
Sbjct: 328 QEWEKLIYDA--GFSSYKITPISGFKSLIEV 356

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  146 bits (370), Expect = 2e-42
 Identities = 47/309 (15%), Positives = 91/309 (29%), Gaps = 102/309 (33%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
            + + +  AG     +   + A+  +        L R++R  L + G    D        
Sbjct: 43  RLVDHIL-AGA---RTVKALAARTDTR----PEALLRLIR-HLVAIGLLEEDAPGEFVPT 93

Query: 58  PVAKYVL----------------------------------------HYGIGDYEHAGLD 77
            V + +                                          YG   YE     
Sbjct: 94  EVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGR 153

Query: 78  SRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC-- 122
                  ++ +     +  +     Y  +  ++ ++DVGGG G                 
Sbjct: 154 PDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV 212

Query: 123 ---------------------GWK-----MFQKILNG-DAILMKLILRNWDDEHCLSLLK 155
                                         F+ +    DAI++  +L NW D   + +L 
Sbjct: 213 LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILT 272

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
            C EA+   G+I+I +              + + +D+ ML+ L G   RT++++ G+A +
Sbjct: 273 RCAEALEPGGRILIHER---DDLHENSFNEQFTELDLRMLVFLGG-ALRTREKWDGLAAS 328

Query: 216 AKNGFKGVN 224
           A  G     
Sbjct: 329 A--GLVVEE 335

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  145 bits (367), Expect = 7e-42
 Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 105/325 (32%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG-----DDRRLQRL 56
           GV E++ + GP    +A  +     +H       L R+LR  L++ G         L   
Sbjct: 62  GVPELLQE-GP---RTATALAEATGAH----EQTLRRLLR-LLATVGVFDDLGHDDLFAQ 112

Query: 57  APVAKYVL---------------------------------------HYGIGDYEHAGLD 77
             ++  +L                                         G   ++    D
Sbjct: 113 NALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHED 172

Query: 78  SRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC-- 122
            +  E+ N AM S +     ++   Y  F      VD+GGG G             +   
Sbjct: 173 PKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTL 231

Query: 123 ---------------------GWK-----MFQKILNG-DAILMKLILRNWDDEHCLSLLK 155
                                  +      F+ I +G D  L+K +L +WDD+  + +L+
Sbjct: 232 LERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILR 291

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
               A+  + ++++ID+   +I E   A+     +D+++L+ + G  ER++ E+  +   
Sbjct: 292 RIATAMKPDSRLLVIDN---LIDERPAAS--TLFVDLLLLVLVGG-AERSESEFAALLEK 345

Query: 216 AKNGFKGVN-YESFVCNFYIMEFIK 239
           +  G +             I+E  +
Sbjct: 346 S--GLRVERSLPCGAGPVRIVEIRR 368

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  142 bits (361), Expect = 2e-41
 Identities = 62/323 (19%), Positives = 103/323 (31%), Gaps = 107/323 (33%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
            V + +A AG     +AAEI +   +H    A  LDR+LR  L + G    D + +  L 
Sbjct: 29  RVADHIA-AGH---RTAAEIASAAGAH----ADSLDRLLR-HLVAVGLFTRDGQGVYGLT 79

Query: 58  PVAKY------------VLH----------------------------YGIGDYEHAGLD 77
              +             +                              YG   +E  G D
Sbjct: 80  EFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSD 139

Query: 78  SRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC-- 122
              +   +T M  H  +    I   Y  +  +  +VDVGGG G                 
Sbjct: 140 PVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTV 198

Query: 123 ---------------------GWK-----MFQKILNG-DAILMKLILRNWDDEHCLSLLK 155
                                  +      F  +  G    ++  +L +WDD   +++L+
Sbjct: 199 LDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILR 258

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
            C EA    G +++I++   V  +        + +D+ ML    G KER+  E   +A  
Sbjct: 259 RCAEAAGSGGVVLVIEA---VAGD----EHAGTGMDLRMLTYFGG-KERSLAELGELAAQ 310

Query: 216 AKNGFKGVNYESFVCNFYIMEFI 238
           A  G         +    I+E  
Sbjct: 311 A--GLAVRAAHP-ISYVSIVEMT 330

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  138 bits (350), Expect = 1e-39
 Identities = 54/321 (16%), Positives = 98/321 (30%), Gaps = 102/321 (31%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
           G+ +++   G     S   + A + S     A  + R++R  L +      D R      
Sbjct: 32  GLADLIES-GI---DSDETLAAAVGSD----AERIHRLMR-LLVAFEIFQGDTRDGYANT 82

Query: 58  PVAK-----------YVLH--------------------------YGIGDYEHAGLDSRF 80
           P +             VL                           +G   Y +       
Sbjct: 83  PTSHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDA 142

Query: 81  NEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC----- 122
                 AM +  ++  + I      F   +  VDVGGG G             +      
Sbjct: 143 GRRFLLAMKAS-NLAFHEIPRLL-DFR-GRSFVDVGGGSGELTKAILQAEPSARGVMLDR 199

Query: 123 ------------------GWK-----MFQKIL-NGDAILMKLILRNWDDEHCLSLLKNCY 158
                                     M Q++  NGD  L+  I+ + D+   L LL NC 
Sbjct: 200 EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCR 259

Query: 159 EAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218
           EA+ G+G++++I+     I   +  +  +   D+ + M  +G + RT +E   +      
Sbjct: 260 EAMAGDGRVVVIER---TISA-SEPSPMSVLWDVHLFMACAG-RHRTTEEVVDLLGRG-- 312

Query: 219 GFKGVNYESFVCNFYIMEFIK 239
           GF             ++   +
Sbjct: 313 GFAVERIVDLPMETRMIVAAR 333

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  121 bits (306), Expect = 4e-33
 Identities = 48/305 (15%), Positives = 93/305 (30%), Gaps = 99/305 (32%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
            +F  MA+ GP      A + A   S        L+ +L  +L        +D +   L 
Sbjct: 55  DLFSHMAE-GP---KDLATLAADTGSV----PPRLEMLLE-TLRQMRVINLEDGKW-SLT 104

Query: 58  PVAKYVLHYGI------------------------------------GDYEHAGLDSRFN 81
             A Y+                                         G   +  +    N
Sbjct: 105 EFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDN 164

Query: 82  EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG-------------KC------ 122
                   S+    +  +L+  K  + +K+++DVGGG G                     
Sbjct: 165 LYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 223

Query: 123 -------------GWK---------MFQKIL-NGDAILMKLILRNWDDEHCLSLLKNCYE 159
                        G           ++++     DA+L   IL + +++    + K  ++
Sbjct: 224 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFD 283

Query: 160 AIPGNGKIIIIDSTTVVIPEA-TPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN 218
           A+   G+++I+D   +VI +   P     S   +   M  S    + +  Y  +  +   
Sbjct: 284 AMRSGGRLLILD---MVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL-- 338

Query: 219 GFKGV 223
           G+K V
Sbjct: 339 GYKDV 343

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  112 bits (283), Expect = 8e-30
 Identities = 29/304 (9%), Positives = 77/304 (25%), Gaps = 99/304 (32%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
            +F++          + AE+ A               +L  +L++ G    +     R  
Sbjct: 48  KLFDLTQTG-----RTPAEVAASFGMV----EGKAAILLH-ALAALGLLTKEGDAF-RNT 96

Query: 58  PVAK-------------YVLH--------------------YGIGDYEHAGLDSRFNEVL 84
            + +              V H                               D+R  +  
Sbjct: 97  ALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAF 156

Query: 85  NTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------------------------ 120
           N AM+  +  +++ + +    F + + ++D+ GG G                        
Sbjct: 157 NDAMVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTR 215

Query: 121 --------KCGWK---------MFQKIL----NGDAILMKLILRNWDDEHCLSLLKNCYE 159
                                 +           D +++   L  +D      ++ +   
Sbjct: 216 DAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAG 275

Query: 160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG 219
            +   G ++I+      + +       ++   + M++  +  +        G+   A  G
Sbjct: 276 LVKPGGALLILTM---TMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDA--G 330

Query: 220 FKGV 223
               
Sbjct: 331 LAVG 334

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  108 bits (271), Expect = 3e-28
 Identities = 39/308 (12%), Positives = 79/308 (25%), Gaps = 105/308 (34%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG-----DDRRLQRL 56
            VF  +++ G     S+  +  +  +        +  +    L   G      +    RL
Sbjct: 30  NVFTAISQ-GI---ESSQSLAQKCQTS----ERGMRMLCD-YLVIIGFMTKQAEGY--RL 78

Query: 57  APVAKYVL-------------------HYGI-------------------GDYEHAGLDS 78
              +   L                                                 +  
Sbjct: 79  TSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWV 138

Query: 79  RFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------------------ 120
           +F + ++  M +   ++   +       E +K ++D+    G                  
Sbjct: 139 QFAKAMSPMMANPAQLIAQLVN--ENKIEPLK-VLDISASHGLFGIAVAQHNPNAEIFGV 195

Query: 121 --------------KCGWK---------MFQKIL--NGDAILMKLILRNWDDEHCLSLLK 155
                           G            F+     + D +L+   L ++D   C  LL+
Sbjct: 196 DWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLR 255

Query: 156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT 215
               A+   GK+I+ D    +         +A++  ++ML         T  EY  M   
Sbjct: 256 KIKTALAVEGKVIVFDF---IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSN 312

Query: 216 AKNGFKGV 223
           A  GF   
Sbjct: 313 A--GFSHS 318

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 38/313 (12%), Positives = 86/313 (27%), Gaps = 105/313 (33%)

Query: 2   GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG----DDRRLQRLA 57
           G+F++++        +  EI  +       A V+L      +  + G    ++ R   LA
Sbjct: 39  GIFQLLSGKREG--YTLQEISGRTGLTRYAAQVLL-----EASLTIGTILLEEDRY-VLA 90

Query: 58  PVAKYVLH------------------------------------YGIGDYEHAGL---DS 78
               ++L+                                    +G     + GL     
Sbjct: 91  KAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPE 150

Query: 79  RFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG------------------ 120
           +  +        ++     + L+        K+L+D+GG  G                  
Sbjct: 151 QVQKSWFGFDHFYSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIV 209

Query: 121 --------------KCGWK---------MFQKIL----NGDAILMKLILRNWDDEHCLSL 153
                                       +  + +      DA+ M   L  + +E  +S+
Sbjct: 210 DLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISI 269

Query: 154 LKNCYEAIPGNGKIIIIDSTTVVIPE--ATPATREASSIDIIMLMQLSGE-KERTKQEYY 210
           L    ++I  + K+ I+++   +        A+   + I +      +G  K     +  
Sbjct: 270 LTRVAQSIGKDSKVYIMET---LWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLI 326

Query: 211 GMALTAKNGFKGV 223
                A  G +  
Sbjct: 327 RCIENA--GLEVE 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.59
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.49
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.47
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.47
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.43
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.43
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.42
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.41
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.4
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.4
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.39
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.38
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.38
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.38
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.37
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.37
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.36
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.36
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.34
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.34
3ocj_A	305	Putative exported protein; structural genomics, PS	99.32
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.31
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.31
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.31
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.3
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.29
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.29
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.29
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.27
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.27
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.27
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.25
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.24
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.24
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.23
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.23
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.22
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.21
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.2
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.19
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.19
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.17
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.17
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.17
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.14
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.14
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.13
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.13
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.07
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.06
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.04
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.03
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.02
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.01
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.99
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.98
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.95
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.95
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.9
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.89
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.87
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.86
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.85
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.83
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.82
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.8
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.79
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.76
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.76
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.75
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.74
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.7
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.6
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.59
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.58
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.56
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.56
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.51
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.5
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.47
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.46
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.41
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.41
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.38
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.37
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.35
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.29
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.26
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.25
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.24
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.24
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.21
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.2
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.2
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.19
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.19
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.16
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.14
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.11
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.1
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.09
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.08
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.07
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.06
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.01
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.0
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.98
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.97
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.96
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.96
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.95
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.94
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.94
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.93
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.9
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.9
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.87
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.87
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.85
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.84
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.83
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.81
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.81
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.8
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.8
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.78
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.77
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.77
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.77
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.76
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.75
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.75
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.74
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.73
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.72
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.72
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.72
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.7
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.7
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.69
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.69
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.67
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.65
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.63
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.6
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.59
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.57
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.56
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.56
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.54
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.54
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.54
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.53
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.48
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.46
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.45
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.45
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.44
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.39
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.37
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.36
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.35
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.34
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.33
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.29
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.24
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.24
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.21
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.21
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.2
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.19
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.17
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.15
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.15
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.12
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.11
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.1
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.07
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.07
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.07
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.06
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.02
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.02
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.99
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.94
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.92
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.89
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.89
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.84
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.82
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.82
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.82
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.81
2o07_A	304	Spermidine synthase; structural genomics, structur	96.81
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.74
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.72
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.72
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.7
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.46
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.43
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.33
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.09
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	96.08
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.07
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.07
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.03
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	96.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.0
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.98
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	95.98
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.93
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.75
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	95.6
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	95.6
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	95.55
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.54
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.51
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	95.24
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.15
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.09
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.04
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.95
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	94.9
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	94.88
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	94.68
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.68
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.62
1mkm_A	249	ICLR transcriptional regulator; structural genomic	94.62
2g7u_A	257	Transcriptional regulator; ICLR family, structural	94.58
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.56
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	94.54
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	94.22
1y0u_A	96	Arsenical resistance operon repressor, putative; s	94.18
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	94.14
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.07
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	94.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	93.74
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	93.66
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	93.61
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	93.57
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	93.45
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	92.96
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	92.65
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.52
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	92.13
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.06
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	92.05
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	91.91
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	91.7
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	91.57
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	91.48
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	91.44
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	91.42
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	91.39
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	91.29
3jth_A	98	Transcription activator HLYU; transcription factor	91.17
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	91.15
3df8_A	111	Possible HXLR family transcriptional factor; APC89	91.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.91
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	90.87
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	90.67
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	90.57
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	90.5
1ylf_A	149	RRF2 family protein; structural genomics, transcri	90.17
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	90.17
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	90.13
3k69_A	162	Putative transcription regulator; putative transcr	90.05
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	90.0
2obp_A	96	Putative DNA-binding protein; structural genomics,	89.9
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	89.57
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	89.57
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	89.29
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	89.1
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	89.05
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	88.61
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	88.57
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	88.38
3bja_A	139	Transcriptional regulator, MARR family, putative;	88.28
1yyv_A	131	Putative transcriptional regulator; reductive meth	88.25
3r0a_A	123	Putative transcriptional regulator; structural gen	88.14
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	88.12
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	88.01
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	87.95
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	87.94
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	87.92
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	87.82
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	87.77
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	87.62
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	87.52
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	87.52
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	87.51
2nnn_A	140	Probable transcriptional regulator; structural gen	87.45
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	87.42
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	87.26
2pg4_A	95	Uncharacterized protein; structural genomics, join	87.24
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	87.17
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	87.16
2eth_A	154	Transcriptional regulator, putative, MAR family; M	87.01
2kko_A	108	Possible transcriptional regulatory protein (possi	86.98
1xd7_A	145	YWNA; structural genomics, protein structure initi	86.97
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	86.84
2gxg_A	146	146AA long hypothetical transcriptional regulator;	86.79
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	86.5
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	86.07
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	85.98
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	85.8
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	85.78
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	85.7
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	85.67
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	85.41
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	85.37
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	85.03
3khk_A	544	Type I restriction-modification system methylation	84.71
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	84.59
2h09_A	155	Transcriptional regulator MNTR; transcription regu	83.96
2pex_A	153	Transcriptional regulator OHRR; transcription regu	83.89
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	83.83
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	83.68
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	83.67
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	83.64
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	83.62
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	83.6
3s2w_A	159	Transcriptional regulator, MARR family; structural	83.59
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	83.51
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	83.5
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	83.4
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	83.28
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	83.15
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	82.87
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	82.68
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	82.63
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	82.48
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	82.24
1sfx_A	109	Conserved hypothetical protein AF2008; structural	81.99
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	81.94
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	81.93
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	81.82
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	81.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.67
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	81.51
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	81.34
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	80.99
1bja_A	95	Transcription regulatory protein MOTA; activation	80.82
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	80.59
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	80.47
3nqo_A	189	MARR-family transcriptional regulator; structural	80.08

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=2.1e-48  Score=343.64  Aligned_cols=226  Identities=20%  Similarity=0.304  Sum_probs=202.3

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhhHHHH----------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVAKYVL----------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s~~l~----------   64 (239)
                      |||||+|++.+  +|+|++|||+++|+    +++.+.|+||+|++.  .    +...+.|+||+.++.|+          
T Consensus        31 Lglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~~  104 (353)
T 4a6d_A           31 LGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQCS  104 (353)
T ss_dssp             HTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCHH
T ss_pred             cCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHHH
Confidence            68999999854  79999999999999    999999999999997  1    33456899999997665          


Q ss_pred             -----------------------------hcC---CCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceE
Q 045543           65 -----------------------------HYG---IGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQL  112 (239)
Q Consensus        65 -----------------------------~~g---~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v  112 (239)
                                                   ++|   .++|+++.++|+....|+++|...+...++.+++.++ |++..+|
T Consensus       105 ~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v  183 (353)
T 4a6d_A          105 MLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLM  183 (353)
T ss_dssp             HHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEE
T ss_pred             HHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeE
Confidence                                         223   3467888899999999999999998888899999999 9999999


Q ss_pred             EEeCCCCCC----------------------------------------Ccccccc-ccCCcceeeechhhhcCChhHHH
Q 045543          113 VDVGGGCGK----------------------------------------CGWKMFQ-KILNGDAILMKLILRNWDDEHCL  151 (239)
Q Consensus       113 lDvGGG~G~----------------------------------------~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~  151 (239)
                      ||||||+|.                                        ++||||+ +.|.+|+|++++|||+|+|++|+
T Consensus       184 ~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~  263 (353)
T 4a6d_A          184 CDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCS  263 (353)
T ss_dssp             EEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHH
T ss_pred             EeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHH
Confidence            999999999                                        7899998 45557999999999999999999


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN  231 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~  231 (239)
                      +||++|+++|+|||+|+|+|.+++++...+   .....+|++||+++ +|++||.+||  ++||++|||+.++++++++.
T Consensus       264 ~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert~~e~--~~ll~~AGf~~v~v~~~~~~  337 (353)
T 4a6d_A          264 HLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERTPTHY--HMLLSSAGFRDFQFKKTGAI  337 (353)
T ss_dssp             HHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCCHHHH--HHHHHHHTCEEEEEECCSSS
T ss_pred             HHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCCHHHH--HHHHHHCCCceEEEEEcCCc
Confidence            999999999999999999999998876654   34567899999987 9999999999  99999999999999999999


Q ss_pred             eeEEEEEC
Q 045543          232 FYIMEFIK  239 (239)
Q Consensus       232 ~~vie~~k  239 (239)
                      +++|+|+|
T Consensus       338 ~~~i~ArK  345 (353)
T 4a6d_A          338 YDAILARK  345 (353)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEe
Confidence            99999998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=4e-43  Score=311.04  Aligned_cols=236  Identities=42%  Similarity=0.775  Sum_probs=201.2

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCC-CCCCChhhHHHHHHHhccC---CCC-----C---CCeEecChhhHHHH----
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPS-HNPNAAVMLDRVLRRSLSS---AGD-----D---RRLQRLAPVAKYVL----   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~-~~~~~~~~l~rlL~~L~~~---~~~-----~---~~~y~~t~~s~~l~----   64 (239)
                      |||||+|+++| ++|+|++|||+++|+ +++.++..|+||||+|++.   .+.     +   +++|++|+.++.|+    
T Consensus        43 Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~  121 (364)
T 3p9c_A           43 LGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNED  121 (364)
T ss_dssp             HTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTT
T ss_pred             CChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCC
Confidence            68999999864 369999999999995 3121233999999999998   222     1   47899999987554    


Q ss_pred             ------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC
Q 045543           65 ------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK  108 (239)
Q Consensus        65 ------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  108 (239)
                                                          ++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  201 (364)
T 3p9c_A          122 GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG  201 (364)
T ss_dssp             SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             CCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccC
Confidence                                                34567889999999999999999999888777889999977888


Q ss_pred             cceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHH
Q 045543          109 IKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLL  154 (239)
Q Consensus       109 ~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL  154 (239)
                      ..+|||||||+|.                                  +.+|||+++|++|+|+++++||+|+|+++.++|
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L  281 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLL  281 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHH
Confidence            9999999999999                                  678999988877999999999999999999999


Q ss_pred             HHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeE
Q 045543          155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYI  234 (239)
Q Consensus       155 ~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~v  234 (239)
                      ++++++|+|||+|+|+|.+.++.+..+........+|+.|++.+.+|++||.+||  +++|+++||+.++++++++..++
T Consensus       282 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~--~~ll~~AGF~~v~~~~~~~~~~v  359 (364)
T 3p9c_A          282 KNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF--QALARGAGFTGVKSTYIYANAWA  359 (364)
T ss_dssp             HHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH--HHHHHHTTCCEEEEEEEETTEEE
T ss_pred             HHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH--HHHHHHCCCceEEEEEcCCceEE
Confidence            9999999999999999999887655432333446789999854449999999999  99999999999999999999999


Q ss_pred             EEEEC
Q 045543          235 MEFIK  239 (239)
Q Consensus       235 ie~~k  239 (239)
                      ||++|
T Consensus       360 ie~~k  364 (364)
T 3p9c_A          360 IEFTK  364 (364)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=7e-43  Score=309.85  Aligned_cols=237  Identities=46%  Similarity=0.769  Sum_probs=203.1

Q ss_pred             CccchHhHhc-CCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC----C----CCeEecChhhHHHH----
Q 045543            1 MGVFEIMAKA-GPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD----D----RRLQRLAPVAKYVL----   64 (239)
Q Consensus         1 Lgifd~L~~~-g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~----~----~~~y~~t~~s~~l~----   64 (239)
                      |||||+|++. |+++|+|++|||+++|..++.+++.|.|+||+|++.   .+.    +    +++|++|+.++.|+    
T Consensus        44 Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~  123 (368)
T 3reo_A           44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNED  123 (368)
T ss_dssp             TTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTT
T ss_pred             CCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCC
Confidence            7999999986 655789999999999832121234999999999998   221    1    37899999998765    


Q ss_pred             ------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC
Q 045543           65 ------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK  108 (239)
Q Consensus        65 ------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  108 (239)
                                                          ++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  203 (368)
T 3reo_A          124 GVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEG  203 (368)
T ss_dssp             SCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTT
T ss_pred             CCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccC
Confidence                                                34667889999999999999999999888778889999877888


Q ss_pred             cceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHH
Q 045543          109 IKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLL  154 (239)
Q Consensus       109 ~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL  154 (239)
                      ..+|||||||+|.                                  +.+|+++++|++|+|+++++||+|+|+++.++|
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l  283 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLL  283 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHH
Confidence            8999999999999                                  678999888877999999999999999999999


Q ss_pred             HHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeE
Q 045543          155 KNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYI  234 (239)
Q Consensus       155 ~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~v  234 (239)
                      ++++++|+|||+|+|+|.+.++....+........+|+.|+..+.+|++||.+||  +++|+++||+.+++.+..+..++
T Consensus       284 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~--~~ll~~AGF~~v~~~~~~~~~~v  361 (368)
T 3reo_A          284 KNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF--QALAMASGFRGFKVASCAFNTYV  361 (368)
T ss_dssp             HHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH--HHHHHHTTCCEEEEEEEETTEEE
T ss_pred             HHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH--HHHHHHCCCeeeEEEEeCCCcEE
Confidence            9999999999999999999887655443334456789999875458999999999  99999999999999999999999


Q ss_pred             EEEEC
Q 045543          235 MEFIK  239 (239)
Q Consensus       235 ie~~k  239 (239)
                      ||++|
T Consensus       362 ie~~k  366 (368)
T 3reo_A          362 MEFLK  366 (368)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=6.4e-41  Score=294.93  Aligned_cols=223  Identities=22%  Similarity=0.289  Sum_probs=198.5

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL--------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~--------------   64 (239)
                      |||||+|++    +|+|++|||+++|+    +++.++|+||+|++.  .+.++++|++|+.++.|+              
T Consensus        45 lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~  116 (348)
T 3lst_A           45 VGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMF  116 (348)
T ss_dssp             HTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECTTTGGGSTTSSSCSHHHHHHH
T ss_pred             cCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEecCCEEecCHHHHHHhcCCCccHHHHHHHh
Confidence            689999987    79999999999999    999999999999998  222789999999876543              


Q ss_pred             -------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCC
Q 045543           65 -------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGC  119 (239)
Q Consensus        65 -------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~  119 (239)
                                               .+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+|||||||+
T Consensus       117 ~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~  195 (348)
T 3lst_A          117 TDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGR  195 (348)
T ss_dssp             TSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTT
T ss_pred             cCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCcc
Confidence                                     2356789999999999999999999998888889999999 99999999999999


Q ss_pred             CC---------------------------------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhh
Q 045543          120 GK---------------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEA  160 (239)
Q Consensus       120 G~---------------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~a  160 (239)
                      |.                                       +.+|+++++|..|+|+++++||+|+|+++.++|++++++
T Consensus       196 G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~  275 (348)
T 3lst_A          196 GGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRV  275 (348)
T ss_dssp             SHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHh
Confidence            99                                       567888888844999999999999999999999999999


Q ss_pred             CCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          161 IPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       161 L~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      |+|||+|+|.|.+.++...+    .....+|+.|+... +|++||.+||  .++|+++||+++++++..+..++||++|
T Consensus       276 LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          276 MPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAEL--EPLFTAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             CCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHHH--HHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             cCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHHH--HHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence            99999999999988776443    23467899998875 9999999999  9999999999999999778899999986

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=2.3e-40  Score=293.67  Aligned_cols=222  Identities=23%  Similarity=0.359  Sum_probs=197.9

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCe-EecChhhHHHH------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRL-QRLAPVAKYVL------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~-y~~t~~s~~l~------------   64 (239)
                      |||||+|++    +|+|++|||+++|+    +++.++|+||+|++.   .+.++++ |++|+.++.|.            
T Consensus        61 lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~  132 (369)
T 3gwz_A           61 LGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDAR  132 (369)
T ss_dssp             HTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHHH
T ss_pred             CChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHHH
Confidence            689999996    79999999999999    999999999999998   3446788 99999886443            


Q ss_pred             ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543           65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG  117 (239)
Q Consensus        65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG  117 (239)
                                                 .+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||||
T Consensus       133 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~  211 (369)
T 3gwz_A          133 FQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGG  211 (369)
T ss_dssp             HHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETC
T ss_pred             HcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCC
Confidence                                       2355789999999999999999999988877889999998 999999999999


Q ss_pred             CCCC-----------------------------------------CccccccccCC-cceeeechhhhcCChhHHHHHHH
Q 045543          118 GCGK-----------------------------------------CGWKMFQKILN-GDAILMKLILRNWDDEHCLSLLK  155 (239)
Q Consensus       118 G~G~-----------------------------------------~~gD~~~~~p~-~D~~~l~~vlH~~~d~~~~~iL~  155 (239)
                      |+|.                                         +.+|+++++|. .|+|+++++||+|+|+++.++|+
T Consensus       212 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~  291 (369)
T 3gwz_A          212 GRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILR  291 (369)
T ss_dssp             TTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             CccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHH
Confidence            9999                                         56888888885 49999999999999999999999


Q ss_pred             HHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE-cCCceeE
Q 045543          156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES-FVCNFYI  234 (239)
Q Consensus       156 ~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~-~~~~~~v  234 (239)
                      +++++|+|||+|+|+|.+.++...+    . ...+|+.|+... +|++||.+||  +++|+++||+++++++ ..+..++
T Consensus       292 ~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~sv  363 (369)
T 3gwz_A          292 RIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERSESEF--AALLEKSGLRVERSLPCGAGPVRI  363 (369)
T ss_dssp             HHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBCHHHH--HHHHHTTTEEEEEEEECSSSSEEE
T ss_pred             HHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCCHHHH--HHHHHHCCCeEEEEEECCCCCcEE
Confidence            9999999999999999998776432    2 467899998876 9999999999  9999999999999999 5788999


Q ss_pred             EEEEC
Q 045543          235 MEFIK  239 (239)
Q Consensus       235 ie~~k  239 (239)
                      ||++|
T Consensus       364 ie~~~  368 (369)
T 3gwz_A          364 VEIRR  368 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=2.4e-40  Score=289.20  Aligned_cols=219  Identities=26%  Similarity=0.413  Sum_probs=192.1

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL-------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~-------------   64 (239)
                      |||||+|++    +|+|++|||+++|+    +++.++|+||+|++.   .+.+++.|++|+.++.|.             
T Consensus        28 lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~   99 (332)
T 3i53_A           28 LRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDM   99 (332)
T ss_dssp             HTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHCT
T ss_pred             cChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHHH
Confidence            689999987    79999999999999    999999999999998   445578999999886554             


Q ss_pred             ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543           65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG  117 (239)
Q Consensus        65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG  117 (239)
                                                 .+|.++|+++.++|+..+.|+.+|...+....+.+++.++ |++..+||||||
T Consensus       100 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~  178 (332)
T 3i53_A          100 NSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGG  178 (332)
T ss_dssp             TSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETC
T ss_pred             cCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCC
Confidence                                       2244567888889999999999999887776778888898 999999999999


Q ss_pred             CCCC-----------------------------------------CccccccccCC-cceeeechhhhcCChhHHHHHHH
Q 045543          118 GCGK-----------------------------------------CGWKMFQKILN-GDAILMKLILRNWDDEHCLSLLK  155 (239)
Q Consensus       118 G~G~-----------------------------------------~~gD~~~~~p~-~D~~~l~~vlH~~~d~~~~~iL~  155 (239)
                      |+|.                                         +.+|+++++|. .|+|+++++||+|+|+++.++|+
T Consensus       179 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~  258 (332)
T 3i53_A          179 GSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILR  258 (332)
T ss_dssp             TTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHH
Confidence            9999                                         56788888885 59999999999999999999999


Q ss_pred             HHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEE
Q 045543          156 NCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIM  235 (239)
Q Consensus       156 ~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vi  235 (239)
                      +++++|+|||+|+|+|.+.++. .+      ...+|+.|+... +|++||.+||  .++|+++||+++++++.++ .++|
T Consensus       259 ~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~-~~vi  327 (332)
T 3i53_A          259 RCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAEL--GELAAQAGLAVRAAHPISY-VSIV  327 (332)
T ss_dssp             HHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHHH--HHHHHHTTEEEEEEEECSS-SEEE
T ss_pred             HHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHHH--HHHHHHCCCEEEEEEECCC-cEEE
Confidence            9999999999999999988775 22      257889888875 9999999999  9999999999999999988 9999


Q ss_pred             EEEC
Q 045543          236 EFIK  239 (239)
Q Consensus       236 e~~k  239 (239)
                      |++|
T Consensus       328 e~r~  331 (332)
T 3i53_A          328 EMTA  331 (332)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9985

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7.6e-39  Score=279.61  Aligned_cols=221  Identities=23%  Similarity=0.373  Sum_probs=193.5

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL-------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~-------------   64 (239)
                      |||||+|++    +|+|++|||+++|+    +++.+.|+||+|++.   .+.+++.|++|+.++.|+             
T Consensus        31 lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~  102 (334)
T 2ip2_A           31 LGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFY  102 (334)
T ss_dssp             TTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTSSSTTCSHHHHHHH
T ss_pred             cCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHhCCCccHHHHHHHh
Confidence            799999987    79999999999999    999999999999998   444568999998764332             


Q ss_pred             ------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCC
Q 045543           65 ------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCG  120 (239)
Q Consensus        65 ------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G  120 (239)
                                              ++|.++|+++.++|+..+.|+++| ..+....+.+++.++ |++ .+|||||||+|
T Consensus       103 ~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G  179 (334)
T 2ip2_A          103 GEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSG  179 (334)
T ss_dssp             TTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTC
T ss_pred             cCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCch
Confidence                                    235567888899999999999999 887777788999998 888 99999999999


Q ss_pred             C-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHHHHH
Q 045543          121 K-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLKNCY  158 (239)
Q Consensus       121 ~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~  158 (239)
                      .                                         +.+|+++++|.. |+|++++++|+|+++++.++|++++
T Consensus       180 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~  259 (334)
T 2ip2_A          180 ELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCR  259 (334)
T ss_dssp             HHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHH
Confidence            8                                         467888877765 9999999999999999999999999


Q ss_pred             hhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543          159 EAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI  238 (239)
Q Consensus       159 ~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~  238 (239)
                      ++|+|||+|+|.|.+.++...+    .....+|+.|+..+ +|++||.+||  .++++++||+++++++.++..++||++
T Consensus       260 ~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~~i~~~  332 (334)
T 2ip2_A          260 EAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTTEEV--VDLLGRGGFAVERIVDLPMETRMIVAA  332 (334)
T ss_dssp             HHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBHHHH--HHHHHHTTEEEEEEEEETTTEEEEEEE
T ss_pred             HhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCHHHH--HHHHHHCCCceeEEEECCCCCEEEEEE
Confidence            9999999999999988765432    23567889888766 8999999999  999999999999999988889999998


Q ss_pred             C
Q 045543          239 K  239 (239)
Q Consensus       239 k  239 (239)
                      |
T Consensus       333 ~  333 (334)
T 2ip2_A          333 R  333 (334)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=1.4e-38  Score=280.98  Aligned_cols=232  Identities=30%  Similarity=0.467  Sum_probs=194.1

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC-----C-----CCeEecChhhHHHH---
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD-----D-----RRLQRLAPVAKYVL---   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~-----~-----~~~y~~t~~s~~l~---   64 (239)
                      |||||+|++.|  +|+|++|||+++|+ ++.+++.++|+||+|++.   .+.     +     ++.|++|+.++.|+   
T Consensus        33 lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~  109 (358)
T 1zg3_A           33 LGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK  109 (358)
T ss_dssp             HTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTS
T ss_pred             CChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCC
Confidence            58999999843  59999999999999 333488999999999998   333     2     47999999876432   


Q ss_pred             ---------------------------h-----------cCCCcccccccCchHHH--HHHHHHHhcccccHHHHHhhcc
Q 045543           65 ---------------------------H-----------YGIGDYEHAGLDSRFNE--VLNTAMLSHNSIVMNRILDYYK  104 (239)
Q Consensus        65 ---------------------------~-----------~g~~~~~~l~~~~~~~~--~f~~~m~~~~~~~~~~~~~~~~  104 (239)
                                                 .           +|.++|+++.++|+..+  .|+.+|...+.... .+++.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~  188 (358)
T 1zg3_A          110 PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENK  188 (358)
T ss_dssp             TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTH
T ss_pred             CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcc
Confidence                                       1           12356888888999999  99999998877666 8888882


Q ss_pred             -CCCCcceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhH
Q 045543          105 -GFEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEH  149 (239)
Q Consensus       105 -~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~  149 (239)
                       .|++..+|||||||+|.                                  +.+|+++++|..|+|+++++||+|+|++
T Consensus       189 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~  268 (358)
T 1zg3_A          189 RVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ  268 (358)
T ss_dssp             HHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred             hhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHH
Confidence             28888999999999998                                  4678888777679999999999999999


Q ss_pred             HHHHHHHHHhhCCC---CceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543          150 CLSLLKNCYEAIPG---NGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       150 ~~~iL~~~~~aL~p---gg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~  226 (239)
                      +.++|++++++|+|   ||+|+|+|.+.++....+........+|+.|+... +|++||.+||  .++|+++||++++++
T Consensus       269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~t~~e~--~~ll~~aGf~~~~~~  345 (358)
T 1zg3_A          269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEW--EKLIYDAGFSSYKIT  345 (358)
T ss_dssp             HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCEEHHHH--HHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCCCCCHHHH--HHHHHHcCCCeeEEE
Confidence            99999999999999   99999999998776543211134567899888865 8999999999  999999999999999


Q ss_pred             EcCCceeEEEEEC
Q 045543          227 SFVCNFYIMEFIK  239 (239)
Q Consensus       227 ~~~~~~~vie~~k  239 (239)
                      +.++..++||++|
T Consensus       346 ~~~~~~~vie~~~  358 (358)
T 1zg3_A          346 PISGFKSLIEVYP  358 (358)
T ss_dssp             EETTTEEEEEEEC
T ss_pred             ecCCCcEEEEEeC
Confidence            9888889999987

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=1.1e-37  Score=276.50  Aligned_cols=236  Identities=36%  Similarity=0.660  Sum_probs=189.4

Q ss_pred             CccchHhHhcC-CCCCCCHHHHHHhCCCC--CCCChhhHHHHHHHhccC---CCC----C----CCeEecChhhHHHH--
Q 045543            1 MGVFEIMAKAG-PRAKLSAAEIEAQMPSH--NPNAAVMLDRVLRRSLSS---AGD----D----RRLQRLAPVAKYVL--   64 (239)
Q Consensus         1 Lgifd~L~~~g-~~~~~t~~eLA~~~g~~--~~~~~~~l~rlL~~L~~~---~~~----~----~~~y~~t~~s~~l~--   64 (239)
                      |||||+|++.| +++++|++|||+++|++  ++.+++.+.|+||+|++.   .+.    .    ++.|++|+.++.|+  
T Consensus        47 lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~  126 (372)
T 1fp1_D           47 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD  126 (372)
T ss_dssp             TTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTT
T ss_pred             CChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCC
Confidence            79999999743 11229999999999981  344688999999999998   232    2    36999998764332  


Q ss_pred             ---------------------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccC
Q 045543           65 ---------------------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKG  105 (239)
Q Consensus        65 ---------------------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~  105 (239)
                                                             ++|.++|+++.++|+..+.|+++|...+....+.+++.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~  206 (372)
T 1fp1_D          127 ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG  206 (372)
T ss_dssp             CTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence                                                   11345688888999999999999998887777889999876


Q ss_pred             CCCcceEEEeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHH
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCL  151 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~  151 (239)
                      |++..+|||||||+|.                                  +.+|+++++|..|+|+++++||+|+|+++.
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~  286 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI  286 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence            8888999999999999                                  467888877778999999999999999999


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc-CC
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF-VC  230 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~-~~  230 (239)
                      ++|++++++|+|||+|+|.|.+.++....+...+....+|+.|+... +|++||.+||  .++|+++||+++++++. .+
T Consensus       287 ~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~  363 (372)
T 1fp1_D          287 EFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQY--EKLSKLSGFSKFQVACRAFN  363 (372)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHH--HHHHHHTTCSEEEEEEEETT
T ss_pred             HHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHHHH--HHHHHHCCCceEEEEEcCCC
Confidence            99999999999999999999998776543322224567888888754 8999999999  99999999999999885 34


Q ss_pred             ceeEEEEEC
Q 045543          231 NFYIMEFIK  239 (239)
Q Consensus       231 ~~~vie~~k  239 (239)
                      ..+|||++|
T Consensus       364 ~~~vie~~~  372 (372)
T 1fp1_D          364 SLGVMEFYK  372 (372)
T ss_dssp             TEEEEEEEC
T ss_pred             CeEEEEEeC
Confidence            269999987

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=1.9e-37  Score=273.05  Aligned_cols=230  Identities=27%  Similarity=0.444  Sum_probs=192.0

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC--CCCeEecChhhHHHH-----------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD--DRRLQRLAPVAKYVL-----------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~--~~~~y~~t~~s~~l~-----------   64 (239)
                      ||||++|++.+  +|+|++|||+++|+ ++.+++.+.|+||+|++.   .+.  +++.|++|+.++.|+           
T Consensus        39 lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~  115 (352)
T 1fp2_A           39 MNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMV  115 (352)
T ss_dssp             TTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCCHHHH
T ss_pred             CChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccHHHHH
Confidence            79999999753  59999999999999 222377899999999998   333  368999999765432           


Q ss_pred             -----------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhc--cCCCCcceEE
Q 045543           65 -----------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYY--KGFEKIKQLV  113 (239)
Q Consensus        65 -----------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vl  113 (239)
                                                   ++|.++|+++.++|+..+.|+.+|...+....+. ++.|  + |++..+||
T Consensus       116 ~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vl  193 (352)
T 1fp2_A          116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIV  193 (352)
T ss_dssp             HHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEE
T ss_pred             HHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEE
Confidence                                         1234678888899999999999999988776666 7788  5 88889999


Q ss_pred             EeCCCCCC----------------------------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHh
Q 045543          114 DVGGGCGK----------------------------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYE  159 (239)
Q Consensus       114 DvGGG~G~----------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~  159 (239)
                      |||||+|.                                  +.+|+++++|..|+|+++++||+|+|+++.++|+++++
T Consensus       194 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~  273 (352)
T 1fp2_A          194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKE  273 (352)
T ss_dssp             EETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             EeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHH
Confidence            99999999                                  45788887776799999999999999999999999999


Q ss_pred             hCCC---CceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEE
Q 045543          160 AIPG---NGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIME  236 (239)
Q Consensus       160 aL~p---gg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie  236 (239)
                      +|+|   ||+|+|.|.+.++....+........+|+.|+. + +|++||.+||  .++|+++||+.+++++.++..+|||
T Consensus       274 ~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~vie  349 (352)
T 1fp2_A          274 AVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW--KKLFIEAGFQHYKISPLTGFLSLIE  349 (352)
T ss_dssp             HHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH--HHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             hCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH--HHHHHHCCCCeeEEEecCCCcEEEE
Confidence            9999   999999999887654321111234578888887 5 6999999999  9999999999999999888889999


Q ss_pred             EEC
Q 045543          237 FIK  239 (239)
Q Consensus       237 ~~k  239 (239)
                      ++|
T Consensus       350 ~~~  352 (352)
T 1fp2_A          350 IYP  352 (352)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            987

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=8.4e-37  Score=270.23  Aligned_cols=226  Identities=17%  Similarity=0.222  Sum_probs=180.1

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL--------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~--------------   64 (239)
                      |||||+|++++  +|+|++|||+++|+    +++.++|+||+|++.  .+.++++|++|+.++.|+              
T Consensus        38 lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~  111 (363)
T 3dp7_A           38 FGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEFNHD  111 (363)
T ss_dssp             TTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEETTEEEECHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEecCCEEecccchHHhhCCCcccchheeecH
Confidence            79999999843  79999999999999    999999999999998  334589999999997765              


Q ss_pred             ----------------------hcC--CCcccccccCchHHHH----HHHHHHhcccccHHHHHhhccCCCCcceEEEeC
Q 045543           65 ----------------------HYG--IGDYEHAGLDSRFNEV----LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVG  116 (239)
Q Consensus        65 ----------------------~~g--~~~~~~l~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG  116 (239)
                                            ++|  .++|+++.++|+..+.    |+.+|...+   ...+++.+. ..+..+|||||
T Consensus       112 ~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~~~~-~~~~~~vlDvG  187 (363)
T 3dp7_A          112 VNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALEIVF-SHHPKRLLDIG  187 (363)
T ss_dssp             TTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHHHHG-GGCCSEEEEES
T ss_pred             HhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHHHhc-ccCCCEEEEeC
Confidence                                  234  4788999999987663    666665433   234555555 46779999999


Q ss_pred             CCCCC-----------------------------------------Cccccccc---cCCc-ceeeechhhhcCChhHHH
Q 045543          117 GGCGK-----------------------------------------CGWKMFQK---ILNG-DAILMKLILRNWDDEHCL  151 (239)
Q Consensus       117 GG~G~-----------------------------------------~~gD~~~~---~p~~-D~~~l~~vlH~~~d~~~~  151 (239)
                      ||+|.                                         +.+|++++   +|.. |+|+++++||+|+|+++.
T Consensus       188 ~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~  267 (363)
T 3dp7_A          188 GNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVI  267 (363)
T ss_dssp             CTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHH
T ss_pred             CCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHH
Confidence            99999                                         56899884   6754 999999999999999999


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecCCCCCCCh-hhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATP-ATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-  229 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~-~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-  229 (239)
                      ++|++++++|+|||+|+|+|.+.++....+. ........++.|+... ++++||.+||  .++|+++||+++++++.. 
T Consensus       268 ~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~AGf~~v~~~~~~g  344 (363)
T 3dp7_A          268 SILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANG-NSKMFHSDDL--IRCIENAGLEVEEIQDNIG  344 (363)
T ss_dssp             HHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCS-SCCSCCHHHH--HHHHHTTTEEESCCCCCBT
T ss_pred             HHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCC-CCcccCHHHH--HHHHHHcCCeEEEEEeCCC
Confidence            9999999999999999999998876543210 0011123444455443 6889999999  999999999999998765 


Q ss_pred             CceeEEEEEC
Q 045543          230 CNFYIMEFIK  239 (239)
Q Consensus       230 ~~~~vie~~k  239 (239)
                      ..+++||++|
T Consensus       345 ~~~svi~~~~  354 (363)
T 3dp7_A          345 LGHSILQCRL  354 (363)
T ss_dssp             TTBEEEEEEE
T ss_pred             CCceEEEEee
Confidence            5699999875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=5.8e-35  Score=256.75  Aligned_cols=221  Identities=11%  Similarity=0.143  Sum_probs=182.2

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHh-------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLH-------------   65 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~-------------   65 (239)
                      |||||+|++     |+|++|||+++|+    +++.++|+||+|++.  .+..+++|++|+.++.++.             
T Consensus        47 lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~  117 (352)
T 3mcz_A           47 DKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVEH  117 (352)
T ss_dssp             TTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHSTTCTTCCHHHHHH
T ss_pred             CChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEecCCeeecCHHHHhhccCCChhhHHHHHHH
Confidence            799999963     9999999999999    999999999999998  3334588999999986651             


Q ss_pred             ----------------cCCCc-cc---ccccCchHHHHHHHHHHhcccccHHHHHhhccCCCC-cceEEEeCCCCCC---
Q 045543           66 ----------------YGIGD-YE---HAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEK-IKQLVDVGGGCGK---  121 (239)
Q Consensus        66 ----------------~g~~~-~~---~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vlDvGGG~G~---  121 (239)
                                      .|.+. |+   ++..+|+..+.|..+|...... ...+++.++ +.+ ..+|||||||+|.   
T Consensus       118 ~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~  195 (352)
T 3mcz_A          118 QYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLA  195 (352)
T ss_dssp             HHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHH
Confidence                            12111 11   2356788889999999873322 347888998 887 8999999999998   


Q ss_pred             --------------------------------------Cccccccc---cCCc-ceeeechhhhcCChhHHHHHHHHHHh
Q 045543          122 --------------------------------------CGWKMFQK---ILNG-DAILMKLILRNWDDEHCLSLLKNCYE  159 (239)
Q Consensus       122 --------------------------------------~~gD~~~~---~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~  159 (239)
                                                            +.+|+++.   .|.+ |+|+++++||+|+|+++.++|+++++
T Consensus       196 ~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~  275 (352)
T 3mcz_A          196 QVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAG  275 (352)
T ss_dssp             HHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHH
Confidence                                                  56788884   5554 99999999999999999999999999


Q ss_pred             hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      +|+|||+|+|+|.+.++....+   .....+|+.|+..+.+|++||.+||  +++|+++||++++..  .+..++++++|
T Consensus       276 ~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~--~~ll~~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          276 LVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWI--AGVVRDAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             TEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHH--HHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred             HcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHH--HHHHHHCCCceeeec--cCceEEEEEec
Confidence            9999999999999988765443   2356789999876668999999999  999999999999843  35688999886

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.7e-35  Score=260.79  Aligned_cols=223  Identities=19%  Similarity=0.344  Sum_probs=190.8

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH-------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL-------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~-------------   64 (239)
                      ||||+.|++    +|+|++|||+++|+    +++.+.|+||+|++.   .+..+++|++|+.++.|.             
T Consensus        42 l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~~  113 (360)
T 1tw3_A           42 LRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDL  113 (360)
T ss_dssp             TTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTCT
T ss_pred             hCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHHH
Confidence            689999976    79999999999999    999999999999998   344678999998765432             


Q ss_pred             ---------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCC
Q 045543           65 ---------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGG  117 (239)
Q Consensus        65 ---------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGG  117 (239)
                                                 .+|.++|+++..+|+....|..+|...+....+.+++.++ +++..+||||||
T Consensus       114 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~  192 (360)
T 1tw3_A          114 TQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGG  192 (360)
T ss_dssp             TSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETC
T ss_pred             hcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCC
Confidence                                       1234567777778888899999999888877888999998 888899999999


Q ss_pred             CCCC-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHH
Q 045543          118 GCGK-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLK  155 (239)
Q Consensus       118 G~G~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~  155 (239)
                      |+|.                                         +.+|+++++|.. |+|+++++||+|+++++.++|+
T Consensus       193 G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~  272 (360)
T 1tw3_A          193 GKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILT  272 (360)
T ss_dssp             TTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             cCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHH
Confidence            9998                                         456787777875 9999999999999999999999


Q ss_pred             HHHhhCCCCceEEEEeee-cCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc---
Q 045543          156 NCYEAIPGNGKIIIIDST-TVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN---  231 (239)
Q Consensus       156 ~~~~aL~pgg~lli~d~~-~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~---  231 (239)
                      +++++|+|||+++|.|.+ .++....    .....+|+.|+... +|+.||.++|  .++|+++||+++++++.++.   
T Consensus       273 ~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~--~~ll~~aGf~~~~~~~~~~~~~~  345 (360)
T 1tw3_A          273 RCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKW--DGLAASAGLVVEEVRQLPSPTIP  345 (360)
T ss_dssp             HHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHH--HHHHHHTTEEEEEEEEEECSSSS
T ss_pred             HHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHH--HHHHHHCCCeEEEEEeCCCCccc
Confidence            999999999999999998 6654332    23457788888765 8999999999  99999999999999888665   


Q ss_pred             --eeEEEEEC
Q 045543          232 --FYIMEFIK  239 (239)
Q Consensus       232 --~~vie~~k  239 (239)
                        .++||++|
T Consensus       346 ~~~~~i~~~~  355 (360)
T 1tw3_A          346 YDLSLLVLAP  355 (360)
T ss_dssp             CEEEEEEEEE
T ss_pred             CccEEEEEEe
Confidence              89999986

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=2e-35  Score=261.51  Aligned_cols=223  Identities=20%  Similarity=0.387  Sum_probs=186.1

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCC--eEecChhhHHHH-----------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRR--LQRLAPVAKYVL-----------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~--~y~~t~~s~~l~-----------   64 (239)
                      ||||++|++    +|+|++|||+++|+    +++.+.|+||+|++.   .+..++  .|++|+.++.|.           
T Consensus        39 l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~  110 (374)
T 1qzz_A           39 LRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWL  110 (374)
T ss_dssp             TTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHHH
T ss_pred             cChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHHH
Confidence            699999976    79999999999999    999999999999998   343566  899998765442           


Q ss_pred             -----------------------------hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEe
Q 045543           65 -----------------------------HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDV  115 (239)
Q Consensus        65 -----------------------------~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDv  115 (239)
                                                   .+|.++|+++..+|+..+.|+.+|...+....+.+++.++ +++..+||||
T Consensus       111 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDv  189 (374)
T 1qzz_A          111 DLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDV  189 (374)
T ss_dssp             CTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEE
T ss_pred             HHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEE
Confidence                                         1234567777778888999999999887777788999998 8889999999


Q ss_pred             CCCCCC-----------------------------------------CccccccccCCc-ceeeechhhhcCChhHHHHH
Q 045543          116 GGGCGK-----------------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSL  153 (239)
Q Consensus       116 GGG~G~-----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~i  153 (239)
                      |||+|.                                         +.+|+++++|.. |+|++++++|+|+++++.++
T Consensus       190 G~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~  269 (374)
T 1qzz_A          190 GGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTI  269 (374)
T ss_dssp             TCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHH
Confidence            999998                                         457787778875 99999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEEee--ecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543          154 LKNCYEAIPGNGKIIIIDS--TTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN  231 (239)
Q Consensus       154 L~~~~~aL~pgg~lli~d~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~  231 (239)
                      |++++++|+|||+|+|.|.  +.++...+    .....+|+.|+... +|+.+|.++|  .++|+++||++++++..++.
T Consensus       270 l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~--~~ll~~aGf~~~~~~~~~~~  342 (374)
T 1qzz_A          270 LRGCVRALEPGGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM-GGRVRTRDEV--VDLAGSAGLALASERTSGST  342 (374)
T ss_dssp             HHHHHHHEEEEEEEEEEECCH-------H----HHHHHHHHHHHHHH-SCCCCCHHHH--HHHHHTTTEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCcEEEEEechhhcCCCCCc----chhhhcchHHHHhC-CCcCCCHHHH--HHHHHHCCCceEEEEECCCC
Confidence            9999999999999999998  77654321    33467888888765 8999999999  99999999999999988776


Q ss_pred             e-----eEEEEEC
Q 045543          232 F-----YIMEFIK  239 (239)
Q Consensus       232 ~-----~vie~~k  239 (239)
                      .     ++||++|
T Consensus       343 ~~~~~~~~i~~~~  355 (374)
T 1qzz_A          343 TLPFDFSILEFTA  355 (374)
T ss_dssp             SCSSCEEEEEEEE
T ss_pred             cccCCcEEEEEEE
Confidence            6     9999975

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=2.9e-34  Score=253.26  Aligned_cols=220  Identities=16%  Similarity=0.246  Sum_probs=183.6

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH--------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL--------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~--------------   64 (239)
                      |||||.|++    +|+|++|||+++|+    +++.+.|+||+|++.  .+..+++|++|+.+..++              
T Consensus        54 lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~  125 (359)
T 1x19_A           54 LDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPV  125 (359)
T ss_dssp             HTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHSSSSCSBTTBCCHHH
T ss_pred             cCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEeeCCeEecCHHHHHHhcCCCCCccccHHHH
Confidence            589999997    69999999999999    999999999999998  333457999998643221              


Q ss_pred             -------------------hcCCCcccccccCch---HHHHHHHHHHhccc-ccHHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           65 -------------------HYGIGDYEHAGLDSR---FNEVLNTAMLSHNS-IVMNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        65 -------------------~~g~~~~~~l~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                                         ..|.+ |+++.++|+   ..+.|..+|...+. ..++.+++.++ +++..+|||||||+|.
T Consensus       126 ~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~  203 (359)
T 1x19_A          126 AKAMAFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGD  203 (359)
T ss_dssp             HHHHHHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccH
Confidence                               01233 888888999   99999999999988 77889999998 9999999999999998


Q ss_pred             -----------------------------------------Ccccccc-ccCCcceeeechhhhcCChhHHHHHHHHHHh
Q 045543          122 -----------------------------------------CGWKMFQ-KILNGDAILMKLILRNWDDEHCLSLLKNCYE  159 (239)
Q Consensus       122 -----------------------------------------~~gD~~~-~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~  159 (239)
                                                               +.+|+++ ++|.+|+|+++++||+|+|+++.++|+++++
T Consensus       204 ~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~  283 (359)
T 1x19_A          204 ISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFD  283 (359)
T ss_dssp             HHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHH
Confidence                                                     4567776 5555699999999999999999999999999


Q ss_pred             hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccc----cChhhccHHHHHhhCCCceeeEEEcCCceeEE
Q 045543          160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE----RTKQEYYGMALTAKNGFKGVNYESFVCNFYIM  235 (239)
Q Consensus       160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~----rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vi  235 (239)
                      +|+|||+|+|+|...++.. .+.   ....+  .|+..+.+|++    ||.+||  .++|+++||+++++++.+ ..++|
T Consensus       284 ~L~pgG~l~i~e~~~~~~~-~~~---~~~~~--~~~~~~~~g~~~~~~~t~~e~--~~ll~~aGf~~v~~~~~~-~~~vi  354 (359)
T 1x19_A          284 AMRSGGRLLILDMVIDDPE-NPN---FDYLS--HYILGAGMPFSVLGFKEQARY--KEILESLGYKDVTMVRKY-DHLLV  354 (359)
T ss_dssp             TCCTTCEEEEEEECCCCTT-SCC---HHHHH--HHGGGGGSSCCCCCCCCGGGH--HHHHHHHTCEEEEEEEET-TEEEE
T ss_pred             hcCCCCEEEEEecccCCCC-Cch---HHHHH--HHHHhcCCCCcccCCCCHHHH--HHHHHHCCCceEEEEecC-CceEE
Confidence            9999999999999887652 221   22223  45544435888    999999  999999999999999887 78999


Q ss_pred             EEEC
Q 045543          236 EFIK  239 (239)
Q Consensus       236 e~~k  239 (239)
                      +++|
T Consensus       355 ~a~k  358 (359)
T 1x19_A          355 QAVK  358 (359)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9987

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=3.1e-34  Score=250.05  Aligned_cols=224  Identities=15%  Similarity=0.152  Sum_probs=190.3

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhH-HHH-------------
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAK-YVL-------------   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~-~l~-------------   64 (239)
                      ||||++|++    +|+|++|||+++|+    +++.+.|+||+|++.  .+.++++|++|+.++ .|.             
T Consensus        29 l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~  100 (335)
T 2r3s_A           29 LNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIEF  100 (335)
T ss_dssp             TTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHTCTTSTTCCGGGHHH
T ss_pred             cChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEecCCEEecCHHHHHHhccCCcHHHHHHHHH
Confidence            799999997    69999999999999    999999999999998  344679999999983 332             


Q ss_pred             -----------------hcCC-Cc--ccccccCchHHHHHHHHHHhcccccHHHHHhhccCC--CCcceEEEeCCCCCC-
Q 045543           65 -----------------HYGI-GD--YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGF--EKIKQLVDVGGGCGK-  121 (239)
Q Consensus        65 -----------------~~g~-~~--~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vlDvGGG~G~-  121 (239)
                                       ..|. .+  |+++.++|+..+.|..+|.......+..+++.++ +  .+..+|||||||+|. 
T Consensus       101 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~  179 (335)
T 2r3s_A          101 LLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLF  179 (335)
T ss_dssp             HTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHH
T ss_pred             hcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHH
Confidence                             0122 12  6777788999999999999888777788999998 7  888999999999998 


Q ss_pred             ----------------------------------------Ccccccc-ccCCc-ceeeechhhhcCChhHHHHHHHHHHh
Q 045543          122 ----------------------------------------CGWKMFQ-KILNG-DAILMKLILRNWDDEHCLSLLKNCYE  159 (239)
Q Consensus       122 ----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~  159 (239)
                                                              +.+|+++ ++|.+ |+|++++++|+|+++++.++|+++++
T Consensus       180 ~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~  259 (335)
T 2r3s_A          180 GIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKT  259 (335)
T ss_dssp             HHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHH
Confidence                                                    4567776 56665 99999999999999999999999999


Q ss_pred             hCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543          160 AIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI  238 (239)
Q Consensus       160 aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~  238 (239)
                      +|+|||+++|+|...++....+   .....+|+.|+..+++++.+|.++|  .++++++||+.+++.+.++..++|+++
T Consensus       260 ~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~--~~ll~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          260 ALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEY--ESMFSNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             HEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHH--HHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred             hCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHH--HHHHHHCCCCeeeEEECCCCceeEEEe
Confidence            9999999999999887654333   2356788888876658899999999  999999999999999988778888875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.59  E-value=8.4e-15  Score=123.64  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             CCCcceEEEeCCCCCC--------------------------------------------Ccccccc-ccCCcceeeech
Q 045543          106 FEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQ-KILNGDAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~-~~p~~D~~~l~~  140 (239)
                      .++..+|||||||+|.                                            +.+|+.+ ++++.|++++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            4667899999999996                                            3456655 444569999999


Q ss_pred             hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-hhhhhHHHhh-ccC------------CccccCh
Q 045543          141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-ASSIDIIMLM-QLS------------GEKERTK  206 (239)
Q Consensus       141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-~~~~dl~ml~-~~~------------~g~~rt~  206 (239)
                      +||.+++++...+|++++++|+|||++++.|....+++...  ... ....+..... ...            --...|.
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~  225 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV  225 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred             eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence            99999999888999999999999999999998776543210  000 0011110000 000            0123578


Q ss_pred             hhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          207 QEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       207 ~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      +++  .++|++|||+.++++--..++..+.|+|
T Consensus       226 ~~~--~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          226 ETH--KARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             HHH--HHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHH--HHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence            899  9999999999998865444555666776

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=3.7e-14  Score=116.60  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=95.7

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-ce
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      ..+++.++...+..+|||||||+|.                                       +.+|+.+ +.+.. |+
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            3444444423456899999999998                                       3456655 33333 99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh-hhhhHH--------H----hhccCCcc
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA-SSIDII--------M----LMQLSGEK  202 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~-~~~dl~--------m----l~~~~~g~  202 (239)
                      |++..++|++++++...+|+++++.|+|||++++.+...++.....  .... .+....        .    +.......
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSKLDK  190 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----CCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhccccc
Confidence            9999999999999888999999999999999999998765532110  0000 000000        0    00001234


Q ss_pred             ccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          203 ERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       203 ~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      .+|.+++  .++|++|||+.+++......++++-.+|
T Consensus       191 ~~~~~~~--~~ll~~aGF~~v~~~~~~~~~~~~~~~~  225 (234)
T 3dtn_A          191 DIEMNQQ--LNWLKEAGFRDVSCIYKYYQFAVMFGRK  225 (234)
T ss_dssp             CCBHHHH--HHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred             ccCHHHH--HHHHHHcCCCceeeeeeecceeEEEEEe
Confidence            5688999  9999999999999988777777776654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.49  E-value=2.6e-13  Score=110.43  Aligned_cols=133  Identities=15%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------Ccccccc-ccCCc-ceeeec
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------CGWKMFQ-KILNG-DAILMK  139 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~-~~p~~-D~~~l~  139 (239)
                      ..+++.+. ..+..+|||||||+|.                                   +.+|+.+ +.+.. |+|++.
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  113 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVST  113 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEE
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEEC
Confidence            45666666 5677899999999998                                   3456655 34433 999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHh------h-ccCCccccChhhccHH
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIML------M-QLSGEKERTKQEYYGM  212 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml------~-~~~~g~~rt~~e~~~~  212 (239)
                      +++|++++.+...+|+++++.|+|||++++.+...+....      ..........      . ........|.+++  .
T Consensus       114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  185 (220)
T 3hnr_A          114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQTEYYTRIPVM--Q  185 (220)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHHHSCCCBHHHH--H
T ss_pred             cchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcchhhcCCHHHH--H
Confidence            9999999998888999999999999999999876543211      0011100000      0 0000123478999  9


Q ss_pred             HHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          213 ALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      ++|+++||+++.+. ......++++.|
T Consensus       186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~  211 (220)
T 3hnr_A          186 TIFENNGFHVTFTR-LNHFVWVMEATK  211 (220)
T ss_dssp             HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred             HHHHHCCCEEEEee-ccceEEEEeehh
Confidence            99999999876554 446677887764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=7.8e-15  Score=119.81  Aligned_cols=163  Identities=11%  Similarity=0.057  Sum_probs=99.3

Q ss_pred             cccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------
Q 045543           70 DYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------  121 (239)
Q Consensus        70 ~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------  121 (239)
                      +++|+...|.+...+...+........+.+.+.+   ....+|||||||+|.                            
T Consensus         3 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   79 (227)
T 1ve3_A            3 FKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM---KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY   79 (227)
T ss_dssp             CHHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSC---CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             chhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhc---CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            3444444444333333333322222233444433   336799999999998                            


Q ss_pred             ----------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhh
Q 045543          122 ----------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREAS  188 (239)
Q Consensus       122 ----------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~  188 (239)
                                +.+|+.+ +++. . |+|++..++|.+..++...+|+++++.|+|||++++.+...+...... ......
T Consensus        80 ~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~  158 (227)
T 1ve3_A           80 AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVV  158 (227)
T ss_dssp             HHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC----
T ss_pred             HHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-Hhhhhc
Confidence                      3456665 4453 3 999999998888888889999999999999999999876532211000 000000


Q ss_pred             hhhHHHhhccCC--------------------ccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          189 SIDIIMLMQLSG--------------------EKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       189 ~~dl~ml~~~~~--------------------g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      ..+..+....+.                    ...++ .+|  .++|+++||+.+++..+....++|++.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~--~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          159 GQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG-KTG--VELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             -----CCEEEEETTTTEEEEEC-----CCEEEEECCC-HHH--HHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             ccceeecccccCccccEEEEEeccchhhheeehhhhc-hHH--HHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence            000000000000                    11112 478  9999999999999999887788999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.47  E-value=4.8e-13  Score=108.72  Aligned_cols=122  Identities=14%  Similarity=0.128  Sum_probs=94.8

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~  132 (239)
                      ...+++.++ +.+..+|||||||+|.                                          +.+|+.+ +++.
T Consensus        26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            456777777 7888899999999998                                          3345554 4444


Q ss_pred             -c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhcc
Q 045543          133 -G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY  210 (239)
Q Consensus       133 -~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~  210 (239)
                       . |+|++..++|++++.  ..+|+++++.|+|||++++.+.........+      .           ....++.+++ 
T Consensus       105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~-----------~~~~~~~~~~-  164 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP------P-----------PEEVYSEWEV-  164 (219)
T ss_dssp             SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------C-----------GGGSCCHHHH-
T ss_pred             CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC------c-----------hhcccCHHHH-
Confidence             3 999999999999765  5899999999999999999987655442211      0           1123588999 


Q ss_pred             HHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          211 GMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                       .++++++||+++++.........+.++|
T Consensus       165 -~~~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          165 -GLILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             -HHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             -HHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence             9999999999999988877777777765

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.43  E-value=1e-13  Score=116.11  Aligned_cols=131  Identities=13%  Similarity=0.039  Sum_probs=88.9

Q ss_pred             CCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeeech-hhhcCCh-h
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNWDD-E  148 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~~d-~  148 (239)
                      ++..+|||||||+|.                                  +.+|+.+ +.+.. |+|++.. +||++++ +
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~  128 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQA  128 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHH
Confidence            456899999999998                                  4566665 34444 9999998 9999964 6


Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhh--------------------hhhhhhhHHHhhccCC--------
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPAT--------------------REASSIDIIMLMQLSG--------  200 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~--------------------~~~~~~dl~ml~~~~~--------  200 (239)
                      +...+|+++++.|+|||+++|.+...++.-.+....                    .....+++.++....+        
T Consensus       129 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (263)
T 3pfg_A          129 ELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEE  208 (263)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEE
Confidence            778999999999999999999755444322110000                    0000111122111111        


Q ss_pred             ---ccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          201 ---EKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       201 ---g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                         -+.+|.+||  .++|+++||+++++........++.++|
T Consensus       209 ~~~~~~~t~~el--~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          209 SHRITLFTREQY--ERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEECCCHHHH--HHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEeecHHHH--HHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence               234589999  9999999999998877666677777765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.43  E-value=4.1e-13  Score=108.71  Aligned_cols=127  Identities=14%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------CccccccccCC-c-ceeee
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILN-G-DAILM  138 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~-~-D~~~l  138 (239)
                      ...+++.+..+....+|||||||+|.                                   +.+|+.+..+. . |+|++
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  113 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF  113 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence            44566666545666799999999999                                   34555554343 3 99999


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhh-hhhHHHhhccCCc-------cccChhhcc
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREAS-SIDIIMLMQLSGE-------KERTKQEYY  210 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~-~~dl~ml~~~~~g-------~~rt~~e~~  210 (239)
                      .+++|++++++...+|+++++.|+|||++++.+...+......   .+.. .... +....+.+       +..+.+++ 
T Consensus       114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  188 (218)
T 3ou2_A          114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ---QDDSEPEVA-VRRTLQDGRSFRIVKVFRSPAEL-  188 (218)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC---------------CE-EEEECTTSCEEEEECCCCCHHHH-
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccch---hhhcccccc-eeeecCCcchhhHhhcCCCHHHH-
Confidence            9999999998889999999999999999999987653221100   0000 0000 00001112       13488999 


Q ss_pred             HHHHHhhCCCceeeEEEc
Q 045543          211 GMALTAKNGFKGVNYESF  228 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~~~~  228 (239)
                       .++|+++||++......
T Consensus       189 -~~~l~~aGf~v~~~~~~  205 (218)
T 3ou2_A          189 -TERLTALGWSCSVDEVH  205 (218)
T ss_dssp             -HHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHCCCEEEeeecc
Confidence             99999999995544433

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.42  E-value=7.2e-13  Score=110.74  Aligned_cols=134  Identities=11%  Similarity=0.232  Sum_probs=90.5

Q ss_pred             HHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccc
Q 045543           84 LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGW  124 (239)
Q Consensus        84 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~g  124 (239)
                      |.......+......+++.++ ..+..+|||||||+|.                                       +.+
T Consensus        14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~   92 (260)
T 1vl5_A           14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG   92 (260)
T ss_dssp             ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe
Confidence            333344444445677888887 7788999999999998                                       234


Q ss_pred             cccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCC
Q 045543          125 KMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSG  200 (239)
Q Consensus       125 D~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~  200 (239)
                      |+.+ ++|. . |+|++..++|+++|.  ..+|++++++|+|||+|++.+...++.+   .   ...++.. ..+.....
T Consensus        93 d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~  164 (260)
T 1vl5_A           93 DAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSH  164 (260)
T ss_dssp             CC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTC
T ss_pred             cHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccc
Confidence            5544 5554 3 999999999999876  4899999999999999999988765431   1   1111211 11111113


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ...++.++|  .++|+++||+++++...
T Consensus       165 ~~~~~~~~~--~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          165 HRAWKKSDW--LKMLEEAGFELEELHCF  190 (260)
T ss_dssp             CCCCBHHHH--HHHHHHHTCEEEEEEEE
T ss_pred             cCCCCHHHH--HHHHHHCCCeEEEEEEe
Confidence            456788999  99999999998876543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.41  E-value=1.7e-12  Score=107.24  Aligned_cols=121  Identities=20%  Similarity=0.334  Sum_probs=86.2

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc---ccCC-c-ceeeec
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ---KILN-G-DAILMK  139 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~---~~p~-~-D~~~l~  139 (239)
                      ...+...++.+.+..+|||||||+|.                               +.+|+.+   +++. . |+|++.
T Consensus        29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEEC
Confidence            33444445535667899999999998                               2445544   4454 3 999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      +++|++++++...+|+++++.|+|||++++.......     .    ....+.  ..........+.+++  .++++++|
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~----~~~~~~--~~~~~~~~~~~~~~l--~~~l~~aG  175 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----L----YSLINF--YIDPTHKKPVHPETL--KFILEYLG  175 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----H----HHHHHH--TTSTTCCSCCCHHHH--HHHHHHHT
T ss_pred             CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----h----HHHHHH--hcCccccccCCHHHH--HHHHHHCC
Confidence            9999999988899999999999999999987653211     0    111111  111113355688999  99999999


Q ss_pred             CceeeEEEcC
Q 045543          220 FKGVNYESFV  229 (239)
Q Consensus       220 f~~~~~~~~~  229 (239)
                      |+++++....
T Consensus       176 f~~~~~~~~~  185 (240)
T 3dli_A          176 FRDVKIEFFE  185 (240)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEEEEec
Confidence            9998887653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.40  E-value=2e-13  Score=110.43  Aligned_cols=149  Identities=12%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhccccc----HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------
Q 045543           81 NEVLNTAMLSHNSIV----MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------  121 (239)
Q Consensus        81 ~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------  121 (239)
                      ...|...........    ...+++.++ .++. +|||||||+|.                                   
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~   91 (219)
T 3dlc_A           14 AKNMDEISKTLFAPIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL   91 (219)
T ss_dssp             HHHHHHHHHTTTTTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc
Confidence            444555554443332    345555665 5554 99999999998                                   


Q ss_pred             ------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhh-hhhh
Q 045543          122 ------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREA-SSID  191 (239)
Q Consensus       122 ------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~-~~~d  191 (239)
                            +.+|+.+ +++. . |+|++.+++|++++.  ..+|+++++.|+|||++++.+...+............ ....
T Consensus        92 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  169 (219)
T 3dlc_A           92 NDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPD  169 (219)
T ss_dssp             TTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTT
T ss_pred             cCceEEEEcCHHHCCCCcccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHH
Confidence                  3456655 5554 3 999999999999665  5899999999999999999875443211000000000 0000


Q ss_pred             HHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEE
Q 045543          192 IIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIME  236 (239)
Q Consensus       192 l~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie  236 (239)
                      ....... ....++.++|  .++|+++||+.+++........++.
T Consensus       170 ~~~~~~~-~~~~~~~~~~--~~~l~~aGf~~v~~~~~~~~~~~~~  211 (219)
T 3dlc_A          170 WKEFNRK-NISQENVERF--QNVLDEIGISSYEIILGDEGFWIII  211 (219)
T ss_dssp             HHHHHHH-HSSHHHHHHH--HHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred             HHhhhhh-ccccCCHHHH--HHHHHHcCCCeEEEEecCCceEEEE
Confidence            0000000 2344578999  9999999999999987766655543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.40  E-value=1.2e-12  Score=109.10  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=90.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-D  134 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D  134 (239)
                      ...+++.++ ..+..+|||||||+|.                                      +.+|+.+ ++|. . |
T Consensus        44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence            345666666 7778899999999998                                      2345554 4543 3 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|++.+++|++++++...+|+++++.|+|||++++.+...+......      ..+.-.. ... +...++.+++  .++
T Consensus       123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~-~~~-~~~~~~~~~~--~~~  192 (266)
T 3ujc_A          123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD------DEFKEYV-KQR-KYTLITVEEY--ADI  192 (266)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC------HHHHHHH-HHH-TCCCCCHHHH--HHH
T ss_pred             EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch------HHHHHHH-hcC-CCCCCCHHHH--HHH
Confidence            99999999999888889999999999999999999998766521111      1111111 111 3456799999  999


Q ss_pred             HhhCCCceeeEEEc
Q 045543          215 TAKNGFKGVNYESF  228 (239)
Q Consensus       215 l~~aGf~~~~~~~~  228 (239)
                      ++++||+++++...
T Consensus       193 l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          193 LTACNFKNVVSKDL  206 (266)
T ss_dssp             HHHTTCEEEEEEEC
T ss_pred             HHHcCCeEEEEEeC
Confidence            99999999988765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.39  E-value=1.3e-12  Score=109.69  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=90.6

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-  132 (239)
                      ...+++.++ ..+..+|||||||+|.                                         +.+|+.+ +++. 
T Consensus        50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            356667777 7788899999999998                                         2356555 4554 


Q ss_pred             c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      . |+|++..++|++++.  ..+|+++++.|+|||+++|.+..........    ....++..... +..+..++.+++  
T Consensus       129 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~--  199 (273)
T 3bus_A          129 SFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEY--  199 (273)
T ss_dssp             CEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHH--
T ss_pred             CccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHH--
Confidence            3 999999999999876  5899999999999999999998765432210    11112211111 225677899999  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      .++++++||+++++...
T Consensus       200 ~~~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          200 ESDVRQAELVVTSTVDI  216 (273)
T ss_dssp             HHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHcCCeEEEEEEC
Confidence            99999999999988765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.38  E-value=1e-12  Score=109.04  Aligned_cols=116  Identities=17%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ce
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DA  135 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~  135 (239)
                      ..+++.++ ..+..+|||||||+|.                                      +.+|+.+ +++. . |+
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence            45566665 5677899999999998                                      2345554 4443 3 99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      |++.++||++++++...+|+++++.|+|||+++|.+.......         ...+.     ......++.++|  .++|
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~--~~~l  225 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHY--KRLF  225 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHH--HHHH
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHH--HHHH
Confidence            9999999999998899999999999999999999987544321         11111     113445799999  9999


Q ss_pred             hhCCCceeeEEEcC
Q 045543          216 AKNGFKGVNYESFV  229 (239)
Q Consensus       216 ~~aGf~~~~~~~~~  229 (239)
                      +++||+++++....
T Consensus       226 ~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          226 NESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHTCCEEEEEECT
T ss_pred             HHCCCEEEEeeecC
Confidence            99999999887653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.38  E-value=1.6e-12  Score=110.66  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             HHHHHhhc----cCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-c
Q 045543           96 MNRILDYY----KGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-K  129 (239)
Q Consensus        96 ~~~~~~~~----~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~  129 (239)
                      ...+++.+    + +.+..+|||||||+|.                                         +.+|+.+ +
T Consensus        67 ~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  145 (297)
T 2o57_A           67 DEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  145 (297)
T ss_dssp             HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence            34566666    4 7778899999999998                                         3456665 5


Q ss_pred             cCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChh
Q 045543          130 ILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQ  207 (239)
Q Consensus       130 ~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~  207 (239)
                      ++. . |+|++..++|++++  ...+|+++++.|+|||++++.+...+......   .....++..   .  -....+.+
T Consensus       146 ~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~---~--~~~~~~~~  215 (297)
T 2o57_A          146 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRI---K--LHDMGSLG  215 (297)
T ss_dssp             SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHH---T--CSSCCCHH
T ss_pred             CCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHHHHh---c--CCCCCCHH
Confidence            554 3 99999999999988  47999999999999999999998766543211   111111111   1  12346889


Q ss_pred             hccHHHHHhhCCCceeeEEEc
Q 045543          208 EYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +|  .++|+++||+++++...
T Consensus       216 ~~--~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          216 LY--RSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             HH--HHHHHHTTEEEEEEEEC
T ss_pred             HH--HHHHHHCCCeEEEEEEC
Confidence            99  99999999999988764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.38  E-value=5.5e-12  Score=106.82  Aligned_cols=128  Identities=16%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D  134 (239)
                      ..+++.++ ..+..+|||||||+|.                                         +.+|+. ++|.. |
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD  131 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD  131 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence            45566666 7777899999999998                                         223442 34543 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCC-----CChhhhhhhhhhHHHhhccCCccccChhhc
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPE-----ATPATREASSIDIIMLMQLSGEKERTKQEY  209 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~-----~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~  209 (239)
                      +|++..++|++++++...+|+++++.|+|||++++.+...+....     .+.........+......++++...|.+++
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  211 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV  211 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence            999999999998777889999999999999999999987654211     000000011111111112357778899999


Q ss_pred             cHHHHHhhCCCceeeEEEc
Q 045543          210 YGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       210 ~~~~ll~~aGf~~~~~~~~  228 (239)
                        .++++++||+++++...
T Consensus       212 --~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          212 --QECASANGFTVTRVQSL  228 (287)
T ss_dssp             --HHHHHTTTCEEEEEEEC
T ss_pred             --HHHHHhCCcEEEEEEeC
Confidence              99999999999988765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.37  E-value=2.4e-12  Score=106.47  Aligned_cols=122  Identities=13%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-  133 (239)
                      ...+++..+ ..+..+|||||||+|.                                       +.+|+.+ +++. . 
T Consensus        10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f   88 (239)
T 1xxl_A           10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   88 (239)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence            456677777 8888999999999998                                       2345544 4443 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCCccccChhhccHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~g~~rt~~e~~~~  212 (239)
                      |+|++.+++|+|+|.  ..+|+++++.|+|||++++.+...++..   .   ...++.. ..+......+.++.++|  .
T Consensus        89 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~--~  158 (239)
T 1xxl_A           89 DIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEW--Q  158 (239)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH--H
T ss_pred             EEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHH--H
Confidence            999999999999875  5899999999999999999988765431   1   1111111 11111113456789999  9


Q ss_pred             HHHhhCCCceeeEEEc
Q 045543          213 ALTAKNGFKGVNYESF  228 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~  228 (239)
                      ++|+++||+++++...
T Consensus       159 ~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          159 AMFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHCCCcEEEEEee
Confidence            9999999998877653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.37  E-value=3.3e-12  Score=109.85  Aligned_cols=133  Identities=16%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             HHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------
Q 045543           83 VLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------  121 (239)
Q Consensus        83 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------  121 (239)
                      .|.+ +..........+++.++.+.+..+|||||||+|.                                         
T Consensus        93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~  171 (312)
T 3vc1_A           93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRS  171 (312)
T ss_dssp             HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEE
Confidence            3443 4333333345666666546677899999999998                                         


Q ss_pred             Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc
Q 045543          122 CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL  198 (239)
Q Consensus       122 ~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~  198 (239)
                      +.+|+.+ +++. . |+|++..++|+++   ...+|+++++.|+|||++++.+....+..... . .....++-.  . .
T Consensus       172 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~-~~~~~~~~~--~-~  243 (312)
T 3vc1_A          172 RVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-S-KWVSQINAH--F-E  243 (312)
T ss_dssp             EECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-C-HHHHHHHHH--H-T
T ss_pred             EECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-h-HHHHHHHhh--h-c
Confidence            3456655 4553 3 9999999999994   67999999999999999999998776543221 0 111111111  1 1


Q ss_pred             CCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          199 SGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       199 ~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                        ...++.++|  .++|+++||+++++..+
T Consensus       244 --~~~~s~~~~--~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          244 --CNIHSRREY--LRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             --CCCCBHHHH--HHHHHTTTEEEEEEEEC
T ss_pred             --CCCCCHHHH--HHHHHHCCCEEEEEEeC
Confidence              236789999  99999999999988764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.36  E-value=2e-12  Score=101.00  Aligned_cols=115  Identities=19%  Similarity=0.187  Sum_probs=87.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------CccccccccCC-c-ceeeechh
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMFQKILN-G-DAILMKLI  141 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~~~p~-~-D~~~l~~v  141 (239)
                      .+++.++ ..+..+|||||||+|.                                  +.+|  .+++. . |+|++.++
T Consensus         8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~   84 (170)
T 3i9f_A            8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS   84 (170)
T ss_dssp             TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred             HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence            4455566 7778899999999998                                  2233  23443 3 99999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK  221 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~  221 (239)
                      +|++++.  ..+|+++++.|+|||++++.+.........+.                 ....++.+++  .++++  ||+
T Consensus        85 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~--~~~l~--Gf~  141 (170)
T 3i9f_A           85 FHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDY--MGWFS--NFV  141 (170)
T ss_dssp             STTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHH--HHHTT--TEE
T ss_pred             hhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHH--HHHHh--CcE
Confidence            9999765  58999999999999999999876554332210                 1123688999  99999  999


Q ss_pred             eeeEEEcCCceeEEEEE
Q 045543          222 GVNYESFVCNFYIMEFI  238 (239)
Q Consensus       222 ~~~~~~~~~~~~vie~~  238 (239)
                      +++.......+..+.+.
T Consensus       142 ~~~~~~~~~~~~~l~~~  158 (170)
T 3i9f_A          142 VEKRFNPTPYHFGLVLK  158 (170)
T ss_dssp             EEEEECSSTTEEEEEEE
T ss_pred             EEEccCCCCceEEEEEe
Confidence            99999887766666665

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.36  E-value=2.1e-12  Score=104.80  Aligned_cols=112  Identities=18%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL  151 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~  151 (239)
                      ...+++.+....+..+|||||||+|.                     +.+|+.+ +++. . |+|++..++| +.+  ..
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~--~~  131 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN--IR  131 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SSC--HH
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-ccC--HH
Confidence            34455555434566899999999997                     2455554 4444 3 9999999998 443  46


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCc
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCN  231 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~  231 (239)
                      .+|+++++.|+|||++++.+....                           ..+.+++  .++++++||++++.......
T Consensus       132 ~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~--~~~l~~~Gf~~~~~~~~~~~  182 (215)
T 2zfu_A          132 DFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTF--LRAVTKLGFKIVSKDLTNSH  182 (215)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHH--HHHHHHTTEEEEEEECCSTT
T ss_pred             HHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHH--HHHHHHCCCEEEEEecCCCe
Confidence            999999999999999999874210                           1277889  99999999999887666666


Q ss_pred             eeEEEEEC
Q 045543          232 FYIMEFIK  239 (239)
Q Consensus       232 ~~vie~~k  239 (239)
                      ..++.++|
T Consensus       183 ~~~~~~~k  190 (215)
T 2zfu_A          183 FFLFDFQK  190 (215)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEe
Confidence            77777765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.34  E-value=2.6e-12  Score=109.73  Aligned_cols=153  Identities=8%  Similarity=0.104  Sum_probs=90.2

Q ss_pred             HHHHHHHhc-ccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------
Q 045543           83 VLNTAMLSH-NSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------  121 (239)
Q Consensus        83 ~f~~~m~~~-~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------  121 (239)
                      .|...+... .......+++.++ .. ..+|||||||+|.                                        
T Consensus        58 ~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v  135 (299)
T 3g2m_A           58 TYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC  135 (299)
T ss_dssp             --------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTE
T ss_pred             HHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccce
Confidence            344444432 2233456666665 33 3499999999999                                        


Q ss_pred             --Ccccccc-ccCCc-ceeee-chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChh--hhhh----h--
Q 045543          122 --CGWKMFQ-KILNG-DAILM-KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPA--TREA----S--  188 (239)
Q Consensus       122 --~~gD~~~-~~p~~-D~~~l-~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~--~~~~----~--  188 (239)
                        +.+|+.+ +.+.. |+|++ ..++|.+++++...+|+++++.|+|||+|++.....+.....+..  ..+.    .  
T Consensus       136 ~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  215 (299)
T 3g2m_A          136 TLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRY  215 (299)
T ss_dssp             EEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC------------
T ss_pred             EEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEE
Confidence              2345554 33444 98885 477888888888999999999999999999976543321000000  0000    0  


Q ss_pred             -----------hhhHHHhh----------ccCCccccChhhccHHHHHhhCCCceeeEEEcC------CceeEEEEEC
Q 045543          189 -----------SIDIIMLM----------QLSGEKERTKQEYYGMALTAKNGFKGVNYESFV------CNFYIMEFIK  239 (239)
Q Consensus       189 -----------~~dl~ml~----------~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~------~~~~vie~~k  239 (239)
                                 ...+.+..          ....-+.+|.+++  .++|+++||+++++.+..      ....++|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el--~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~  291 (299)
T 3g2m_A          216 VLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQV--VRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM  291 (299)
T ss_dssp             -CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHH--HHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred             EEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHH--HHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence                       00000000          0001124599999  999999999999998875      2356888763

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.34  E-value=5.8e-13  Score=109.44  Aligned_cols=131  Identities=13%  Similarity=0.065  Sum_probs=87.4

Q ss_pred             CCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeee-chhhhcCC-hh
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILM-KLILRNWD-DE  148 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l-~~vlH~~~-d~  148 (239)
                      .+..+|||||||+|.                                  +.+|+.+ +.+.. |+|++ ..++|+++ .+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHH
Confidence            456899999999998                                  3456655 33334 99994 55999885 47


Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhh--------------------hhhhhhHHHhhccCCc-------
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATR--------------------EASSIDIIMLMQLSGE-------  201 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~--------------------~~~~~dl~ml~~~~~g-------  201 (239)
                      +...+|+++++.|+|||++++.+...++...+.....                    ....+++.++....++       
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSD  198 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEE
Confidence            7889999999999999999998765544321100000                    0000111111111121       


Q ss_pred             ----cccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          202 ----KERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       202 ----~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                          +.+|.++|  .++|+++||+++.+....+...++.++|
T Consensus       199 ~~~~~~~t~~~~--~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          199 VHLITLFHQAEY--EAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEECCCHHHH--HHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEeeecCHHHH--HHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                34689999  9999999998777665556788888876

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.32  E-value=5.4e-12  Score=108.18  Aligned_cols=132  Identities=13%  Similarity=0.059  Sum_probs=87.6

Q ss_pred             CCCcceEEEeCCCCCC-------------------------------------------Ccccccc-ccCCc-ceeeech
Q 045543          106 FEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-KILNG-DAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~~p~~-D~~~l~~  140 (239)
                      +.+..+|||||||+|.                                           +.+|+.+ +++.. |+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            5677899999999998                                           3456655 34444 9999999


Q ss_pred             hhhcCCh-hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC--hhh-hh-h---hhhhHHHhhccCCc--cccChhhcc
Q 045543          141 ILRNWDD-EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT--PAT-RE-A---SSIDIIMLMQLSGE--KERTKQEYY  210 (239)
Q Consensus       141 vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~--~~~-~~-~---~~~dl~ml~~~~~g--~~rt~~e~~  210 (239)
                      ++|++++ +.+..+|+++++.|+|||++++.+...++.....  +.. .. .   ......+......+  ..++.+++ 
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT-  274 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH-
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH-
Confidence            9999964 4456799999999999999999886654432211  000 00 0   00000011111011  33789999 


Q ss_pred             HHHHHhhCCCceeeEEEcC-CceeEEEEEC
Q 045543          211 GMALTAKNGFKGVNYESFV-CNFYIMEFIK  239 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~~~~~-~~~~vie~~k  239 (239)
                       .++|+++||+++++.... .....+.++|
T Consensus       275 -~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          275 -RAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             -HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             -HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence             999999999999988654 3445566665

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.31  E-value=1.9e-12  Score=104.01  Aligned_cols=113  Identities=12%  Similarity=0.027  Sum_probs=85.9

Q ss_pred             cceEEEeCCCCCC----------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543          109 IKQLVDVGGGCGK----------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL  151 (239)
Q Consensus       109 ~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~  151 (239)
                      ..+|||||||+|.                                  +.+|+.+ +++. . |+|++.+++|++++++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP  121 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence            6899999999998                                  4567665 4553 3 999999999999988889


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-C
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-C  230 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-~  230 (239)
                      .+|+++++.|+|||++++.+...+...      .+...        ......++.+++  .++|+++||+++++...+ .
T Consensus       122 ~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~~--------~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~~~~~  185 (203)
T 3h2b_A          122 DALVALRMAVEDGGGLLMSFFSGPSLE------PMYHP--------VATAYRWPLPEL--AQALETAGFQVTSSHWDPRF  185 (203)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEECCSSCE------EECCS--------SSCEEECCHHHH--HHHHHHTTEEEEEEEECTTS
T ss_pred             HHHHHHHHHcCCCcEEEEEEccCCchh------hhhch--------hhhhccCCHHHH--HHHHHHCCCcEEEEEecCCC
Confidence            999999999999999999876443311      00000        013345789999  999999999999988765 4


Q ss_pred             ceeEEEE
Q 045543          231 NFYIMEF  237 (239)
Q Consensus       231 ~~~vie~  237 (239)
                      ++..+..
T Consensus       186 p~~~l~~  192 (203)
T 3h2b_A          186 PHAYLTA  192 (203)
T ss_dssp             SEEEEEE
T ss_pred             cchhhhh
Confidence            5555543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.31  E-value=1.2e-11  Score=105.66  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=91.5

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D  134 (239)
                      ..+++.++ ..+..+|||||||+|.                                         +.+|+.+ ++.. |
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD  139 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-FDEPVD  139 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-CCCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-cCCCcc
Confidence            45666666 7788899999999998                                         2234432 3434 9


Q ss_pred             eeeechhhhcCCh-------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChh-----hhhhhhhhHHHhhccCCcc
Q 045543          135 AILMKLILRNWDD-------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPA-----TREASSIDIIMLMQLSGEK  202 (239)
Q Consensus       135 ~~~l~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~-----~~~~~~~dl~ml~~~~~g~  202 (239)
                      +|++..++|+++|       ++...+|+++++.|+|||+++|.+...++.......     .....+.+...-..++++.
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  219 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR  219 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence            9999999999954       677899999999999999999998876543110000     0000011222222345788


Q ss_pred             ccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          203 ERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       203 ~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      ..+.+++  .++++++||+++++....
T Consensus       220 ~~s~~~~--~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          220 LPRISQV--DYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             CCCHHHH--HHHHHHHTCEEEEEEECG
T ss_pred             CCCHHHH--HHHHHhCCcEEEEEEeCc
Confidence            8999999  999999999999887654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.31  E-value=6.2e-12  Score=103.46  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             ceEEEeCCCCCC----------------------------------------CccccccccCC-c-ceeeechhhhcCCh
Q 045543          110 KQLVDVGGGCGK----------------------------------------CGWKMFQKILN-G-DAILMKLILRNWDD  147 (239)
Q Consensus       110 ~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d  147 (239)
                      .+|||||||+|.                                        +.+|+.+..+. . |+|++..++|++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  147 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP  147 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence            599999999998                                        34566653333 3 99999999999998


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ++...+|+++++.|+|||++++.++........+                   -..++.++|  .++|+++||+++++..
T Consensus       148 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------------------~~~~~~~~~--~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          148 EMRPAWAKSMYELLKPDGELITLMYPITDHVGGP-------------------PYKVDVSTF--EEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS-------------------SCCCCHHHH--HHHHGGGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC-------------------CccCCHHHH--HHHHHHcCCeEEEEEe
Confidence            8889999999999999999999887554332211                   011578999  9999999999998876


Q ss_pred             cC
Q 045543          228 FV  229 (239)
Q Consensus       228 ~~  229 (239)
                      .+
T Consensus       207 ~~  208 (235)
T 3lcc_A          207 NP  208 (235)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.30  E-value=1.6e-11  Score=105.64  Aligned_cols=128  Identities=19%  Similarity=0.255  Sum_probs=90.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-D  134 (239)
                      ..+++.++ ..+..+|||||||+|.                                         +.+|+. .+|.. |
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~fD  157 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-DFAEPVD  157 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-GCCCCCS
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH-HCCCCcC
Confidence            45666666 7777899999999997                                         123332 34444 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCC---C-hhh-hhhhhhhHHHhhccCCccccChhhc
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEA---T-PAT-REASSIDIIMLMQLSGEKERTKQEY  209 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~---~-~~~-~~~~~~dl~ml~~~~~g~~rt~~e~  209 (239)
                      +|++..++|++++++...+|+++++.|+|||++++.+...+.....   . +.. ......+...-..++++..++.+++
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  237 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM  237 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHH
Confidence            9999999999988888999999999999999999998876542110   0 000 0001112211112346778899999


Q ss_pred             cHHHHHhhCCCceeeEEEc
Q 045543          210 YGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       210 ~~~~ll~~aGf~~~~~~~~  228 (239)
                        .++++++||+++++...
T Consensus       238 --~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          238 --VEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             --HHHHHHTTCBCCCCEEC
T ss_pred             --HHHHHhCCCEEEEEEec
Confidence              99999999999887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.29  E-value=7e-12  Score=104.19  Aligned_cols=120  Identities=11%  Similarity=-0.008  Sum_probs=85.5

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~  133 (239)
                      ...+++.++ ..+..+|||||||+|.                                         +.+|+.+ +.+..
T Consensus        25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  103 (256)
T 1nkv_A           25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  103 (256)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence            445666666 7778899999999998                                         2344544 22233


Q ss_pred             -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                       |+|++..++|++++.  .++|++++++|+|||++++.+......+...   .....     +........++.++|  .
T Consensus       104 fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~--~  171 (256)
T 1nkv_A          104 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQA-----CGVSSTSDFLTLPGL--V  171 (256)
T ss_dssp             EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHT-----TTCSCGGGSCCHHHH--H
T ss_pred             CCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH---HHHHH-----HhcccccccCCHHHH--H
Confidence             999999999999865  5899999999999999999998765543221   01000     000112255688999  9


Q ss_pred             HHHhhCCCceeeEEEc
Q 045543          213 ALTAKNGFKGVNYESF  228 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~  228 (239)
                      ++|+++||+.+++...
T Consensus       172 ~~l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          172 GAFDDLGYDVVEMVLA  187 (256)
T ss_dssp             HHHHTTTBCCCEEEEC
T ss_pred             HHHHHCCCeeEEEEeC
Confidence            9999999999887543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.29  E-value=5e-12  Score=104.49  Aligned_cols=105  Identities=18%  Similarity=0.262  Sum_probs=81.4

Q ss_pred             CcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-ceeeechhhhc
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-DAILMKLILRN  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~  144 (239)
                      +..+|||||||+|.                                        +.+|+.+ +.+. . |+|++.+++|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            46899999999998                                        2234433 3333 3 99999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceee
Q 045543          145 WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVN  224 (239)
Q Consensus       145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~  224 (239)
                      +++++...+|+++++.|+|||++++.+...+.   ..       .++.     ......++.++|  .++|+++||++++
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-------~~~~-----~~~~~~~~~~~~--~~~l~~aGf~~~~  221 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---GV-------ILDD-----VDSSVCRDLDVV--RRIICSAGLSLLA  221 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---SE-------EEET-----TTTEEEEBHHHH--HHHHHHTTCCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---cc-------eecc-----cCCcccCCHHHH--HHHHHHcCCeEEE
Confidence            99988899999999999999999999987654   10       1110     113445699999  9999999999999


Q ss_pred             EEEcC
Q 045543          225 YESFV  229 (239)
Q Consensus       225 ~~~~~  229 (239)
                      +....
T Consensus       222 ~~~~~  226 (241)
T 2ex4_A          222 EERQE  226 (241)
T ss_dssp             EEECC
T ss_pred             eeecC
Confidence            87653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.29  E-value=1.6e-11  Score=104.17  Aligned_cols=81  Identities=12%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                      .|+|++..+||+++|++...+|++++++|+|||+|+|.+...+.   +.   ......+....... ....||.+|+  .
T Consensus       158 ~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~-~~~~~s~~ei--~  228 (274)
T 2qe6_A          158 PAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LP---AQQKLARITRENLG-EGWARTPEEI--E  228 (274)
T ss_dssp             CCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CH---HHHHHHHHHHHHHS-CCCCBCHHHH--H
T ss_pred             CEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hH---HHHHHHHHHHhcCC-CCccCCHHHH--H
Confidence            39999999999999988899999999999999999999876532   11   11122333222222 4677999999  9


Q ss_pred             HHHhhCCCceee
Q 045543          213 ALTAKNGFKGVN  224 (239)
Q Consensus       213 ~ll~~aGf~~~~  224 (239)
                      ++|  +||++++
T Consensus       229 ~~l--~G~~l~~  238 (274)
T 2qe6_A          229 RQF--GDFELVE  238 (274)
T ss_dssp             HTT--TTCEECT
T ss_pred             HHh--CCCeEcc
Confidence            999  5998775

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.27  E-value=1.4e-11  Score=99.67  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-ccCCc-ceeeechhhh
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILNG-DAILMKLILR  143 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~~-D~~~l~~vlH  143 (239)
                      +...+..+.+..+|||||||+|.                                 +.+|+.+ +.+.. |+|++.++||
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  113 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLL  113 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGG
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchh
Confidence            33333335567899999999998                                 3456554 31223 9999999999


Q ss_pred             cCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC-Cce
Q 045543          144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG-FKG  222 (239)
Q Consensus       144 ~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG-f~~  222 (239)
                      ++++++...+|+++++.|+|||++++..........        ....       ..-..++.+++  .++++++| |++
T Consensus       114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~--~~~l~~aG~f~~  176 (211)
T 3e23_A          114 HVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWL--RARYAEAGTWAS  176 (211)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHH--HHHHHHHCCCSE
T ss_pred             hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHH--HHHHHhCCCcEE
Confidence            999888999999999999999999997543221110        0000       01134689999  99999999 999


Q ss_pred             eeEEEc
Q 045543          223 VNYESF  228 (239)
Q Consensus       223 ~~~~~~  228 (239)
                      +++...
T Consensus       177 ~~~~~~  182 (211)
T 3e23_A          177 VAVESS  182 (211)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            988654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.27  E-value=9.6e-12  Score=104.66  Aligned_cols=116  Identities=17%  Similarity=0.273  Sum_probs=81.6

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-ceeeechh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-DAILMKLI  141 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-D~~~l~~v  141 (239)
                      +.+..+|||||||+|.                                         +.+|+.+ +++. . |+|++.++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            6778899999999998                                         2345554 4443 3 99999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC---CCCChh-hhhhhhhhHHHhhccCCccccChhhccHHHHHhh
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI---PEATPA-TREASSIDIIMLMQLSGEKERTKQEYYGMALTAK  217 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~---~~~~~~-~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~  217 (239)
                      +|+++|..  .+|+++++.|+|||++++.+......   +..+.. ........  +... .++..++..++  .++|++
T Consensus       115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l--~~~l~~  187 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQAY-MKGNSLVGRQI--YPLLQE  187 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHHH-TTCCTTGGGGH--HHHHHH
T ss_pred             hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHHh-cCCCcchHHHH--HHHHHH
Confidence            99998875  89999999999999999988543221   111100 11111111  1122 25666788899  999999


Q ss_pred             CCCceeeEEEc
Q 045543          218 NGFKGVNYESF  228 (239)
Q Consensus       218 aGf~~~~~~~~  228 (239)
                      +||+++++...
T Consensus       188 aGf~~v~~~~~  198 (276)
T 3mgg_A          188 SGFEKIRVEPR  198 (276)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCCeEEEeeE
Confidence            99999887654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.27  E-value=3.4e-11  Score=99.02  Aligned_cols=146  Identities=15%  Similarity=0.100  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHhccc----ccHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------
Q 045543           78 SRFNEVLNTAMLSHNS----IVMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------  121 (239)
Q Consensus        78 ~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------  121 (239)
                      ++..+.|...+.....    ...+.+.+.++ ..+..+|||||||+|.                                
T Consensus        10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~   88 (243)
T 3bkw_A           10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD   88 (243)
T ss_dssp             ---------------CGGGCTTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHhccCCccHHHHHhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc
Confidence            4455566665554332    22345666666 5567899999999998                                


Q ss_pred             -----Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC--CCCCCChhh-------
Q 045543          122 -----CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV--VIPEATPAT-------  184 (239)
Q Consensus       122 -----~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~--~~~~~~~~~-------  184 (239)
                           +.+|+.+ +++. . |+|++.+++|++++.  ..+|+++++.|+|||++++......  ......+..       
T Consensus        89 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (243)
T 3bkw_A           89 TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRT  166 (243)
T ss_dssp             SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEE
T ss_pred             CCceEEEcChhhccCCCCCceEEEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceE
Confidence                 2345554 4443 3 999999999999764  5899999999999999999764211  000000000       


Q ss_pred             -hhhhhh-----hHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          185 -REASSI-----DIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       185 -~~~~~~-----dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                       .....+     ....+........+|.++|  .++|+++||+++++...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          167 WPIDRYLVEGPRKTDWLAKGVVKHHRTVGTT--LNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EEECCTTCCEEECTTHHHHSCCEEECCHHHH--HHHHHHTTCEEEEEEEC
T ss_pred             EeecccccccceeeeeccCceEEEeccHHHH--HHHHHHcCCEeeeeccC
Confidence             000000     0000000002234689999  99999999999988753

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.25  E-value=1e-11  Score=102.14  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=82.0

Q ss_pred             CcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-ceeeech-hhhcCC
Q 045543          108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNWD  146 (239)
Q Consensus       108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~~  146 (239)
                      +..+|||||||+|.                                      +.+|+.+ +.+.. |+|++.. +||+++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  116 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccC
Confidence            56899999999998                                      2345544 34444 9999998 999994


Q ss_pred             -hhHHHHHHHHHHhhCCCCceEEEEeeecCCC-----CCCChh---h----hh-------hhhhhHHHhhccCCc-----
Q 045543          147 -DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI-----PEATPA---T----RE-------ASSIDIIMLMQLSGE-----  201 (239)
Q Consensus       147 -d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~-----~~~~~~---~----~~-------~~~~dl~ml~~~~~g-----  201 (239)
                       +++...+|+++++.|+|||++++.-.. +..     +.....   .    ..       ....++.++.. .+|     
T Consensus       117 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  194 (246)
T 1y8c_A          117 DSDDLKKYFKAVSNHLKEGGVFIFDINS-YYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR-DGEFYKRF  194 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEEEEC-HHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEE-CSSSEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEecC-HHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEe-cCCccccc
Confidence             477889999999999999999873221 100     000000   0    00       00001111110 111     


Q ss_pred             ------cccChhhccHHHHHhhCCCceeeEEEc--------CCceeEEEEEC
Q 045543          202 ------KERTKQEYYGMALTAKNGFKGVNYESF--------VCNFYIMEFIK  239 (239)
Q Consensus       202 ------~~rt~~e~~~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k  239 (239)
                            +.+|.++|  .++|+++||+++++...        .+...++.++|
T Consensus       195 ~~~~~~~~~~~~~l--~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          195 DEEHEERAYKEEDI--EKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEEEEEECCCHHHH--HHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             EEEEEEEcCCHHHH--HHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence                  44599999  99999999999998754        23455777775

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.24  E-value=3.3e-11  Score=98.35  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             ceeeechhhhcCCh-hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc--------C-----
Q 045543          134 DAILMKLILRNWDD-EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL--------S-----  199 (239)
Q Consensus       134 D~~~l~~vlH~~~d-~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~--------~-----  199 (239)
                      |+|++..++|++++ ++...+|+++++.|+|||++++.+.......  + ........++......        .     
T Consensus       103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (235)
T 3sm3_A          103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETE  179 (235)
T ss_dssp             EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred             eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcc
Confidence            99999999999975 4467999999999999999999987653321  1 0000111111111000        0     


Q ss_pred             -CccccChhhccHHHHHhhCCCceeeEEE
Q 045543          200 -GEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       200 -~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                       ....++.++|  .++|+++||+++++..
T Consensus       180 ~~~~~~~~~~l--~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          180 FIAHHFTEKEL--VFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             EEEECBCHHHH--HHHHHTTTEEEEEEEE
T ss_pred             eeeEeCCHHHH--HHHHHHcCCEEEEEEe
Confidence             0135789999  9999999999998764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.24  E-value=2.3e-11  Score=101.03  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=84.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-  133 (239)
                      .+++.+..+.+..+|||||||+|.                                         +.+|+.+ +++. . 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  115 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL  115 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence            444555336677899999999998                                         3455544 4443 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|++..++|+++   ...+|+++++.|+|||++++.+..........      ...+...-.   ....++.+++  .+
T Consensus       116 D~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~--~~  181 (257)
T 3f4k_A          116 DLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTC--ID  181 (257)
T ss_dssp             EEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHH--HH
T ss_pred             EEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHH--HH
Confidence            9999999999993   35899999999999999999997654433221      111111111   1235689999  99


Q ss_pred             HHhhCCCceeeEEEcC
Q 045543          214 LTAKNGFKGVNYESFV  229 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~  229 (239)
                      +|+++||++++....+
T Consensus       182 ~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          182 KMERAGYTPTAHFILP  197 (257)
T ss_dssp             HHHHTTEEEEEEEECC
T ss_pred             HHHHCCCeEEEEEECC
Confidence            9999999999887664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.23  E-value=2.2e-11  Score=100.18  Aligned_cols=131  Identities=14%  Similarity=0.159  Sum_probs=81.6

Q ss_pred             CCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCCc-ceeeech-hhhcC-
Q 045543          107 EKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILNG-DAILMKL-ILRNW-  145 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~~-D~~~l~~-vlH~~-  145 (239)
                      ....+|||||||+|.                                     +.+|+.+ +.+.. |+|++.. ++|++ 
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~  111 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQ  111 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCC
T ss_pred             CCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcC
Confidence            345899999999997                                     2345544 34444 9999986 99988 


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEEEeeec-------CCC-----CCC-C--hhh-----hhhhhhhHHHhhccCCc----
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIIIIDSTT-------VVI-----PEA-T--PAT-----REASSIDIIMLMQLSGE----  201 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli~d~~~-------~~~-----~~~-~--~~~-----~~~~~~dl~ml~~~~~g----  201 (239)
                      +.++...+|+++++.|+|||++++.-...       ++.     ... .  +..     ......++.++....+|    
T Consensus       112 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (243)
T 3d2l_A          112 TEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDR  191 (243)
T ss_dssp             SHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEE
Confidence            56778899999999999999998732110       000     000 0  000     00000111111111112    


Q ss_pred             -------cccChhhccHHHHHhhCCCceeeEEEc--------CCceeEEEEEC
Q 045543          202 -------KERTKQEYYGMALTAKNGFKGVNYESF--------VCNFYIMEFIK  239 (239)
Q Consensus       202 -------~~rt~~e~~~~~ll~~aGf~~~~~~~~--------~~~~~vie~~k  239 (239)
                             +.+|.+++  .++|+++||+++++...        .+...++.|+|
T Consensus       192 ~~~~~~~~~~~~~~l--~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K  242 (243)
T 3d2l_A          192 VDETHHQRTYPPEQY--ITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK  242 (243)
T ss_dssp             EEEEEEEECCCHHHH--HHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred             EEEEEeEecCCHHHH--HHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence                   34699999  99999999999998753        13455777775

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.23  E-value=1.5e-11  Score=101.17  Aligned_cols=110  Identities=19%  Similarity=0.151  Sum_probs=78.6

Q ss_pred             CCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d  147 (239)
                      ++..+|||||||+|.                                    +.+|+.+ +++. . |+|++.+++|++++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  131 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE  131 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence            456799999999998                                    3456655 4543 3 99999999999977


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      .  ..+|+++++.|+|||+++|.+.........   ..+.....     .......++.+++  .++++++||++++...
T Consensus       132 ~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~  199 (242)
T 3l8d_A          132 P--LRALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRLYG-----KDVVCNTMMPWEF--EQLVKEQGFKVVDGIG  199 (242)
T ss_dssp             H--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGGGT-----CCCSSCCCCHHHH--HHHHHHTTEEEEEEEE
T ss_pred             H--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhhcc-----ccccccCCCHHHH--HHHHHHcCCEEEEeec
Confidence            6  488999999999999999987543322110   01111111     0112345788999  9999999999998775


Q ss_pred             c
Q 045543          228 F  228 (239)
Q Consensus       228 ~  228 (239)
                      +
T Consensus       200 ~  200 (242)
T 3l8d_A          200 V  200 (242)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.22  E-value=6.2e-11  Score=94.40  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=82.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-ce
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      +.+++.++ ..+..+|||||||+|.                                       +.+|+.+ +.+.. |+
T Consensus        22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  100 (199)
T 2xvm_A           22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDF  100 (199)
T ss_dssp             HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEE
T ss_pred             HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceE
Confidence            45666666 5666899999999998                                       2345544 33334 99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      |++..++|++++++...+|+++++.|+|||++++++...++....+                ......++.+++  ++++
T Consensus       101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l--~~~~  162 (199)
T 2xvm_A          101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGEL--RRYY  162 (199)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHH--HHHT
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHH--HHHh
Confidence            9999999999988889999999999999999999887654432110                002234688899  9999


Q ss_pred             hhCCCceeeEEE
Q 045543          216 AKNGFKGVNYES  227 (239)
Q Consensus       216 ~~aGf~~~~~~~  227 (239)
                      ++  |++++...
T Consensus       163 ~~--f~~~~~~~  172 (199)
T 2xvm_A          163 EG--WERVKYNE  172 (199)
T ss_dssp             TT--SEEEEEEC
T ss_pred             cC--CeEEEecc
Confidence            87  99887643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.21  E-value=3.4e-11  Score=100.95  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=84.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCC-c-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILN-G-  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~-~-  133 (239)
                      .+++.++.+.+..+|||||||+|.                                         +.+|+.+ +++. . 
T Consensus        36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL  115 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence            344444435677899999999998                                         3345544 4443 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|++..++|+++   ...+|+++++.|+|||++++.+..........      ...+...- .  ....++.+++  .+
T Consensus       116 D~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~~~--~~  181 (267)
T 3kkz_A          116 DLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMD-A--YPEIDTIPNQ--VA  181 (267)
T ss_dssp             EEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHH-H--CTTCEEHHHH--HH
T ss_pred             EEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHH-h--CCCCCCHHHH--HH
Confidence            9999999999993   35889999999999999999998755433221      11111111 1  2345688999  99


Q ss_pred             HHhhCCCceeeEEEcC
Q 045543          214 LTAKNGFKGVNYESFV  229 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~  229 (239)
                      +++++||+++++..++
T Consensus       182 ~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          182 KIHKAGYLPVATFILP  197 (267)
T ss_dssp             HHHHTTEEEEEEEECC
T ss_pred             HHHHCCCEEEEEEECC
Confidence            9999999999887765

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=6.4e-11  Score=99.17  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-ccCC-c-ceeeec
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILN-G-DAILMK  139 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~-~-D~~~l~  139 (239)
                      ...+++.++ ..+..+|||||||+|.                                 +.+|+.+ +++. . |+|++.
T Consensus        23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (261)
T 3ege_A           23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI  101 (261)
T ss_dssp             HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred             HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence            345566666 6778999999999998                                 3456554 4553 3 999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      +++|+++|.  ..+|+++++.|+ ||++++.+...+..... +.   ...+.- +.... ....++.+++  . +|+++|
T Consensus       102 ~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~-~~~~~-~~~~~~~~~~--~-~l~~aG  169 (261)
T 3ege_A          102 LAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPF-LWEDA-LRFLPLDEQI--N-LLQENT  169 (261)
T ss_dssp             SCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHH-HHHHH-HTSCCHHHHH--H-HHHHHH
T ss_pred             chHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHH-Hhhhh-hhhCCCHHHH--H-HHHHcC
Confidence            999999765  589999999999 99999998754332211 11   111111 11111 2334566777  8 999999


Q ss_pred             CceeeEEEc
Q 045543          220 FKGVNYESF  228 (239)
Q Consensus       220 f~~~~~~~~  228 (239)
                      |+.+++...
T Consensus       170 F~~v~~~~~  178 (261)
T 3ege_A          170 KRRVEAIPF  178 (261)
T ss_dssp             CSEEEEEEC
T ss_pred             CCceeEEEe
Confidence            999887664

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.19  E-value=8.2e-11  Score=96.67  Aligned_cols=112  Identities=14%  Similarity=0.210  Sum_probs=76.8

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------CccccccccCC-c-ceeeechhhhcCChh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILN-G-DAILMKLILRNWDDE  148 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d~  148 (239)
                      ..+..+|||||||+|.                                   +.+|+.+..+. . |+|++.++||+++|.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  119 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP  119 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence            3455789999999998                                   12344443333 3 999999999999876


Q ss_pred             HHHHHHHHHH-hhCCCCceEEEEeeecCCCCCCChhhhhh----------hhhhHHHhhccCCccccChhhccHHHHHhh
Q 045543          149 HCLSLLKNCY-EAIPGNGKIIIIDSTTVVIPEATPATREA----------SSIDIIMLMQLSGEKERTKQEYYGMALTAK  217 (239)
Q Consensus       149 ~~~~iL~~~~-~aL~pgg~lli~d~~~~~~~~~~~~~~~~----------~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~  217 (239)
                        ..+|++++ +.|+|||+++|.+......     .....          .+.+... . ....+.+|.+++  .++|++
T Consensus       120 --~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--~~~l~~  188 (250)
T 2p7i_A          120 --VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEF-A-HGHRCTYALDTL--ERDASR  188 (250)
T ss_dssp             --HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHH-H-TTCCCCCCHHHH--HHHHHH
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccc-c-ccccccCCHHHH--HHHHHH
Confidence              58999999 9999999999987532210     00000          0000000 1 113456799999  999999


Q ss_pred             CCCceeeEEEc
Q 045543          218 NGFKGVNYESF  228 (239)
Q Consensus       218 aGf~~~~~~~~  228 (239)
                      +||+++++...
T Consensus       189 ~Gf~~~~~~~~  199 (250)
T 2p7i_A          189 AGLQVTYRSGI  199 (250)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEEeee
Confidence            99999987653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.19  E-value=1.5e-10  Score=94.19  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=75.7

Q ss_pred             cceEEEeCCCCCC----------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHH
Q 045543          109 IKQLVDVGGGCGK----------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNC  157 (239)
Q Consensus       109 ~~~vlDvGGG~G~----------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~  157 (239)
                      ..+|||||||+|.                            +.+|+.+ +++. . |+|++.+++|++++.  ..+|+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~  125 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALKEA  125 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHHHH
Confidence            6799999999997                            2345544 4443 3 999999999999765  5899999


Q ss_pred             HhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          158 YEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       158 ~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ++.|+|||++++.+.....    + ......... ...........++.+++  .++|+++||+++++...
T Consensus       126 ~~~L~pgG~l~i~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~~~~l--~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          126 YRILKKGGYLIVGIVDRES----F-LGREYEKNK-EKSVFYKNARFFSTEEL--MDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             HHHEEEEEEEEEEEECSSS----H-HHHHHHHTT-TC-CCSTTCCCCCHHHH--HHHHHHTTCEEEEEEEE
T ss_pred             HHHcCCCcEEEEEEeCCcc----H-HHHHHHHHh-cCcchhcccccCCHHHH--HHHHHHCCCeEEEEecc
Confidence            9999999999998753211    1 100000000 00000112455799999  99999999999887654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.17  E-value=1e-10  Score=97.29  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=74.2

Q ss_pred             CCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhc
Q 045543          106 FEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRN  144 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~  144 (239)
                      +.+..+|||||||+|.                                      +.+|+.+ +++. . |+|++.+++|+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  116 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL  116 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence            5677899999999998                                      2344443 3444 3 99999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC---CccccChhhccHHHHHhhCCCc
Q 045543          145 WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS---GEKERTKQEYYGMALTAKNGFK  221 (239)
Q Consensus       145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~---~g~~rt~~e~~~~~ll~~aGf~  221 (239)
                      ++|.  ..+|+++++.|+|||++++. ...++  ..+.......+..+......+   ....++.+++  .++|+++||+
T Consensus       117 ~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~Gf~  189 (263)
T 2yqz_A          117 VPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV--EEALRRLGLK  189 (263)
T ss_dssp             CTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHTTCC
T ss_pred             cCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHH--HHHHHHcCCC
Confidence            9864  58999999999999999987 22211  111000011111111111010   1234578889  9999999999


Q ss_pred             eeeEE
Q 045543          222 GVNYE  226 (239)
Q Consensus       222 ~~~~~  226 (239)
                      ++.+.
T Consensus       190 ~~~~~  194 (263)
T 2yqz_A          190 PRTRE  194 (263)
T ss_dssp             CEEEE
T ss_pred             cceEE
Confidence            87653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=2.2e-10  Score=90.58  Aligned_cols=118  Identities=15%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhcccc-cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------Ccc
Q 045543           80 FNEVLNTAMLSHNSI-VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGW  124 (239)
Q Consensus        80 ~~~~f~~~m~~~~~~-~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~g  124 (239)
                      +.+.|.......... ....++..+  ..+..+|||||||+|.                                  +.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~   96 (195)
T 3cgg_A           19 YAQRWRNLAAAGNDIYGEARLIDAM--APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVG   96 (195)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHH--SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEEC
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHh--ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEc
Confidence            344555444432222 123556555  3567899999999998                                  345


Q ss_pred             cccc-ccCC-c-ceeeec-hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          125 KMFQ-KILN-G-DAILMK-LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       125 D~~~-~~p~-~-D~~~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                      |+.+ +++. . |+|++. .++|++++++...+|+++++.|+|||++++....                           
T Consensus        97 d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------  149 (195)
T 3cgg_A           97 DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------  149 (195)
T ss_dssp             CTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------
T ss_pred             ccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------
Confidence            6665 4543 3 999998 8999999888899999999999999999885421                           


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ...++.+++  .++++++||++++....
T Consensus       150 ~~~~~~~~~--~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          150 GRGWVFGDF--LEVAERVGLELENAFES  175 (195)
T ss_dssp             TSSCCHHHH--HHHHHHHTEEEEEEESS
T ss_pred             CCCcCHHHH--HHHHHHcCCEEeeeecc
Confidence            112577889  99999999999887543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.17  E-value=6.3e-11  Score=100.25  Aligned_cols=123  Identities=18%  Similarity=0.197  Sum_probs=80.8

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-c-cCC-c-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-K-ILN-G-  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~-~p~-~-  133 (239)
                      .+++.++ . +..+|||||||+|.                                        +.+|+.+ + ++. . 
T Consensus        60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            4444554 3 35799999999998                                        3345544 2 333 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-------cCCccccCh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-------LSGEKERTK  206 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-------~~~g~~rt~  206 (239)
                      |+|++.+++|++++.  ..+|+++++.|+|||++++.+........   .......++...-..       ......++.
T Consensus       138 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (285)
T 4htf_A          138 DLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLM---HNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP  212 (285)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHH---HHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred             eEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHH---HHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence            999999999999876  58999999999999999998764322100   000000001100000       012245688


Q ss_pred             hhccHHHHHhhCCCceeeEEEcC
Q 045543          207 QEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       207 ~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      +++  .++|+++||+++++..+.
T Consensus       213 ~~l--~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          213 TQV--YLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHH--HHHHHHTTCEEEEEEEES
T ss_pred             HHH--HHHHHHCCCceeeeeeEE
Confidence            999  999999999999887653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.16  E-value=8.2e-11  Score=95.59  Aligned_cols=132  Identities=14%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             HHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------Ccccccc-
Q 045543           82 EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------CGWKMFQ-  128 (239)
Q Consensus        82 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------~~gD~~~-  128 (239)
                      ..|...+..........+++.++  .+..+|||||||+|.                                +.+|+.+ 
T Consensus         8 ~~y~~~~~~~~~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~   85 (230)
T 3cc8_A            8 SLYEEKSGHYYNAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETM   85 (230)
T ss_dssp             ------------CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTC
T ss_pred             hhhhccchhHHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhc
Confidence            34444444444444456666665  566899999999998                                3355543 


Q ss_pred             --ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH--hhc-----
Q 045543          129 --KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM--LMQ-----  197 (239)
Q Consensus       129 --~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m--l~~-----  197 (239)
                        +++. . |+|++.+++|++++.  ..+|+++++.|+|||++++........         .....+..  +..     
T Consensus        86 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  154 (230)
T 3cc8_A           86 DMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---------SVLAPLLAGNWTYTEYGL  154 (230)
T ss_dssp             CCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---------HHHHHHHTTCCCCBSSST
T ss_pred             CCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---------HHHHHHhcCCceeccCCC
Confidence              3343 3 999999999999876  489999999999999999976432210         00000000  000     


Q ss_pred             --cCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          198 --LSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       198 --~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                        ....+.+|.++|  .++++++||+++++...
T Consensus       155 ~~~~~~~~~~~~~~--~~~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          155 LDKTHIRFFTFNEM--LRMFLKAGYSISKVDRV  185 (230)
T ss_dssp             TBTTCCCCCCHHHH--HHHHHHTTEEEEEEEEE
T ss_pred             CCcceEEEecHHHH--HHHHHHcCCeEEEEEec
Confidence              001244689999  99999999999988764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.14  E-value=1.7e-10  Score=97.81  Aligned_cols=125  Identities=13%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~-D  134 (239)
                      .+++.+....+..+|||||||+|.                                         +.+|+.+ +.+.. |
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD   91 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   91 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence            334444326677999999999998                                         3345554 33444 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec-----C---CCCCCChhhhhhhhhhHHH--hhccCCcccc
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT-----V---VIPEATPATREASSIDIIM--LMQLSGEKER  204 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~-----~---~~~~~~~~~~~~~~~dl~m--l~~~~~g~~r  204 (239)
                      +|++..++|+++|.  ..+|+++++.|+|||++++.+...     .   ++...+.......+..+..  .... +....
T Consensus        92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  168 (284)
T 3gu3_A           92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGN  168 (284)
T ss_dssp             EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-CCCTT
T ss_pred             EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-ccccc
Confidence            99999999999876  499999999999999999988651     1   1111000000111111111  1111 34455


Q ss_pred             ChhhccHHHHHhhCCCceeeEEE
Q 045543          205 TKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       205 t~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      +..++  .++|+++||+.+++..
T Consensus       169 ~~~~l--~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          169 IGMKI--PIYLSELGVKNIECRV  189 (284)
T ss_dssp             GGGTH--HHHHHHTTCEEEEEEE
T ss_pred             HHHHH--HHHHHHcCCCeEEEEE
Confidence            67788  9999999999887643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.14  E-value=3.9e-11  Score=99.64  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCC-c-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILN-G-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~-~-D~~  136 (239)
                      +.+.+.++ ..+..+|||||||+|.                                     +.+|+.+ +++. . |+|
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence            34555555 4567899999999998                                     3456554 4443 3 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC---C--------CCCCChhhhhhhhhhH-----HHhhccCC
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV---V--------IPEATPATREASSIDI-----IMLMQLSG  200 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~---~--------~~~~~~~~~~~~~~dl-----~ml~~~~~  200 (239)
                      ++..++|++++.  ..+|+++++.|+|||++++......   .        .............++-     ..+.....
T Consensus       113 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (253)
T 3g5l_A          113 LSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ  190 (253)
T ss_dssp             EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred             EEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence            999999999664  6999999999999999999643210   0        0000000000000000     00000001


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ...+|.++|  .++|+++||+++++...
T Consensus       191 ~~~~t~~~~--~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          191 KYHRTVTTY--IQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             EECCCHHHH--HHHHHHTTEEEEEEECC
T ss_pred             cEecCHHHH--HHHHHHcCCeeeeeecC
Confidence            123499999  99999999999988743

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.13  E-value=3e-11  Score=97.96  Aligned_cols=122  Identities=16%  Similarity=0.088  Sum_probs=79.4

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc----ccC--C-ccee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ----KIL--N-GDAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~----~~p--~-~D~~  136 (239)
                      ..+++.+. .....+|||||||+|.                                 ..+|+.+    +.+  . .|+|
T Consensus        42 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           42 QAILLAIL-GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             HHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             HHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence            34666665 4556999999999998                                 2233322    112  2 3999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc-----CCccccChhhccH
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL-----SGEKERTKQEYYG  211 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~-----~~g~~rt~~e~~~  211 (239)
                      ++.+++| +.+.  ..+|+++++.|+|||+++|.+............   ..+.........     .....+|.++|  
T Consensus       121 ~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  192 (227)
T 3e8s_A          121 CANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW--  192 (227)
T ss_dssp             EEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH--
T ss_pred             EECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH--
Confidence            9999999 6554  489999999999999999988654332221100   000000000000     01134699999  


Q ss_pred             HHHHhhCCCceeeEEE
Q 045543          212 MALTAKNGFKGVNYES  227 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~  227 (239)
                      .++|+++||+++++..
T Consensus       193 ~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          193 LNALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHHTTEEEEEEEC
T ss_pred             HHHHHHcCCeEEEEec
Confidence            9999999999998875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=7.2e-11  Score=99.65  Aligned_cols=124  Identities=15%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------Ccccccc-ccCCc-ceeee
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------CGWKMFQ-KILNG-DAILM  138 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~~gD~~~-~~p~~-D~~~l  138 (239)
                      ....+++.++ ..+..+|||||||+|.                                  +.+|+.+ +++.. |+|++
T Consensus        45 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  123 (279)
T 3ccf_A           45 YGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS  123 (279)
T ss_dssp             SCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence            3456677776 6777899999999998                                  3345544 33334 99999


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh------ccCCccccChhhccHH
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM------QLSGEKERTKQEYYGM  212 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~------~~~~g~~rt~~e~~~~  212 (239)
                      .+++|+++|.  ..+|+++++.|+|||++++........  .   .....+.......      ....-..++.+++  .
T Consensus       124 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  194 (279)
T 3ccf_A          124 NAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--K---YILEALYNALETLGIHNPQALNPWYFPSIGEY--V  194 (279)
T ss_dssp             ESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--H---HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH--H
T ss_pred             cchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--H---HHHHHHHHHHHhcCCccccCcCceeCCCHHHH--H
Confidence            9999999876  489999999999999999876532211  0   0111111110000      0001134588999  9


Q ss_pred             HHHhhCCCceeeEEEc
Q 045543          213 ALTAKNGFKGVNYESF  228 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~  228 (239)
                      ++|+++||+++++...
T Consensus       195 ~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          195 NILEKQGFDVTYAALF  210 (279)
T ss_dssp             HHHHHHTEEEEEEEEE
T ss_pred             HHHHHcCCEEEEEEEe
Confidence            9999999999876544

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.08  E-value=3.6e-10  Score=91.70  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=52.9

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH-
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM-  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~-  212 (239)
                      |+|++..++|++++++..++|+++++.|+|||.+++.........-+       ......+.. ......++.+++  . 
T Consensus       104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l--~~  173 (219)
T 3jwg_A          104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLRH-RDHRFEWTRKEF--QT  173 (219)
T ss_dssp             SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----GG-GCCTTSBCHHHH--HH
T ss_pred             CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCcccccc-cCceeeecHHHH--HH
Confidence            99999999999999988999999999999999666554321110000       000000000 112334588888  7 


Q ss_pred             ---HHHhhCCCceee
Q 045543          213 ---ALTAKNGFKGVN  224 (239)
Q Consensus       213 ---~ll~~aGf~~~~  224 (239)
                         ++++++||++.-
T Consensus       174 ~~~~l~~~~Gf~v~~  188 (219)
T 3jwg_A          174 WAVKVAEKYGYSVRF  188 (219)
T ss_dssp             HHHHHHHHHTEEEEE
T ss_pred             HHHHHHHHCCcEEEE
Confidence               888999997643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=2.7e-10  Score=94.06  Aligned_cols=114  Identities=14%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             CCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-------cceeeechh
Q 045543          106 FEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-------GDAILMKLI  141 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-------~D~~~l~~v  141 (239)
                      ..+..+|||||||+|.                                    +.+|+.+ +.+.       .|+|++..+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~  133 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG  133 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence            4566899999999998                                    3455554 2211       389999999


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-------hhhhhHHHhhccCCccccChhhccHHHH
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-------ASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-------~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|++++++...+|++++++|+|||+++|.+...++..   .....       .....-.+-... ....++.+++  .++
T Consensus       134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~  207 (245)
T 3ggd_A          134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGI-RPGIFTAEDI--ELY  207 (245)
T ss_dssp             STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTC-CCCCCCHHHH--HHH
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCC-CCCccCHHHH--HHH
Confidence            9999988889999999999999999999998644310   00000       000000000001 1123688999  999


Q ss_pred             HhhCCCceeeEEE
Q 045543          215 TAKNGFKGVNYES  227 (239)
Q Consensus       215 l~~aGf~~~~~~~  227 (239)
                      +  +||++++...
T Consensus       208 ~--aGf~~~~~~~  218 (245)
T 3ggd_A          208 F--PDFEILSQGE  218 (245)
T ss_dssp             C--TTEEEEEEEC
T ss_pred             h--CCCEEEeccc
Confidence            9  9999987644

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.06  E-value=9e-11  Score=103.66  Aligned_cols=159  Identities=11%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHh-cCCCcc-ccc---
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLH-YGIGDY-EHA---   74 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~-~g~~~~-~~l---   74 (239)
                      ++|..| .    +|.|++|||+++|+    +++.+.++|+.|++.  .+..++ |++|+.+..++. .+.... ++.   
T Consensus        47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~  116 (373)
T 2qm3_A           47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFEDG-VKLTEKGEELVAEYGIGKRYDFTCPH  116 (373)
T ss_dssp             HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECSSS-SEECHHHHHHHHHHTCCCCCC-----
T ss_pred             HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEECCC-EEECHHHHHHHHhcCccccccccchh
Confidence            678888 5    59999999999999    999999999999986  333335 999998876652 221110 000   


Q ss_pred             -c-------cCchHHHHHHHHHHhcc-------c--ccH----HHHHhhcc-CCCCcceEEEeCCCCCC-----------
Q 045543           75 -G-------LDSRFNEVLNTAMLSHN-------S--IVM----NRILDYYK-GFEKIKQLVDVGGGCGK-----------  121 (239)
Q Consensus        75 -~-------~~~~~~~~f~~~m~~~~-------~--~~~----~~~~~~~~-~~~~~~~vlDvGGG~G~-----------  121 (239)
                       .       ......+.+........       .  ...    ..++.... ...+..+|||+| |+|.           
T Consensus       117 ~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~  195 (373)
T 2qm3_A          117 CQGKTVDLQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLP  195 (373)
T ss_dssp             -------CGGGHHHHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCC
T ss_pred             hcCCCcchhhhHHHHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCC
Confidence             0       00111122222222211       1  011    11211111 022458999999 9998           


Q ss_pred             ------------------------------CccccccccCC----c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCce
Q 045543          122 ------------------------------CGWKMFQKILN----G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGK  166 (239)
Q Consensus       122 ------------------------------~~gD~~~~~p~----~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~  166 (239)
                                                    +.+|+++.+|.    . |+|++...+|...   ...+|++++++|+|||+
T Consensus       196 ~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~  272 (373)
T 2qm3_A          196 KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRC  272 (373)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCe
Confidence                                          46777764552    3 9999987776542   48999999999999998


Q ss_pred             EEEEeeec
Q 045543          167 IIIIDSTT  174 (239)
Q Consensus       167 lli~d~~~  174 (239)
                      +++++...
T Consensus       273 ~~~~~~~~  280 (373)
T 2qm3_A          273 AGYFGITR  280 (373)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEec
Confidence            87777653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.06  E-value=1.1e-10  Score=104.31  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc-------ccC-C-cc
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ-------KIL-N-GD  134 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~-------~~p-~-~D  134 (239)
                      .+..+++.++ ..+..+|||||||+|.                               ...++|.       +++ . .|
T Consensus        95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD  173 (416)
T 4e2x_A           95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPAN  173 (416)
T ss_dssp             HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEE
Confidence            3456677776 7778899999999999                               0112221       122 2 39


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHH
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      +|++.++||+++|.  ..+|+++++.|+|||++++........     ..  ...++  ... ......+|.+++  .++
T Consensus       174 ~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~--~~~~~--~~~-~~~~~~~s~~~l--~~l  239 (416)
T 4e2x_A          174 VIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI-----VA--KTSFD--QIF-DEHFFLFSATSV--QGM  239 (416)
T ss_dssp             EEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH-----HH--HTCGG--GCS-TTCCEECCHHHH--HHH
T ss_pred             EEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh-----hh--hcchh--hhh-hhhhhcCCHHHH--HHH
Confidence            99999999999865  689999999999999999865432210     00  00011  000 123455789999  999


Q ss_pred             HhhCCCceeeEEEcC
Q 045543          215 TAKNGFKGVNYESFV  229 (239)
Q Consensus       215 l~~aGf~~~~~~~~~  229 (239)
                      ++++||+++++...+
T Consensus       240 l~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          240 AQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHTTEEEEEEEEEC
T ss_pred             HHHcCCEEEEEEEcc
Confidence            999999999988765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.06  E-value=1.3e-10  Score=93.34  Aligned_cols=117  Identities=8%  Similarity=-0.106  Sum_probs=78.9

Q ss_pred             CCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC-c-ceeeechhhh
Q 045543          106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN-G-DAILMKLILR  143 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH  143 (239)
                      ..+..+|||||||+|.                                       +.+|+.+ +++. . |+|++.+++|
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  100 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF  100 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence            4456899999999998                                       2345544 4443 3 9999999999


Q ss_pred             cCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh-hhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543          144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE-ASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       144 ~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~-~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                      +++.++..++|+++++.|+|||++++.+...++.......... ..+..+...... .+..++.+|+  .++++++||..
T Consensus       101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~--~~~~~~~g~~~  177 (209)
T 2p8j_A          101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKV-IHSYVSLEEA--DKYFKDMKVLF  177 (209)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCE-EEEEECHHHH--HHTTTTSEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCce-eEEecCHHHH--HHHHhhcCcee
Confidence            9988888999999999999999999998875543211000000 000000000000 1245688899  99999999877


Q ss_pred             eeE
Q 045543          223 VNY  225 (239)
Q Consensus       223 ~~~  225 (239)
                      .+.
T Consensus       178 ~~~  180 (209)
T 2p8j_A          178 KED  180 (209)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.05  E-value=4.6e-10  Score=99.36  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|++..++|+++|.  ..+|+++++.|+|||+|++.+...+.....    .  ...+...+... .+..++.++|  .+
T Consensus       168 D~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~-~~~~~~~~~~--~~  236 (383)
T 4fsd_A          168 DIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE----A--AQQDPILYGEC-LGGALYLEDF--RR  236 (383)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH----H--HHHCHHHHHTT-CTTCCBHHHH--HH
T ss_pred             EEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH----h--HhhhHHHhhcc-cccCCCHHHH--HH
Confidence            999999999999875  599999999999999999998776543211    1  11122222222 4566788999  99


Q ss_pred             HHhhCCCceeeEEE
Q 045543          214 LTAKNGFKGVNYES  227 (239)
Q Consensus       214 ll~~aGf~~~~~~~  227 (239)
                      +|+++||+.+++..
T Consensus       237 ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          237 LVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHTTCCCEEEEE
T ss_pred             HHHHCCCceEEEEe
Confidence            99999999886644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.04  E-value=3.2e-10  Score=92.00  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH-
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM-  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~-  212 (239)
                      |+|++.+++|++++++...+|+++++.|+|||.+++........       .+.. +....+........++.+++  . 
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~l--~~  173 (217)
T 3jwh_A          104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFAN-LPAGKLRHKDHRFEWTRSQF--QN  173 (217)
T ss_dssp             SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHH--HH
T ss_pred             CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhcc-cccccccccccccccCHHHH--HH
Confidence            99999999999999988999999999999999776654421000       0000 00000000112334688888  7 


Q ss_pred             ---HHHhhCCCceee
Q 045543          213 ---ALTAKNGFKGVN  224 (239)
Q Consensus       213 ---~ll~~aGf~~~~  224 (239)
                         ++++++||++.-
T Consensus       174 ~~~~~~~~~Gf~v~~  188 (217)
T 3jwh_A          174 WANKITERFAYNVQF  188 (217)
T ss_dssp             HHHHHHHHSSEEEEE
T ss_pred             HHHHHHHHcCceEEE
Confidence               889999998643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.03  E-value=6.5e-10  Score=89.75  Aligned_cols=74  Identities=4%  Similarity=-0.107  Sum_probs=54.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|+.+.++|++++++..++++++++.|+|||+++++....+.....                 . .....+.+|+  .+
T Consensus       103 D~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~-----------------~-~~~~~~~~el--~~  162 (203)
T 1pjz_A          103 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE-----------------G-PPFSVPQTWL--HR  162 (203)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS-----------------S-CCCCCCHHHH--HH
T ss_pred             EEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccC-----------------C-CCCCCCHHHH--HH
Confidence            99999999999998888899999999999999955554333211000                 0 0112578899  99


Q ss_pred             HHhhCCCceeeEEEc
Q 045543          214 LTAKNGFKGVNYESF  228 (239)
Q Consensus       214 ll~~aGf~~~~~~~~  228 (239)
                      ++++ ||++..+...
T Consensus       163 ~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          163 VMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             TSCS-SEEEEEEEES
T ss_pred             HhcC-CcEEEEeccc
Confidence            9998 9998777654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.02  E-value=1.9e-09  Score=90.31  Aligned_cols=127  Identities=9%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-------------------C------------------------------ccc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------C------------------------------GWK-M  126 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------~------------------------------~gD-~  126 (239)
                      ..+++.++ +.+..+|||||||+|.                   .                              .+| +
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            45667776 7788899999999998                   1                              122 3


Q ss_pred             cc---ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC--
Q 045543          127 FQ---KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS--  199 (239)
Q Consensus       127 ~~---~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~--  199 (239)
                      +.   +++. . |+|++.+++|++++..  .+++.++..++|||++++.+...+..................+.....  
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD  189 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred             hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence            22   2233 3 9999999999999875  478888888888999999998776542211000000011111100000  


Q ss_pred             -C--ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          200 -G--EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       200 -~--g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                       .  ...+|.+++  .++++++||+++++..+
T Consensus       190 ~~~~~~~~s~~~l--~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          190 VANIRTLITPDTL--AQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             TCSCCCCCCHHHH--HHHHHHHTCEEEECCCB
T ss_pred             cccccccCCHHHH--HHHHHHCCCeeEEEEEe
Confidence             1  135689999  99999999999887665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.01  E-value=7.1e-10  Score=92.00  Aligned_cols=117  Identities=12%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAIL  137 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~  137 (239)
                      ..+++.++ ..+..+|||||||+|.                                    +.+|+.+ + +. . |+|+
T Consensus        23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence            45666666 6677899999999998                                    3345544 3 33 3 9999


Q ss_pred             echhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhc-c-----CCccccChhhccH
Q 045543          138 MKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQ-L-----SGEKERTKQEYYG  211 (239)
Q Consensus       138 l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~-~-----~~g~~rt~~e~~~  211 (239)
                      +.+++|+++|.  ..+|+++++.|+|||++++.......   .+.............+.. .     .....++.++|  
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  173 (259)
T 2p35_A          101 ANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQ---EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY--  173 (259)
T ss_dssp             EESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTT---SHHHHHHHHHHHHSTTGGGC-------CCCCCHHHH--
T ss_pred             EeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCC---cHHHHHHHHHhcCcchHHHhccccccccCCCCHHHH--
Confidence            99999999764  58999999999999999998753211   110000000000000000 0     02245688999  


Q ss_pred             HHHHhhCCCce
Q 045543          212 MALTAKNGFKG  222 (239)
Q Consensus       212 ~~ll~~aGf~~  222 (239)
                      .++|+++||++
T Consensus       174 ~~~l~~aGf~v  184 (259)
T 2p35_A          174 FNALSPKSSRV  184 (259)
T ss_dssp             HHHHGGGEEEE
T ss_pred             HHHHHhcCCce
Confidence            99999999974

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.99  E-value=1.4e-09  Score=91.98  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      ..+++.++ ..+..+|||||||+|.                                      +.+|+.+ +.+.. |+|
T Consensus       110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i  188 (286)
T 3m70_A          110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI  188 (286)
T ss_dssp             HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred             HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence            45666666 5577899999999998                                      3456655 23333 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHh
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTA  216 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~  216 (239)
                      ++..++|++++++...+|+++++.|+|||+++|+.....+....+                .......+.+++  .++++
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l--~~~~~  250 (286)
T 3m70_A          189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENEL--KEYYK  250 (286)
T ss_dssp             EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHH--HHHTT
T ss_pred             EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHH--HHHhc
Confidence            999999999999999999999999999999888776554432111                001233567777  88886


Q ss_pred             hCCCceeeEE
Q 045543          217 KNGFKGVNYE  226 (239)
Q Consensus       217 ~aGf~~~~~~  226 (239)
                      .  |+++...
T Consensus       251 ~--~~~~~~~  258 (286)
T 3m70_A          251 D--WEFLEYN  258 (286)
T ss_dssp             T--SEEEEEE
T ss_pred             C--CEEEEEE
Confidence            5  8877653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.98  E-value=1.1e-09  Score=93.10  Aligned_cols=79  Identities=19%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC---ccccChhhcc
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG---EKERTKQEYY  210 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~---g~~rt~~e~~  210 (239)
                      |+|++.++||+++|..  +.|+++++.|+|||+++|.+... +   ..+.    ..+.- .+...+.   ...++.++| 
T Consensus       137 D~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~-~---~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~-  204 (292)
T 2aot_A          137 DFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSG-S---SGWD----KLWKK-YGSRFPQDDLCQYITSDDL-  204 (292)
T ss_dssp             EEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECT-T---SHHH----HHHHH-HGGGSCCCTTCCCCCHHHH-
T ss_pred             eEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecC-C---ccHH----HHHHH-HHHhccCCCcccCCCHHHH-
Confidence            9999999999999864  78999999999999999986431 1   1111    11110 1111111   234688999 


Q ss_pred             HHHHHhhCCCceeeE
Q 045543          211 GMALTAKNGFKGVNY  225 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~  225 (239)
                       .++|+++||++++.
T Consensus       205 -~~~l~~aGf~~~~~  218 (292)
T 2aot_A          205 -TQMLDNLGLKYECY  218 (292)
T ss_dssp             -HHHHHHHTCCEEEE
T ss_pred             -HHHHHHCCCceEEE
Confidence             99999999998764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.95  E-value=4.1e-10  Score=95.43  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------Ccccccc-c---
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-K---  129 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~---  129 (239)
                      ..+.+.++ ..+..+|||||||+|.                                           ..+|+.+ +   
T Consensus        47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           47 AWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            34444444 4567899999999999                                           1245544 3   


Q ss_pred             cCC-c-ceeeec-hhhhcCCh-----hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          130 ILN-G-DAILMK-LILRNWDD-----EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       130 ~p~-~-D~~~l~-~vlH~~~d-----~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ++. . |+|++. +++|++++     ++..++|+++++.|+|||++++...
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            343 3 999998 99999998     7788999999999999999998754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.95  E-value=1.5e-09  Score=91.07  Aligned_cols=91  Identities=12%  Similarity=0.004  Sum_probs=62.8

Q ss_pred             cceeeechhhhcC-C-hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhcc
Q 045543          133 GDAILMKLILRNW-D-DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYY  210 (239)
Q Consensus       133 ~D~~~l~~vlH~~-~-d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~  210 (239)
                      .|+|+++.+||+. + .++-.++|+++++.|||||+|++.+......        +  ...-.   .. .....+.+++ 
T Consensus       157 fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--------~--~~g~~---~~-~~~~~~~~~l-  221 (263)
T 2a14_A          157 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS--------Y--MVGKR---EF-SCVALEKGEV-  221 (263)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------E--EETTE---EE-ECCCCCHHHH-
T ss_pred             CCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------c--eeCCe---Ee-eccccCHHHH-
Confidence            3999999999974 2 3566799999999999999999987542110        0  00000   00 1123588999 


Q ss_pred             HHHHHhhCCCceeeEEEcC----------CceeEEEEEC
Q 045543          211 GMALTAKNGFKGVNYESFV----------CNFYIMEFIK  239 (239)
Q Consensus       211 ~~~ll~~aGf~~~~~~~~~----------~~~~vie~~k  239 (239)
                       .++|+++||+++++...+          ....++.|+|
T Consensus       222 -~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K  259 (263)
T 2a14_A          222 -EQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK  259 (263)
T ss_dssp             -HHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred             -HHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence             999999999998886542          1345666765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.90  E-value=1.5e-09  Score=91.85  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-cc-CC-c-ceeeech
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KI-LN-G-DAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~-p~-~-D~~~l~~  140 (239)
                      ..+..+|||||||+|.                                         +.+|+.+ ++ +. . |+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            3566899999999997                                         2345555 44 33 3 9999999


Q ss_pred             hhhc--CChhHHHHHHHHHHhhCCCCceEEEEeeecCCC--------CCCChh----------hh-hhhhhhHHHhhcc-
Q 045543          141 ILRN--WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI--------PEATPA----------TR-EASSIDIIMLMQL-  198 (239)
Q Consensus       141 vlH~--~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~--------~~~~~~----------~~-~~~~~dl~ml~~~-  198 (239)
                      ++|+  .+.++...+|+++++.|+|||++++........        -..+..          .. ........+.... 
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  221 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN  221 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence            9998  677788999999999999999999976532100        000000          00 0000000000000 


Q ss_pred             -CCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          199 -SGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       199 -~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                       .....++.+++  .++|+++||+++++...
T Consensus       222 ~~~~~~~~~~~l--~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          222 NCIEYFVDFTRM--VDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             SEEEECCCHHHH--HHHHHTTTEEEEEEEEH
T ss_pred             CCcccccCHHHH--HHHHHHcCCEEEEecCH
Confidence             01244588999  99999999999988764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.89  E-value=1.9e-08  Score=83.16  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      ..++.... ..+..+|||||||+|.                                      +.+|+.+ +.+.. |+|
T Consensus        31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v  109 (252)
T 1wzn_A           31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV  109 (252)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE
T ss_pred             HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEE
Confidence            34444444 4566899999999998                                      3456655 34444 999


Q ss_pred             eec-hhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          137 LMK-LILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       137 ~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ++. ..+|.+++++...+|+++++.|+|||++++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            886 5677788888899999999999999998763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.87  E-value=2.5e-09  Score=90.61  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++..+||+.+++  +-.++|+++++.|+|||+|++.+......        +.. -+.    .. ....++.++|  
T Consensus       176 D~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~--------~~~-~~~----~~-~~~~~~~~~l--  239 (289)
T 2g72_A          176 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW--------YLA-GEA----RL-TVVPVSEEEV--  239 (289)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------EEE-TTE----EE-ECCCCCHHHH--
T ss_pred             CEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------EEc-CCe----ee-eeccCCHHHH--
Confidence            999999999986543  66799999999999999999986432110        000 000    00 1234589999  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      .++|+++||+++++...
T Consensus       240 ~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          240 REALVRSGYKVRDLRTY  256 (289)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHcCCeEEEeeEe
Confidence            99999999999887653

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.86  E-value=1.2e-08  Score=84.79  Aligned_cols=90  Identities=12%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             ceeeechhhhcCCh--hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDD--EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d--~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++..+||..++  ++...+|+++++.|+|||+|++.+......        +.. -+.    .. .....+.+++  
T Consensus       159 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~~~-~~~----~~-~~~~~~~~~~--  222 (265)
T 2i62_A          159 DCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------YMI-GEQ----KF-SSLPLGWETV--  222 (265)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------EEE-TTE----EE-ECCCCCHHHH--
T ss_pred             cEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------EEc-CCc----cc-cccccCHHHH--
Confidence            99999999995543  366799999999999999999988432210        000 000    00 1123577899  


Q ss_pred             HHHHhhCCCceeeEEEcCC----------ceeEEEEEC
Q 045543          212 MALTAKNGFKGVNYESFVC----------NFYIMEFIK  239 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~~~----------~~~vie~~k  239 (239)
                      .++|+++||+++++...+.          ...++.++|
T Consensus       223 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K  260 (265)
T 2i62_A          223 RDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK  260 (265)
T ss_dssp             HHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred             HHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence            9999999999998876531          344666765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.85  E-value=1.2e-08  Score=81.52  Aligned_cols=98  Identities=8%  Similarity=0.079  Sum_probs=69.6

Q ss_pred             eEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhH
Q 045543          111 QLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEH  149 (239)
Q Consensus       111 ~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~  149 (239)
                      +|||||||+|.                                      +.+|+.+ +++. . |+|++.  +++++.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~  109 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL  109 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence            99999999998                                      3456655 4443 3 999984  34567778


Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ...+|+++++.|+|||++++.+.......       +.....      ......++.+++  .++|+  ||+++++..
T Consensus       110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~l--~~~l~--Gf~v~~~~~  170 (202)
T 2kw5_A          110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YNTGGP------KDLDLLPKLETL--QSELP--SLNWLIANN  170 (202)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GTSCCS------SSGGGCCCHHHH--HHHCS--SSCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecccccc-------CCCCCC------CcceeecCHHHH--HHHhc--CceEEEEEE
Confidence            89999999999999999999876533210       000000      001235799999  99999  999988754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.83  E-value=1.5e-08  Score=79.37  Aligned_cols=91  Identities=12%  Similarity=0.083  Sum_probs=68.9

Q ss_pred             CCCcceEEEeCCCCCC---------------------Ccccccc-cc---CC-c-ceeeechhhhcC-ChhHHHHHHHHH
Q 045543          106 FEKIKQLVDVGGGCGK---------------------CGWKMFQ-KI---LN-G-DAILMKLILRNW-DDEHCLSLLKNC  157 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------~~gD~~~-~~---p~-~-D~~~l~~vlH~~-~d~~~~~iL~~~  157 (239)
                      ..+..+|||||||...                     +.+|+.+ +.   +. . |+|++.+++|++ +|.  ..+|+++
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~   87 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEI   87 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHH
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHH
Confidence            5677899999999765                     3455544 33   43 3 999999999998 665  6899999


Q ss_pred             HhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCC
Q 045543          158 YEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGF  220 (239)
Q Consensus       158 ~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf  220 (239)
                      ++.|+|||++++.+........                    ....++.++|  .++|+++||
T Consensus        88 ~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~l~~aGf  128 (176)
T 2ld4_A           88 ARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKL--CSALTLSGL  128 (176)
T ss_dssp             HHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHH--HHHHHHTTC
T ss_pred             HHHCCCCEEEEEEccccccccc--------------------ccccCCHHHH--HHHHHHCCC
Confidence            9999999999997654332110                    1123688999  999999999

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.82  E-value=5.1e-09  Score=84.08  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=74.5

Q ss_pred             CCcceEEEeCCCCCC----------------------------------------CccccccccCCc-ceeeechhhhcC
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILNG-DAILMKLILRNW  145 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~  145 (239)
                      .+..+|||||||+|.                                        +.+|+.+..+.. |+|++...+|+ 
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH-
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH-
Confidence            456899999999998                                        334554433334 99999888765 


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeE
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNY  225 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~  225 (239)
                          ...+++++++.|+|||++++.+....                             +.+++  .++++++||+++++
T Consensus       138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~--~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          138 ----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKI--EQALAENSFQIDLK  182 (205)
T ss_dssp             ----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHH--HHHHHHTTEEEEEE
T ss_pred             ----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHH--HHHHHHcCCceEEe
Confidence                36889999999999999999654321                             34566  88899999999998


Q ss_pred             EEcCCceeEEEEEC
Q 045543          226 ESFVCNFYIMEFIK  239 (239)
Q Consensus       226 ~~~~~~~~vie~~k  239 (239)
                      .......+++.-+|
T Consensus       183 ~~~~~w~~~~~~~~  196 (205)
T 3grz_A          183 MRAGRWIGLAISRK  196 (205)
T ss_dssp             EEETTEEEEEEEEC
T ss_pred             eccCCEEEEEEecc
Confidence            88877788877654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.80  E-value=2.8e-08  Score=83.95  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             eeeechhhhcCChhH-HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          135 AILMKLILRNWDDEH-CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~-~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      ++++..+||..+|++ ...+|++++++|+|||+|++.+...+..+.     ......+..-..-. ....||.+|+  .+
T Consensus       163 av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~-p~~~rs~~ei--~~  234 (277)
T 3giw_A          163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAARNM-PMRLRTHAEA--EE  234 (277)
T ss_dssp             EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHTTC-CCCCCCHHHH--HH
T ss_pred             hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhcCC-CCccCCHHHH--HH
Confidence            688999999999876 579999999999999999998876542211     11122222211111 3466899999  99


Q ss_pred             HHhhCCCceee
Q 045543          214 LTAKNGFKGVN  224 (239)
Q Consensus       214 ll~~aGf~~~~  224 (239)
                      +|.  ||++++
T Consensus       235 ~f~--Glelve  243 (277)
T 3giw_A          235 FFE--GLELVE  243 (277)
T ss_dssp             TTT--TSEECT
T ss_pred             HhC--CCcccC
Confidence            995  999765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.79  E-value=2.1e-09  Score=91.60  Aligned_cols=85  Identities=12%  Similarity=0.194  Sum_probs=55.0

Q ss_pred             ceeeechhhhc----CChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhc
Q 045543          134 DAILMKLILRN----WDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEY  209 (239)
Q Consensus       134 D~~~l~~vlH~----~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~  209 (239)
                      |+|++..++|.    |+++...++|+++++.|+|||+|++............  .........     + .......+++
T Consensus       179 D~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~--~~~~~~~~~-----~-~~~~~~p~~~  250 (292)
T 3g07_A          179 DVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRK--TLTETIYKN-----Y-YRIQLKPEQF  250 (292)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTT--TSCHHHHHH-----H-HHCCCCGGGH
T ss_pred             CEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhh--cccHHHHhh-----h-hcEEEcHHHH
Confidence            99999999844    4888999999999999999999988533221100000  000011110     1 1223457899


Q ss_pred             cHHHHHhh--CCCceeeEEEc
Q 045543          210 YGMALTAK--NGFKGVNYESF  228 (239)
Q Consensus       210 ~~~~ll~~--aGf~~~~~~~~  228 (239)
                        .++|.+  +||+.++++..
T Consensus       251 --~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          251 --SSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             --HHHHTSTTTCCCEEEEC--
T ss_pred             --HHHHHhcCCCceEEEEecc
Confidence              999999  99998887654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.76  E-value=1.1e-08  Score=82.59  Aligned_cols=67  Identities=13%  Similarity=0.222  Sum_probs=54.7

Q ss_pred             CCCcceEEEeCCCCCC-------------------------------------CccccccccCC-c-ceeeechhhhcCC
Q 045543          106 FEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKILN-G-DAILMKLILRNWD  146 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~  146 (239)
                      ..+..+|||||||+|.                                     +.+|+.+..+. . |+|++.+++|+++
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence            5667899999999999                                     34555552233 3 9999999999998


Q ss_pred             h-hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          147 D-EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       147 d-~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      + ++..++|+++++.|+|||++++...
T Consensus       129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            6 5667999999999999999998664

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.76  E-value=2.6e-08  Score=83.30  Aligned_cols=83  Identities=10%  Similarity=-0.098  Sum_probs=59.2

Q ss_pred             ccccc-ccC--Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccC
Q 045543          124 WKMFQ-KIL--NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLS  199 (239)
Q Consensus       124 gD~~~-~~p--~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~  199 (239)
                      +|+++ +.+  .. |+|+.+.+||.+++++..++++++++.|+|||+++++....+.....                 . 
T Consensus       140 ~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~-----------------g-  201 (252)
T 2gb4_A          140 CSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA-----------------G-  201 (252)
T ss_dssp             SCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC-----------------C-
T ss_pred             CccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC-----------------C-
Confidence            35555 332  23 99999999999998888899999999999999998765543321100                 0 


Q ss_pred             CccccChhhccHHHHHhhCCCceeeEEE
Q 045543          200 GEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       200 ~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      .....+.+|+  .++++. +|+++....
T Consensus       202 ~~~~~~~~el--~~~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          202 PPFYVPSAEL--KRLFGT-KCSMQCLEE  226 (252)
T ss_dssp             SSCCCCHHHH--HHHHTT-TEEEEEEEE
T ss_pred             CCCCCCHHHH--HHHhhC-CeEEEEEec
Confidence            0012578899  999988 599877654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.75  E-value=8e-09  Score=86.69  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             CcceEEEeCCCCCC---------------------------------Ccccccc-ccCCc--ceeeechhhhcCChhHHH
Q 045543          108 KIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILNG--DAILMKLILRNWDDEHCL  151 (239)
Q Consensus       108 ~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~  151 (239)
                      ...+|||||||+|.                                 +.+|+.+ ++|.+  |+|++..++|.++.+   
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~---  115 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD---  115 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence            45789999999999                                 3455544 56653  999999999877543   


Q ss_pred             HHHHHHHhhCCCCceEEEEeeecC
Q 045543          152 SLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      +.++++++.|||||+|+++.+..+
T Consensus       116 ~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          116 RFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEEEECCCC
Confidence            689999999999999999887543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.74  E-value=2.4e-08  Score=81.87  Aligned_cols=111  Identities=16%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             HhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-----ccCCc-c
Q 045543          100 LDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-----KILNG-D  134 (239)
Q Consensus       100 ~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-----~~p~~-D  134 (239)
                      ++.++ +.+..+|||+|||+|.                                       +.+|+.+     +++.. |
T Consensus        67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D  145 (230)
T 1fbn_A           67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD  145 (230)
T ss_dssp             CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred             ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence            33444 6677899999999998                                       2344433     11223 8


Q ss_pred             eeeechhhhcCChh-HHHHHHHHHHhhCCCCceEEEEeeecCC-CCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          135 AILMKLILRNWDDE-HCLSLLKNCYEAIPGNGKIIIIDSTTVV-IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       135 ~~~l~~vlH~~~d~-~~~~iL~~~~~aL~pgg~lli~d~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                      +|+     |+.++. ....+|+++++.|+|||++++. ..... +...+          ..         ....+++  .
T Consensus       146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~----------~~---------~~~~~~l--~  198 (230)
T 1fbn_A          146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD----------PK---------EIFKEQK--E  198 (230)
T ss_dssp             EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC----------HH---------HHHHHHH--H
T ss_pred             EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC----------HH---------HhhHHHH--H
Confidence            877     666544 4467799999999999999997 22111 11111          00         0112566  7


Q ss_pred             HHHhhCCCceeeEEEcCC---ceeEEEEEC
Q 045543          213 ALTAKNGFKGVNYESFVC---NFYIMEFIK  239 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~~~---~~~vie~~k  239 (239)
                       +|+++||+.++...+..   .+.++.++|
T Consensus       199 -~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          199 -ILEAGGFKIVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             -HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred             -HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence             89999999999887754   377777764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.70  E-value=3e-08  Score=79.72  Aligned_cols=107  Identities=15%  Similarity=0.069  Sum_probs=69.9

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC--------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------CGWKMFQ-KILN-G-DAILMKLIL  142 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------~~gD~~~-~~p~-~-D~~~l~~vl  142 (239)
                      .++..+.  .+..+|||||||+|.                                +.+|+.+ +++. . |+|++.+++
T Consensus        28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  105 (211)
T 2gs9_A           28 RALKGLL--PPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTL  105 (211)
T ss_dssp             HHHHTTC--CCCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred             HHHHHhc--CCCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence            3444443  266899999999996                                2344444 4444 3 999999999


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhh--ccCCccccChhhccHHHHHhhCC
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLM--QLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~--~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      |++++.  .++|+++++.|+|||++++.+.....    ++..   ....+....  .....+.+|.+++  +++|+  |
T Consensus       106 ~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~s~~~l--~~~l~--G  171 (211)
T 2gs9_A          106 EFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----PWAA---LYRRLGEKGVLPWAQARFLAREDL--KALLG--P  171 (211)
T ss_dssp             TTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----HHHH---HHHHHHHTTCTTGGGCCCCCHHHH--HHHHC--S
T ss_pred             hhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----cHHH---HHHHHhhccCccccccccCCHHHH--HHHhc--C
Confidence            999865  58999999999999999998753221    1100   011110000  0012345799999  99999  7

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.69  E-value=2.3e-08  Score=84.04  Aligned_cols=75  Identities=8%  Similarity=0.057  Sum_probs=59.7

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC---------------------------------Ccccccc-cc------CCc-
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KI------LNG-  133 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~------p~~-  133 (239)
                      ....+++.++ ..+..+|||||||+|.                                 +.+|+.+ +.      +.. 
T Consensus        33 ~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           33 DRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence            3456677776 7788999999999998                                 2233332 22      223 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++..++|+++.++....|+++++.| |||+|++.-
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            9999999999999999999999999999 999999864

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.66  E-value=4.3e-08  Score=83.36  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |+|++..++|++ +  ...+|+++++.|+|||+|++.++.
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence            999999999999 3  469999999999999999996654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.60  E-value=1.2e-07  Score=74.56  Aligned_cols=109  Identities=15%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------C--------ccccccccCC-c-
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------C--------GWKMFQKILN-G-  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~--------~gD~~~~~p~-~-  133 (239)
                      ..+++.++ ..+..+|||+|||+|.                                 .        .+|+.+..+. . 
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  120 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY  120 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCc
Confidence            45566666 6677899999999997                                 1        1344443333 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|++...+| +..+....+++++++.|+|||++++.......                             ..++  .+
T Consensus       121 D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~--~~  168 (194)
T 1dus_A          121 NKIITNPPIR-AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSL--AK  168 (194)
T ss_dssp             EEEEECCCST-TCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHH--HH
T ss_pred             eEEEECCCcc-cchhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHH--HH
Confidence            9999988887 34566789999999999999999997653110                             0134  55


Q ss_pred             HHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          214 LTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       214 ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      ++++. |..+++........++.++|
T Consensus       169 ~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          169 YMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHHHH-hcceEEEecCCcEEEEEEee
Confidence            56665 55566666666677777765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.59  E-value=2e-07  Score=72.91  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             CCcceEEEeCCCCCC-----------------------------CccccccccCC-c-ceeeechhhhcCChh-------
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------CGWKMFQKILN-G-DAILMKLILRNWDDE-------  148 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~~d~-------  148 (239)
                      .+..+|||+|||+|.                             +.+|++++++. . |++++...+|..++.       
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~  101 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGY  101 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBCCG
T ss_pred             CCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccCCc
Confidence            345699999999998                             44677665553 3 999999888865544       


Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +...+++++.+.+ |||++++.+...                             .+.+++  .++++++||+.+.+...
T Consensus       102 ~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l--~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          102 LGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEV--LARLEERGYGTRILKVR  149 (170)
T ss_dssp             GGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHH--HHHHHHTTCEEEEEEEE
T ss_pred             chHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHH--HHHHHHCCCcEEEEEee
Confidence            4567899999999 999999876311                             134567  88899999998887665

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.58  E-value=3.7e-07  Score=76.77  Aligned_cols=101  Identities=13%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeec----
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMK----  139 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~----  139 (239)
                      .+..+|||+|||+|.                                         +.+|++++++. . |+|++.    
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            345799999999998                                         45677765543 3 999987    


Q ss_pred             ---------hhhhcCCh----------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          140 ---------LILRNWDD----------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       140 ---------~vlH~~~d----------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                               .++++.+.          +....+++++++.|+|||++++..        +                    
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~--------~--------------------  239 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH--------G--------------------  239 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC--------C--------------------
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE--------C--------------------
Confidence                     45554442          456899999999999999998841        0                    


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc-CCceeEEEEEC
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF-VCNFYIMEFIK  239 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~-~~~~~vie~~k  239 (239)
                        ..+.+++  .++++++||+.+++..- .+...++.++|
T Consensus       240 --~~~~~~~--~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          240 --WQQGEAV--RQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             --SSCHHHH--HHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             --chHHHHH--HHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence              0134667  89999999998887654 45666776664

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.56  E-value=1.7e-07  Score=80.19  Aligned_cols=39  Identities=18%  Similarity=0.186  Sum_probs=34.7

Q ss_pred             ceeeechhhhcC--ChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNW--DDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++..++|..  +.++...+|++++++|+|||++++...
T Consensus       116 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          116 DICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             EEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            999999999986  446678999999999999999998765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.56  E-value=6.8e-08  Score=79.79  Aligned_cols=110  Identities=7%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             hccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc--ccC---C-cce
Q 045543          102 YYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ--KIL---N-GDA  135 (239)
Q Consensus       102 ~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~--~~p---~-~D~  135 (239)
                      .++ +++..+|||+|||+|.                                        +.+|...  ..|   . .|+
T Consensus        72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv  150 (233)
T 4df3_A           72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG  150 (233)
T ss_dssp             CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred             hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence            344 7788999999999998                                        2223222  111   1 277


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      +++.  ++..  ++...++++++++|||||+++|.......+...+                   .. ...++.  .+.|
T Consensus       151 Vf~d--~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p-------------------~~-~~~~~e--v~~L  204 (233)
T 4df3_A          151 LYAD--VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE-------------------PS-EVYKRE--IKTL  204 (233)
T ss_dssp             EEEC--CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTC-------------------CC-HHHHHH--HHHH
T ss_pred             EEEe--ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCC-------------------hH-HHHHHH--HHHH
Confidence            7643  2222  2346889999999999999999753221111000                   00 112334  6678


Q ss_pred             hhCCCceeeEEEcCC---ceeEEEEE
Q 045543          216 AKNGFKGVNYESFVC---NFYIMEFI  238 (239)
Q Consensus       216 ~~aGf~~~~~~~~~~---~~~vie~~  238 (239)
                      +++||++++...+..   .|.++.++
T Consensus       205 ~~~GF~l~e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          205 MDGGLEIKDVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             HHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred             HHCCCEEEEEEccCCCCCceEEEEEE
Confidence            899999999887643   46666654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.55  E-value=2.4e-07  Score=74.11  Aligned_cols=70  Identities=10%  Similarity=0.082  Sum_probs=53.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccC--C-
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL--N-  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p--~-  132 (239)
                      ..+++.++ ..+..+|||||||+|.                                         +.+|+.+.++  . 
T Consensus        30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            34556666 7778999999999998                                         3455555333  2 


Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .|++++...++     +...+++++++.|+|||++++...
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence            39999988876     345899999999999999998643

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.54  E-value=8e-08  Score=85.45  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------------------Cccc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------------CGWK  125 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------------~~gD  125 (239)
                      ...+++.+. +.+..+|+|||||+|.                                                  +.||
T Consensus       162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            445666666 7888999999999999                                                  1356


Q ss_pred             ccc-ccC----CcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC
Q 045543          126 MFQ-KIL----NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP  178 (239)
Q Consensus       126 ~~~-~~p----~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~  178 (239)
                      +++ +++    .+|+|++.+++| +  ++....|+++++.|+|||+|++.|.+.+++.
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            665 442    359999988874 3  3456778999999999999999999887764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.51  E-value=3.1e-08  Score=81.77  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=43.5

Q ss_pred             ceee-----echhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          134 DAIL-----MKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       134 D~~~-----l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      |.++     ....++++.+.  ..+++++++.|||||++++.+.......       .....+        .-.....+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~  192 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEET  192 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHH
T ss_pred             ceEEEeeeecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHH
Confidence            6554     45666666554  5899999999999999987643211100       000000        111122355


Q ss_pred             ccHHHHHhhCCCceeeE
Q 045543          209 YYGMALTAKNGFKGVNY  225 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~  225 (239)
                      +  ...|.++||+...+
T Consensus       193 ~--~~~L~eaGF~~~~i  207 (236)
T 3orh_A          193 Q--VPALLEAGFRRENI  207 (236)
T ss_dssp             T--HHHHHHHTCCGGGE
T ss_pred             H--HHHHHHcCCeEEEE
Confidence            6  77788999997654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.50  E-value=5.5e-08  Score=79.86  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CCcceEEEeCCCCCC---------------------------------------Ccccccc---ccCC-c-ceeee-chh
Q 045543          107 EKIKQLVDVGGGCGK---------------------------------------CGWKMFQ---KILN-G-DAILM-KLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~---------------------------------------~~gD~~~---~~p~-~-D~~~l-~~v  141 (239)
                      .+..+|||||||+|.                                       +.+|+.+   +++. . |+|++ .+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~  138 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence            456799999999998                                       2344433   3444 3 99988 554


Q ss_pred             --hhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          142 --LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       142 --lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                        .|++...+...+|+++++.|+|||++++++..
T Consensus       139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence              55565566678999999999999999987653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.47  E-value=1.4e-07  Score=75.44  Aligned_cols=110  Identities=11%  Similarity=0.047  Sum_probs=65.0

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccC------
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL------  131 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p------  131 (239)
                      .+++.++...+..+|||+|||+|.                                        +.+|++++++      
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   99 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG   99 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence            444444423677899999999998                                        2345544333      


Q ss_pred             C-cceeeec------hhhhcCChhHH------------------HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhh
Q 045543          132 N-GDAILMK------LILRNWDDEHC------------------LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATRE  186 (239)
Q Consensus       132 ~-~D~~~l~------~vlH~~~d~~~------------------~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~  186 (239)
                      . .|+|++.      ..+|.++++..                  ..+++++++.|+|||++++++...            
T Consensus       100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------  167 (215)
T 4dzr_A          100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------  167 (215)
T ss_dssp             CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred             CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence            2 3999984      44444444333                  789999999999999966654311            


Q ss_pred             hhhhhHHHhhccCCccccChhhccHHHHHh--hCCCceeeEEEcC-CceeEEEEE
Q 045543          187 ASSIDIIMLMQLSGEKERTKQEYYGMALTA--KNGFKGVNYESFV-CNFYIMEFI  238 (239)
Q Consensus       187 ~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~--~aGf~~~~~~~~~-~~~~vie~~  238 (239)
                                       ...+++  .++++  ++||..+++.... +...++.++
T Consensus       168 -----------------~~~~~~--~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~  203 (215)
T 4dzr_A          168 -----------------NQADEV--ARLFAPWRERGFRVRKVKDLRGIDRVIAVT  203 (215)
T ss_dssp             -----------------SCHHHH--HHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred             -----------------ccHHHH--HHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence                             122345  66777  7888877776643 334444443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.46  E-value=5.9e-07  Score=73.07  Aligned_cols=107  Identities=12%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Cccccccc-----cCCc-ceeeec
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK-----ILNG-DAILMK  139 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~-----~p~~-D~~~l~  139 (239)
                      +.+..+|||+|||+|.                                        +.+|+.+.     .+.. |+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            5667899999999998                                        33455441     2233 888854


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCC
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNG  219 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aG  219 (239)
                      ..    ..+....+++++++.|+|||++++. .........+         ..         ...+.+++  .++ .++ 
T Consensus       151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~~---------~~~~~~~l--~~l-~~~-  203 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------EP---------EQVFREVE--REL-SEY-  203 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------CH---------HHHHHHHH--HHH-HTT-
T ss_pred             CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------Ch---------hhhhHHHH--HHH-Hhh-
Confidence            33    2333456699999999999999998 3221111110         00         01234566  777 777 


Q ss_pred             CceeeEEEcCCc---eeEEEEEC
Q 045543          220 FKGVNYESFVCN---FYIMEFIK  239 (239)
Q Consensus       220 f~~~~~~~~~~~---~~vie~~k  239 (239)
                      |++++...+...   +.++.++|
T Consensus       204 f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          204 FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             ceeeeEeccCcccCCCEEEEEEe
Confidence            999988877543   77777765

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.46  E-value=1.3e-07  Score=75.65  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=53.5

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ceeeechhhhcC
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNW  145 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~  145 (239)
                      .+..+|||||||+|.                                      +.+|+.+ +++. . |+|++..++|..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence            556899999999998                                      2345554 4443 3 999999999876


Q ss_pred             C-------------hhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          146 D-------------DEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       146 ~-------------d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      .             .++...+|+++++.|+|||++++.++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            5             456789999999999999999998754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.43  E-value=3e-07  Score=76.63  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=68.7

Q ss_pred             CCcceEEEeCCCCCC--------------------------------------CccccccccCC--cceeeechhhhcCC
Q 045543          107 EKIKQLVDVGGGCGK--------------------------------------CGWKMFQKILN--GDAILMKLILRNWD  146 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~--------------------------------------~~gD~~~~~p~--~D~~~l~~vlH~~~  146 (239)
                      .+..+|||+|||+|.                                      ..+|+.+.+|.  .|+|++....|   
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~---  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE---  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH---
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH---
Confidence            456899999999998                                      12333333443  39998765443   


Q ss_pred             hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEE
Q 045543          147 DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYE  226 (239)
Q Consensus       147 d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~  226 (239)
                        ....+++++++.|+|||++++.+....                             +.+++  .++++++||+++++.
T Consensus       196 --~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v--~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          196 --LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLV--REAMAGAGFRPLEEA  242 (254)
T ss_dssp             --HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHH--HHHHHHTTCEEEEEE
T ss_pred             --HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHH--HHHHHHCCCEEEEEe
Confidence              357899999999999999999754321                             24567  899999999999887


Q ss_pred             EcCCceeEEEEEC
Q 045543          227 SFVCNFYIMEFIK  239 (239)
Q Consensus       227 ~~~~~~~vie~~k  239 (239)
                      ......+ +.++|
T Consensus       243 ~~~~W~~-l~~~k  254 (254)
T 2nxc_A          243 AEGEWVL-LAYGR  254 (254)
T ss_dssp             EETTEEE-EEEEC
T ss_pred             ccCCeEE-EEEEC
Confidence            7665544 44544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.41  E-value=1.7e-07  Score=75.71  Aligned_cols=65  Identities=8%  Similarity=0.047  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ..+|+++++.|+|||++++.-....-....+      ...++     ..-...+..+++  .++++++||++.++..+
T Consensus       120 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~l--~~~l~~aGf~i~~~~~~  184 (218)
T 3mq2_A          120 PEMLRGMAAVCRPGASFLVALNLHAWRPSVP------EVGEH-----PEPTPDSADEWL--APRYAEAGWKLADCRYL  184 (218)
T ss_dssp             SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------GGTTC-----CCCCHHHHHHHH--HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEecccccccccc------ccccC-----CccchHHHHHHH--HHHHHHcCCCceeeecc
Confidence            5899999999999999998432211111000      00000     001112233457  88999999999887654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.41  E-value=3.7e-07  Score=70.95  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=51.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------C------ccccccccC---C-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------C------GWKMFQKIL---N-  132 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------~------~gD~~~~~p---~-  132 (239)
                      .+++.++ ..+..+|||||||+|.                                   .      .+|..+.+|   . 
T Consensus        16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSC
T ss_pred             HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCC
Confidence            4455566 6777899999999998                                   1      233333333   2 


Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      .|+|++...+|+      ..+++++++.|+|||++++.+..
T Consensus        95 ~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           95 PDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             CSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             CCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence            399999999987      57899999999999999987643

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.38  E-value=1.5e-07  Score=81.87  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=59.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCCc-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILNG-D  134 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~~-D  134 (239)
                      ...+++.++ .....+|||+|||+|.                                        +.+|+++..+.. |
T Consensus       185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            345666665 4456799999999999                                        345665533334 9


Q ss_pred             eeeechhhhc---CChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          135 AILMKLILRN---WDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       135 ~~~l~~vlH~---~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      +|++..++|.   ++.+...++|+++++.|+|||+++|+..
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            9999999986   4566778999999999999999999765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.37  E-value=4.5e-07  Score=70.99  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCC--c-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN--G-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~--~-D  134 (239)
                      .+++.++ ..+..+|||+|||+|.                                        ..+|+.++++.  . |
T Consensus        24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  102 (192)
T 1l3i_A           24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (192)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCC
Confidence            4445555 6777899999999998                                        12333333442  3 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ++++..++|++     ..+|+++++.|+|||++++...
T Consensus       103 ~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          103 IAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence            99999887654     6889999999999999988653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.37  E-value=2e-07  Score=77.60  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CcceEEEeCCCCCC---------------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHH
Q 045543          108 KIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCL  151 (239)
Q Consensus       108 ~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~  151 (239)
                      +..+|||||||+|.                                 +.+|+.+ +++. . |+|++..+++++.++ ..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~  132 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-KD  132 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-HH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-HH
Confidence            56799999999998                                 2234443 4443 3 999999877766433 67


Q ss_pred             HHHHHHHhhCCCCceEEEEeee
Q 045543          152 SLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      .+|+++++.|+|||++++....
T Consensus       133 ~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          133 KAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHcCCCeEEEEEeCC
Confidence            9999999999999999987653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.35  E-value=6.8e-07  Score=73.10  Aligned_cols=106  Identities=8%  Similarity=0.023  Sum_probs=67.3

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Cccccccc--cC--C-c-ceeeec
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK--IL--N-G-DAILMK  139 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~--~p--~-~-D~~~l~  139 (239)
                      +.+..+|||+|||+|.                                        +.+|+.+.  +|  . . |+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5677899999999997                                        34566542  22  2 3 999873


Q ss_pred             hhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC-CCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543          140 LILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV-IPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN  218 (239)
Q Consensus       140 ~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a  218 (239)
                      ..    ..+....+++++++.|+|||++++ ...... ....+          ...         + ..+.  .++|+++
T Consensus       155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i-~~~~~~~~~~~~----------~~~---------~-~~~~--~~~l~~~  207 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRNGGHFVI-SIKANCIDSTAS----------AEA---------V-FASE--VKKMQQE  207 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEEEEEEEE-EEEHHHHCSSSC----------HHH---------H-HHHH--HHTTGGG
T ss_pred             CC----CccHHHHHHHHHHHHcCCCeEEEE-EEcccccccCCC----------HHH---------H-HHHH--HHHHHHC
Confidence            33    344556789999999999999998 322110 11110          000         0 1122  4668999


Q ss_pred             CCceeeEEEcC---CceeEEEEE
Q 045543          219 GFKGVNYESFV---CNFYIMEFI  238 (239)
Q Consensus       219 Gf~~~~~~~~~---~~~~vie~~  238 (239)
                      ||++++.....   ..+.++.++
T Consensus       208 Gf~~~~~~~~~~~~~~~~~v~~~  230 (233)
T 2ipx_A          208 NMKPQEQLTLEPYERDHAVVVGV  230 (233)
T ss_dssp             TEEEEEEEECTTTSSSEEEEEEE
T ss_pred             CCceEEEEecCCccCCcEEEEEE
Confidence            99999877654   346666665

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.34  E-value=3.7e-07  Score=78.20  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             ceeeechhhhc-CChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRN-WDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~-~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++..++|. |++++..++|+++++.|+|||++++...
T Consensus       131 D~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          131 NIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             EEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999999996 4555568999999999999999988665

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.29  E-value=7.4e-07  Score=73.03  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      ..+|+++++.|+|||+++++..+... ....  . + ...+..   .. .......+|+  .++++++||++..+...+
T Consensus       119 ~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~--~-~-~~~~~~---~~-~~~~~~~~el--~~~l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          119 RDILSNVADLAKKEAHFEFVTTYSDS-YEEA--E-I-KKRGLP---LL-SKAYFLSEQY--KAELSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHH--HHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecccc-chhc--h-h-hhcCCC---CC-ChhhcchHHH--HHHHHHcCCCeeeeeecC
Confidence            36899999999999999994433222 1110  0 0 000000   00 0111122358  999999999998876543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.26  E-value=2e-06  Score=69.92  Aligned_cols=93  Identities=12%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             CCCcceEEEeCCC-CCC---------------------------------------Ccccc--ccccCC-c-ceeeechh
Q 045543          106 FEKIKQLVDVGGG-CGK---------------------------------------CGWKM--FQKILN-G-DAILMKLI  141 (239)
Q Consensus       106 ~~~~~~vlDvGGG-~G~---------------------------------------~~gD~--~~~~p~-~-D~~~l~~v  141 (239)
                      ..+..+|||+||| +|.                                       +.+|+  +.+++. . |+|++.-.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            4567899999999 998                                       34553  334553 3 99998766


Q ss_pred             hhcCChhH-----------------HHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCcccc
Q 045543          142 LRNWDDEH-----------------CLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKER  204 (239)
Q Consensus       142 lH~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~r  204 (239)
                      +|..++.+                 ...+|+++.+.|+|||+++++-..   .                         ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~-------------------------~~  184 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---K-------------------------EK  184 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---C-------------------------HH
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---c-------------------------Hh
Confidence            65544322                 378999999999999999985211   0                         01


Q ss_pred             ChhhccHHHHHhhCCCceeeEEEc
Q 045543          205 TKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       205 t~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +.+++  .+++++.||.+..+...
T Consensus       185 ~~~~~--~~~l~~~g~~~~~~~~~  206 (230)
T 3evz_A          185 LLNVI--KERGIKLGYSVKDIKFK  206 (230)
T ss_dssp             HHHHH--HHHHHHTTCEEEEEEEC
T ss_pred             HHHHH--HHHHHHcCCceEEEEec
Confidence            23566  88899999977665443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.25  E-value=2.3e-07  Score=75.68  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=58.3

Q ss_pred             CCcceEEEeCCCCCC----------------------------------Ccccccc--ccC-C-c-ceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------CGWKMFQ--KIL-N-G-DAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------~~gD~~~--~~p-~-~-D~~~l~~vlH~~~d  147 (239)
                      .+..+|||||||+|.                                  +.+|+.+  +++ . . |+|++.      . 
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~-  119 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R-  119 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S-
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C-
Confidence            456899999999998                                  4567755  333 3 3 999886      1 


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                       +...+|+++++.|+|||+++.                              -+...+.+++  .++++++||+..++..
T Consensus       120 -~~~~~l~~~~~~LkpgG~l~~------------------------------~~~~~~~~~~--~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          120 -GPTSVILRLPELAAPDAHFLY------------------------------VGPRLNVPEV--PERLAAVGWDIVAEDH  166 (226)
T ss_dssp             -CCSGGGGGHHHHEEEEEEEEE------------------------------EESSSCCTHH--HHHHHHTTCEEEEEEE
T ss_pred             -CHHHHHHHHHHHcCCCcEEEE------------------------------eCCcCCHHHH--HHHHHHCCCeEEEEEe
Confidence             234789999999999999980                              0111244567  8888889988876653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.24  E-value=2e-06  Score=69.64  Aligned_cols=105  Identities=16%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             CCCcceEEEeCCCCCC---------------------------------------Cccccccc-----cCCc-ceeeech
Q 045543          106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQK-----ILNG-DAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~-----~p~~-D~~~l~~  140 (239)
                      ..+..+|||||||+|.                                       +.+|..++     ++.. |+|++. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence            5667899999999998                                       12344332     2233 998876 


Q ss_pred             hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH--HHHHhhC
Q 045543          141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG--MALTAKN  218 (239)
Q Consensus       141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~--~~ll~~a  218 (239)
                      +.+   .++...+|+++++.|+|||++++.-...+              .|.     .     .+.++.+-  .+.++++
T Consensus       134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~-----~-----~~~~~~~~~~~~~l~~~  186 (210)
T 1nt2_A          134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARS--------------IDS-----T-----AEPEEVFKSVLKEMEGD  186 (210)
T ss_dssp             CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HCT-----T-----SCHHHHHHHHHHHHHTT
T ss_pred             ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCC--------------ccc-----c-----CCHHHHHHHHHHHHHhh
Confidence            332   23445679999999999999999721110              000     0     11222200  2237888


Q ss_pred             CCceeeEEEcC---CceeEEEEEC
Q 045543          219 GFKGVNYESFV---CNFYIMEFIK  239 (239)
Q Consensus       219 Gf~~~~~~~~~---~~~~vie~~k  239 (239)
                       |++++.....   ..+.++.++|
T Consensus       187 -f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          187 -FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             -cEEeeeecCCCCCCCcEEEEEEc
Confidence             9999988773   3567777764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.24  E-value=5.6e-07  Score=71.94  Aligned_cols=63  Identities=10%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------Cc-----cccccccCC-c-ceeeechhhhc
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------CG-----WKMFQKILN-G-DAILMKLILRN  144 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------~~-----gD~~~~~p~-~-D~~~l~~vlH~  144 (239)
                      ....+|||+|||.|.                                   ..     .|..+..|. . |++++.++||.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence            567899999999999                                   22     244443343 3 99999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          145 WDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       145 ~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      . ++ -...+.+++++|+|||.++..+
T Consensus       128 L-~~-~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          128 L-KQ-QDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             H-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred             h-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence            9 33 3566669999999999888877

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.21  E-value=3.8e-06  Score=71.50  Aligned_cols=115  Identities=9%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             HHHHhhccCCC-CcceEEEeCCCCCC-----------------C-------------------cccccc----ccCC--c
Q 045543           97 NRILDYYKGFE-KIKQLVDVGGGCGK-----------------C-------------------GWKMFQ----KILN--G  133 (239)
Q Consensus        97 ~~~~~~~~~~~-~~~~vlDvGGG~G~-----------------~-------------------~gD~~~----~~p~--~  133 (239)
                      ..+++.+. .. ...++||||||+|.                 +                   ..|+..    .+|.  .
T Consensus        74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             HHHHHhcC-CCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence            34555665 44 45799999999998                 0                   112211    2343  3


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCC-hhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT-PATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~-~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                      |++++...+|++     ..+|+.+++.|+|||++++.-  -|+-...+ .........|-.       -..++.+++  .
T Consensus       153 D~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v--~  216 (291)
T 3hp7_A          153 SFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETV--T  216 (291)
T ss_dssp             SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHH--H
T ss_pred             CEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHH--H
Confidence            888888888765     578999999999999999861  11110000 000000001110       012366778  9


Q ss_pred             HHHhhCCCceeeEEEc
Q 045543          213 ALTAKNGFKGVNYESF  228 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~  228 (239)
                      ++++++||++..+...
T Consensus       217 ~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          217 AFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHHHTTEEEEEEEEC
T ss_pred             HHHHHCCCEEEEEEEC
Confidence            9999999999887654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.20  E-value=4.3e-06  Score=68.93  Aligned_cols=117  Identities=14%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             HHHHhhccC--CCCcceEEEeCCCCCC----------------------------------------Cccccccc-----
Q 045543           97 NRILDYYKG--FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQK-----  129 (239)
Q Consensus        97 ~~~~~~~~~--~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~-----  129 (239)
                      ..++..++.  +.+..+|||+|||+|.                                        +.+|...+     
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~  142 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS  142 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence            344444431  6678999999999999                                        23444331     


Q ss_pred             cCC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          130 ILN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       130 ~p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      ++. .|++++.-..   + +....+++++++.|+|||+|++.-....              .|...     .-.+ ..++
T Consensus       143 ~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t~-----~~~e-~~~~  198 (232)
T 3id6_C          143 VVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVTK-----DPKE-IYKT  198 (232)
T ss_dssp             TCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC---------------------C-----CSSS-STTH
T ss_pred             cccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCC--------------cccCC-----CHHH-HHHH
Confidence            122 3888765332   2 2333455667779999999999732111              11110     1111 1233


Q ss_pred             ccHHHHHhhCCCceeeEEEcC---CceeEEEEEC
Q 045543          209 YYGMALTAKNGFKGVNYESFV---CNFYIMEFIK  239 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~~~~---~~~~vie~~k  239 (239)
                      .  ...|+++||++.+...+.   ..+.++.++|
T Consensus       199 ~--~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          199 E--VEKLENSNFETIQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             H--HHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred             H--HHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence            3  667888999999988874   3577777764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.20  E-value=5.8e-06  Score=68.76  Aligned_cols=102  Identities=12%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             CC-CcceEEEeCCCCCC-----------------------------------------Cccccccc---cCC-c-ceeee
Q 045543          106 FE-KIKQLVDVGGGCGK-----------------------------------------CGWKMFQK---ILN-G-DAILM  138 (239)
Q Consensus       106 ~~-~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~---~p~-~-D~~~l  138 (239)
                      .. +..+|||+|||+|.                                         +.+|+.+.   ++. . |+|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            66 77899999999998                                         45666652   333 3 99998


Q ss_pred             chhhhcC------------------ChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          139 KLILRNW------------------DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       139 ~~vlH~~------------------~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                      .--++..                  .......+++.+++.|+|||+++++   .+..                       
T Consensus       126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~---~~~~-----------------------  179 (259)
T 3lpm_A          126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV---HRPE-----------------------  179 (259)
T ss_dssp             CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE---ECTT-----------------------
T ss_pred             CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE---EcHH-----------------------
Confidence            4332211                  1234568999999999999999984   1111                       


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEcC------CceeEEEEEC
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESFV------CNFYIMEFIK  239 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~~------~~~~vie~~k  239 (239)
                          ...++  .+++++.||...++..+.      ....+++++|
T Consensus       180 ----~~~~~--~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          180 ----RLLDI--IDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK  218 (259)
T ss_dssp             ----THHHH--HHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred             ----HHHHH--HHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence                22345  666777788777665531      2356666654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.19  E-value=1.3e-06  Score=76.99  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC--------------------------------------------CccccccccCC-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQKILN-  132 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~~~p~-  132 (239)
                      .+++.++ .....+|+|+|||+|.                                            +.+|++++++. 
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            4566666 4555899999999999                                            34566666664 


Q ss_pred             c-ceeeechhhhc---CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 G-DAILMKLILRN---WDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 ~-D~~~l~~vlH~---~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      . |+|++.-.+|.   .++....++++++++.|+|||+++|+.
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            3 99999988885   456667789999999999999999964

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.19  E-value=8.6e-07  Score=77.32  Aligned_cols=73  Identities=21%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D  134 (239)
                      ..+.+.+. ..+..+|||||||+|.                                        +.+|+.+ +.|.. |
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D  118 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD  118 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence            35555555 5567899999999998                                        2345544 44544 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +|++..++|++..+.....+.++++.|+|||++++.
T Consensus       119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            999999999898887888999999999999999853

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.16  E-value=1.7e-06  Score=71.28  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=39.6

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecCCCCCCC-hhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTVVIPEAT-PATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~-~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ..+|+++++.|+|||++++.-  .+...... .........|-.       ...++.+++  .++++++||++..+...
T Consensus       117 ~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l--~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKV--LKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHH--HHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHH--HHHHHHCCCEEEEEEEc
Confidence            579999999999999999842  11000000 000000000110       112367888  99999999999887654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.14  E-value=1.1e-06  Score=79.95  Aligned_cols=72  Identities=21%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D  134 (239)
                      ..+++.++ ..+..+|||||||+|.                                        +.+|+++ ++|.. |
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD  226 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD  226 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeE
Confidence            45566665 5566899999999998                                        4566666 55554 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +|++..++|++.+++....+.++++.|+|||++++
T Consensus       227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998888999888888999999999999999985

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.11  E-value=4e-06  Score=64.40  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-------------------------------Ccccccc-c--------cCC-c-ce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------CGWKMFQ-K--------ILN-G-DA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------~~gD~~~-~--------~p~-~-D~  135 (239)
                      .+++.+....+..+|||+|||+|.                               +.+|+.+ +        ++. . |+
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~   91 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeE
Confidence            445555434566899999999997                               1345554 3        553 3 99


Q ss_pred             eeechhhhcCChhH---------HHHHHHHHHhhCCCCceEEEEeee
Q 045543          136 ILMKLILRNWDDEH---------CLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       136 ~~l~~vlH~~~d~~---------~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |++...+|...+..         ...+++++++.|+|||++++....
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998888665431         168999999999999999987653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.10  E-value=5.7e-06  Score=79.14  Aligned_cols=38  Identities=5%  Similarity=0.102  Sum_probs=34.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++..++|+++++....+++++++.|+|| .++|...
T Consensus       798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9999999999999999889999999999999 6766554

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.09  E-value=2.3e-06  Score=70.38  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=60.0

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------Ccccccc-cc----CCc-ceeee
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KI----LNG-DAILM  138 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~----p~~-D~~~l  138 (239)
                      +.+..+|||||||+|.                                         +.+|+.+ +.    +.. |+|++
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            4567899999999998                                         3344433 22    223 99998


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN  218 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a  218 (239)
                      ..+    .+  ...+++.+++.|+|||++++.+...     .      ..                ..+++  .+.++++
T Consensus       148 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~-----~------~~----------------~~~~~--~~~l~~~  192 (240)
T 1xdz_A          148 RAV----AR--LSVLSELCLPLVKKNGLFVALKAAS-----A------EE----------------ELNAG--KKAITTL  192 (240)
T ss_dssp             ECC----SC--HHHHHHHHGGGEEEEEEEEEEECC------C------HH----------------HHHHH--HHHHHHT
T ss_pred             ecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCC-----c------hH----------------HHHHH--HHHHHHc
Confidence            774    22  4689999999999999998863110     0      00                12456  7788999


Q ss_pred             CCceeeEEE
Q 045543          219 GFKGVNYES  227 (239)
Q Consensus       219 Gf~~~~~~~  227 (239)
                      ||++.++..
T Consensus       193 g~~~~~~~~  201 (240)
T 1xdz_A          193 GGELENIHS  201 (240)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeEeEEEE
Confidence            999887654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.08  E-value=8.6e-07  Score=73.31  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKILN  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p~  132 (239)
                      +..++..++ ..+..+|||+|||+|.                                           +.+|+.+.++.
T Consensus        82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            445666666 7788999999999998                                           34566665664


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                        .|++++     ++++.  ..+|++++++|+|||++++..
T Consensus       161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEE
Confidence              398886     45544  478999999999999999875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.08  E-value=7.1e-06  Score=64.93  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             CCCcceEEEeCCCCCC-------------------------------------------Ccccccc-c-cC-Cc-ceeee
Q 045543          106 FEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQ-K-IL-NG-DAILM  138 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~-~-~p-~~-D~~~l  138 (239)
                      ..+..+|||+|||+|.                                           +.+|+.+ + .+ .. |++++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4566899999999997                                           3455543 1 22 33 99988


Q ss_pred             chhhh-------cCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          139 KLILR-------NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       139 ~~vlH-------~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      ...+.       ....++...+++++.+.|+|||++++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            76541       1223455689999999999999999987543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.08  E-value=2.6e-06  Score=68.19  Aligned_cols=66  Identities=14%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccC-C-c-c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKIL-N-G-D  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p-~-~-D  134 (239)
                      ..+++.++ ..+..+|||||||+|.                                       +.+|..+..+ . . |
T Consensus        67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCcc
Confidence            34455566 6778899999999998                                       3456655333 2 3 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +|++..++|++++        ++++.|+|||++++.-
T Consensus       146 ~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          146 AIIVTAAPPEIPT--------ALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEESSBCSSCCT--------HHHHTEEEEEEEEEEE
T ss_pred             EEEEccchhhhhH--------HHHHhcccCcEEEEEE
Confidence            9999999999886        4788999999999864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.07  E-value=1.7e-06  Score=72.72  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------C---------ccccccccCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------C---------GWKMFQKILN  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~---------~gD~~~~~p~  132 (239)
                      +..+++.++ +.+..+|||+|||+|.                                  .         .+|+.++++.
T Consensus        99 ~~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  177 (275)
T 1yb2_A           99 ASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  177 (275)
T ss_dssp             -------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence            345666666 7788999999999997                                  1         1334344443


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                        .|+|++     ++++.  ..+|+++++.|+|||++++..
T Consensus       178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          178 QMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             CCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence              398887     44544  488999999999999999976

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.06  E-value=3.7e-06  Score=70.33  Aligned_cols=99  Identities=9%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             CCcceEEEeCCCCCC----------------------------------------CccccccccC-C-cceeeechhhhc
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL-N-GDAILMKLILRN  144 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p-~-~D~~~l~~vlH~  144 (239)
                      ....+|+|||||.|.                                        ...|+..+.| . +|++++.-++|.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            457899999999999                                        3345555344 3 499999999999


Q ss_pred             CChhHHHHHHHHHHhhCCCCceEEEEee--ecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543          145 WDDEHCLSLLKNCYEAIPGNGKIIIIDS--TTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       145 ~~d~~~~~iL~~~~~aL~pgg~lli~d~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                      ..++.-...+ ++.++|+|+|.++..+.  +-..++.          |+           +.-.+.|  ++++.+.|.. 
T Consensus       211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~g----------m~-----------~~Y~~~~--e~~~~~~g~~-  265 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKG----------MF-----------QNYSQSF--ESQARERSCR-  265 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSCSEEEEEEECC-------C----------HH-----------HHHHHHH--HHHHHHHTCC-
T ss_pred             hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcc----------hh-----------hHHHHHH--HHHHHhcCCc-
Confidence            9888777777 99999999998888776  3222211          11           1123577  8888888984 


Q ss_pred             eeEEEcCC
Q 045543          223 VNYESFVC  230 (239)
Q Consensus       223 ~~~~~~~~  230 (239)
                      ++...+++
T Consensus       266 ~~~~~~~n  273 (281)
T 3lcv_B          266 IQRLEIGN  273 (281)
T ss_dssp             EEEEEETT
T ss_pred             eeeeeecC
Confidence            44444444

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.01  E-value=6.5e-06  Score=70.43  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++....+.+++...  ..++++++++|+|||++++...    .   +       +++           ..+..++  
T Consensus       171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~---~-------~~~-----------~~~~~~~--  223 (304)
T 3bwc_A          171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE----S---I-------WLD-----------LELIEKM--  223 (304)
T ss_dssp             EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC----C---T-------TTC-----------HHHHHHH--
T ss_pred             eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC----C---c-------ccc-----------hHHHHHH--
Confidence            99999777666554433  5899999999999999988631    1   0       011           1134567  


Q ss_pred             HHHHhhCCCceeeEEEc
Q 045543          212 MALTAKNGFKGVNYESF  228 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~~  228 (239)
                      .+.++++||..+++...
T Consensus       224 ~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          224 SRFIRETGFASVQYALM  240 (304)
T ss_dssp             HHHHHHHTCSEEEEEEC
T ss_pred             HHHHHhCCCCcEEEEEe
Confidence            88899999998887653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.00  E-value=5.3e-06  Score=65.03  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             ceeeec-hhhhcC------ChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMK-LILRNW------DDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~-~vlH~~------~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |++++. ..++.-      ..++...+|+++++.|+|||++++..+.
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            999876 333320      2355678899999999999999998654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.98  E-value=1.1e-05  Score=72.29  Aligned_cols=42  Identities=24%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      .|+|++.++++  . ++....|+++.+.|+|||+|++.+.+.+..
T Consensus       324 FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          324 CDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             CSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             CCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            39999887773  2 345678899999999999999998776654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.97  E-value=3.8e-05  Score=67.57  Aligned_cols=97  Identities=8%  Similarity=0.072  Sum_probs=58.6

Q ss_pred             ccc-ccCCc--ceeeechhhhcCCh------------------------------------hHHHHHHHHHHhhCCCCce
Q 045543          126 MFQ-KILNG--DAILMKLILRNWDD------------------------------------EHCLSLLKNCYEAIPGNGK  166 (239)
Q Consensus       126 ~~~-~~p~~--D~~~l~~vlH~~~d------------------------------------~~~~~iL~~~~~aL~pgg~  166 (239)
                      |+. .+|..  |+++.+..||-.++                                    ++-..+|+..++.|+|||+
T Consensus       141 Fy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~  220 (374)
T 3b5i_A          141 FYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGA  220 (374)
T ss_dssp             TTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            444 45653  99999999996551                                    1445679999999999999


Q ss_pred             EEEEeeecCCCCCCChhhhhhhhh-hH-----HHhhccCCc--------------cccChhhccHHHHHh-hCCCceeeE
Q 045543          167 IIIIDSTTVVIPEATPATREASSI-DI-----IMLMQLSGE--------------KERTKQEYYGMALTA-KNGFKGVNY  225 (239)
Q Consensus       167 lli~d~~~~~~~~~~~~~~~~~~~-dl-----~ml~~~~~g--------------~~rt~~e~~~~~ll~-~aGf~~~~~  225 (239)
                      +++.=.-.++. .+.........+ ++     .-|+  ..|              ..+|.+|+  +++++ +.||++.++
T Consensus       221 mvl~~~gr~~~-~~~~~~~~~~~~~~~l~~al~~l~--~eG~i~~e~~d~f~~P~y~ps~~E~--~~~l~~~~~F~I~~l  295 (374)
T 3b5i_A          221 MFLVCLGRTSV-DPTDQGGAGLLFGTHFQDAWDDLV--REGLVAAEKRDGFNIPVYAPSLQDF--KEVVDANGSFAIDKL  295 (374)
T ss_dssp             EEEEEEECCCS-STTCCHHHHHHHSSHHHHHHHHTT--SSSSSCHHHHSSCCCCBCCCCHHHH--HHHHHHHCSEEEEEE
T ss_pred             EEEEEecCCCC-ccccccchhhHHHHHHHHHHHHHH--HhCCcchhhcccCCccccCCCHHHH--HHHHHhcCCcEEEEE
Confidence            98865433332 110000000111 11     1111  122              23689999  99998 599998776


Q ss_pred             EE
Q 045543          226 ES  227 (239)
Q Consensus       226 ~~  227 (239)
                      ..
T Consensus       296 e~  297 (374)
T 3b5i_A          296 VV  297 (374)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.96  E-value=2.3e-07  Score=76.90  Aligned_cols=85  Identities=9%  Similarity=-0.037  Sum_probs=46.4

Q ss_pred             ceeeechhhhcCCh-------------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          134 DAILMKLILRNWDD-------------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       134 D~~~l~~vlH~~~d-------------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                      |+|++.-.+|...+             +....+++++++.|+|||++.+++.+.....      .  ......++. ...
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~--~l~~~g~~~-~~~  212 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------Q--LKKRLRWYS-CML  212 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------H--HGGGBSCEE-EEE
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------h--cccceEEEE-ECC
Confidence            99998755554331             1123678899999999999988875443210      0  000000111 112


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      +...+.+++  .++|+++||+.+++....
T Consensus       213 ~~~~~~~~~--~~~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          213 GKKCSLAPL--KEELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             SSTTSHHHH--HHHHHHTTCSEEEEEEEE
T ss_pred             CChhHHHHH--HHHHHHcCCCceEEEEEe
Confidence            334455778  999999999998877653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.96  E-value=6.5e-06  Score=72.73  Aligned_cols=64  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             CcceEEEeCCCCCC--------------------------------------Cccccccc-cC-Cc-ceeeechhhhc--
Q 045543          108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQK-IL-NG-DAILMKLILRN--  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~~-~p-~~-D~~~l~~vlH~--  144 (239)
                      +..+|||+|||+|.                                      +.+|+++. .+ .. |+|++.-.+|.  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            45799999999999                                      45666663 33 23 99999999987  


Q ss_pred             -CChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          145 -WDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       145 -~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                       ...+....+++++++.|+|||+++|+-
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence             445677899999999999999999963

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.95  E-value=1.5e-05  Score=64.06  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccC---Ccc
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL---NGD  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p---~~D  134 (239)
                      .++..++ ..+..+|||||||+|.                                        +.+|+.+.++   ..|
T Consensus        46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D  124 (204)
T 3njr_A           46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE  124 (204)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred             HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence            3455566 6777899999999998                                        2345554233   239


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ++++...+    +  .. +++++++.|+|||++++..
T Consensus       125 ~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~  154 (204)
T 3njr_A          125 AVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANA  154 (204)
T ss_dssp             EEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEe
Confidence            99977644    2  23 8999999999999998854

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.95  E-value=6.9e-06  Score=66.67  Aligned_cols=67  Identities=16%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-------------------------------------CccccccccC-C-c-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKIL-N-G-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p-~-~-D~~  136 (239)
                      ..+++.+. ..+..+|||||||+|.                                     +.+|+.+..+ . . |+|
T Consensus        60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  138 (231)
T 1vbf_A           60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (231)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence            34555555 6677899999999998                                     2345544333 2 3 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ++..++|++.+        ++.+.|+|||++++...
T Consensus       139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          139 VVWATAPTLLC--------KPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             EECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence            99999998874        57889999999999753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.94  E-value=7.3e-06  Score=65.78  Aligned_cols=65  Identities=12%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-C-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-N-G  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~-~  133 (239)
                      .+++.+. ..+..+|||||||+|.                                          ..+|+..+++ . .
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            4445555 6677899999999997                                          2345544444 2 3


Q ss_pred             -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                       |+|++..++|++++        ++++.|+|||++++.-
T Consensus       147 fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             eeEEEECCchHHHHH--------HHHHHcCCCcEEEEEE
Confidence             99999999998873        7889999999999864

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.94  E-value=6.9e-06  Score=65.46  Aligned_cols=77  Identities=12%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC----------------------------Cccccccc---------c-----CCc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------CGWKMFQK---------I-----LNG  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------~~gD~~~~---------~-----p~~  133 (239)
                      ..++.+.|.-+.+..+|||+|||+|.                            +.+|+.+.         +     ...
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~   92 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKV   92 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence            34566667645677899999999995                            34676552         1     223


Q ss_pred             ceeeechhh---------hcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLIL---------RNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vl---------H~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|+.....         |...-+.+..+|+.+.+.|+|||++++.-+
T Consensus        93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            888863211         111123356889999999999999987543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.93  E-value=8.8e-06  Score=64.52  Aligned_cols=38  Identities=26%  Similarity=0.193  Sum_probs=27.8

Q ss_pred             ceeeechhhhcC----ChhH-----HHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNW----DDEH-----CLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~----~d~~-----~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++...+|..    .|..     +..+|+++++.|+|||++++..
T Consensus       108 D~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          108 DIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            999987776642    1211     2358999999999999998743

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.90  E-value=2.3e-05  Score=61.70  Aligned_cols=66  Identities=12%  Similarity=-0.009  Sum_probs=49.7

Q ss_pred             CCcceEEEeCCCCCC----------------------------------------Cccccccc---cC-Cc-ceeeechh
Q 045543          107 EKIKQLVDVGGGCGK----------------------------------------CGWKMFQK---IL-NG-DAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~---~p-~~-D~~~l~~v  141 (239)
                      .+..+|||+|||+|.                                        +.+|+.+.   ++ .. |+|++...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            355799999999998                                        34555441   22 33 99999887


Q ss_pred             hhcCChhHHHHHHHHHHh--hCCCCceEEEEeee
Q 045543          142 LRNWDDEHCLSLLKNCYE--AIPGNGKIIIIDST  173 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~--aL~pgg~lli~d~~  173 (239)
                      +|. ..++..++++.+.+  .|+|||++++....
T Consensus       123 ~~~-~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          123 YNV-DSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             TTS-CHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCc-chhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            764 34667899999999  99999999886554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.90  E-value=4.2e-05  Score=62.68  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v  141 (239)
                      ++..+|+|||||+|.                                          ..+|.+++++.   .|++++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            345799999999999                                          55777876663   498888765


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK  221 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~  221 (239)
                          ..+....||..+.+.|+|+|++++. ...                              .....  ++||.+.||.
T Consensus        94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq-~~~------------------------------~~~~v--r~~L~~~Gf~  136 (225)
T 3kr9_A           94 ----GGRLIARILEEGLGKLANVERLILQ-PNN------------------------------REDDL--RIWLQDHGFQ  136 (225)
T ss_dssp             ----CHHHHHHHHHHTGGGCTTCCEEEEE-ESS------------------------------CHHHH--HHHHHHTTEE
T ss_pred             ----ChHHHHHHHHHHHHHhCCCCEEEEE-CCC------------------------------CHHHH--HHHHHHCCCE
Confidence                4455789999999999999988773 210                              12334  7779999999


Q ss_pred             eeeEEEc---CCceeEEEEE
Q 045543          222 GVNYESF---VCNFYIMEFI  238 (239)
Q Consensus       222 ~~~~~~~---~~~~~vie~~  238 (239)
                      +++..-+   ...+.+|.+.
T Consensus       137 i~~e~lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          137 IVAESILEEAGKFYEILVVE  156 (225)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            8876432   2345566654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.87  E-value=2.1e-05  Score=67.03  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~~vl  142 (239)
                      ..+..+|||||||+|.                                         +.+|..+ +|. . |+|++....
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~~  198 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAALA  198 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTTC
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCCc
Confidence            7788999999999985                                         3455544 443 3 999986552


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                         ++  ..++++++++.|+|||+|++.+
T Consensus       199 ---~d--~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          199 ---EP--KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             ---SC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ---cC--HHHHHHHHHHHcCCCcEEEEEc
Confidence               33  4589999999999999999876

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.87  E-value=1.5e-05  Score=61.78  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC---------------------------------------CccccccccCC--cce
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILN--GDA  135 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~--~D~  135 (239)
                      ..+++.++ ..+..+|||+|||+|.                                       +.+|+.++++.  .|+
T Consensus        25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  103 (183)
T 2yxd_A           25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNK  103 (183)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSE
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcE
Confidence            34555555 6677899999999998                                       23455554553  399


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      +++..+      .+...+++++++.  |||++++.+.
T Consensus       104 i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          104 AFIGGT------KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             EEECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             EEECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence            999888      2345788898888  9999998763

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.85  E-value=1.1e-05  Score=66.00  Aligned_cols=66  Identities=18%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCC---c
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN---G  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~---~  133 (239)
                      ..+++.++ ..+..+|||||||+|.                                        +.+|+..+++.   .
T Consensus        81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  159 (235)
T 1jg1_A           81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  159 (235)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCc
Confidence            44555566 7777899999999997                                        33555444553   3


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++..++|++.+        ++.+.|+|||++++.-
T Consensus       160 D~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          160 DVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             cEEEECCcHHHHHH--------HHHHhcCCCcEEEEEE
Confidence            99999999998874        5788999999998853

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.84  E-value=1.1e-05  Score=67.13  Aligned_cols=70  Identities=6%  Similarity=-0.063  Sum_probs=46.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|+.+.+-    +  ...+++.+.+.|+|||++++.......                           -...++  ..
T Consensus       153 D~I~s~a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~--~~  197 (249)
T 3g89_A          153 ARAVARAVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPL--PP  197 (249)
T ss_dssp             EEEEEESSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTH--HH
T ss_pred             eEEEECCcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHH--HH
Confidence            999987652    2  258899999999999999886521100                           012345  67


Q ss_pred             HHhhCCCceeeEEEc--C---CceeEEEEE
Q 045543          214 LTAKNGFKGVNYESF--V---CNFYIMEFI  238 (239)
Q Consensus       214 ll~~aGf~~~~~~~~--~---~~~~vie~~  238 (239)
                      .+++.||++.++.+.  +   ....++...
T Consensus       198 ~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~  227 (249)
T 3g89_A          198 ALERLGGRLGEVLALQLPLSGEARHLVVLE  227 (249)
T ss_dssp             HHHHHTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred             HHHHcCCeEEEEEEeeCCCCCCcEEEEEEE
Confidence            788889988877654  2   234555544

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.83  E-value=1.6e-05  Score=69.03  Aligned_cols=70  Identities=20%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccC-Cc-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL-NG-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p-~~-D  134 (239)
                      .+.+... ..+..+|||||||+|.                                        +.+|+.+ ++| .. |
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence            4444444 5667899999999998                                        2345554 455 33 9


Q ss_pred             eeeechhhhcC-ChhHHHHHHHHHHhhCCCCceEE
Q 045543          135 AILMKLILRNW-DDEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       135 ~~~l~~vlH~~-~d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                      +|++..+.+.+ .......+|+++++.|+|||+++
T Consensus       134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            99977643222 23445689999999999999987

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.81  E-value=1e-05  Score=71.27  Aligned_cols=67  Identities=15%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-ceeeechhhh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-DAILMKLILR  143 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH  143 (239)
                      ..+..+|||||||+|.                                        +.+|+.+ ++|.. |+|++..+.|
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            5567899999999998                                        3455554 44543 9999977666


Q ss_pred             cCCh-hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          144 NWDD-EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       144 ~~~d-~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .... .....+++++++.|+|||++++.+.
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            5543 3456799999999999999987654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.81  E-value=0.00037  Score=60.92  Aligned_cols=101  Identities=10%  Similarity=-0.035  Sum_probs=59.0

Q ss_pred             ccccc-ccCCc--ceeeechhhhcCCh-------------------------------hHHHHHHHHHHhhCCCCceEEE
Q 045543          124 WKMFQ-KILNG--DAILMKLILRNWDD-------------------------------EHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       124 gD~~~-~~p~~--D~~~l~~vlH~~~d-------------------------------~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |.|+. .+|..  |+++.+..||=.++                               ++-..+|+..++.|+|||++++
T Consensus       128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            45665 56754  99999999984332                               1345669999999999999988


Q ss_pred             EeeecCCCCC-C----C-hhhhhhhhhhHHHhhccC---------CccccChhhccHHHHHhhCCC-ceeeEE
Q 045543          170 IDSTTVVIPE-A----T-PATREASSIDIIMLMQLS---------GEKERTKQEYYGMALTAKNGF-KGVNYE  226 (239)
Q Consensus       170 ~d~~~~~~~~-~----~-~~~~~~~~~dl~ml~~~~---------~g~~rt~~e~~~~~ll~~aGf-~~~~~~  226 (239)
                      .=...+.... .    . +......+.|+..-....         --..++.+|+  +++++++|+ ++.+..
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~--~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEV--EAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHH--HHHHHHTTTBCCEEEE
T ss_pred             EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHH--HHHHHHcCCceEEEEE
Confidence            6544433210 0    0 000111222221110000         1134588999  999999964 766543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.80  E-value=1e-05  Score=64.41  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=41.8

Q ss_pred             cceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeechhhhcC
Q 045543          109 IKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMKLILRNW  145 (239)
Q Consensus       109 ~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~  145 (239)
                      ..+|||||||+|.                                         +.+|+.+..+. . |+|++..+ ++ 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~-  143 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS-  143 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS-
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC-
Confidence            5799999999998                                         33455442232 3 99986543 22 


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                          ...+++++++.|+|||++++.
T Consensus       144 ----~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          144 ----LNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ----HHHHHHHHTTSEEEEEEEEEE
T ss_pred             ----HHHHHHHHHHhcCCCcEEEEE
Confidence                358999999999999999886

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.80  E-value=3.5e-05  Score=61.94  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             CcceEEEeCCCCCC-----------------------------------------Ccccccc-c--cCC-c-ceeeechh
Q 045543          108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-K--ILN-G-DAILMKLI  141 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~--~p~-~-D~~~l~~v  141 (239)
                      +..+|||||||+|.                                         +.+|+.+ +  ++. . |+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            45789999999999                                         3455554 2  443 3 98887754


Q ss_pred             hhcCChh-------HHHHHHHHHHhhCCCCceEEEE
Q 045543          142 LRNWDDE-------HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       142 lH~~~d~-------~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .+ |...       ....+|+++++.|+|||++++.
T Consensus       121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            32 2211       1257999999999999999884

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.78  E-value=5.3e-05  Score=63.79  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=61.2

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--~D~~~l~~vl  142 (239)
                      ..+..+|||+|||+|.                                         +.+|.++..+.  .|++++... 
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p-  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence            3456899999999999                                         34566552222  399887422 


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                           .....+++++.+.|+|||++++.+.......                       .....+++  .+.++++||+.
T Consensus       202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------~~~~~~~i--~~~~~~~G~~~  251 (278)
T 2frn_A          202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETF--KRITKEYGYDV  251 (278)
T ss_dssp             -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHH--HHHHHHTTCEE
T ss_pred             -----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------cccHHHHH--HHHHHHcCCee
Confidence                 2235789999999999999999887532110                       01244666  88899999987


Q ss_pred             ee
Q 045543          223 VN  224 (239)
Q Consensus       223 ~~  224 (239)
                      ..
T Consensus       252 ~~  253 (278)
T 2frn_A          252 EK  253 (278)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.77  E-value=1.1e-05  Score=65.40  Aligned_cols=38  Identities=11%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++....|++.+  ...+++.+ +.|+|||+|++.+...
T Consensus       136 D~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             SEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             EEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCC
Confidence            99999988877743  34778888 9999999988766554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.77  E-value=2.3e-05  Score=63.27  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=28.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |+|++...     ......+++++.+.|+|||.|++.+...+
T Consensus       135 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          135 DFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             SEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             CEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            88876543     34456899999999999998877666543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.77  E-value=0.00013  Score=59.97  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v  141 (239)
                      ++..+|+|||||+|.                                          ..||.++.++.   .|++++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            345899999999999                                          55788875542   399988766


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK  221 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~  221 (239)
                      .    .+....||....+.|+++|++++.-.                         .      ..++.  ++||.+.||.
T Consensus       100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------~------~~~~l--r~~L~~~Gf~  142 (230)
T 3lec_A          100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------N------REDDL--RKWLAANDFE  142 (230)
T ss_dssp             C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHH--HHHHHHTTEE
T ss_pred             c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------C------ChHHH--HHHHHHCCCE
Confidence            3    46678999999999999998877421                         0      13445  8889999999


Q ss_pred             eeeEEEc---CCceeEEEEE
Q 045543          222 GVNYESF---VCNFYIMEFI  238 (239)
Q Consensus       222 ~~~~~~~---~~~~~vie~~  238 (239)
                      +++..-+   ...+.+|.+.
T Consensus       143 i~~E~lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          143 IVAEDILTENDKRYEILVVK  162 (230)
T ss_dssp             EEEEEEEEC--CEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            9876543   2356677664

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.76  E-value=9.1e-06  Score=70.81  Aligned_cols=64  Identities=20%  Similarity=0.169  Sum_probs=47.3

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-DAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vl  142 (239)
                      ..+..+|||||||+|.                                        +.+|+.+ ++|. . |+|++..+.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3456899999999998                                        3456555 5663 3 999987664


Q ss_pred             hcC-ChhHHHHHHHHHHhhCCCCceEEE
Q 045543          143 RNW-DDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       143 H~~-~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |.+ ..+....+|+.+.+.|+|||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            443 233456899999999999999874

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.75  E-value=0.0001  Score=60.61  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             ceeeechhhhcCCh-------hHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDD-------EHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |+|++...++...+       +....+++++++.|+|||++++++..
T Consensus       170 D~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          170 DVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             SEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             eEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            99999877665443       66789999999999999999986543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.75  E-value=5.4e-05  Score=66.77  Aligned_cols=103  Identities=11%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             Ccccccc-ccCCc--ceeeechhhhcCChh-------------------------HH------------HHHHHHHHhhC
Q 045543          122 CGWKMFQ-KILNG--DAILMKLILRNWDDE-------------------------HC------------LSLLKNCYEAI  161 (239)
Q Consensus       122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~d~-------------------------~~------------~~iL~~~~~aL  161 (239)
                      ++|.|+. -+|..  |+++.+..||=.++.                         .+            ..+|+..++.|
T Consensus       136 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL  215 (384)
T 2efj_A          136 MPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEEL  215 (384)
T ss_dssp             CCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456666 56754  999999999843321                         12            23388889999


Q ss_pred             CCCceEEEEeeecCCCC-CCChh-hhhhhhhhHHHhhc--------c-CCccccChhhccHHHHHhhCC-CceeeEE
Q 045543          162 PGNGKIIIIDSTTVVIP-EATPA-TREASSIDIIMLMQ--------L-SGEKERTKQEYYGMALTAKNG-FKGVNYE  226 (239)
Q Consensus       162 ~pgg~lli~d~~~~~~~-~~~~~-~~~~~~~dl~ml~~--------~-~~g~~rt~~e~~~~~ll~~aG-f~~~~~~  226 (239)
                      +|||++++.=.-.+... .+... .....+.|+.---.        + ---..++.+|+  +++++++| |++.++.
T Consensus       216 ~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~--~~~le~~g~F~i~~le  290 (384)
T 2efj_A          216 ISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEV--KRIVEEEGSFEILYLE  290 (384)
T ss_dssp             EEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHH--HHHHHHHCSEEEEEEE
T ss_pred             ccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHH--HHHHHHcCCceEEEEE
Confidence            99999988644333320 11100 01122222211100        0 00123689999  99999985 7887654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.74  E-value=2.2e-05  Score=64.86  Aligned_cols=37  Identities=16%  Similarity=0.051  Sum_probs=28.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |+|++..     +......+|+++++.|+|||.|++.+....
T Consensus       138 D~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          138 DLIFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             SEEEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             EEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            9988744     344557899999999999998888665543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.73  E-value=1.6e-05  Score=64.66  Aligned_cols=63  Identities=10%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             CcceEEEeCCCCCC-----------------------------------------Cccccccc----cCCc--ceeeech
Q 045543          108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQK----ILNG--DAILMKL  140 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~----~p~~--D~~~l~~  140 (239)
                      ...+|||||||+|.                                         +.+|..+.    ++.+  |.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            56799999999999                                         34554431    4443  8777653


Q ss_pred             hhhcCChhHH-------HHHHHHHHhhCCCCceEEEEe
Q 045543          141 ILRNWDDEHC-------LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       141 vlH~~~d~~~-------~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ... |+....       ..+++.+++.|+|||+|++..
T Consensus       114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          114 PDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             CCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            322 322211       259999999999999998853

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.72  E-value=2.7e-05  Score=65.26  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------------CccccccccCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------------CGWKMFQKILN  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------------~~gD~~~~~p~  132 (239)
                      +..++..++ +.+..+|||+|||+|.                                           +.+|+.+.++.
T Consensus       101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            345666676 7788899999999997                                           33455544453


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                        .|+|++     +.++.  ..+|+++.++|+|||++++.+.
T Consensus       180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          180 KDVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred             CccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence              388887     34443  4889999999999999999764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.72  E-value=2.5e-05  Score=66.94  Aligned_cols=66  Identities=14%  Similarity=0.311  Sum_probs=49.8

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-C-
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-N-  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~-  132 (239)
                      ..+++.++ ..+..+|||||||+|.                                          +.+|+.+..+ . 
T Consensus        65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            34555555 6777899999999998                                          2345544232 2 


Q ss_pred             c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      . |+|++..++|+.+        +++.+.|+|||++++..
T Consensus       144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEB
T ss_pred             CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEE
Confidence            3 9999999999887        46788999999999974

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.72  E-value=1e-05  Score=66.16  Aligned_cols=65  Identities=11%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             CCCcceEEEeCCCCCC------------------------------------------CccccccccC----Cc-ceeee
Q 045543          106 FEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL----NG-DAILM  138 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p----~~-D~~~l  138 (239)
                      ..+..+|||||||+|.                                          +.+|+.+..|    .. |+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            4567899999999998                                          3456655333    23 99986


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      ..     +.+....+++++.+.|+|||+|++.+...+
T Consensus       149 ~~-----~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~  180 (232)
T 3ntv_A          149 DA-----AKAQSKKFFEIYTPLLKHQGLVITDNVLYH  180 (232)
T ss_dssp             ET-----TSSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred             cC-----cHHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence            53     233456899999999999999977555443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.70  E-value=3.2e-05  Score=66.41  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=85.9

Q ss_pred             CHHHHHHhCCCCCCCChhhHHHHHHHhcc--------CCCCCCCeEecChh--h-----HHHHhcCCC-----ccc---c
Q 045543           17 SAAEIEAQMPSHNPNAAVMLDRVLRRSLS--------SAGDDRRLQRLAPV--A-----KYVLHYGIG-----DYE---H   73 (239)
Q Consensus        17 t~~eLA~~~g~~~~~~~~~l~rlL~~L~~--------~~~~~~~~y~~t~~--s-----~~l~~~g~~-----~~~---~   73 (239)
                      .++.||.+...    ++-.++++.+.+-.        ..++.+-.++.|+.  +     +.|...|..     +..   +
T Consensus         6 ~~~~l~~~~~~----P~w~~~~~~~~~g~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~   81 (315)
T 1ixk_A            6 SMLDKLLRLGY----SKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFC   81 (315)
T ss_dssp             HHHHHHHHTTC----CHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEE
T ss_pred             HHHHHHHHhCC----cHHHHHHHHHHccHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEE
Confidence            46778888888    77777777655431        12333344554433  1     123233421     111   1


Q ss_pred             ccc---CchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------
Q 045543           74 AGL---DSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------  121 (239)
Q Consensus        74 l~~---~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------  121 (239)
                      +..   +......|..+.-.........++..++ ..+..+|||+|||+|.                             
T Consensus        82 ~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~  160 (315)
T 1ixk_A           82 LTREPFSITSTPEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR  160 (315)
T ss_dssp             EEECSSCGGGSHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH
T ss_pred             EeCCCCCcccChhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            211   2233344554443333322333445556 6777899999999998                             


Q ss_pred             -------------Ccccccc-c-cCCc-ceeee------chhhhc-------CChhH-------HHHHHHHHHhhCCCCc
Q 045543          122 -------------CGWKMFQ-K-ILNG-DAILM------KLILRN-------WDDEH-------CLSLLKNCYEAIPGNG  165 (239)
Q Consensus       122 -------------~~gD~~~-~-~p~~-D~~~l------~~vlH~-------~~d~~-------~~~iL~~~~~aL~pgg  165 (239)
                                   +.+|+.+ + .+.. |+|++      ..+++.       |+.++       ..++|+++++.|+|||
T Consensus       161 ~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG  240 (315)
T 1ixk_A          161 LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG  240 (315)
T ss_dssp             HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                         3455544 2 2223 99987      233432       33333       2589999999999999


Q ss_pred             eEEEEeeec
Q 045543          166 KIIIIDSTT  174 (239)
Q Consensus       166 ~lli~d~~~  174 (239)
                      +|++.....
T Consensus       241 ~lv~stcs~  249 (315)
T 1ixk_A          241 ILVYSTCSL  249 (315)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEeCCC
Confidence            998876533

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.70  E-value=3.8e-05  Score=61.97  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=18.6

Q ss_pred             HHHHHHHHhhCCCCceEEEEe
Q 045543          151 LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ..+|+.+++.|+|||+|++..
T Consensus       133 ~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          133 SHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            578999999999999998853

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.69  E-value=2.9e-05  Score=63.83  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC----------------------------------C---------cccccc-ccCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------C---------GWKMFQ-KILN  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------~---------~gD~~~-~~p~  132 (239)
                      ..++..++ +.+..+|||+|||+|.                                  .         .+|+.+ +++.
T Consensus        86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            45667777 7888999999999997                                  0         123333 2453


Q ss_pred             --cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          133 --GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       133 --~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                        .|+|++     ++++.  ..+|++++++|+|||++++...
T Consensus       165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence              388887     45544  3789999999999999999763

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.69  E-value=4.2e-05  Score=62.22  Aligned_cols=36  Identities=8%  Similarity=0.085  Sum_probs=29.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++....+     +...+|+++.+.|+|||++++.+...
T Consensus       128 D~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          128 DVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             EEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             cEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            9999877654     34689999999999999998876543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.67  E-value=2e-05  Score=68.06  Aligned_cols=64  Identities=20%  Similarity=0.116  Sum_probs=46.6

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccC-Cc-ceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL-NG-DAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p-~~-D~~~l~~vl  142 (239)
                      ..+..+|||||||+|.                                        +.+|+.+ ++| .. |+|++..+.
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            4456799999999998                                        3345554 455 33 999988655


Q ss_pred             hcCC-hhHHHHHHHHHHhhCCCCceEEE
Q 045543          143 RNWD-DEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       143 H~~~-d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |.+. ......+|+.+.+.|+|||+++.
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            4432 33345899999999999999874

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.65  E-value=3.4e-05  Score=59.85  Aligned_cols=74  Identities=9%  Similarity=0.117  Sum_probs=48.4

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccC---C
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL---N  132 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p---~  132 (239)
                      ..+++.+....+..+|||+|||+|.                                         +.+|+.+..+   .
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   99 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence            3444444324456899999999999                                         2345544222   3


Q ss_pred             c-ceeeechhhhcCChhHHHHHHHHHH--hhCCCCceEEEEeee
Q 045543          133 G-DAILMKLILRNWDDEHCLSLLKNCY--EAIPGNGKIIIIDST  173 (239)
Q Consensus       133 ~-D~~~l~~vlH~~~d~~~~~iL~~~~--~aL~pgg~lli~d~~  173 (239)
                      . |++++...+|.   .....+++.+.  +.|+|||++++....
T Consensus       100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            3 99998766642   22345566665  999999999886543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.65  E-value=9.4e-05  Score=60.39  Aligned_cols=91  Identities=11%  Similarity=0.108  Sum_probs=58.8

Q ss_pred             cccCchHHHHHHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------
Q 045543           74 AGLDSRFNEVLNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------  121 (239)
Q Consensus        74 l~~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------  121 (239)
                      +-..|.........+......    .+..++...+ ..+..+|||+|||+|.                            
T Consensus        54 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~  132 (248)
T 2yvl_A           54 EVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN  132 (248)
T ss_dssp             EEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence            334555444443444333221    2335556666 7778899999999997                            


Q ss_pred             ------------Ccccccccc-CC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          122 ------------CGWKMFQKI-LN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       122 ------------~~gD~~~~~-p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                                  ..+|+.+.. +. . |++++     +.++.  ..+++++.+.|+|||++++...
T Consensus       133 ~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          133 LKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-----DVREP--WHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             HHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE-----CSSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred             HHHcCCCCcEEEEEcChhhcccCCCcccEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence                        234555544 43 3 99886     33333  4789999999999999999764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.63  E-value=4.1e-05  Score=59.67  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=46.9

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccccc------C
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKI------L  131 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~------p  131 (239)
                      +++.+....+..+|||+|||+|.                                         +.+|+.+..      +
T Consensus        35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  114 (187)
T 2fhp_A           35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEK  114 (187)
T ss_dssp             HHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcC
Confidence            33344324466899999999999                                         334554421      2


Q ss_pred             Cc-ceeeechhhhcCChhHHHHHHHHH--HhhCCCCceEEEEee
Q 045543          132 NG-DAILMKLILRNWDDEHCLSLLKNC--YEAIPGNGKIIIIDS  172 (239)
Q Consensus       132 ~~-D~~~l~~vlH~~~d~~~~~iL~~~--~~aL~pgg~lli~d~  172 (239)
                      .. |++++...+|....+   .+++.+  ++.|+|||++++...
T Consensus       115 ~~fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          115 LQFDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             CCEEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeC
Confidence            33 999998876643333   445555  888999999988644

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.60  E-value=5.3e-05  Score=62.48  Aligned_cols=38  Identities=16%  Similarity=0.089  Sum_probs=29.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      |+|++...     .+....+|+++.+.|+|||.|++.+.....
T Consensus       138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          138 DFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             eEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            88877543     344567899999999999999887766543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.59  E-value=7.7e-05  Score=63.82  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=25.3

Q ss_pred             ceeeechhhh---cCChhH-HHHHHHHHHhhCCCCceEEE
Q 045543          134 DAILMKLILR---NWDDEH-CLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       134 D~~~l~~vlH---~~~d~~-~~~iL~~~~~aL~pgg~lli  169 (239)
                      |+|++....|   ...|.. ...+|+.+++.|+|||++++
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            9988865543   222222 23689999999999998876

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.59  E-value=2.9e-05  Score=67.00  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++..     ++.  ..+++++++.|+|||++++...
T Consensus       189 D~V~~~~-----~~~--~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          189 DAVALDM-----LNP--HVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             EEEEECS-----SST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred             eEEEECC-----CCH--HHHHHHHHHhcCCCcEEEEEeC
Confidence            8888732     222  1379999999999999998764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.57  E-value=0.00025  Score=58.68  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=66.8

Q ss_pred             CCcceEEEeCCCCCC------------------------------------------CccccccccCC---cceeeechh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------------CGWKMFQKILN---GDAILMKLI  141 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p~---~D~~~l~~v  141 (239)
                      ++..+|+|||||+|.                                          ..+|.++.++.   .|+|++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            345899999999999                                          45677775542   499888655


Q ss_pred             hhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCc
Q 045543          142 LRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFK  221 (239)
Q Consensus       142 lH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~  221 (239)
                          ..+....||....+.|+++++|++.-..                               .....  ++||.+.||.
T Consensus       100 ----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~l--r~~L~~~Gf~  142 (244)
T 3gnl_A          100 ----GGTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQL--REWSEQNNWL  142 (244)
T ss_dssp             ----CHHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHH--HHHHHHHTEE
T ss_pred             ----chHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHH--HHHHHHCCCE
Confidence                3466789999999999999988775210                               12344  7889999999


Q ss_pred             eeeEEEc---CCceeEEEEE
Q 045543          222 GVNYESF---VCNFYIMEFI  238 (239)
Q Consensus       222 ~~~~~~~---~~~~~vie~~  238 (239)
                      +++..-+   ...+-+|.+.
T Consensus       143 i~~E~lv~e~~k~Yeii~~~  162 (244)
T 3gnl_A          143 ITSEAILREDNKVYEIMVLA  162 (244)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            8765432   2345566654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.56  E-value=4.9e-05  Score=64.31  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCCcc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNGD  134 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~D  134 (239)
                      ...+++.++ ..+..+|||||||+|.                                        +.+|+.+ ++|..|
T Consensus        17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD   95 (285)
T 1zq9_A           17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFD   95 (285)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCS
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhc
Confidence            456677776 7777899999999999                                        2355554 444448


Q ss_pred             eeeechhhhcCChhHHHHHHHH--------------H--HhhCCCCceEE
Q 045543          135 AILMKLILRNWDDEHCLSLLKN--------------C--YEAIPGNGKII  168 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~--------------~--~~aL~pgg~ll  168 (239)
                      +++. +.-++|+.+....+|..              +  +.+++|||+++
T Consensus        96 ~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           96 TCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            7776 55556766666666643              2  36899999764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.56  E-value=6.1e-05  Score=62.47  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             CCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC-c-ceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d  147 (239)
                      .+..+|||||||+|.                                    +.+|+.+ +++. . |+|+...+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            456799999999998                                    2234433 3443 3 999976552     


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                          ..++++++.|+|||++++....
T Consensus       159 ----~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          159 ----CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             ----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----hhHHHHHHhcCCCcEEEEEEcC
Confidence                3589999999999999998654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.56  E-value=5.8e-05  Score=59.37  Aligned_cols=39  Identities=23%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             ceeeechhhhc---C-ChhH-----HHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRN---W-DDEH-----CLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~---~-~d~~-----~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++...+|.   | .|..     +..+|+++++.|+|||++++..+
T Consensus        99 D~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           99 DVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            88887543332   1 2221     25889999999999999998754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.54  E-value=4.8e-05  Score=62.93  Aligned_cols=65  Identities=14%  Similarity=0.148  Sum_probs=51.1

Q ss_pred             CCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCC-cceeeechhhhcCC
Q 045543          106 FEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILN-GDAILMKLILRNWD  146 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~-~D~~~l~~vlH~~~  146 (239)
                      +....+|+|||||.|.                                     ...|+.. +.|. +|++++.-++|...
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE  182 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLE  182 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHH
T ss_pred             CCCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhh
Confidence            4567899999999998                                     3446665 4444 49999999999998


Q ss_pred             hhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          147 DEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       147 d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +++-...+ ++.++|+|++.++..+
T Consensus       183 ~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          183 REQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             hhchhhHH-HHHHHhcCCCEEEEcC
Confidence            77756666 9999999998777766

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.54  E-value=4e-05  Score=58.73  Aligned_cols=38  Identities=11%  Similarity=0.014  Sum_probs=25.5

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .|+|++...+| ...++..+.+.+ ++.|+|||++++...
T Consensus       111 ~D~i~~~~~~~-~~~~~~~~~~~~-~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          111 FTVAFMAPPYA-MDLAALFGELLA-SGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEEEECCCTT-SCTTHHHHHHHH-HTCEEEEEEEEEEEE
T ss_pred             eEEEEECCCCc-hhHHHHHHHHHh-hcccCCCcEEEEEeC
Confidence            39999998887 333333333333 499999999988654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.54  E-value=5.3e-05  Score=67.15  Aligned_cols=37  Identities=14%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |+|+.. ..|.+.  +..+.|+++++.|||||+++|.|..
T Consensus       290 DlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          290 DIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence            999875 557664  4568999999999999999998875

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.53  E-value=2.2e-05  Score=63.36  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |+|++..     +.+....+++++++.|+|||+|++.+...+
T Consensus       142 D~v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          142 DLIYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            8887543     344457899999999999999998776654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.48  E-value=3.8e-05  Score=62.85  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=28.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |+|++...     .+....+++++.+.|+|||++++.+...+
T Consensus       149 D~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  185 (239)
T 2hnk_A          149 DLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWD  185 (239)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             CEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence            88887643     34456889999999999999998765443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.46  E-value=0.00012  Score=65.83  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=54.1

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-c--cC-
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-K--IL-  131 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~--~p-  131 (239)
                      .++..++ ..+..+|||+|||+|.                                          +.+|+.+ +  ++ 
T Consensus       250 l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          250 VASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             HHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred             HHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence            3344555 6677899999999997                                          3455544 2  33 


Q ss_pred             Cc-ceeee------chhhhcCChh-------HH-------HHHHHHHHhhCCCCceEEEEeeecC
Q 045543          132 NG-DAILM------KLILRNWDDE-------HC-------LSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       132 ~~-D~~~l------~~vlH~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      .. |+|++      ..++|..+|.       +.       ..+|+++.+.|+|||+|++.+....
T Consensus       329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            33 99996      4566654442       21       6899999999999999999876543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.45  E-value=8.4e-05  Score=61.88  Aligned_cols=22  Identities=9%  Similarity=0.237  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhhCCCCceEEEE
Q 045543          149 HCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ....+++.+++.|+|||+++++
T Consensus       148 ~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          148 LFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCCEEEEE
Confidence            3678999999999999999885

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.44  E-value=0.00011  Score=61.30  Aligned_cols=88  Identities=13%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             cCchHHHHHHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC------------------------------
Q 045543           76 LDSRFNEVLNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK------------------------------  121 (239)
Q Consensus        76 ~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------  121 (239)
                      ..|.... |...|......    .+..++..++ +.+..+|||+|||+|.                              
T Consensus        65 ~~p~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           65 LRPLLVD-YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             ECCCHHH-HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             eCCCHHH-HHhhccccceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            3455443 33444433332    2345666777 7788899999999998                              


Q ss_pred             ----C-c----------ccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          122 ----C-G----------WKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       122 ----~-~----------gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                          . .          +|+.+ +++. . |+|++     +.++.  ..+|+++.+.|+|||++++...
T Consensus       143 ~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          143 NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             HHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence                1 1          12222 2332 3 88887     23333  2789999999999999999764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.39  E-value=6.3e-05  Score=60.80  Aligned_cols=37  Identities=16%  Similarity=0.413  Sum_probs=28.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |++++..     +......+++++.+.|+|||.+++.+....
T Consensus       147 D~v~~d~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  183 (229)
T 2avd_A          147 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR  183 (229)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence            8887743     344456899999999999999988776543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.38  E-value=0.00032  Score=58.74  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             CCCcceEEEeCCCCCC------------------C-----------------------ccccccccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK------------------C-----------------------GWKMFQKILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------~-----------------------~gD~~~~~p~--~D~~~l~~vl  142 (239)
                      +.+..+|||||||+|.                  +                       .+|+++ +|.  .|+|++... 
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~sd~~-  149 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMCDVG-  149 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEECCC-
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEEeCc-
Confidence            5667899999999998                  1                       223332 342  399998755 


Q ss_pred             hcCCh----hH-HHHHHHHHHhhCCCCc--eEEEEee
Q 045543          143 RNWDD----EH-CLSLLKNCYEAIPGNG--KIIIIDS  172 (239)
Q Consensus       143 H~~~d----~~-~~~iL~~~~~aL~pgg--~lli~d~  172 (239)
                      |...+    +. ...+|+.+++.|+|||  .+++..+
T Consensus       150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            33221    11 2348999999999999  8887443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.37  E-value=8.3e-05  Score=62.38  Aligned_cols=24  Identities=8%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeec
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .++|+++.+.|+|||+|++.....
T Consensus       191 ~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          191 KELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHhCCCCCEEEEEECCC
Confidence            689999999999999998876544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.36  E-value=0.00011  Score=61.93  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             cccc-ccC--Cc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          125 KMFQ-KIL--NG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       125 D~~~-~~p--~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |+++ ++|  .. |+|++++|||+++++...+++++++++|+|||.|++
T Consensus       202 dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          202 NLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             CTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            4455 355  23 999999999999999889999999999999999987

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.35  E-value=0.00026  Score=59.53  Aligned_cols=35  Identities=11%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCC---C--CceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIP---G--NGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~---p--gg~lli~  170 (239)
                      |+|+++.++|+.++  ...+++.+++.|+   |  ||+++++
T Consensus       165 D~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          165 QVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             SEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             CEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            99999999987654  4689999999999   9  9998774

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.34  E-value=5.3e-05  Score=62.34  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=18.2

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+++++.+.|+|||+|++.
T Consensus       153 ~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          153 NTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            47999999999999999984

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.34  E-value=5e-06  Score=68.06  Aligned_cols=60  Identities=15%  Similarity=0.040  Sum_probs=45.5

Q ss_pred             CcceEEEeCCCCCC----------------------------------------CccccccccCC-c-ceeeechhhhcC
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN-G-DAILMKLILRNW  145 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~-~-D~~~l~~vlH~~  145 (239)
                      +..+|||+|||+|.                                        +.+|+.+..+. . |+|++...+|..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            56899999999999                                        33455442232 3 999999999987


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEE
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ++..  ..+.++++.|+|||.+++
T Consensus       158 ~~~~--~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          158 DYAT--AETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             GGGG--SSSBCTTTSCSSCHHHHH
T ss_pred             chhh--hHHHHHHhhcCCcceeHH
Confidence            7654  367789999999998544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.34  E-value=0.00035  Score=58.86  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             CCCcceEEEeCCCCCC------------------C-----------------------ccccccccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK------------------C-----------------------GWKMFQKILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~------------------~-----------------------~gD~~~~~p~--~D~~~l~~vl  142 (239)
                      +.+..+|||||||+|.                  +                       .+|+.+ +|.  .|+|++... 
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd~~-  157 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCDIG-  157 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEECCC-
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEECCC-
Confidence            5667899999999998                  1                       223322 343  399998765 


Q ss_pred             hcCC----hhH-HHHHHHHHHhhCCCCc--eEEEEe
Q 045543          143 RNWD----DEH-CLSLLKNCYEAIPGNG--KIIIID  171 (239)
Q Consensus       143 H~~~----d~~-~~~iL~~~~~aL~pgg--~lli~d  171 (239)
                      |...    |.. ...+|+.+++.|+|||  ++++..
T Consensus       158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            3222    111 2358999999999999  888743

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=60.08  Aligned_cols=20  Identities=20%  Similarity=0.197  Sum_probs=18.1

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+|+++++.|+|||+|++.
T Consensus       148 ~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          148 PTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEE
Confidence            37999999999999999885

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.29  E-value=0.00033  Score=59.14  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             CcceEEEeCCCCCC-----------------------------------------CccccccccC-Cc---ceeeec---
Q 045543          108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQKIL-NG---DAILMK---  139 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p-~~---D~~~l~---  139 (239)
                      ...+|||+|||+|.                                         +.+|++++++ ..   |+|++.   
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy  202 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY  202 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence            45699999999998                                         3466666443 34   988874   


Q ss_pred             ---------hhhhcCCh------hHHHHHHHHHH-hhCCCCceEEE
Q 045543          140 ---------LILRNWDD------EHCLSLLKNCY-EAIPGNGKIII  169 (239)
Q Consensus       140 ---------~vlH~~~d------~~~~~iL~~~~-~aL~pgg~lli  169 (239)
                               .+.| .+.      ++...+++++. +.++|||++++
T Consensus       203 i~~~~~l~~~v~~-ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          203 VKSSAHLPKDVLF-EPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             BCGGGSCTTSCCC-SCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CCcccccChhhcc-CcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence                     3331 221      22237899999 99999999886

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.29  E-value=0.00024  Score=58.26  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=27.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHh-hCCCCceEEEEee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYE-AIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~-aL~pgg~lli~d~  172 (239)
                      |+|++... |.    +...+|+++++ .|+|||+|++.+.
T Consensus       154 D~I~~d~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          154 PLIFIDNA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SEEEEESS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CEEEECCc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            88887654 52    34679999997 9999999999775

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.24  E-value=0.00048  Score=59.78  Aligned_cols=74  Identities=14%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------------Ccccccc-ccCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQ-KILN  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~-~~p~  132 (239)
                      +..++.... |.+..+|||+|||+|.                                          +.+|+.+ +.+.
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            345555556 8888999999999998                                          3345554 2332


Q ss_pred             -c-ceeeechhhhcC-C-----hhHHHHHHHHHHhhCCCCceEEEE
Q 045543          133 -G-DAILMKLILRNW-D-----DEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       133 -~-D~~~l~~vlH~~-~-----d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                       . |++++.--.+.. .     .+.-..+++.+++.|+|||+++++
T Consensus       271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             3 888884322211 1     112368999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.24  E-value=0.00015  Score=59.88  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=27.6

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++...     ......+++++.+.|+|||.|++.+...
T Consensus       158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            88887533     2345789999999999999998766544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.21  E-value=0.00015  Score=63.89  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=43.5

Q ss_pred             cceEEEeCCCCCC----------------------------------------Ccccccc-ccCCc-ceeeechhhhcCC
Q 045543          109 IKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILNG-DAILMKLILRNWD  146 (239)
Q Consensus       109 ~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~~-D~~~l~~vlH~~~  146 (239)
                      .++|||||||+|.                                        +.+|..+ ++|+. |+++.-.+-+..-
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~  163 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLL  163 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccccc
Confidence            4789999999998                                        4556655 56754 9998643332222


Q ss_pred             -hhHHHHHHHHHHhhCCCCceEEE
Q 045543          147 -DEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       147 -d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                       +.....++....+.|+|||+++-
T Consensus       164 ~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          164 HESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccchhhhHHHHHHhhCCCCceECC
Confidence             33456888888999999998764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.21  E-value=0.00018  Score=57.46  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=43.0

Q ss_pred             CcceEEEeCCCCCC----------------------------------------CccccccccC--C-c-ceeeechhhh
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQKIL--N-G-DAILMKLILR  143 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p--~-~-D~~~l~~vlH  143 (239)
                      +..+|||+|||+|.                                        +.+|+.+..+  . . |+|++...+|
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            34799999999999                                        3445544222  2 3 9999877765


Q ss_pred             cCChhHHHHHHHHHHhh--CCCCceEEEEee
Q 045543          144 NWDDEHCLSLLKNCYEA--IPGNGKIIIIDS  172 (239)
Q Consensus       144 ~~~d~~~~~iL~~~~~a--L~pgg~lli~d~  172 (239)
                       +.  ....+++.+.+.  |+|||++++...
T Consensus       134 -~~--~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          134 -RG--LLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             -TT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             -CC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence             22  234677777664  999999987654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.20  E-value=0.00014  Score=58.05  Aligned_cols=38  Identities=8%  Similarity=0.056  Sum_probs=28.2

Q ss_pred             cceeeechhhhcCChhHHHHHHHHH--HhhCCCCceEEEEeee
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNC--YEAIPGNGKIIIIDST  173 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~--~~aL~pgg~lli~d~~  173 (239)
                      .|+|++...+| .  .+...+++.+  .+.|+|||++++....
T Consensus       126 fD~I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          126 FDVVFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EEEEEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CCEEEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            58999887765 3  3446788888  5679999999886543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.19  E-value=0.00014  Score=59.20  Aligned_cols=36  Identities=8%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++....     .....+++++.+.|+|||.|++.+...
T Consensus       131 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          131 QLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             EEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             CeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            999875432     334578999999999999988865544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.17  E-value=0.00014  Score=59.61  Aligned_cols=36  Identities=8%  Similarity=0.052  Sum_probs=27.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++.     .+......+++++.+.|+|||.|++.+...
T Consensus       149 D~I~~d-----~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~  184 (237)
T 3c3y_A          149 DFGFVD-----ADKPNYIKYHERLMKLVKVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEEC-----SCGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred             CEEEEC-----CchHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            888764     234456789999999999999887755443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.15  E-value=0.00027  Score=58.12  Aligned_cols=25  Identities=20%  Similarity=0.558  Sum_probs=21.0

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        18 ~~~i~~~~~-~~~~~~VLDiG~G~G~   42 (245)
T 1yub_A           18 LNQIIKQLN-LKETDTVYEIGTGKGH   42 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSS
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCCCH
Confidence            456777777 7778899999999999

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.15  E-value=7.2e-05  Score=59.81  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |++++..     +..+...+++++++.|+|||+|++.+...
T Consensus       128 D~v~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          128 DILFMDC-----DVFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             EEEEEET-----TTSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CEEEEcC-----ChhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            7776652     23345789999999999999998866544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.12  E-value=0.00022  Score=64.53  Aligned_cols=91  Identities=10%  Similarity=0.074  Sum_probs=57.3

Q ss_pred             HHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------
Q 045543           83 VLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------  121 (239)
Q Consensus        83 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------  121 (239)
                      .|..+.-......+..++..++ ..+..+|||+|||+|.                                         
T Consensus        77 ~~~~G~~~vQd~ss~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~  155 (464)
T 3m6w_A           77 FFYAGLYYIQEPSAQAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAV  155 (464)
T ss_dssp             HHHTTSEEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEE
T ss_pred             HHhCCeEEEECHHHHHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence            3444333333333334445555 6777899999999998                                         


Q ss_pred             Ccccccc-c--cCC-cceeee-------------chhhhcCChhHH-------HHHHHHHHhhCCCCceEEEEeeec
Q 045543          122 CGWKMFQ-K--ILN-GDAILM-------------KLILRNWDDEHC-------LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       122 ~~gD~~~-~--~p~-~D~~~l-------------~~vlH~~~d~~~-------~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      +.+|..+ +  .+. .|+|++             ..+...|+.++.       ..||+++.+.|+|||+|+.....+
T Consensus       156 ~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          156 TQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             ECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             EECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            2344433 1  233 399985             233444554444       789999999999999998866543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.11  E-value=0.00023  Score=63.64  Aligned_cols=75  Identities=12%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-c--cCC--c
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-K--ILN--G  133 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~--~p~--~  133 (239)
                      ++..++ ..+..+|||+|||+|.                                        +.+|+.+ +  ++.  .
T Consensus       238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence            334445 5667899999999998                                        3345544 1  332  3


Q ss_pred             ceeee------chhhhcCCh-------hHH-------HHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILM------KLILRNWDD-------EHC-------LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l------~~vlH~~~d-------~~~-------~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |+|++      ..+++..++       ++.       ..+|+++.+.|+|||+|++....+
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            99986      345554433       222       589999999999999999987644

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.10  E-value=0.00015  Score=59.19  Aligned_cols=37  Identities=11%  Similarity=0.081  Sum_probs=28.4

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |++++...     ..+...+++++.+.|+|||+|++.+...+
T Consensus       150 D~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          150 DLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             CEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            88876543     34457899999999999999988766543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.07  E-value=0.00021  Score=60.35  Aligned_cols=37  Identities=19%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++....+..+.+..  ..++++++++|+|||++++.
T Consensus       153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            99988544332222222  68999999999999999876

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.07  E-value=0.00064  Score=53.67  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------CccccccccCCc-ceeeechhhhcCChhH
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------CGWKMFQKILNG-DAILMKLILRNWDDEH  149 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~  149 (239)
                      ..+..+|||+|||+|.                                   +.+|+.+ +|.. |+|++...+|.+++..
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCch
Confidence            4456899999999998                                   2345544 4544 9999999999998766


Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...+++++.+.+  | .++++
T Consensus       128 ~~~~l~~~~~~~--g-~~~~~  145 (200)
T 1ne2_A          128 DRAFIDKAFETS--M-WIYSI  145 (200)
T ss_dssp             CHHHHHHHHHHE--E-EEEEE
T ss_pred             hHHHHHHHHHhc--C-cEEEE
Confidence            678999999998  4 45443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.07  E-value=0.00023  Score=61.21  Aligned_cols=39  Identities=10%  Similarity=0.272  Sum_probs=28.1

Q ss_pred             ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEEee
Q 045543          134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      |+|++....|......  ...+++++++.|+|||.+++.-.
T Consensus       161 DvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          161 DVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             EEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            9998865544332222  25899999999999999887643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.06  E-value=0.00049  Score=62.44  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeec
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .+||+++.+.|+|||+|++....+
T Consensus       226 ~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          226 RELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHhcCCCCEEEEecccC
Confidence            578999999999999998876544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.02  E-value=0.00013  Score=67.71  Aligned_cols=44  Identities=9%  Similarity=0.085  Sum_probs=36.7

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      |+|++..+||+.+|.+...-+.++.+.|+++++.++...+..+.
T Consensus       136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~  179 (569)
T 4azs_A          136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE  179 (569)
T ss_dssp             SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred             cEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence            99999999999998876666777888899999988887665543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.02  E-value=0.00027  Score=59.24  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------Cccccccc-cCCc-ceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQK-ILNG-DAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~-~p~~-D~~~l~~vl  142 (239)
                      +.+..+|||+|||+|.                                         +.+|.++. .+.. |+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            5667899999999999                                         34566553 2223 888776442


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                            ....+++++.+.|+|||++++.+....+
T Consensus       197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~~  224 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKDRGVIHYHETVAEK  224 (272)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             ------cHHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence                  3457899999999999999988776543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.99  E-value=0.00065  Score=54.85  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++...+|+..        +++.+.|+|||++++.
T Consensus       165 D~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          165 NAIHVGAAAPDTP--------TELINQLASGGRLIVP  193 (227)
T ss_dssp             EEEEECSCBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred             cEEEECCchHHHH--------HHHHHHhcCCCEEEEE
Confidence            9999999988765        6788999999999885

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.94  E-value=0.00049  Score=55.37  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=25.0

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++...+|+.        ++++++.|+|||++++..
T Consensus       153 D~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          153 DAIHVGAAAPVV--------PQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEECSBBSSC--------CHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCchHHH--------HHHHHHhcCCCcEEEEEE
Confidence            999988888755        467889999999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.92  E-value=0.00025  Score=59.58  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=25.8

Q ss_pred             ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++--..+..+.+.  ...++++++++|+|||.+++.
T Consensus       150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            8888844333222111  257899999999999998875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.89  E-value=0.00038  Score=59.74  Aligned_cols=38  Identities=16%  Similarity=0.033  Sum_probs=22.9

Q ss_pred             ceeeechhhhcCChhHH--HHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHC--LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~--~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++...-|.-+++..  ..+++++++.|+|||++++..
T Consensus       183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            88887443222122221  689999999999999998854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.89  E-value=0.00096  Score=54.95  Aligned_cols=25  Identities=16%  Similarity=0.595  Sum_probs=20.2

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        19 ~~~i~~~~~-~~~~~~VLDiG~G~G~   43 (244)
T 1qam_A           19 IDKIMTNIR-LNEHDNIFEIGSGKGH   43 (244)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSH
T ss_pred             HHHHHHhCC-CCCCCEEEEEeCCchH
Confidence            456666666 6777899999999999

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.85  E-value=0.0016  Score=57.46  Aligned_cols=75  Identities=8%  Similarity=0.022  Sum_probs=48.5

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------CccccccccC-Cc-ceeeec-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------CGWKMFQKIL-NG-DAILMK-  139 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------~~gD~~~~~p-~~-D~~~l~-  139 (239)
                      +..+++.++ .....+|||+|||+|.                                 +.+|+++..+ .. |+|+.. 
T Consensus        28 ~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NP  106 (421)
T 2ih2_A           28 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP  106 (421)
T ss_dssp             HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred             HHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECc
Confidence            344555555 4455699999999999                                 2456665333 23 999983 


Q ss_pred             ---------hhhhcCChhH-----------------HHHHHHHHHhhCCCCceEEEEe
Q 045543          140 ---------LILRNWDDEH-----------------CLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       140 ---------~vlH~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~d  171 (239)
                               +..++.+++.                 ...+++++.+.|+|||+++++-
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  164 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence                     1111122222                 2267999999999999998864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.84  E-value=0.001  Score=57.51  Aligned_cols=65  Identities=12%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             CCcceEEEeCCCCCC---------------------------------------------CccccccccC-Cc-ceeeec
Q 045543          107 EKIKQLVDVGGGCGK---------------------------------------------CGWKMFQKIL-NG-DAILMK  139 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~---------------------------------------------~~gD~~~~~p-~~-D~~~l~  139 (239)
                      ....+|+|+|||+|.                                             +.+|.+++.+ .. |+|+..
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            456899999999998                                             3456665444 23 999988


Q ss_pred             hhhhcCChhHH----------------HHHHHHHHhhCCCCceEEEEe
Q 045543          140 LILRNWDDEHC----------------LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       140 ~vlH~~~d~~~----------------~~iL~~~~~aL~pgg~lli~d  171 (239)
                      --++.++.++.                ..+++++.+.|+|||+++++-
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            77766654432                268999999999999998864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.82  E-value=0.00038  Score=59.13  Aligned_cols=20  Identities=20%  Similarity=0.488  Sum_probs=18.3

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+++++++.|+|||++++.
T Consensus       185 ~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          185 EEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEE
Confidence            68999999999999999885

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.82  E-value=0.00045  Score=59.79  Aligned_cols=37  Identities=11%  Similarity=0.070  Sum_probs=25.9

Q ss_pred             ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++....+....+.  ...++++++++|+|||+|++.
T Consensus       196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9998744321111111  368999999999999999885

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.82  E-value=0.00038  Score=59.84  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             ceeeechhhhcCC-hhHH--HHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWD-DEHC--LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~-d~~~--~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++... +.+. .+..  ..+++++++.|+|||.+++.
T Consensus       191 DvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          191 DVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            88887542 2222 1211  68999999999999999885

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.81  E-value=0.00039  Score=59.53  Aligned_cols=38  Identities=8%  Similarity=0.076  Sum_probs=28.2

Q ss_pred             ceeeechhhhc---CChhH--HHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRN---WDDEH--CLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~---~~d~~--~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++....|.   -+.+.  ...++++++++|+|||++++.-
T Consensus       153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            99998766544   11111  3689999999999999999863

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.81  E-value=0.00039  Score=59.31  Aligned_cols=38  Identities=16%  Similarity=0.009  Sum_probs=24.4

Q ss_pred             ceeeechhhhcCChh--HHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDE--HCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~--~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++....|..+..  ....+++++++.|+|||++++..
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            888885443322211  23578999999999999998854

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.74  E-value=0.0017  Score=54.75  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--~D~~~l~~vl  142 (239)
                      +.+..+|||+|||+|.                                         +.+|.++-.++  .|.|++..  
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~--  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY--  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC--
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC--
Confidence            4567899999999999                                         55677652233  48877642  


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                         + ..+...|..+.+.|+|||.|.+++.+.
T Consensus       201 ---p-~~~~~~l~~a~~~lk~gG~ih~~~~~~  228 (278)
T 3k6r_A          201 ---V-VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             ---C-SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ---C-CcHHHHHHHHHHHcCCCCEEEEEeeec
Confidence               2 223467888999999999998887764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.72  E-value=0.00066  Score=61.20  Aligned_cols=92  Identities=11%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             HHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------
Q 045543           82 EVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------  121 (239)
Q Consensus        82 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------  121 (239)
                      ..|..+.-......+..++..++ ..+..+|||+|||+|.                                        
T Consensus        80 ~~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv  158 (456)
T 3m4x_A           80 FLHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNA  158 (456)
T ss_dssp             HHHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSE
T ss_pred             hHHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence            34544433333333334455555 6777899999999997                                        


Q ss_pred             --Ccccccc--c-cCCc-ceeeec------hhh-------hcCChhH-------HHHHHHHHHhhCCCCceEEEEeeec
Q 045543          122 --CGWKMFQ--K-ILNG-DAILMK------LIL-------RNWDDEH-------CLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       122 --~~gD~~~--~-~p~~-D~~~l~------~vl-------H~~~d~~-------~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                        +.+|..+  + .+.. |+|++-      .++       ..|+.++       ...||+++.+.|+|||+|+.....+
T Consensus       159 ~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          159 IVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             EEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             EEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence              2345433  1 2333 998862      122       2333322       2489999999999999998876543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.72  E-value=0.0014  Score=61.25  Aligned_cols=91  Identities=21%  Similarity=0.196  Sum_probs=60.6

Q ss_pred             ccccccCchHHHHHHHHHHhcccccHHHHHhhcc---CCCCcceEEEeCCCCCC--------------------------
Q 045543           71 YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYK---GFEKIKQLVDVGGGCGK--------------------------  121 (239)
Q Consensus        71 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvGGG~G~--------------------------  121 (239)
                      |+.+++||-.-+.|.+|+..       .+.+..+   .-.+...|+|||+|+|.                          
T Consensus       324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~  396 (637)
T 4gqb_A          324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN  396 (637)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred             hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            44456788777778887753       2222211   02345789999999997                          


Q ss_pred             -------------------Ccccccc-ccCC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEE
Q 045543          122 -------------------CGWKMFQ-KILN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       122 -------------------~~gD~~~-~~p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                                         +.||+.+ ..|+ .|+++.-..=.....|-...+|-...+-|+|||.++
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence                               7788877 7886 499886554332334445567777788999998753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.70  E-value=0.0033  Score=53.33  Aligned_cols=68  Identities=13%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCcce
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNGDA  135 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~D~  135 (239)
                      ...+++..+ ..+..+|||||||+|.                                       +.+|+.+ +.+..|+
T Consensus        31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~  109 (299)
T 2h1r_A           31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDV  109 (299)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSE
T ss_pred             HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCE
Confidence            456666666 6777899999999999                                       3455554 3333488


Q ss_pred             eeechhhhcCChhHHHHHHH---------------HHHhhCCCCc
Q 045543          136 ILMKLILRNWDDEHCLSLLK---------------NCYEAIPGNG  165 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~---------------~~~~aL~pgg  165 (239)
                      |++ +.-++|+.+....+|+               .+.+.++|+|
T Consensus       110 Vv~-n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          110 CTA-NIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             EEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             EEE-cCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            876 5556677777777773               3567787765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.46  E-value=0.0018  Score=52.05  Aligned_cols=30  Identities=27%  Similarity=0.233  Sum_probs=25.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+|++...+|+.        ++++.+.|+|||++++.-
T Consensus       164 D~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          164 DAIHVGASASEL--------PEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             EEEEECSBBSSC--------CHHHHHHEEEEEEEEEEE
T ss_pred             CEEEECCchHHH--------HHHHHHhcCCCcEEEEEE
Confidence            999988888754        578899999999999864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.43  E-value=0.0054  Score=48.37  Aligned_cols=55  Identities=16%  Similarity=0.139  Sum_probs=40.8

Q ss_pred             CCCcceEEEeCCCCCC---------------------------------------CccccccccCCc-ceeeechhhhcC
Q 045543          106 FEKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILNG-DAILMKLILRNW  145 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~~-D~~~l~~vlH~~  145 (239)
                      ..+..+|||+|||+|.                                       +.+|+.+ +|.. |+|++.-.+|.+
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence            3456799999999998                                       2234433 4434 999998888888


Q ss_pred             ChhHHHHHHHHHHhhC
Q 045543          146 DDEHCLSLLKNCYEAI  161 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL  161 (239)
                      .......+|+++.+.+
T Consensus       126 ~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          126 RKHADRPFLLKAFEIS  141 (207)
T ss_dssp             STTTTHHHHHHHHHHC
T ss_pred             cCCchHHHHHHHHHhc
Confidence            7655578889988888

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.33  E-value=0.034  Score=47.96  Aligned_cols=81  Identities=10%  Similarity=0.110  Sum_probs=55.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH---h-hccCC-ccccChhh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM---L-MQLSG-EKERTKQE  208 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m---l-~~~~~-g~~rt~~e  208 (239)
                      .+++.-.+|+.++.+++..+|+.+.+.. |+|.+++.|.+.+..+..+    +...+--++   . ....+ ....|.++
T Consensus       196 tl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~----fg~~m~~~l~~~rg~~l~~~~~y~s~~~  270 (334)
T 1rjd_A          196 TIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR----FGAIMQSNLKESRNLEMPTLMTYNSKEK  270 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC----HHHHHHHHHHHHHCCCCTTTTTTCSHHH
T ss_pred             EEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch----HHHHHHHHhhcccCCcccccccCCCHHH
Confidence            7899999999999999999999999987 7888889999877432221    111110000   0 00111 12347788


Q ss_pred             ccHHHHHhhCCCc
Q 045543          209 YYGMALTAKNGFK  221 (239)
Q Consensus       209 ~~~~~ll~~aGf~  221 (239)
                      .  .+.|.++||+
T Consensus       271 ~--~~rl~~~Gf~  281 (334)
T 1rjd_A          271 Y--ASRWSAAPNV  281 (334)
T ss_dssp             H--HGGGTTSSEE
T ss_pred             H--HHHHHHCCCC
Confidence            8  9999999997

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.09  E-value=0.011  Score=51.64  Aligned_cols=16  Identities=19%  Similarity=0.061  Sum_probs=14.4

Q ss_pred             CCCcceEEEeCCCCCC
Q 045543          106 FEKIKQLVDVGGGCGK  121 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~  121 (239)
                      +.+..+|||+|||+|.
T Consensus       215 ~~~~~~vLD~gCGsG~  230 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGT  230 (373)
T ss_dssp             TCCSCCEEETTCTTCH
T ss_pred             cCCCCEEEEccCcCcH
Confidence            5677899999999999

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=96.08  E-value=0.0069  Score=41.22  Aligned_cols=57  Identities=12%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKYV   63 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~l   63 (239)
                      |.+.|.+.++|.++|+.|||+++|+    +...+.+.|.-|...     ....++.|...+....+
T Consensus        15 IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~   76 (81)
T 1qbj_A           15 ILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW   76 (81)
T ss_dssp             HHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred             HHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence            5567777665668999999999999    999999999999775     23445888888766443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.07  E-value=0.0038  Score=52.01  Aligned_cols=30  Identities=13%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++.     .+|..  ..+++++++|+|||.+++.
T Consensus       141 D~Ii~d-----~~dp~--~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          141 DLIFCL-----QEPDI--HRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             EEEEES-----SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred             CEEEEC-----CCChH--HHHHHHHHhcCCCcEEEEE
Confidence            666653     34443  4899999999999999885

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.07  E-value=0.0064  Score=52.40  Aligned_cols=25  Identities=16%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeee
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +...+++++.+.|+|||.+++....
T Consensus       250 ~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          250 HLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCcCcEEEEEECC
Confidence            4568999999999999997775443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.03  E-value=0.0045  Score=52.45  Aligned_cols=24  Identities=13%  Similarity=-0.029  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEe
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +.+..+|+.+++.|+|||++++..
T Consensus       148 ~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          148 GFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            345689999999999999999864

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=96.00  E-value=0.0028  Score=41.43  Aligned_cols=49  Identities=10%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLA   57 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t   57 (239)
                      |.+.|.+++  +++|..|||+++|+    +...+.+++..|...   .....|.|+++
T Consensus        15 IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~~G~y~lg   66 (67)
T 2heo_A           15 ILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPSPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred             HHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence            667787643  58999999999999    999999999999886   22445778754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.00  E-value=0.0026  Score=53.38  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             ceeeechhhhcCChhH--HHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEH--CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~--~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++....|..+.+.  ...+++++++.|+|||.+++.
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            8888754433222222  268899999999999999886

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.98  E-value=0.0029  Score=55.45  Aligned_cols=25  Identities=4%  Similarity=0.022  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      +....+++++.+.|+|||.|++...
T Consensus       302 ~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          302 RAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            4557899999999999999988764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=95.98  E-value=0.012  Score=49.25  Aligned_cols=75  Identities=11%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC------------------Ccccc--------------c------c--ccCC--cce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK------------------CGWKM--------------F------Q--KILN--GDA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~------------------~~gD~--------------~------~--~~p~--~D~  135 (239)
                      .+.+..- +....+|||+|||+|.                  ++.|.              .      +  .++.  .|+
T Consensus        65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl  143 (277)
T 3evf_A           65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDT  143 (277)
T ss_dssp             HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccE
Confidence            4444443 6777899999999999                  22221              0      0  1222  388


Q ss_pred             eeechhhh---cCChh-HHHHHHHHHHhhCCCC-ceEEEEeeec
Q 045543          136 ILMKLILR---NWDDE-HCLSLLKNCYEAIPGN-GKIIIIDSTT  174 (239)
Q Consensus       136 ~~l~~vlH---~~~d~-~~~~iL~~~~~aL~pg-g~lli~d~~~  174 (239)
                      |+.....|   .|-|+ ....+|+-+.+.|+|| |.+++ ..+.
T Consensus       144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA  186 (277)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred             EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence            88766444   13233 3346789999999999 99887 4443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.93  E-value=0.0091  Score=64.04  Aligned_cols=82  Identities=11%  Similarity=0.087  Sum_probs=31.9

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMA  213 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~  213 (239)
                      |+|+.+++||.-++.  ...|+++++.|+|||++++.+...+..-..     ...+++-.   ...++...+.++|  .+
T Consensus      1313 dlvia~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~-----~~~~~~~~---~r~~~~~~~~~~w--~~ 1380 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHPLGE-----MVGFLTSP---EQGGRHLLSQDQW--ES 1380 (2512)
T ss_dssp             CEEEEECC----------------------CCEEEEEEC----------------------------------CTT--TT
T ss_pred             eEEEEcccccccccH--HHHHHHHHHhcCCCcEEEEEeccccccccc-----cccccccc---cccCCcccCHHHH--HH
Confidence            999999999965543  478999999999999999987532110000     00000000   0001234577899  99


Q ss_pred             HHhhCCCceeeEEE
Q 045543          214 LTAKNGFKGVNYES  227 (239)
Q Consensus       214 ll~~aGf~~~~~~~  227 (239)
                      +|.++||..+....
T Consensus      1381 ~l~~~gf~~~~~~~ 1394 (2512)
T 2vz8_A         1381 LFAGASLHLVALKR 1394 (2512)
T ss_dssp             SSTTTTEEEEEEEE
T ss_pred             HHHhCCCceeeecc
Confidence            99999999876543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.75  E-value=0.0041  Score=54.75  Aligned_cols=25  Identities=4%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      .....+++++.+.|+|||+|++...
T Consensus       312 ~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          312 RAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            4567899999999999999988765

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=95.60  E-value=0.014  Score=42.21  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC--CCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM--PSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~--g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~   64 (239)
                      |.+.|.+.   +++|+.+||+.+  ++    ++..+.+-|+.|...   .....+.|.+|+.++.++
T Consensus        18 IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l   77 (111)
T 3b73_A           18 ILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYL   77 (111)
T ss_dssp             HHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHH
Confidence            56778764   699999999999  99    999999999999987   223445899999999887

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=95.60  E-value=0.0052  Score=51.53  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=43.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|++.+  +++|+.|||+++|+    +...+.|+|+.|+..  . ...+++|.+++....|
T Consensus        34 ~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~l   92 (275)
T 3mq0_A           34 RILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRW   92 (275)
T ss_dssp             HHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHH
T ss_pred             HHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHH
Confidence            4678888754  68999999999999    999999999999998  2 2235789999876554

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=95.55  E-value=0.0072  Score=40.66  Aligned_cols=52  Identities=13%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecCh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAP   58 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~   58 (239)
                      |.+.|.+.+++.++|+.|||+++|+    +...+.+.|+-|...     ....++.|..+|
T Consensus        19 IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~   75 (77)
T 1qgp_A           19 ILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred             HHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence            4566777644458999999999999    999999999999764     234457787665

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.54  E-value=0.0095  Score=52.57  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=44.2

Q ss_pred             CcceEEEeCCCCCC--------------------------------------Ccccccccc---CC-cceeeechhhhcC
Q 045543          108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQKI---LN-GDAILMKLILRNW  145 (239)
Q Consensus       108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~~~---p~-~D~~~l~~vlH~~  145 (239)
                      +..+|||+|||+|.                                      ..+|.++.+   +. .|+|++---....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            46899999999999                                      245666522   22 3888863211000


Q ss_pred             C-------hhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          146 D-------DEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       146 ~-------d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +       -..-..+++.+.+.|+|||+|+++...
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            0       123468999999999999999877654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.51  E-value=0.018  Score=54.35  Aligned_cols=91  Identities=20%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             ccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------
Q 045543           71 YEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------  121 (239)
Q Consensus        71 ~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------  121 (239)
                      |+.+.+|+-+-+.|.+|+...       +.+..+.-.+...|+|||||+|.                             
T Consensus       379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA  451 (745)
T 3ua3_A          379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI  451 (745)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence            444556777667777777542       22222111245789999999998                             


Q ss_pred             -------------------------Ccccccc-cc------CC-cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEE
Q 045543          122 -------------------------CGWKMFQ-KI------LN-GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKII  168 (239)
Q Consensus       122 -------------------------~~gD~~~-~~------p~-~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~ll  168 (239)
                                               +.||+.+ ..      |+ .|+++.-..=.....|-....|..+.+-|+|||.++
T Consensus       452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence                                     4566655 45      44 498876655322244545677888889999999643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=95.24  E-value=0.0086  Score=51.55  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             CCcceEEEeCCCCCC---------------------------------------CccccccccCCcceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK---------------------------------------CGWKMFQKILNGDAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~~p~~D~~~l~~vlH~~~d  147 (239)
                      .+..+|||+|||+|.                                       +.+|.++.....|+|++.     .+ 
T Consensus       194 ~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d-----pP-  267 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN-----LP-  267 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC-----CT-
T ss_pred             CCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC-----Cc-
Confidence            456899999999996                                       234544422123888763     11 


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      .....+++.+.+.|+|||.+++++...
T Consensus       268 ~~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          268 KFAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            223488999999999999999887653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.15  E-value=0.16  Score=43.25  Aligned_cols=84  Identities=10%  Similarity=0.006  Sum_probs=53.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhcc--------CCccc-c
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQL--------SGEKE-R  204 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~--------~~g~~-r  204 (239)
                      =++++-.+||.+++++...+|+.+.+.+.||+.| +.|.+.++....  ......... ..+...        ..-.. +
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l-~~d~~~~~~~~~--~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~  256 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRI-AVETSPLHGDEW--REQMQLRFR-RVSDALGFEQAVDVQELIYHD  256 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEE-EEECCCTTCSHH--HHHHHHHHH-HHHC-----------CCTTCC
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEE-EEEecCCCCcch--hHHHHHHHH-HHHHHcCCcCCCCccccccCC
Confidence            4788899999999999999999999999999866 456655443100  000000000 001000        01122 2


Q ss_pred             C-hhhccHHHHHhhCCCcee
Q 045543          205 T-KQEYYGMALTAKNGFKGV  223 (239)
Q Consensus       205 t-~~e~~~~~ll~~aGf~~~  223 (239)
                      + .++.  .++|.+.||+.+
T Consensus       257 ~~~~~~--~~~f~~~G~~~~  274 (310)
T 2uyo_A          257 ENRAVV--ADWLNRHGWRAT  274 (310)
T ss_dssp             TTCCCH--HHHHTTTTEEEE
T ss_pred             CChHHH--HHHHHHCcCccc
Confidence            5 6788  999999999988

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.09  E-value=0.017  Score=48.47  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC------------------Ccc-----------------------ccccccCC--
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------CGW-----------------------KMFQKILN--  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------~~g-----------------------D~~~~~p~--  132 (239)
                      ..++.+.+- +....+|||+|||+|.                  +..                       |++ .++.  
T Consensus        79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~  156 (282)
T 3gcz_A           79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEVIP  156 (282)
T ss_dssp             HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCCCC
Confidence            345666664 7888899999999999                  111                       111 1222  


Q ss_pred             cceeeechhhh----cCChhHHHHHHHHHHhhCCCC--ceEEE
Q 045543          133 GDAILMKLILR----NWDDEHCLSLLKNCYEAIPGN--GKIII  169 (239)
Q Consensus       133 ~D~~~l~~vlH----~~~d~~~~~iL~~~~~aL~pg--g~lli  169 (239)
                      .|+|+.-..-+    ..+......+|+-+.+.|+||  |.+++
T Consensus       157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~  199 (282)
T 3gcz_A          157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI  199 (282)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence            38887765554    122223346788888999999  98777

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.04  E-value=0.014  Score=47.79  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l~   64 (239)
                      .|.+.|.+.+  +++|+.|||+++|+    +...+.|+|+.|...  .  ..+.++|.+++....|-
T Consensus        10 ~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~lg   70 (241)
T 2xrn_A           10 SIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLI   70 (241)
T ss_dssp             HHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHHH
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHHH
Confidence            4667777643  58999999999999    999999999999997  2  23348899988765553

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.95  E-value=0.013  Score=52.33  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhCCCCceEEEEe
Q 045543          151 LSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ..+++++.+.|+|||++.++-
T Consensus       287 ~~fl~~~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          287 LNFLQHMMLMLKTGGRAAVVL  307 (445)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEE
Confidence            478999999999999998864

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=94.90  E-value=0.02  Score=38.67  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=41.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChh-hHHHHHHHhccC-----CCCCCCeEecChhhHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAV-MLDRVLRRSLSS-----AGDDRRLQRLAPVAKY   62 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~-~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~   62 (239)
                      |.+.|...   +|.|+.+||+.+|+    .+. .+.+.|..|...     .....-.|.+|+.++.
T Consensus        16 IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~   74 (79)
T 1xmk_A           16 ICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHT
T ss_pred             HHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHh
Confidence            45667775   69999999999999    898 999999999886     1122238999988753

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=94.88  E-value=0.0079  Score=49.93  Aligned_cols=56  Identities=9%  Similarity=0.141  Sum_probs=44.6

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|++.+  +++|+.|||+++|+    +...+.|+|+.|+..  .  ..+.++|.+++....|
T Consensus        10 ~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~l   69 (260)
T 3r4k_A           10 TLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRL   69 (260)
T ss_dssp             HHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHH
T ss_pred             HHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHH
Confidence            4566776532  68999999999999    999999999999998  2  2334899998876554

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=94.68  E-value=0.035  Score=48.94  Aligned_cols=25  Identities=12%  Similarity=0.151  Sum_probs=20.0

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..++.... |.+...|+|.+||+|.
T Consensus       190 Aa~ll~l~~-~~~~~~vlDp~CGSGt  214 (393)
T 3k0b_A          190 AAALVLLTS-WHPDRPFYDPVCGSGT  214 (393)
T ss_dssp             HHHHHHHSC-CCTTSCEEETTCTTSH
T ss_pred             HHHHHHHhC-CCCCCeEEEcCCCCCH
Confidence            445555556 8888999999999997

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.68  E-value=0.014  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhCCCCceEEEEe
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ....+++.+.+.|+|||.|++..
T Consensus       309 ~~~~ll~~~~~~L~pgG~l~~~~  331 (385)
T 2b78_A          309 DYHKLIRQGLEILSENGLIIAST  331 (385)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEe
Confidence            34578999999999999988764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.62  E-value=0.0098  Score=56.43  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEe
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      ..-..+++++.+.|+|||+|++.-
T Consensus       634 ~~~~~ll~~a~~~LkpgG~L~~s~  657 (703)
T 3v97_A          634 RDHLALMKDLKRLLRAGGTIMFSN  657 (703)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            456789999999999999998643

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=94.62  E-value=0.028  Score=46.22  Aligned_cols=56  Identities=7%  Similarity=-0.022  Sum_probs=44.6

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC-CCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG-DDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~-~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|.+.+  +++|+.|||+++|+    +...+.|+|+.|...  .+ ...++|.+++....+
T Consensus        12 ~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l   70 (249)
T 1mkm_A           12 EILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEY   70 (249)
T ss_dssp             HHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHH
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHH
Confidence            4667777643  58999999999999    999999999999987  22 246889998875444

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=94.58  E-value=0.013  Score=48.48  Aligned_cols=56  Identities=13%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      |.+.|.+.+  +++|+.|||+++|+    +...+.|+|+.|...  .+.++++|.+++....|-
T Consensus        19 iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           19 VLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECGGGHHHH
T ss_pred             HHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHHHH
Confidence            455665432  68999999999999    999999999999987  333468999998765553

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.56  E-value=0.094  Score=46.02  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..++.... |.+...++|.+||+|.
T Consensus       183 Aaall~l~~-~~~~~~llDp~CGSGt  207 (384)
T 3ldg_A          183 AAAIILLSN-WFPDKPFVDPTCGSGT  207 (384)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSH
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCcCCH
Confidence            445555555 8888999999999998

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=94.54  E-value=0.029  Score=41.13  Aligned_cols=53  Identities=11%  Similarity=-0.027  Sum_probs=38.7

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCC-CCCeEecChhh
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGD-DRRLQRLAPVA   60 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~-~~~~y~~t~~s   60 (239)
                      ...|+.+..+++.|.+|||+++++    ++..+.++|+.|...    ... ..|.|.++.-.
T Consensus        15 L~~la~~~~~~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~   72 (129)
T 2y75_A           15 MIELAKKHGEGPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP   72 (129)
T ss_dssp             HHHHHHTTTSCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred             HHHHHhCCCCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence            345555322378999999999999    999999999999987    122 24778887543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=94.22  E-value=0.08  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=17.3

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      .+++.++ ..+..+|+|+|||+|.
T Consensus       277 ~~~~~l~-~~~~~~VLDlgcG~G~  299 (433)
T 1uwv_A          277 RALEWLD-VQPEDRVLDLFCGMGN  299 (433)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTTT
T ss_pred             HHHHhhc-CCCCCEEEECCCCCCH
Confidence            3444444 5666899999999999

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=94.18  E-value=0.029  Score=38.88  Aligned_cols=49  Identities=14%  Similarity=0.109  Sum_probs=40.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAK   61 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~   61 (239)
                      |++.| +    ++.|+.|||+.+|+    ++..+.+.|+.|...   .... +.|.+++.++
T Consensus        36 Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~   87 (96)
T 1y0u_A           36 ILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGK   87 (96)
T ss_dssp             HHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTC
T ss_pred             HHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCch
Confidence            56677 5    68999999999999    999999999999887   2222 6899988653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=94.14  E-value=0.027  Score=49.49  Aligned_cols=24  Identities=4%  Similarity=0.073  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEe
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +....++.++.+.|+|||.+++..
T Consensus       316 ~~~~~~l~~~~~~LkpgG~l~~~~  339 (396)
T 3c0k_A          316 RGYKDINMLAIQLLNEGGILLTFS  339 (396)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            456789999999999999988864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.07  E-value=0.052  Score=45.93  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~   63 (295)
T 3gru_A           39 VNKAVESAN-LTKDDVVLEIGLGKGI   63 (295)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSH
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCchH
Confidence            456666666 7777899999999999

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=94.03  E-value=0.011  Score=49.29  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhh
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVA   60 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s   60 (239)
                      .|.+.|.+.+  +++|+.|||+++|+    +...+.|+|+.|...  .+.++++|.+++..
T Consensus        25 ~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~   79 (265)
T 2ia2_A           25 AVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATDGSAFWLTPRV   79 (265)
T ss_dssp             HHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEESSSEEEECGGG
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCEEEEcHHH
Confidence            3556665432  68999999999999    999999999999986  33346899998765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=93.74  E-value=0.069  Score=46.82  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=19.6

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..++.... |.+..+|+|.+||+|.
T Consensus       184 Aa~ll~~~~-~~~~~~vlDp~CGSGt  208 (385)
T 3ldu_A          184 AAGLIYLTP-WKAGRVLVDPMCGSGT  208 (385)
T ss_dssp             HHHHHHTSC-CCTTSCEEETTCTTCH
T ss_pred             HHHHHHhhC-CCCCCeEEEcCCCCCH
Confidence            344555555 8888999999999997

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=93.66  E-value=0.082  Score=44.14  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=39.2

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC------------------------------------Ccccccc-ccCC--ccee
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILN--GDAI  136 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~--~D~~  136 (239)
                      ...+++..+ ..+. +|||||||+|.                                    +.+|+++ +++.  ....
T Consensus        36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~  113 (271)
T 3fut_A           36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL  113 (271)
T ss_dssp             HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred             HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence            345666666 6666 99999999999                                    5567766 4543  2345


Q ss_pred             eechhhhcCChhHHHHHHHH
Q 045543          137 LMKLILRNWDDEHCLSLLKN  156 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~  156 (239)
                      +++|.-.+.+.+-..++|..
T Consensus       114 iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          114 LVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EEEEECSSCCHHHHHHHHHH
T ss_pred             EEecCcccccHHHHHHHhcC
Confidence            66676666666655555554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=93.61  E-value=0.054  Score=48.21  Aligned_cols=15  Identities=20%  Similarity=0.403  Sum_probs=13.1

Q ss_pred             CCcceEEEeCCCCCC
Q 045543          107 EKIKQLVDVGGGCGK  121 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~  121 (239)
                      .+..+|||+|||+|.
T Consensus       289 ~~~~~VLDlgcG~G~  303 (425)
T 2jjq_A          289 VEGEKILDMYSGVGT  303 (425)
T ss_dssp             CCSSEEEEETCTTTH
T ss_pred             CCCCEEEEeeccchH
Confidence            455799999999999

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=93.57  E-value=0.032  Score=46.18  Aligned_cols=56  Identities=13%  Similarity=0.069  Sum_probs=42.3

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l   63 (239)
                      .|.+.|.+.+  +++|+.|||+++|+    +...+.|+|+.|...  . ....++|.+++....|
T Consensus        27 ~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~l   85 (260)
T 2o0y_A           27 DLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRW   85 (260)
T ss_dssp             HHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred             HHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHH
Confidence            3556665422  68999999999999    999999999999987  2 2223389998875444

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=93.45  E-value=0.06  Score=40.44  Aligned_cols=52  Identities=13%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK   61 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~   61 (239)
                      .|+.++.+++.|.+|||+++++    ++..++++|..|...     ..-..|.|.++.-..
T Consensus        19 ~La~~~~~~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~   75 (143)
T 3t8r_A           19 SLAKKEGQGCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE   75 (143)
T ss_dssp             HHHTTTTSCCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred             HHHhCCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence            4554332368999999999999    999999999999886     223357798875543

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=92.96  E-value=0.11  Score=39.84  Aligned_cols=51  Identities=12%  Similarity=-0.005  Sum_probs=38.9

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhh
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVA   60 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s   60 (239)
                      .|+....+++.|.++||+++++    ++..++++|..|...     ..-.+|.|.++.-.
T Consensus        35 ~LA~~~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p   90 (159)
T 3lwf_A           35 ELAKRIGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP   90 (159)
T ss_dssp             HHHHTTTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred             HHHhcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence            3454333468999999999999    999999999999886     22335778887554

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=92.65  E-value=0.12  Score=34.78  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.   +.+|++|||+.+++    ++..++|-|+.|...
T Consensus         7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~   43 (78)
T 1xn7_A            7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESM   43 (78)
T ss_dssp             HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            56777775   69999999999999    999999999999886

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.52  E-value=0.32  Score=41.01  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=24.4

Q ss_pred             ceeeechhhh----cCChhHHHHHHHHHHhhCCCC-ceEEEE
Q 045543          134 DAILMKLILR----NWDDEHCLSLLKNCYEAIPGN-GKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH----~~~d~~~~~iL~~~~~aL~pg-g~lli~  170 (239)
                      |+++.-..-+    ..+......+|+-+.+.|+|| |.+++-
T Consensus       149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            7777644433    112223356788889999999 988874

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=92.13  E-value=0.11  Score=36.17  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=37.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCCeEecChh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRRLQRLAPV   59 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~~y~~t~~   59 (239)
                      |...|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...      .....-.|++|+.
T Consensus        28 Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~   82 (102)
T 3pqk_A           28 LVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA   82 (102)
T ss_dssp             HHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred             HHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence            5566765    68999999999999    999999999999876      1122345777764

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.06  E-value=0.32  Score=40.28  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ..++-+.+ -+.+..+|||+||++|.
T Consensus        62 L~EIdeK~-likpg~~VVDLGaAPGG   86 (269)
T 2px2_A           62 LRWLVERR-FVQPIGKVVDLGCGRGG   86 (269)
T ss_dssp             HHHHHHTT-SCCCCEEEEEETCTTSH
T ss_pred             HHHHHHcC-CCCCCCEEEEcCCCCCH
Confidence            34556665 37888999999999998

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=92.05  E-value=0.12  Score=36.55  Aligned_cols=52  Identities=12%  Similarity=0.136  Sum_probs=39.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--CC--CCCeEecChhhHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--GD--DRRLQRLAPVAKY   62 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~~--~~~~y~~t~~s~~   62 (239)
                      |...|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...  .  ..  ....|.+|+....
T Consensus        26 IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~   83 (114)
T 2oqg_A           26 ILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELN   83 (114)
T ss_dssp             HHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHH
T ss_pred             HHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHH
Confidence            5566744    68999999999999    999999999999876  1  11  1223888877643

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=91.91  E-value=0.12  Score=35.45  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=33.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.   +.+|++|||+.+++    ++..++|.|+.|...
T Consensus         7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~   43 (87)
T 2k02_A            7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAM   43 (87)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            56777775   69999999999999    999999999999987

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=91.70  E-value=0.17  Score=41.80  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=20.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~   42 (255)
T 3tqs_A           18 LQKIVSAIH-PQKTDTLVEIGPGRGA   42 (255)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTTT
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccccH
Confidence            456677776 7778899999999999

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=91.57  E-value=0.15  Score=35.43  Aligned_cols=45  Identities=9%  Similarity=0.052  Sum_probs=40.1

Q ss_pred             CCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543           16 LSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        16 ~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      ++..+||..+|+    +++.+.+.++.|...  .+...+.|.+|+-++.++
T Consensus        21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l   67 (95)
T 1r7j_A           21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELL   67 (95)
T ss_dssp             BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred             CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence            899999999999    999999999999998  444467799999998776

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=91.48  E-value=0.19  Score=37.00  Aligned_cols=47  Identities=9%  Similarity=0.052  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~~~y~~t~~s~~l~   64 (239)
                      ++.|..+||+.+++    ++..+.++++.|...  . ....+.|.+|+.++.+.
T Consensus        21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHH
Confidence            68999999999999    999999999999987  2 22347899999987665

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=91.44  E-value=0.1  Score=34.77  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+++|.++|  .|+++.|||+++|+    +..-+.+.|..|-..
T Consensus        24 VLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkE   61 (80)
T 2lnb_A           24 ILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKE   61 (80)
T ss_dssp             HHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHc
Confidence            678888877  89999999999999    999999999998765

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=91.42  E-value=0.11  Score=35.71  Aligned_cols=54  Identities=11%  Similarity=0.088  Sum_probs=41.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C------CCCCCeEecChhhHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A------GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~------~~~~~~y~~t~~s~~l   63 (239)
                      |+..|...   ++.|..|||+.+++    ++..+.+.|+.|...   .      ......|.+|+.+...
T Consensus        21 iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~   83 (100)
T 1ub9_A           21 IMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE   83 (100)
T ss_dssp             HHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred             HHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence            55666543   58999999999999    999999999999876   1      1122358889887543

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=91.39  E-value=0.099  Score=35.03  Aligned_cols=29  Identities=10%  Similarity=0.040  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      +|.|+.|||+.+|+    ++..+++-|..|...
T Consensus        23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~k   51 (77)
T 2jt1_A           23 APVKTRDIADAAGL----SIYQVRLYLEQLHDV   51 (77)
T ss_dssp             SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            79999999999999    999999999999886

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=91.29  E-value=0.2  Score=41.12  Aligned_cols=63  Identities=8%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhhHHHHhc--CCCccc
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVAKYVLHY--GIGDYE   72 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s~~l~~~--g~~~~~   72 (239)
                      |...|.+.   +++|..|||+++|+    ++..+.|.|+.|...    .......|.+|+.++.+...  ..+.|+
T Consensus       157 IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~~~~w~  225 (244)
T 2wte_A          157 LLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKSVIESS  225 (244)
T ss_dssp             HHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC------
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhcccccH
Confidence            44566554   58999999999999    999999999999987    22346789999999887632  345554

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=91.17  E-value=0.096  Score=36.18  Aligned_cols=50  Identities=14%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVA   60 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s   60 (239)
                      |...|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...  .    ......|.+++..
T Consensus        28 Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~   83 (98)
T 3jth_A           28 ILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE   83 (98)
T ss_dssp             HHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred             HHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence            4566665    69999999999999    999999999999876  1    1223457777654

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=91.15  E-value=0.27  Score=34.91  Aligned_cols=54  Identities=13%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      |...|.+    ++.|..|||+.+ ++    ++..+.+.|+.|...  .    .   ...-.|.+|+.++.+.
T Consensus        27 IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           27 LMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             HHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence            3445665    689999999999 99    999999999999886  1    1   1223489999987765

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=91.00  E-value=0.32  Score=34.58  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             CCCC--HHHHHHhC-CCCCCCChhhHHHHHHHhccC--CCC---CCCeEecChhhHHHH
Q 045543           14 AKLS--AAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--AGD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t--~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~~~---~~~~y~~t~~s~~l~   64 (239)
                      ++.+  ..||++.+ |+    ++..+.+.|+.|...  .+.   ..-.|.+|+.++.+.
T Consensus        39 g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           39 GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVR   93 (111)
T ss_dssp             SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHH
T ss_pred             CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHH
Confidence            6877  99999999 99    999999999999987  211   356799999998765

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=90.87  E-value=0.2  Score=33.39  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=32.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.   ++.|..|||+.+|+    ++..+.+.|+.|...
T Consensus         5 Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~   41 (81)
T 2htj_A            5 ILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKA   41 (81)
T ss_dssp             HHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            56677764   58999999999999    999999999999885

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=90.67  E-value=0.22  Score=35.06  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..|||+.+ ++    ++..+.+.|+.|...  .    .   ...-.|.+|+.++.+.
T Consensus        26 ~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           26 GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   82 (107)
T ss_dssp             CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence            799999999999 99    999999999999987  1    1   1123589998876543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=90.57  E-value=0.25  Score=41.87  Aligned_cols=22  Identities=9%  Similarity=-0.019  Sum_probs=17.1

Q ss_pred             HHhhccCCCCcceEEEeCCCCCC
Q 045543           99 ILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        99 ~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ++..++ ..+..+|||+|||+|.
T Consensus        94 ~~~~l~-~~~g~~VLDlcaG~G~  115 (309)
T 2b9e_A           94 PAMLLD-PPPGSHVIDACAAPGN  115 (309)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCH
T ss_pred             HHHHhC-CCCCCEEEEeCCChhH
Confidence            334455 6677899999999998

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=90.50  E-value=0.12  Score=43.59  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|+++|+|||.++..
T Consensus       178 ~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          178 SAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEe
Confidence            46799999999999988875

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=90.17  E-value=0.16  Score=38.28  Aligned_cols=43  Identities=5%  Similarity=0.034  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhh
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVA   60 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s   60 (239)
                      ++.|++|||+++++    ++..++++|..|...    ...+.|.|.++.-.
T Consensus        29 ~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p   75 (149)
T 1ylf_A           29 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL   75 (149)
T ss_dssp             GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence            68999999999999    999999999999887    22237789887654

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=90.17  E-value=0.31  Score=33.55  Aligned_cols=55  Identities=9%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             cchHhHhcCCCCCCCHHHH----HHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEI----EAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eL----A~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s~~l~   64 (239)
                      |+..|.+.   ++.|..||    |+.+++    ++..+.++++.|...  .    ......|.+|+.++.++
T Consensus        13 iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           13 VLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence            45556653   68999999    999999    999999999999986  1    12345688999988765

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=90.13  E-value=0.25  Score=36.53  Aligned_cols=47  Identities=15%  Similarity=0.029  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C-------CCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A-------GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~-------~~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..||++.+ |+    ++..|.+.|+.|...  .       .+..-.|.+|+.++.|.
T Consensus        38 g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~   94 (131)
T 4a5n_A           38 GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE   94 (131)
T ss_dssp             SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence            799999999999 99    999999999999986  1       11234699999987665

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=90.05  E-value=0.23  Score=38.09  Aligned_cols=51  Identities=12%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAK   61 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~   61 (239)
                      .|+.++ ++++|.++||+++++    ++..+.++|..|...     ..-..|.|.+.....
T Consensus        20 ~La~~~-~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~   75 (162)
T 3k69_A           20 YLDAHR-DSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALA   75 (162)
T ss_dssp             HHHTTT-TSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGG
T ss_pred             HHHhCC-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChh
Confidence            455432 378999999999999    999999999999887     223356798875543

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=90.00  E-value=0.21  Score=33.89  Aligned_cols=49  Identities=12%  Similarity=0.070  Sum_probs=35.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPV   59 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~   59 (239)
                      |.+.|.+    .++|+.|||+++|+    +...+++.|..|...     ....+-.|..+..
T Consensus        22 IL~lL~~----~g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~   75 (82)
T 1oyi_A           22 AIKTIGI----EGATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSDDIPPRWFMTTE   75 (82)
T ss_dssp             HHHHHSS----STEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred             HHHHHHH----cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence            4456665    24999999999999    999999999999774     2223445665544

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=89.90  E-value=0.52  Score=32.86  Aligned_cols=48  Identities=19%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-------CCCCCCeEecChhhHHHH
Q 045543           13 RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-------AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        13 ~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-------~~~~~~~y~~t~~s~~l~   64 (239)
                      +++.+..+||+++++    +...|.|.|..|...       .+...+.-.+|+.++.++
T Consensus        34 g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           34 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence            478999999999999    999999999999886       222334467888887765

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=89.57  E-value=0.24  Score=36.30  Aligned_cols=47  Identities=4%  Similarity=-0.074  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      ++.|..+||+++++    ++..+.+.++.|...  .+...+.|.+|+.++.+.
T Consensus        30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSI   78 (139)
T ss_dssp             SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHH
Confidence            68999999999999    999999999999987  222237899999987765

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=89.57  E-value=0.11  Score=45.23  Aligned_cols=13  Identities=23%  Similarity=0.366  Sum_probs=11.7

Q ss_pred             cceEEEeCCCCCC
Q 045543          109 IKQLVDVGGGCGK  121 (239)
Q Consensus       109 ~~~vlDvGGG~G~  121 (239)
                      ..+|+|+|||+|.
T Consensus       214 ~~~vLDl~cG~G~  226 (369)
T 3bt7_A          214 KGDLLELYCGNGN  226 (369)
T ss_dssp             CSEEEEESCTTSH
T ss_pred             CCEEEEccCCCCH
Confidence            3679999999999

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=89.29  E-value=0.18  Score=36.27  Aligned_cols=52  Identities=10%  Similarity=0.034  Sum_probs=39.7

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCCCeEecChhhH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDRRLQRLAPVAK   61 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~~~y~~t~~s~   61 (239)
                      .|...|.+    +|.|+.|||+.+|+    ++..+.+.|+.|...  .  +  ...-.|++++...
T Consensus        22 ~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~   79 (118)
T 3f6o_A           22 AVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF   79 (118)
T ss_dssp             HHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred             HHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence            35666775    79999999999999    999999999999876  1  1  1233577777653

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=89.05  E-value=0.32  Score=33.19  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCCeEecChhh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRRLQRLAPVA   60 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~~y~~t~~s   60 (239)
                      |+..|.+.   ++.|..|||+.+|+    ++..+.+.|+.|...  .    ......|.+|+..
T Consensus        29 il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~   85 (99)
T 3cuo_A           29 ILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA   85 (99)
T ss_dssp             HHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred             HHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence            45566552   58999999999999    999999999999876  1    1123347777664

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=88.61  E-value=0.19  Score=35.30  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...
T Consensus        30 ~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~   66 (106)
T 1r1u_A           30 RIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSV   66 (106)
T ss_dssp             HHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            35667775    68999999999999    999999999999876

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=88.57  E-value=0.2  Score=36.23  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=38.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CCC--CCeEecChhh
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GDD--RRLQRLAPVA   60 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~~--~~~y~~t~~s   60 (239)
                      .|+..|.+.   ++.|+.|||+.+|+    ++..+.+.|+.|...   . ...  ...|.+++..
T Consensus        46 ~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~  103 (122)
T 1u2w_A           46 KITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH  103 (122)
T ss_dssp             HHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred             HHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence            356677743   68999999999999    999999999999876   1 221  2257777654

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=88.38  E-value=0.67  Score=39.78  Aligned_cols=83  Identities=12%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCc------cccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGE------KERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g------~~rt~~  207 (239)
                      =+++.-.+|..++.+++..+|+.+.+..+ +|.+++.|++.+.+       .+...|--+ +... |-      ...|.+
T Consensus       193 tl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M~~~-l~~~-g~pl~sl~~y~t~~  262 (334)
T 3iei_A          193 TLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIMIEN-LRRR-QCDLAGVETCKSLE  262 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHHHHH-HHTT-TCCCTTGGGGGCHH
T ss_pred             EEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHHHHH-HHHh-CCCCcccccCCCHH
Confidence            47888889999999999999999999875 55677789885432       111111111 1110 11      223667


Q ss_pred             hccHHHHHhhCCCceeeEEEc
Q 045543          208 EYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +.  .++|.++||+.+++...
T Consensus       263 ~~--~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          263 SQ--KERLLSNGWETASAVDM  281 (334)
T ss_dssp             HH--HHHHHTTTCSEEEEEEH
T ss_pred             HH--HHHHHHcCCCcceeecH
Confidence            77  99999999998876653

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=88.28  E-value=0.57  Score=33.74  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        38 iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           38 VIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence            44566654   58999999999999    999999999999986  1    111   22378999998776

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=88.25  E-value=0.45  Score=34.96  Aligned_cols=53  Identities=13%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             chHhHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      ...|..    ++++..||++.+ |+    ++..+.+.|+.|...  .    .   ...-.|.+|+.++.+.
T Consensus        41 L~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           41 LVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             HHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence            344554    699999999999 79    999999999999886  1    1   1223599999988765

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=88.14  E-value=0.26  Score=35.75  Aligned_cols=38  Identities=5%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             cchHhHhcCCCCC-CCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAK-LSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~-~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|.+.+  +| +|+.|||+++++    +...+.|.|+.|...
T Consensus        31 il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~   69 (123)
T 3r0a_A           31 VMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEK   69 (123)
T ss_dssp             HHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            556677654  56 999999999999    999999999999987

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=88.12  E-value=0.3  Score=40.15  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=21.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCCCcc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGKCGW  124 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~~~g  124 (239)
                      ...+++..+ ..+..+|||||||+|....
T Consensus        10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~   37 (252)
T 1qyr_A           10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE   37 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHH
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCCcHHHH
Confidence            456666666 6777899999999998433

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=88.01  E-value=0.36  Score=33.93  Aligned_cols=47  Identities=19%  Similarity=0.137  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..|||+.+ |+    ++..+.+.|+.|...  .    .   +..-.|.+|+.++.+.
T Consensus        37 ~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           37 RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred             CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence            699999999999 59    999999999999986  1    1   1123599999886543

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=87.95  E-value=0.49  Score=35.37  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-------CCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-------GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-------~~~~~~y~~t~~s~~l~   64 (239)
                      ++.+..||++.+|+    ++..+.+.|+.|...  .       .+ .-.|.+|+.++.+.
T Consensus        36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF   90 (146)
T ss_dssp             TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence            69999999999999    999999999999986  1       12 34688998876543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=87.94  E-value=0.33  Score=40.53  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        31 ~~~iv~~~~-~~~~~~VLEIG~G~G~   55 (279)
T 3uzu_A           31 IDAIVAAIR-PERGERMVEIGPGLGA   55 (279)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTST
T ss_pred             HHHHHHhcC-CCCcCEEEEEccccHH
Confidence            455667776 7778899999999999

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=87.92  E-value=0.87  Score=34.05  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .    .+.+   -.+.+|+.++.++
T Consensus        51 iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           51 ALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence            44556664   58999999999999    999999999999986  1    1122   2478999998776

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=87.82  E-value=0.69  Score=33.41  Aligned_cols=55  Identities=16%  Similarity=0.179  Sum_probs=43.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CC---CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AG---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~---~~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.+.++.|...      ..   ...-.|.+|+.++.+.
T Consensus        36 iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           36 ILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            45566654   58999999999999    999999999999986      11   1223488999998776

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=87.77  E-value=0.62  Score=34.03  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        36 iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           36 VLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence            44556654   57999999999999    999999999999986  1    112   23488999998776

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=87.62  E-value=0.96  Score=32.95  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=41.9

Q ss_pred             cchHhHh-cCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543            3 VFEIMAK-AGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~-~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      |+..|.. .   ++.|..+||+.+++    ++..+.++++.|...  .    .+   ..-.+.+|+.++.+.
T Consensus        40 iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           40 VLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence            3455555 3   68999999999999    999999999999986  1    11   123478999998766

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=87.52  E-value=0.63  Score=34.08  Aligned_cols=55  Identities=9%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..|||+.+++    ++..+.++++.|...  .  +     .....+.+|+.++.+.
T Consensus        45 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           45 IISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred             HHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence            44566664   59999999999999    999999999999987  1  1     1134578999998776

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=87.52  E-value=0.55  Score=34.22  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=42.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .    .   ...-.+.+|+.++.+.
T Consensus        42 iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           42 VLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence            34556654   59999999999999    999999999999986  1    1   1233578999998776

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=87.51  E-value=0.55  Score=34.22  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~---~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .  .  +.+   -.+.+|+.++.++
T Consensus        42 vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           42 VLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             HHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred             HHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence            44566664   58999999999999    999999999999987  1  1  112   2368999988766

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=87.45  E-value=0.5  Score=34.14  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=42.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~---~~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.++++.|...  .+    +.+   -.+.+|+.++.+.
T Consensus        43 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           43 ALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence            45566654   58999999999999    999999999999987  11    112   2378999988765

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=87.42  E-value=0.32  Score=32.36  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.+.+ +++.|++||++.+     ++    +...++|.|+.|+..
T Consensus        22 IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~   65 (83)
T 2fu4_A           22 ILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDA   65 (83)
T ss_dssp             HHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHC
Confidence            556666531 1489999999999     89    999999999999986

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=87.26  E-value=0.32  Score=36.79  Aligned_cols=53  Identities=15%  Similarity=0.281  Sum_probs=40.4

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CC--CCCeEecChhhHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GD--DRRLQRLAPVAKY   62 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~--~~~~y~~t~~s~~   62 (239)
                      .|...|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...   . ++  ..-.|++|+....
T Consensus        62 ~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~  120 (151)
T 3f6v_A           62 RLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA  120 (151)
T ss_dssp             HHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHH
Confidence            35666765    79999999999999    999999999999886   1 11  1235888876643

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=87.24  E-value=0.34  Score=33.14  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=39.8

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhh-HHHHHHHhccC--CC-----CCCCeEecChhhHHHH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVM-LDRVLRRSLSS--AG-----DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~-l~rlL~~L~~~--~~-----~~~~~y~~t~~s~~l~   64 (239)
                      .|.+.+  .+.|..|||+.+++    ++.. +.++++.|...  .+     ...-.+.+|+.++.+.
T Consensus        23 ~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           23 EFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence            444532  37999999999999    9999 99999999887  21     1223468898887664

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=87.17  E-value=0.8  Score=33.84  Aligned_cols=55  Identities=9%  Similarity=0.084  Sum_probs=41.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~---~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...  .  .  +.   .-.+.+|+.++.+.
T Consensus        48 iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           48 VLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred             HHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence            34455553   68999999999999    999999999999986  1  1  11   23478999988766

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=87.16  E-value=0.71  Score=33.98  Aligned_cols=56  Identities=9%  Similarity=0.074  Sum_probs=40.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--CCCC---eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--DDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~~~~---~y~~t~~s~~l~   64 (239)
                      |...|...+  +++|..|||+.+++    ++..+.++++.|...  .  .  +.++   .+.+|+.++.+.
T Consensus        44 vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           44 VLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred             HHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence            344565433  57899999999999    999999999999997  1  1  1122   378999988776

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=87.01  E-value=1  Score=33.31  Aligned_cols=55  Identities=13%  Similarity=0.054  Sum_probs=42.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...  .    .+   ..-.+.+|+.++.+.
T Consensus        49 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           49 AFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence            45566664   58999999999999    999999999999986  1    11   122478999998776

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=86.98  E-value=0.13  Score=36.36  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...
T Consensus        30 IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~   65 (108)
T 2kko_A           30 ILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSG   65 (108)
T ss_dssp             HHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            4556654    68999999999999    999999999999876

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=86.97  E-value=0.65  Score=34.59  Aligned_cols=49  Identities=10%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChhhH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPVAK   61 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~s~   61 (239)
                      .|+..+  ++ |+++||+++++    ++..++++|..|...    ...+.|.|.++.-..
T Consensus        17 ~La~~~--~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~   69 (145)
T 1xd7_A           17 LISMDE--KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRAGVPGASLKKDPA   69 (145)
T ss_dssp             HHHTCS--CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGG
T ss_pred             HHHhCC--CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeecCCCCceecCCHH
Confidence            345432  35 99999999999    999999999999886    122277798875543

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=86.84  E-value=0.56  Score=32.08  Aligned_cols=46  Identities=9%  Similarity=0.114  Sum_probs=37.4

Q ss_pred             CCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-CCCC---CeEecChhhHHHH
Q 045543           15 KLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-GDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus        15 ~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-~~~~---~~y~~t~~s~~l~   64 (239)
                      ++|..+||+.+++    ++..+.++++.|...  . .+.+   ..|.+|+.++.+.
T Consensus        30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHH
Confidence            4999999999999    999999999999887  2 1222   2588999987765

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=86.79  E-value=1.1  Score=32.61  Aligned_cols=47  Identities=4%  Similarity=-0.000  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      ++.|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        49 ~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           49 GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF  104 (146)
T ss_dssp             SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence            69999999999999    999999999999986  1    111   22478999988766

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=86.50  E-value=0.89  Score=32.72  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=42.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCC---eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~---~y~~t~~s~~l~   64 (239)
                      |...|...   ++.|..+||+.+++    ++..+.++++.|...  .    .+.++   .+.+|+.++.+.
T Consensus        39 iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           39 VLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence            34556654   58999999999999    999999999999986  1    12222   378999988776

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=86.07  E-value=0.29  Score=35.52  Aligned_cols=37  Identities=11%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|.+    ++.|+.|||+.+|+    ++..+.+.|+.|...
T Consensus        50 ~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~   86 (122)
T 1r1t_A           50 RLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNL   86 (122)
T ss_dssp             HHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            35666765    68999999999999    999999999999886

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=85.98  E-value=0.3  Score=40.01  Aligned_cols=25  Identities=32%  Similarity=0.667  Sum_probs=20.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ...+++..+ ..+..+|||||||+|.
T Consensus        20 ~~~iv~~~~-~~~~~~VLDiG~G~G~   44 (249)
T 3ftd_A           20 LKKIAEELN-IEEGNTVVEVGGGTGN   44 (249)
T ss_dssp             HHHHHHHTT-CCTTCEEEEEESCHHH
T ss_pred             HHHHHHhcC-CCCcCEEEEEcCchHH
Confidence            456677776 6777899999999998

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=85.80  E-value=0.94  Score=33.67  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=42.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC-------CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG-------DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~-------~~~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .+       .....+.+|+.++.+.
T Consensus        54 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           54 VITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence            44566653   68999999999999    999999999999987  11       1124478999988766

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=85.78  E-value=0.99  Score=33.09  Aligned_cols=55  Identities=13%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..+||+.+++    ++..+.++++.|...  .    .   ...-.+.+|+.++.+.
T Consensus        45 iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           45 ILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence            44556654   58999999999999    999999999999986  1    1   1123578999988765

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=85.70  E-value=0.88  Score=33.28  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.++++.|...  .    .+.+   -.+.+|+.++.+.
T Consensus        47 iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           47 ALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence            44556654   58999999999999    999999999999986  1    1122   2378999988766

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=85.67  E-value=1.1  Score=32.51  Aligned_cols=55  Identities=18%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             cchHh-HhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCC---CCCeEecChhhHHHH
Q 045543            3 VFEIM-AKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L-~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~---~~~~y~~t~~s~~l~   64 (239)
                      |...| ...   ++.|..+||+.+++    ++..+.++++.|...      ..+   ..-.+.+|+.++.+.
T Consensus        42 iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           42 VLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             HHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence            34556 432   68999999999999    999999999999986      111   123478999988766

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=85.41  E-value=0.9  Score=32.98  Aligned_cols=55  Identities=9%  Similarity=0.058  Sum_probs=42.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~---~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...      ..+.   .-.+.+|+.++.+.
T Consensus        34 iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           34 YLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence            45566664   58999999999999    999999999999986      1111   22378999998766

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=85.37  E-value=0.66  Score=33.42  Aligned_cols=55  Identities=13%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCCC---eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~~---~y~~t~~s~~l~   64 (239)
                      |...|...   ++.|..|||+.+++    ++..+.++++.|...  .+    +.++   .+.+|+.++.+.
T Consensus        34 iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           34 CLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence            34556654   68999999999999    999999999999987  11    2222   277899887655

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=85.03  E-value=0.9  Score=33.83  Aligned_cols=55  Identities=15%  Similarity=0.163  Sum_probs=42.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----C---CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----G---DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~---~~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...  .    .   ...-.+.+|+.++.+.
T Consensus        57 iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           57 ALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            45566664   58999999999999    999999999999986  1    1   1123478999988766

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=84.71  E-value=1  Score=41.31  Aligned_cols=19  Identities=5%  Similarity=0.246  Sum_probs=16.9

Q ss_pred             HHHHHHHhhCCCCceEEEE
Q 045543          152 SLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~  170 (239)
                      ..++++.+.|+|||++.++
T Consensus       376 ~Fl~~~l~~Lk~gGr~aiV  394 (544)
T 3khk_A          376 AWMLHMLYHLAPTGSMALL  394 (544)
T ss_dssp             HHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCceEEEE
Confidence            5889999999999998885

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=84.59  E-value=1  Score=33.61  Aligned_cols=55  Identities=13%  Similarity=0.157  Sum_probs=42.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .  +     ...-.+.+|+.++.+.
T Consensus        58 vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  121 (161)
T 3e6m_A           58 LLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL  121 (161)
T ss_dssp             HHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence            34456654   58999999999999    999999999999987  1  1     1223578999998776

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=83.96  E-value=1.1  Score=33.27  Aligned_cols=47  Identities=11%  Similarity=0.082  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~   64 (239)
                      ++.|..+||+.+++    ++..+.+.++.|...   ....+..+.+|+.++.+.
T Consensus        53 ~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~  102 (155)
T 2h09_A           53 GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA  102 (155)
T ss_dssp             SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHH
Confidence            58999999999999    999999999999887   222346788999987765

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=83.89  E-value=1.1  Score=32.91  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        52 iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  115 (153)
T 2pex_A           52 VMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR  115 (153)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred             HHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence            44556654   58999999999999    999999999999987  1    111   22478899888765

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=83.83  E-value=0.99  Score=34.03  Aligned_cols=55  Identities=13%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        50 iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           50 TLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            44556654   58999999999999    999999999999986  1    111   22378999988766

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=83.68  E-value=1.1  Score=32.34  Aligned_cols=57  Identities=11%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...+ ++++|..|||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        36 vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~  101 (139)
T 3eco_A           36 TLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV  101 (139)
T ss_dssp             HHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred             HHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence            344555542 248999999999999    999999999999986  1    112   23468999998776

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=83.67  E-value=1.2  Score=32.40  Aligned_cols=54  Identities=7%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C-----CCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G-----DDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~-----~~~~~y~~t~~s~~l~   64 (239)
                      |...|..    +++|..|||+.+++    ++..+.++++.|...  .  .     ...-.+.+|+.++.+.
T Consensus        43 iL~~l~~----~~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           43 ILMLLSE----ESLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHTT----CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred             HHHHHHh----CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence            3445555    34999999999999    999999999999986  1  1     1123478888887765

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=83.64  E-value=1.2  Score=32.18  Aligned_cols=57  Identities=9%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...+ ++++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        39 iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~  104 (141)
T 3bro_A           39 IIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence            344566542 128999999999999    999999999999986  1    111   22467888886554

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=83.62  E-value=0.8  Score=33.25  Aligned_cols=55  Identities=9%  Similarity=0.122  Sum_probs=42.6

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCCC---eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~~---~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.++++.|...  .+    +.++   .+.+|+.++.+.
T Consensus        38 iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           38 ILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence            44556654   58999999999999    999999999999987  11    1222   478999998766

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=83.60  E-value=1.1  Score=33.82  Aligned_cols=56  Identities=11%  Similarity=0.077  Sum_probs=42.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C--C--C---CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A--G--D---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~--~--~---~~~~y~~t~~s~~l~   64 (239)
                      |...|...+  +++|..|||+.+++    ++..+.++++.|...  .  +  +   ..-.+.+|+.++.++
T Consensus        58 vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  122 (166)
T 3deu_A           58 TLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence            344565532  57999999999999    999999999999987  1  1  1   123578999998776

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=83.59  E-value=1  Score=33.51  Aligned_cols=55  Identities=5%  Similarity=0.051  Sum_probs=42.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..|||+.+++    ++..+.++++.|...  .    .+.+   -.+.+|+.++.+.
T Consensus        55 vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           55 FLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred             HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence            34456654   68999999999999    999999999999986  1    1122   2478999998776

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=83.51  E-value=3.3  Score=34.97  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      ..+.+.+- +....+|||+||++|.
T Consensus        84 ~ei~~~~~-l~~~~~VlDLGaapGG  107 (321)
T 3lkz_A           84 RWLVERRF-LEPVGKVIDLGCGRGG  107 (321)
T ss_dssp             HHHHHTTS-CCCCEEEEEETCTTCH
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCc
Confidence            45555655 7777899999999999

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=83.50  E-value=0.74  Score=33.24  Aligned_cols=55  Identities=13%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCCC---eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~~---~y~~t~~s~~l~   64 (239)
                      |+..|...   +++|..+||+.+++    ++..+.++++.|...  .    .+.++   .+.+|+.++.+.
T Consensus        41 iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           41 VIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence            44556654   58999999999999    999999999999986  1    11222   378899988765

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=83.40  E-value=2.8  Score=31.60  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=43.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCC-CCCCCChhhHHHHHHHhccC--C-----C---CCCC----eEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMP-SHNPNAAVMLDRVLRRSLSS--A-----G---DDRR----LQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g-~~~~~~~~~l~rlL~~L~~~--~-----~---~~~~----~y~~t~~s~~l~   64 (239)
                      |+..|..++ .+..|++||++.++ +    +...+++-|+.|+..  .     .   ...|    .|++|+.++.++
T Consensus        34 IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l  105 (151)
T 3u1d_A           34 VLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL  105 (151)
T ss_dssp             HHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred             HHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence            455555532 25689999999999 9    999999999999986  1     0   1123    799999999876

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=83.28  E-value=1  Score=39.00  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhCCCCceEEEEeeecC
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      .+||+++.+.|+|||+|+-...-+.
T Consensus       264 ~~iL~~a~~~lkpGG~LVYsTCSl~  288 (359)
T 4fzv_A          264 VQLLAAGLLATKPGGHVVYSTCSLS  288 (359)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCc
Confidence            5799999999999999887765443

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=83.15  E-value=0.59  Score=34.08  Aligned_cols=47  Identities=13%  Similarity=0.109  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      ++.|..|||+.+++    ++..+.++++.|...  .    .+   ..-.+.+|+.++.+.
T Consensus        49 ~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           49 EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            68999999999999    999999999999987  1    11   223578999998765

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=82.87  E-value=1.4  Score=31.94  Aligned_cols=55  Identities=9%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      |...|...   ++.|..+||+.+++    ++..+.+.++.|...  .    .+   ..-.+.+|+.++.+.
T Consensus        42 iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           42 VLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence            44556654   58999999999999    999999999999986  1    11   122478899998776

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=82.68  E-value=1.1  Score=32.26  Aligned_cols=47  Identities=4%  Similarity=-0.001  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      ++.|..|||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        52 ~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~  107 (127)
T 2frh_A           52 KEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  107 (127)
T ss_dssp             SEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            58999999999999    999999999999986  1    122   23467898887765

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=82.63  E-value=0.78  Score=32.27  Aligned_cols=37  Identities=11%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      ||+..|.+    |..|-.|||+.+|+    +...+.|+=|+|-.+
T Consensus        49 ~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~l   85 (101)
T 1jhg_A           49 RIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKAA   85 (101)
T ss_dssp             HHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHHS
T ss_pred             HHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHHc
Confidence            56666776    68999999999999    999999998887654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=82.48  E-value=2.7  Score=31.70  Aligned_cols=16  Identities=25%  Similarity=0.177  Sum_probs=13.0

Q ss_pred             CCCcceEEEeCCCCCC
Q 045543          106 FEKIKQLVDVGGGCGK  121 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~  121 (239)
                      +....++|+||||.|.
T Consensus        33 ~~~~~rVlEVG~G~g~   48 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFL   48 (153)
T ss_dssp             SCSSSEEEEETCTTCC
T ss_pred             CCCCCcEEEEccCCCh
Confidence            3445799999999995

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=82.24  E-value=1.8  Score=32.13  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |++.|.+.+  ++.|++||.+.+     ++    +...++|.|+.|+..
T Consensus        27 Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~   69 (145)
T 2fe3_A           27 ILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRES   69 (145)
T ss_dssp             HHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHC
Confidence            567777643  799999999999     67    899999999999987

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=81.99  E-value=0.94  Score=30.99  Aligned_cols=37  Identities=14%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...|...   ++.|..|||+.+++    ++..+.+.|+.|...
T Consensus        25 il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~   61 (109)
T 1sfx_A           25 IYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKR   61 (109)
T ss_dssp             HHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            45566654   58999999999999    999999999999887

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=81.94  E-value=2.3  Score=40.18  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=19.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK  121 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~  121 (239)
                      +..++.... |.+..+|+|.+||+|.
T Consensus       179 Aa~ll~~~~-~~~~~~llDP~CGSGt  203 (703)
T 3v97_A          179 AAAIVMRSG-WQPGTPLLDPMCGSGT  203 (703)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSH
T ss_pred             HHHHHHhhC-CCCCCeEEecCCCCcH
Confidence            445555555 8888899999999998

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=81.93  E-value=1.1  Score=33.00  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CC---CCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~---~~~~y~~t~~s~~l~   64 (239)
                      |+..|...   ++.|..+||+.+++    ++..+.++++.|...  .    .+   ..-.+.+|+.++.+.
T Consensus        42 iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           42 VLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence            44556654   58999999999999    999999999999986  1    11   122478999988766

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=81.82  E-value=1.3  Score=32.41  Aligned_cols=56  Identities=4%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CC----CCC---CeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AG----DDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~----~~~---~~y~~t~~s~~l~   64 (239)
                      ...|...+ ++++|..+||+.+++    ++..+.++++.|...  .+    +.+   -.+.+|+.++.+.
T Consensus        47 L~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           47 IGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred             HHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence            34455431 258999999999999    999999999999986  11    112   2467899988776

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=81.77  E-value=0.95  Score=33.29  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      |...|...   +++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.+.
T Consensus        46 iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           46 VMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred             HHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence            34456554   68999999999999    999999999999886  1    111   23588999998776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.67  E-value=4.2  Score=38.07  Aligned_cols=84  Identities=17%  Similarity=0.153  Sum_probs=57.7

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC------ccccChh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG------EKERTKQ  207 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~------g~~rt~~  207 (239)
                      =+++.-.+|..++.+++.++|+.+.+ + |++.+++.|.+.+..+..+    +...+ +..+... +      -...+.+
T Consensus       219 tl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~----f~~~m-~~~~~~~-g~~l~~~~~~~~~~  290 (695)
T 2zwa_A          219 KVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP----FSKQM-LAHFKRN-DSPLQSVLKYNTIE  290 (695)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH----HHHHH-HHHHHHT-TCCCCGGGTCCSHH
T ss_pred             EEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh----HHHHH-HHHHHHc-CCCCCccccCCCHH
Confidence            47788899999999999999999985 5 6888889999877543321    22222 1111110 1      1233678


Q ss_pred             hccHHHHHhhCCCceeeEEE
Q 045543          208 EYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~  227 (239)
                      +.  .++|.+.||+.+....
T Consensus       291 ~~--~~~~~~~Gw~~v~~~~  308 (695)
T 2zwa_A          291 SQ--VQRFNKLGFAYVNVGD  308 (695)
T ss_dssp             HH--HHHHHHTTCCEEEEEE
T ss_pred             HH--HHHHHHCCCCCcceee
Confidence            88  9999999998776554

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=81.51  E-value=1.4  Score=32.14  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC-----CCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM-----PSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |++.|.+.+  ++.|++||.+.+     ++    +...++|.|+.|+..
T Consensus        16 Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~   58 (131)
T 2o03_A           16 ISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASS   58 (131)
T ss_dssp             HHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHC
Confidence            667787643  799999999999     78    999999999999997

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=81.34  E-value=0.86  Score=32.34  Aligned_cols=37  Identities=8%  Similarity=0.120  Sum_probs=32.4

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|.+    ++.|..|||+.+++    ++..+.+.|+.|...
T Consensus        36 ~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~   72 (119)
T 2lkp_A           36 MILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNL   72 (119)
T ss_dssp             HHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            35677776    58999999999999    999999999999876

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=80.99  E-value=2.7  Score=31.18  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCCC---eEecChhhHHHH
Q 045543            5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDRR---LQRLAPVAKYVL   64 (239)
Q Consensus         5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~~---~y~~t~~s~~l~   64 (239)
                      -.|...+  ++.+..|||+.+++    ++..+.++++.|...      ..+.++   ...+|+.++.+.
T Consensus        38 ~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~  100 (151)
T 4aik_A           38 YNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII  100 (151)
T ss_dssp             HHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred             HHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence            3455443  46788999999999    999999999999987      112222   468999998776

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=80.82  E-value=1  Score=31.31  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             chHhHhcCCCCCCCHHHHHH-hCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHHhcCCCcc
Q 045543            4 FEIMAKAGPRAKLSAAEIEA-QMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVLHYGIGDY   71 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~-~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~~~g~~~~   71 (239)
                      .-.|++.   ++.|+.+||+ .+++    +...+.|=++.|...  .+..++-..+|+.++.++..+.+.|
T Consensus        22 L~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~~~Dl~LT~~G~~~l~~a~~~W   85 (95)
T 1bja_A           22 LITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKSGDGLIITGEAQDIISNAATLY   85 (95)
T ss_dssp             HHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecCCCCeeeCHhHHHHHHHHHHHH
Confidence            3456665   5999999999 9999    999999999999987  3332333999999998876666666

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=80.59  E-value=1.7  Score=34.52  Aligned_cols=145  Identities=11%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHHhc---CCCcc-----cccccCchHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVLHY---GIGDY-----EHAGLDSRFNE   82 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~~~---g~~~~-----~~l~~~~~~~~   82 (239)
                      ++.|..+||+.+++    ++..+.+.++-|...   .....+.+.+|+.++.+...   ....|     +.+.-+++...
T Consensus        19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~   94 (214)
T 3hrs_A           19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIH   94 (214)
T ss_dssp             SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            79999999999999    999999999999997   22234678999999876511   01111     12223445555


Q ss_pred             HHHHHHHhccc-ccHHHHHhhccCCCC---c-ceEEEeCCCCCCCcc-ccc--cccCCcceeeechhhhcCChhHHHHHH
Q 045543           83 VLNTAMLSHNS-IVMNRILDYYKGFEK---I-KQLVDVGGGCGKCGW-KMF--QKILNGDAILMKLILRNWDDEHCLSLL  154 (239)
Q Consensus        83 ~f~~~m~~~~~-~~~~~~~~~~~~~~~---~-~~vlDvGGG~G~~~g-D~~--~~~p~~D~~~l~~vlH~~~d~~~~~iL  154 (239)
                      .....|...-. .....+.+.+. +..   . ..|=   ...|.... +..  ..++.|+-+.+..|-    ++.  .++
T Consensus        95 ~~a~~lEh~~s~~~~~~l~~~l~-~p~~~Phg~~Ip---~~~~~~~~~~~~~L~~l~~G~~~~I~~i~----~~~--~~~  164 (214)
T 3hrs_A           95 EEAEVLEHTVSDHFVERLDQLLD-YPKACPHGGTIP---AKGELLVEKHKLTLEEAKEKGDYILARVH----DNF--DLL  164 (214)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHTT-CCSBCTTSCBCC---CTTSCCCCSCCCBSTTCCSCEEEEEEEEC----CCH--HHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHhC-CCCCCcCcCCcC---CCCCCcccccccChhhcCCCCeEEEEEEe----CcH--HHH
Confidence            55555544322 23344444433 221   1 1111   11121111 111  134446666666663    222  566


Q ss_pred             HHHHh-hCCCCceEEEEee
Q 045543          155 KNCYE-AIPGNGKIIIIDS  172 (239)
Q Consensus       155 ~~~~~-aL~pgg~lli~d~  172 (239)
                      +++.+ -+.||..+-|...
T Consensus       165 ~~L~~~Gi~pG~~v~v~~~  183 (214)
T 3hrs_A          165 TYLERNGLQVGKTIRFLGY  183 (214)
T ss_dssp             HHHHTTTCCTTCEEEEEEE
T ss_pred             HHHHHCCCCCCCEEEEEEe
Confidence            66665 4789988888754

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=80.47  E-value=1  Score=31.52  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...+...|  .++|..|||+.+|+    +...+.+.|+.|...
T Consensus        23 Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~   60 (110)
T 1q1h_A           23 VLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQ   60 (110)
T ss_dssp             HHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            455554322  48999999999999    999999999999886

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=80.08  E-value=1.8  Score=33.42  Aligned_cols=56  Identities=9%  Similarity=0.113  Sum_probs=41.9

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      ...|...+ ++++|..+||+.+++    ++..+.++++.|...  .    .+.   .-.+.+|+.++.++
T Consensus        47 L~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  111 (189)
T 3nqo_A           47 ILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM  111 (189)
T ss_dssp             HHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             HHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            34455321 268999999999999    999999999999986  1    111   23478999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-33
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-27
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	7e-27
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-16
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	1e-12
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	1e-10
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	8e-10
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	1e-04

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  119 bits (299), Expect = 1e-33
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 38/209 (18%)

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC--- 122
           +G+  YE  G D + N++ N +M+   +  M R+L+ Y GFE I  LVDVGGG G+    
Sbjct: 39  HGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLEL 98

Query: 123 -------------------------------GWKMFQKILNGDAILMKLILRNWDDEHCL 151
                                          G  MF  +  GDA+++K +  NW DE C+
Sbjct: 99  IISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI 158

Query: 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211
             L NC++A+  NGK+II++      P  +  ++  S++D +M + + G +ERT+++Y  
Sbjct: 159 EFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG-RERTEKQYEK 217

Query: 212 MALTAKNGFKGVNYESFVCNFY-IMEFIK 239
           ++  +  GF          N   +MEF K
Sbjct: 218 LSKLS--GFSKFQVACRAFNSLGVMEFYK 244

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  102 bits (256), Expect = 3e-27
 Identities = 59/248 (23%), Positives = 94/248 (37%), Gaps = 44/248 (17%)

Query: 27  SHNPNAAVMLDRVLRRSLSSAGDDRRLQRLAPVAKYVLHYGIGDYEHAGLDSRFNEVLNT 86
              P    +LD  L  S          + L     + +  G G ++    +  +N   N 
Sbjct: 2   CLAPMVECVLDPTLSGSYHELKKWIYEEDLTL---FGVTLGSGFWDFLDKNPEYNTSFND 58

Query: 87  AMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK------------------------- 121
           AM S + ++   + D    F+ ++ +VDVGGG G                          
Sbjct: 59  AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 118

Query: 122 ---------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGN---GKIII 169
                     G  MF  I N DA+L+K IL NW D+ CL +LK C EA+  +   GK+ I
Sbjct: 119 LSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 178

Query: 170 IDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV 229
           ID       +    T+    +D+ M       KER ++E+  + + A  GF+        
Sbjct: 179 IDMVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEA--GFQHYKISPLT 234

Query: 230 CNFYIMEF 237
               ++E 
Sbjct: 235 GFLSLIEI 242

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  101 bits (253), Expect = 7e-27
 Identities = 82/207 (39%), Positives = 108/207 (52%), Gaps = 36/207 (17%)

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKC--- 122
           YG+  +E+ G D RFN+V N  M  H++I M +IL+ Y GFE +K LVDVGGG G     
Sbjct: 39  YGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINT 98

Query: 123 -------------------------------GWKMFQKILNGDAILMKLILRNWDDEHCL 151
                                          G  MF  I   DA+ MK I  +W DEHCL
Sbjct: 99  IVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCL 158

Query: 152 SLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG 211
             LKNCYEA+P NGK+I+ +    V P+++ AT+    ID+IML    G KERT++E+  
Sbjct: 159 KFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFED 218

Query: 212 MALTAKNGFKGVNYESFVCNFYIMEFI 238
           +A  A  GF+G        N YIMEF+
Sbjct: 219 LAKGA--GFQGFKVHCNAFNTYIMEFL 243

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 74.2 bits (181), Expect = 2e-16
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 53/219 (24%)

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWK 125
           YG   +E    D    +  +  M     +      D Y  +  ++ ++DVGGG G     
Sbjct: 40  YGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAA 98

Query: 126 MFQKILNG------------------------------------------DAILMKLILR 143
           +  +  +                                           D +L+  +L 
Sbjct: 99  IALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158

Query: 144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE 203
           NW DE  L++L+ C  A+   G+++++D     +         ++ +D+ ML  + G + 
Sbjct: 159 NWSDEDALTILRGCVRALEPGGRLLVLD--RADVEGDGADRFFSTLLDLRMLTFMGG-RV 215

Query: 204 RTKQEYYGMALTAKNGFKGV-----NYESFVCNFYIMEF 237
           RT+ E   +A +A  G            +   +F I+EF
Sbjct: 216 RTRDEVVDLAGSA--GLALASERTSGSTTLPFDFSILEF 252

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 11/75 (14%)

Query: 1   MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLR-----------RSLSSAGD 49
           + + EI+AKAGP A++S  EI +Q+P+ NP+A VMLDR+LR                 G 
Sbjct: 30  LDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGK 89

Query: 50  DRRLQRLAPVAKYVL 64
            +RL  LA VAKY++
Sbjct: 90  VQRLYGLATVAKYLV 104

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 49/205 (23%)

Query: 66  YGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGKCGWK 125
           YG   YE            ++ +     +  +     Y  +  ++ ++DVGGG G     
Sbjct: 39  YGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAA 97

Query: 126 MFQKILNGDAILMKL------------------------------------------ILR 143
           + ++  +  A ++++                                          +L 
Sbjct: 98  IARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 157

Query: 144 NWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE 203
           NW D   + +L  C EA+   G+I+I +              + + +D+ ML+ L G   
Sbjct: 158 NWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHENSFNEQFTELDLRMLVFLGG-AL 213

Query: 204 RTKQEYYGMALTAKNGFKGVNYESF 228
           RT++++ G+A +A  G         
Sbjct: 214 RTREKWDGLAASA--GLVVEEVRQL 236

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 52.5 bits (126), Expect = 8e-10
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 1   MGVFEIMAKAG-PRAKLSAAEIEAQMPSH--NPNAAVMLDRVLR-----------RSLSS 46
           + +FEI+AKA  P A +S +EI +++P+   + +    LDR+LR                
Sbjct: 29  LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 88

Query: 47  AGDDRRLQRLAPVAKYVL 64
            G   R+  L+ V KY++
Sbjct: 89  DGGAERVYGLSMVGKYLV 106

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 1  MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSSAG------DDRRLQ 54
          M +  I+   G    +S + + + +   +      + R++ R L+  G       +    
Sbjct: 32 MNIPNIIQNHGKP--ISLSNLVSILQVPSSK-IGNVRRLM-RYLAHNGFFEIITKEEESY 87

Query: 55 RLAPVAKYVLH 65
           L   ++ ++ 
Sbjct: 88 ALTVASELLVR 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.58
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.53
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.52
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.52
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.46
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.45
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.35
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.3
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.22
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.21
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.16
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.16
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.13
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.13
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.12
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.12
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.1
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.04
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.03
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.03
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.0
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.97
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.92
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.87
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.84
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.8
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.75
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.65
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.59
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.58
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.52
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.48
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.42
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.4
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.38
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.37
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.34
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.3
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.19
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.14
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.08
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.05
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.92
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.92
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.84
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.76
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.71
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.7
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.65
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.52
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.46
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.41
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.4
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.12
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.96
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.23
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.9
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.69
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	94.61
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.38
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	94.18
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.0
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.9
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	93.55
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	92.94
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	92.87
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.81
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	92.34
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.26
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.19
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	91.84
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	91.73
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	91.71
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	91.6
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	91.5
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	91.48
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	91.48
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	91.41
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	91.19
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	91.07
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	90.28
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	89.5
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	89.46
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	89.08
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.01
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.81
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	88.79
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	88.53
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.42
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.12
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	88.04
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	87.89
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	87.74
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	87.49
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	87.46
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	87.44
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	87.34
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	87.22
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	87.17
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	87.17
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.17
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	85.94
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	85.82
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	85.74
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	85.42
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	84.91
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	84.51
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	84.47
d1gdta1	43	gamma,delta resolvase (C-terminal domain) {Escheri	84.42
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	84.1
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	83.9
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	82.08
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	82.05
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	81.92
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.85
d1d5ya1	54	Rob transcription factor, N-terminal domain {Esche	81.56
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	81.54
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	81.48
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	81.3
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	81.25
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	81.15
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	80.73
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	80.42
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	80.11

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.1e-42  Score=288.52  Aligned_cols=172  Identities=35%  Similarity=0.694  Sum_probs=151.9

Q ss_pred             hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------
Q 045543           65 HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------  121 (239)
Q Consensus        65 ~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------  121 (239)
                      +||.++|+|+.++|+..+.|+++|...+...++.+++.|+.|++.++|||||||+|.                       
T Consensus        38 ~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi  117 (244)
T d1fp1d2          38 VHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI  117 (244)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred             hcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhh
Confidence            578999999999999999999999999998899999999878999999999999998                       


Q ss_pred             -----------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhh
Q 045543          122 -----------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI  190 (239)
Q Consensus       122 -----------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~  190 (239)
                                 ++||||+++|.+|+|++++|||+|+|++|++||++++++|+|||+|+|+|.++++.+..+........+
T Consensus       118 ~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~  197 (244)
T d1fp1d2         118 ENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTL  197 (244)
T ss_dssp             TTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHH
T ss_pred             hccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHH
Confidence                       889999999988999999999999999999999999999999999999999998877655444456788


Q ss_pred             hHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc-CCceeEEEEEC
Q 045543          191 DIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF-VCNFYIMEFIK  239 (239)
Q Consensus       191 dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~-~~~~~vie~~k  239 (239)
                      |++||+++ +|++||.+||  ++||++|||+.+++++. .+..+|||++|
T Consensus       198 d~~m~~~~-~g~ert~~e~--~~ll~~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         198 DNLMFITV-GGRERTEKQY--EKLSKLSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             HHHHHHHH-SCCCEEHHHH--HHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHhhC-CCcCCCHHHH--HHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence            99999887 9999999999  99999999999999765 47899999998

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=9.6e-41  Score=278.46  Aligned_cols=170  Identities=32%  Similarity=0.566  Sum_probs=152.9

Q ss_pred             hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhh-ccCCCCcceEEEeCCCCCC----------------------
Q 045543           65 HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDY-YKGFEKIKQLVDVGGGCGK----------------------  121 (239)
Q Consensus        65 ~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~-~~~~~~~~~vlDvGGG~G~----------------------  121 (239)
                      +||+++|+|+.++|+..+.|+++|...+......+.+. ++ |++.++|||||||+|.                      
T Consensus        37 a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v  115 (244)
T d1fp2a2          37 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV  115 (244)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             hhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH
Confidence            57999999999999999999999999888766676654 45 8899999999999999                      


Q ss_pred             ------------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCC---ceEEEEeeecCCCCCCChhhhh
Q 045543          122 ------------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGN---GKIIIIDSTTVVIPEATPATRE  186 (239)
Q Consensus       122 ------------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pg---g~lli~d~~~~~~~~~~~~~~~  186 (239)
                                  ++||||+++|.+|+|++++|||+|+|++|++||++|++||+||   |+++|+|.++++.+.++.....
T Consensus       116 i~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~  195 (244)
T d1fp2a2         116 VENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI  195 (244)
T ss_dssp             HTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHH
T ss_pred             HHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHH
Confidence                        8999999988789999999999999999999999999999998   8999999999887665433334


Q ss_pred             hhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          187 ASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       187 ~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      ...+|++|++ + +|++||.+||  ++||++|||+.++++++++..+|||++|
T Consensus       196 ~~~~dl~m~~-~-~G~ert~~e~--~~ll~~AGf~~~~i~~~~~~~svIE~~p  244 (244)
T d1fp2a2         196 KLLMDVNMAC-L-NGKERNEEEW--KKLFIEAGFQHYKISPLTGFLSLIEIYP  244 (244)
T ss_dssp             HHHHHHHGGG-G-TCCCEEHHHH--HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHh-C-CCcCCCHHHH--HHHHHHcCCceEEEEECCCCeEEEEEeC
Confidence            5678998876 4 8999999999  9999999999999999999999999997

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.9e-39  Score=270.56  Aligned_cols=172  Identities=47%  Similarity=0.849  Sum_probs=156.9

Q ss_pred             hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------
Q 045543           65 HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------  121 (239)
Q Consensus        65 ~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------  121 (239)
                      ++|.++|+|+.++|+..+.|+++|...+...++.+++.++.+++.++|||||||+|.                       
T Consensus        38 ~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi  117 (243)
T d1kyza2          38 AYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVI  117 (243)
T ss_dssp             HHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTT
T ss_pred             hcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhh
Confidence            578999999999999999999999999888889999999844668999999999998                       


Q ss_pred             -----------CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhh
Q 045543          122 -----------CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSI  190 (239)
Q Consensus       122 -----------~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~  190 (239)
                                 +++|||+++|.+|+|++++|||+|+|++|++||+++++||+|||+++|+|.++++....+........+
T Consensus       118 ~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~  197 (243)
T d1kyza2         118 EDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHI  197 (243)
T ss_dssp             TTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHH
T ss_pred             hhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHH
Confidence                       889999999989999999999999999999999999999999999999999998876654333445678


Q ss_pred             hHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543          191 DIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI  238 (239)
Q Consensus       191 dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~  238 (239)
                      |++||+++.+|++||.+||  ++||++|||+.+++++.++..+|||++
T Consensus       198 d~~ml~~~~~g~ert~~e~--~~ll~~AGf~~vkv~~~~~~~~viE~~  243 (243)
T d1kyza2         198 DVIMLAHNPGGKERTQKEF--EDLAKGAGFQGFKVHCNAFNTYIMEFL  243 (243)
T ss_dssp             HHHHHHHCSSCCCEEHHHH--HHHHHHHCCSCEEEEEEETTEEEEEEC
T ss_pred             HHHHHhhCCCCCcCCHHHH--HHHHHHcCCCcEEEEEeCCCCEEEEeC
Confidence            9999987778999999999  999999999999999998899999974

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=3.5e-36  Score=252.54  Aligned_cols=169  Identities=25%  Similarity=0.482  Sum_probs=149.0

Q ss_pred             hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------
Q 045543           65 HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------  121 (239)
Q Consensus        65 ~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------  121 (239)
                      ++|.++|+|+.++|+..+.|+++|...+...++.+++.+| |++.++|||||||+|.                       
T Consensus        39 ~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~  117 (256)
T d1qzza2          39 RYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPA  117 (256)
T ss_dssp             HHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred             hhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHH
Confidence            5789999999999999999999999999988999999999 9999999999999999                       


Q ss_pred             ------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCCh
Q 045543          122 ------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATP  182 (239)
Q Consensus       122 ------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~  182 (239)
                                        +++|+|+++|.+ |+|++++|||+|+|+++.++|++|+++|+|||+|+|+|.+.+++.... 
T Consensus       118 ~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~-  196 (256)
T d1qzza2         118 ERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD-  196 (256)
T ss_dssp             HHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------
T ss_pred             HHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc-
Confidence                              688999988875 999999999999999999999999999999999999998766543322 


Q ss_pred             hhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-----CceeEEEEEC
Q 045543          183 ATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-----CNFYIMEFIK  239 (239)
Q Consensus       183 ~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-----~~~~vie~~k  239 (239)
                       ......+|+.|++.+ +|++||.+||  ++||++|||+++++++.+     ..++|||+++
T Consensus       197 -~~~~~~~d~~ml~~~-~g~~rt~~e~--~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         197 -RFFSTLLDLRMLTFM-GGRVRTRDEV--VDLAGSAGLALASERTSGSTTLPFDFSILEFTA  254 (256)
T ss_dssp             -HHHHHHHHHHHHHHH-SCCCCCHHHH--HHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             -HHHHHHHHHHHHhhC-CCccCCHHHH--HHHHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence             234677899999987 9999999999  999999999999998764     3579999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=5.9e-34  Score=238.27  Aligned_cols=168  Identities=21%  Similarity=0.435  Sum_probs=148.7

Q ss_pred             hcCCCcccccccCchHHHHHHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------
Q 045543           65 HYGIGDYEHAGLDSRFNEVLNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------  121 (239)
Q Consensus        65 ~~g~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------  121 (239)
                      ++|+++|+|+.++|+..+.|+.+|...+...++.+++.|| |++.++|||||||+|.                       
T Consensus        38 ~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~  116 (253)
T d1tw3a2          38 IYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTV  116 (253)
T ss_dssp             HHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHH
T ss_pred             ccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHH
Confidence            5789999999999999999999999999888999999999 9999999999999998                       


Q ss_pred             ------------------CccccccccCCc-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCCh
Q 045543          122 ------------------CGWKMFQKILNG-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATP  182 (239)
Q Consensus       122 ------------------~~gD~~~~~p~~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~  182 (239)
                                        +.+|+|+++|.. |+|+++++||+|+|+++.++|++++++|+|||+|+|+|...++....+ 
T Consensus       117 ~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~-  195 (253)
T d1tw3a2         117 DTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN-  195 (253)
T ss_dssp             HHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS-
T ss_pred             HHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcch-
Confidence                              778999877765 999999999999999999999999999999999999998766554432 


Q ss_pred             hhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEcC-----CceeEEEEEC
Q 045543          183 ATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESFV-----CNFYIMEFIK  239 (239)
Q Consensus       183 ~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~-----~~~~vie~~k  239 (239)
                        .....+|+.|++.+ +|++||.+||  ++++++|||++++++.++     ...++|+..|
T Consensus       196 --~~~~~~dl~~~~~~-~g~~rt~~e~--~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         196 --EQFTELDLRMLVFL-GGALRTREKW--DGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             --HHHHHHHHHHHHHH-SCCCCBHHHH--HHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             --hHHHHhhHHHHhhC-CCcCCCHHHH--HHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence              23467899999987 9999999999  999999999999987763     2467777653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=4e-15  Score=120.49  Aligned_cols=131  Identities=16%  Similarity=0.142  Sum_probs=90.5

Q ss_pred             CCCcceEEEeCCCCCC--------------------------------------------Ccccccc-ccCCcceeeech
Q 045543          106 FEKIKQLVDVGGGCGK--------------------------------------------CGWKMFQ-KILNGDAILMKL  140 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~--------------------------------------------~~gD~~~-~~p~~D~~~l~~  140 (239)
                      ..+..+|||||||+|.                                            ..+|+.+ +.+..|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            3566799999999997                                            3345443 223359999999


Q ss_pred             hhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC-------------ccccChh
Q 045543          141 ILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG-------------EKERTKQ  207 (239)
Q Consensus       141 vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~-------------g~~rt~~  207 (239)
                      ++|++++++..++|+++++.|+|||++++.|...++.+.... ........+........             -...|.+
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  195 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH-LLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE  195 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHH-HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred             eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhh-HHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence            999999888899999999999999999999988766532110 00001111111000000             1235788


Q ss_pred             hccHHHHHhhCCCceeeEEEcCCceeEEEEEC
Q 045543          208 EYYGMALTAKNGFKGVNYESFVCNFYIMEFIK  239 (239)
Q Consensus       208 e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~k  239 (239)
                      ++  .++|+++||+.++++--...+..+.|+|
T Consensus       196 ~~--~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         196 TH--KVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HH--HHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HH--HHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            99  9999999999998875555677788877

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.53  E-value=1.6e-14  Score=116.78  Aligned_cols=121  Identities=11%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc--
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG--  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~--  133 (239)
                      ...+++..+ +.+..+|||||||+|.                                       +.+|+.+ ++|.+  
T Consensus         4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence            356777777 8899999999999998                                       3455554 55543  


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHH-hhccCCccccChhhccHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIM-LMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~m-l~~~~~g~~rt~~e~~~~  212 (239)
                      |+|++.+++|+++|.+  ++|+++++.|+|||+++|.++..++...      .....+... .......+.++.++|  .
T Consensus        83 D~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~  152 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDW--L  152 (231)
T ss_dssp             EEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHH--H
T ss_pred             ccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHHH--H
Confidence            9999999999998865  8899999999999999999987665321      111122111 111113355688999  9


Q ss_pred             HHHhhCCCceeeEEE
Q 045543          213 ALTAKNGFKGVNYES  227 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~  227 (239)
                      ++|+++||+++++..
T Consensus       153 ~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_         153 KMLEEAGFELEELHC  167 (231)
T ss_dssp             HHHHHHTCEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE
Confidence            999999999887653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.52  E-value=9.6e-15  Score=122.18  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             HHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Cc
Q 045543           85 NTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CG  123 (239)
Q Consensus        85 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~  123 (239)
                      ..++.......+..+....+ +++..+|||||||+|.                                         +.
T Consensus        45 ~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~  123 (282)
T d2o57a1          45 REASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY  123 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccc
Confidence            33333333334456666666 8899999999999998                                         44


Q ss_pred             ccccc-ccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          124 WKMFQ-KILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       124 gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                      +|+.+ ++|.+  |+|++..++|+++|.+  ++|++++++|+|||++++.+....+.....   ....+.+...     .
T Consensus       124 ~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~-----~  193 (282)
T d2o57a1         124 GSFLEIPCEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRIK-----L  193 (282)
T ss_dssp             CCTTSCSSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHHT-----C
T ss_pred             cccccccccccccchhhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHHHhc-----c
Confidence            67665 56643  9999999999998764  799999999999999999998876654321   1112222211     1


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      ....|..+|  .++++++||+.+++...
T Consensus       194 ~~~~s~~~~--~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         194 HDMGSLGLY--RSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             SSCCCHHHH--HHHHHHTTEEEEEEEEC
T ss_pred             CCCCCHHHH--HHHHHHcCCceEEEEEC
Confidence            234588999  99999999998887654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=1.4e-14  Score=119.84  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=87.7

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-ce
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DA  135 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~  135 (239)
                      ..+++.++ ..+..++||||||+|.                                      +.+|+.+ +++. . |+
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence            45666666 6678899999999998                                      3345443 3343 3 99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      |++.++||+++|++..++|++|+++|+|||+|+|.|.+......         ..|-     ..+...||.++|  ++++
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~--~~l~  225 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHY--KRLF  225 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHH--HHHH
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHH--HHHH
Confidence            99999999999999999999999999999999999987554321         1121     124556899999  9999


Q ss_pred             hhCCCceeeEEE
Q 045543          216 AKNGFKGVNYES  227 (239)
Q Consensus       216 ~~aGf~~~~~~~  227 (239)
                      +++||++++...
T Consensus       226 ~~aGf~ii~~~~  237 (254)
T d1xtpa_         226 NESGVRVVKEAF  237 (254)
T ss_dssp             HHHTCCEEEEEE
T ss_pred             HHcCCEEEEEEe
Confidence            999999988755

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-14  Score=114.34  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC-c-ceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN-G-DAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~-~-D~~~l~~vl  142 (239)
                      ..+..+|||||||+|.                                        ..+|+.+ +++. . |+|++..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4566899999999998                                        3456655 4443 3 999999999


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                      |++++++..++|+++++.|+|||+++|.|...++...          ++     .......|+.++|  .++++++||++
T Consensus       138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~~~~~~~~~~--~~l~~~aGf~i  200 (222)
T d2ex4a1         138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDSSVCRDLDVV--RRIICSAGLSL  200 (222)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTTEEEEBHHHH--HHHHHHTTCCE
T ss_pred             ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCceeeCCHHHH--HHHHHHcCCEE
Confidence            9999999899999999999999999999987654311          11     0113456799999  99999999999


Q ss_pred             eeEEEc
Q 045543          223 VNYESF  228 (239)
Q Consensus       223 ~~~~~~  228 (239)
                      ++....
T Consensus       201 i~~~~q  206 (222)
T d2ex4a1         201 LAEERQ  206 (222)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            887654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=1.1e-13  Score=110.10  Aligned_cols=110  Identities=20%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             CcceEEEeCCCCCC----------------------------Ccccccc-ccCC-c-ceeeechhhhcCChhHHHHHHHH
Q 045543          108 KIKQLVDVGGGCGK----------------------------CGWKMFQ-KILN-G-DAILMKLILRNWDDEHCLSLLKN  156 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------~~gD~~~-~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~  156 (239)
                      +..+|||||||+|.                            +.+|+.+ +++. . |+|++.++||+++|.  .++|++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~--~~~l~~  113 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALKE  113 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHH
T ss_pred             CCCeEEEECCCCcccccccceEEEEeCChhhccccccccccccccccccccccccccccccccccccccccc--ccchhh
Confidence            34589999999999                            5566655 4554 3 999999999999875  489999


Q ss_pred             HHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEE
Q 045543          157 CYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYES  227 (239)
Q Consensus       157 ~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~  227 (239)
                      ++++|+|||+++|.+......     .... ...+........+...+|.+++  .++|+++||+.+++..
T Consensus       114 ~~~~L~pgG~l~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~s~~~l--~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         114 AYRILKKGGYLIVGIVDRESF-----LGRE-YEKNKEKSVFYKNARFFSTEEL--MDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             HHHHEEEEEEEEEEEECSSSH-----HHHH-HHHTTTC-CCSTTCCCCCHHHH--HHHHHHTTCEEEEEEE
T ss_pred             hhhcCCCCceEEEEecCCcch-----hHHh-hhhccccccccccccCCCHHHH--HHHHHHcCCeEEEEEE
Confidence            999999999999987643210     0000 0000000011224456789999  9999999999887654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=1.4e-13  Score=111.86  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=87.9

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc--ce
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG--DA  135 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~--D~  135 (239)
                      -+++..+ +++..+|||||||+|.                                       +.+|..+ ++|.+  |+
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~   85 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   85 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence            4567788 9999999999999999                                       4456555 55654  99


Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCCccccChhhccHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSGEKERTKQEYYGMAL  214 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~g~~rt~~e~~~~~l  214 (239)
                      |++.+++|+++|.  ..+|+++++.|+|||++++.+...++.+   ..   ..+++. .........+..+..+|  ..+
T Consensus        86 v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~  155 (234)
T d1xxla_          86 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VL---DEFVNHLNRLRDPSHVRESSLSEW--QAM  155 (234)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHHH--HHH
T ss_pred             eeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH---HH---HHHHHHHHhhCCCcccccCCHHHH--HHH
Confidence            9999999999875  4899999999999999999988665432   11   112221 11111114566788999  999


Q ss_pred             HhhCCCceeeEEE
Q 045543          215 TAKNGFKGVNYES  227 (239)
Q Consensus       215 l~~aGf~~~~~~~  227 (239)
                      ++++||.+..+..
T Consensus       156 ~~~~gf~~~~~~~  168 (234)
T d1xxla_         156 FSANQLAYQDIQK  168 (234)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHCCCceeEEEE
Confidence            9999998876543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1e-12  Score=107.27  Aligned_cols=120  Identities=12%  Similarity=0.026  Sum_probs=87.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~  133 (239)
                      ...+.+.+. +.+..+|||||||+|.                                         +.+|+.+..+. .
T Consensus        22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            345677777 8888999999999998                                         44555553443 3


Q ss_pred             -ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHH
Q 045543          134 -DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 -D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~  212 (239)
                       |+|++..++|+++|..  ++|+++++.|+|||+++|.+......+...   .......     ........+..++  .
T Consensus       101 fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~--~  168 (245)
T d1nkva_         101 CDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQACG-----VSSTSDFLTLPGL--V  168 (245)
T ss_dssp             EEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHTTT-----CSCGGGSCCHHHH--H
T ss_pred             eeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChH---HHHHHhc-----cCCCcccCCHHHH--H
Confidence             9999999999998764  899999999999999999988765543221   1111110     1112345688899  9


Q ss_pred             HHHhhCCCceeeEEEc
Q 045543          213 ALTAKNGFKGVNYESF  228 (239)
Q Consensus       213 ~ll~~aGf~~~~~~~~  228 (239)
                      ++++++||+++.....
T Consensus       169 ~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         169 GAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             HHHHTTTBCCCEEEEC
T ss_pred             HHHHHcCCEEEEEEeC
Confidence            9999999998876543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=3.9e-12  Score=106.30  Aligned_cols=129  Identities=19%  Similarity=0.267  Sum_probs=95.2

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-  133 (239)
                      ...+++.+. +++..+|||||||.|.                                         ...|+ ..++.. 
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~-~~~~~~f  118 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW-EDFAEPV  118 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG-GGCCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh-hhhccch
Confidence            457788887 8999999999999998                                         11222 134444 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCC-----ChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEA-----TPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~-----~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      |.|+...++++++++.-..++++|++.|+|||+++|.+.+..+....     ..........|+..--.+++|...|.++
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~  198 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM  198 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence            99999999999999888899999999999999999988665432110     0000011222333333467999999999


Q ss_pred             ccHHHHHhhCCCceeeEEEc
Q 045543          209 YYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +  .+.++++||++..+...
T Consensus       199 l--~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         199 M--VEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             H--HHHHHHTTCBCCCCEEC
T ss_pred             h--hhhHHhhccccceeeec
Confidence            9  99999999999887764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=6.9e-11  Score=98.77  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=94.6

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCCc-
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILNG-  133 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~~-  133 (239)
                      ...+++... +++..+|||||||.|.                                         ..+|+- .+|.. 
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~-~~~~~f  128 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPV  128 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh-cccccc
Confidence            457778887 8999999999999998                                         334442 34443 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCC-----CCChhhhhhhhhhHHHhhccCCccccChhh
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIP-----EATPATREASSIDIIMLMQLSGEKERTKQE  208 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~-----~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e  208 (239)
                      |.|+.-..+.++..+.-..++++|++.|+|||+++|.+.....+.     ..+.........+...--.+++|...|..+
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~  208 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  208 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence            999988988889877777999999999999999999987643321     111011112223333223357999999999


Q ss_pred             ccHHHHHhhCCCceeeEEEc
Q 045543          209 YYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       209 ~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +  ..+++++||++.++..+
T Consensus       209 ~--~~~~e~agf~v~~~~~~  226 (285)
T d1kpga_         209 V--QECASANGFTVTRVQSL  226 (285)
T ss_dssp             H--HHHHHTTTCEEEEEEEC
T ss_pred             H--HHHHHHhchhhcccccc
Confidence            9  99999999999988765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.21  E-value=1.7e-11  Score=102.22  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccCCc-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KILNG-D  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p~~-D  134 (239)
                      .+++....+.+..+|||||||+|.                                         +.+|+.+ +++.. |
T Consensus        17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence            344433226778999999999997                                         3456555 44444 9


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +|++.++||+++|..  ++|+++++.|+|||++++.|..
T Consensus        97 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          97 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECC
Confidence            999999999998875  7899999999999999999853

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.16  E-value=2.3e-12  Score=91.27  Aligned_cols=61  Identities=11%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-----CCCCCCeEecChhhHHHH
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-----AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-----~~~~~~~y~~t~~s~~l~   64 (239)
                      |||||+|+++|  +|+|++|||+++++ ++.+++.+.|+||+|++.     .++++++|+|||+|+.|+
T Consensus        32 Lgi~d~l~~~~--~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~lt~~s~~Lv   97 (101)
T d1fp2a1          32 MNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLV   97 (101)
T ss_dssp             TTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTS
T ss_pred             cCcHHHHHHcC--CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeecCCCCeEecCHHHHHhh
Confidence            79999998765  89999999999998 222446799999999998     245678999999998664

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.16  E-value=4.2e-12  Score=87.20  Aligned_cols=56  Identities=11%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhHHHH
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~~l~   64 (239)
                      |||||+|++    ||+|++|||+++|+    +++.+.|+||+|++.   .+.+++.|++||.|+.|.
T Consensus        24 L~ifd~l~~----gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~~s~~L~   82 (85)
T d1tw3a1          24 LRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLA   82 (85)
T ss_dssp             TTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGS
T ss_pred             cCcHHHhcc----CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEecCCCeEecCHHHHHhh
Confidence            799999987    89999999999999    999999999999998   566789999999998763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.13  E-value=1.4e-10  Score=91.38  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=60.4

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCCc-cee
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      .+++... +-...+|||||||+|.                                       ..+|+.+ +.+.. |+|
T Consensus        21 ~~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I   99 (198)
T d2i6ga1          21 DVLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFI   99 (198)
T ss_dssp             HHHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEE
T ss_pred             HHHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEE
Confidence            4555555 5566799999999998                                       3345554 23334 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      ++..++|++++++..++|++++++|+|||++++....
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999999999999999999999999999999998765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=2.8e-10  Score=95.25  Aligned_cols=127  Identities=19%  Similarity=0.235  Sum_probs=93.3

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--  132 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--  132 (239)
                      ...+++... +++..+|||||||.|.                                         ...|+  +.++  
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~--~~~~~~  126 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW--EEFDEP  126 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG--GGCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc--cccccc
Confidence            456778887 8999999999999998                                         12232  2232  


Q ss_pred             cceeeechhhhcCCh-------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCC-------CChhhhhhhhhhHHHhhcc
Q 045543          133 GDAILMKLILRNWDD-------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPE-------ATPATREASSIDIIMLMQL  198 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d-------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~-------~~~~~~~~~~~dl~ml~~~  198 (239)
                      -|.|+.-..+.++++       +.-..++++|++.|+|||++++...+.++...       .|  .......++..--.+
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p--~~~~~~~~fi~kyiF  204 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSP--MSLLRFIKFILTEIF  204 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCC--HHHHHHHHHHHHHTC
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCc--hhhcccchHHHHHhc
Confidence            399999999988876       45679999999999999999999987665321       11  011122233222245


Q ss_pred             CCccccChhhccHHHHHhhCCCceeeEEEcC
Q 045543          199 SGEKERTKQEYYGMALTAKNGFKGVNYESFV  229 (239)
Q Consensus       199 ~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~~  229 (239)
                      ++|...|..++  ...++++||++.....++
T Consensus       205 pgg~lps~~~~--~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         205 PGGRLPRISQV--DYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             TTCCCCCHHHH--HHHHHHHTCEEEEEEECG
T ss_pred             CCCCCCCHHHH--Hhhhcccccccceeeecc
Confidence            79999999999  999999999998887664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.12  E-value=1.1e-10  Score=93.79  Aligned_cols=116  Identities=12%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------Ccccccc-ccCCc-ceeeechhhhcCChh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------CGWKMFQ-KILNG-DAILMKLILRNWDDE  148 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------~~gD~~~-~~p~~-D~~~l~~vlH~~~d~  148 (239)
                      +.+..+|||||||+|.                                   +.+|+.+ +.++. |+|++.++||+.+|.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~   97 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP   97 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH
Confidence            5566799999999998                                   3345443 33344 999999999999887


Q ss_pred             HHHHHHHHHH-hhCCCCceEEEEeeecCCCCC-----CChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCce
Q 045543          149 HCLSLLKNCY-EAIPGNGKIIIIDSTTVVIPE-----ATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKG  222 (239)
Q Consensus       149 ~~~~iL~~~~-~aL~pgg~lli~d~~~~~~~~-----~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~  222 (239)
                        ..+|++++ +.|+|||+++|.-+.......     ................  ...-+.+|.+++  +++++++||++
T Consensus        98 --~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l--~~~l~~~Gf~i  171 (225)
T d2p7ia1          98 --VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTL--ERDASRAGLQV  171 (225)
T ss_dssp             --HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHH--HHHHHHTTCEE
T ss_pred             --HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHH--HHHHHHCCCEE
Confidence              48899998 789999999996432110000     0000000000000011  112345688999  99999999998


Q ss_pred             eeEEE
Q 045543          223 VNYES  227 (239)
Q Consensus       223 ~~~~~  227 (239)
                      ++...
T Consensus       172 ~~~~~  176 (225)
T d2p7ia1         172 TYRSG  176 (225)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=4e-11  Score=95.52  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=58.9

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCC-c-cee
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILN-G-DAI  136 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~-~-D~~  136 (239)
                      .++..+  +++..+|||||||+|.                                      +.+|+.+ +++. . |+|
T Consensus        29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I  106 (226)
T d1ve3a1          29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYV  106 (226)
T ss_dssp             HHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEE
T ss_pred             HHHHHh--cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEE
Confidence            344443  3455799999999999                                      3445544 4554 3 999


Q ss_pred             eechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          137 LMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       137 ~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      ++..++|++++++..++|+++++.|+|||+++|....
T Consensus       107 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         107 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999999999888889999999999999999987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.5e-11  Score=96.49  Aligned_cols=78  Identities=13%  Similarity=0.019  Sum_probs=57.4

Q ss_pred             ceeeechhhhcCC--hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWD--DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~--d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |++++..+||+.+  .++-..+++++++.|||||++++.+........     .....        . .....|.+++  
T Consensus       154 D~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~-----~~~~~--------~-~~~~~~~~~~--  217 (257)
T d2a14a1         154 DCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM-----VGKRE--------F-SCVALEKGEV--  217 (257)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----ETTEE--------E-ECCCCCHHHH--
T ss_pred             cEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-----ecccc--------c-cccCCCHHHH--
Confidence            9999999999875  356789999999999999999998865322100     00000        0 1123588999  


Q ss_pred             HHHHhhCCCceeeEEE
Q 045543          212 MALTAKNGFKGVNYES  227 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~~  227 (239)
                      +++|++|||+++++..
T Consensus       218 ~~~l~~aGf~v~~~~~  233 (257)
T d2a14a1         218 EQAVLDAGFDIEQLLH  233 (257)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEE
Confidence            9999999999988754

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.04  E-value=6.8e-11  Score=83.98  Aligned_cols=64  Identities=48%  Similarity=0.751  Sum_probs=53.2

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-------CCCC----CCeEecChhhHHHH
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-------AGDD----RRLQRLAPVAKYVL   64 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-------~~~~----~~~y~~t~~s~~l~   64 (239)
                      |||||+|+++|++.++|+.|||.+++.+++..+..++|+||.|++.       ...+    ..+|++||.|++|+
T Consensus        30 LgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk~Lv  104 (107)
T d1kyza1          30 LDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLV  104 (107)
T ss_dssp             TTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHS
T ss_pred             cCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEEecchhHHhhc
Confidence            7999999998877899999999999996565577899999999986       1112    23699999999985

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.03  E-value=2.8e-10  Score=88.40  Aligned_cols=43  Identities=7%  Similarity=-0.013  Sum_probs=38.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      |+++.+.++|..++++....++++++.|||||++++.......
T Consensus       101 D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_         101 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             eEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            9999999999999999999999999999999999887665433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.03  E-value=3.3e-10  Score=91.74  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             hccCCCCcceEEEeCCCCCC---------------------------------------Cccccccc--cCC--cceeee
Q 045543          102 YYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQK--ILN--GDAILM  138 (239)
Q Consensus       102 ~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~~--~p~--~D~~~l  138 (239)
                      .++ +.+..+|||||||+|.                                       +-+|...+  .+.  .|+.++
T Consensus        69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            445 7788999999999998                                       22333332  222  277777


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN  218 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a  218 (239)
                      .+.+|++++  ...+++++++.|+|||+++|.+.....+...++                    ....++.  .+.|+++
T Consensus       148 ~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------~~~~~e~--~~~L~~a  203 (230)
T d1g8sa_         148 YEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------KEIFKEQ--KEILEAG  203 (230)
T ss_dssp             EECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------HHHHHHH--HHHHHHH
T ss_pred             eccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------HHHHHHH--HHHHHHc
Confidence            788887754  467899999999999999998876554433221                    1123567  8999999


Q ss_pred             CCceeeEEEcCC---ceeEEEEE
Q 045543          219 GFKGVNYESFVC---NFYIMEFI  238 (239)
Q Consensus       219 Gf~~~~~~~~~~---~~~vie~~  238 (239)
                      ||++++.+.+.+   .+.++.++
T Consensus       204 GF~ive~idL~py~~~H~~vvg~  226 (230)
T d1g8sa_         204 GFKIVDEVDIEPFEKDHVMFVGI  226 (230)
T ss_dssp             TEEEEEEEECTTTSTTEEEEEEE
T ss_pred             CCEEEEEecCCCCcCCeEEEEEE
Confidence            999999888743   47676654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.3e-10  Score=94.29  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             ceeeechhhhcCC--hhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccH
Q 045543          134 DAILMKLILRNWD--DEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYG  211 (239)
Q Consensus       134 D~~~l~~vlH~~~--d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~  211 (239)
                      |+|++..+||..+  .++-.+.|+++++.|||||.|++.+.......          ...-..+    ..-..|.+++  
T Consensus       159 D~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----------~~~~~~~----~~~~~t~e~v--  222 (263)
T d2g72a1         159 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----------LAGEARL----TVVPVSEEEV--  222 (263)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE----------EETTEEE----ECCCCCHHHH--
T ss_pred             CeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc----------ccCCccc----ccCCCCHHHH--
Confidence            9999999999875  34678999999999999999999887532210          0000000    1123588999  


Q ss_pred             HHHHhhCCCceeeEE
Q 045543          212 MALTAKNGFKGVNYE  226 (239)
Q Consensus       212 ~~ll~~aGf~~~~~~  226 (239)
                      +++|+++||++++..
T Consensus       223 ~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         223 REALVRSGYKVRDLR  237 (263)
T ss_dssp             HHHHHHTTEEEEEEE
T ss_pred             HHHHHHCCCeEEEEE
Confidence            999999999988654

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.97  E-value=1.3e-10  Score=80.60  Aligned_cols=55  Identities=11%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             CccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C--CCCCCeEecChhhHHH
Q 045543            1 MGVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A--GDDRRLQRLAPVAKYV   63 (239)
Q Consensus         1 Lgifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~--~~~~~~y~~t~~s~~l   63 (239)
                      |||||+|++    ||+|++|||+++|+    +++.+.||||+|+++   .  +.+.+.|++|+.++.|
T Consensus        30 L~ifd~L~~----gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~d~~~~~~~t~~g~lL   89 (92)
T d1qzza1          30 LRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLL   89 (92)
T ss_dssp             TTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGG
T ss_pred             cCchHHHhC----CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeecCCCceecccHHHHhc
Confidence            799999997    89999999999999    999999999999998   2  3345679999998765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.9e-10  Score=91.11  Aligned_cols=81  Identities=20%  Similarity=0.041  Sum_probs=54.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhH-HHhhccCCccccChhhccHH
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDI-IMLMQLSGEKERTKQEYYGM  212 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl-~ml~~~~~g~~rt~~e~~~~  212 (239)
                      |+|++.++||+++|.  .+.|+++++.|+|||.++|...-  +.  ..+   ...+..+ ..+........++.+++  .
T Consensus       125 D~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~--~~--~~~---~~l~~~~~~~~~~~~~~~~~~~~~~--~  193 (280)
T d1jqea_         125 DFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVS--GS--SGW---DKLWKKYGSRFPQDDLCQYITSDDL--T  193 (280)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEC--TT--SHH---HHHHHHHGGGSCCCTTSCCCCHHHH--H
T ss_pred             eEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEec--Cc--chH---HHHHHHHHHhcCCCcccccCCHHHH--H
Confidence            999999999999876  48999999999999999987542  11  110   0011111 01110112345678889  9


Q ss_pred             HHHhhCCCceeeE
Q 045543          213 ALTAKNGFKGVNY  225 (239)
Q Consensus       213 ~ll~~aGf~~~~~  225 (239)
                      ++|.+.||..++.
T Consensus       194 ~~L~~~G~~~~~~  206 (280)
T d1jqea_         194 QMLDNLGLKYECY  206 (280)
T ss_dssp             HHHHHHTCCEEEE
T ss_pred             HHHHHCCCceEEE
Confidence            9999999986543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=1.3e-09  Score=88.23  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-cee
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAI  136 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~  136 (239)
                      ..+...+. ..+.++|||||||+|.                                      +.+|+.+ +++.. |+|
T Consensus        31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I  109 (251)
T d1wzna1          31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV  109 (251)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE
T ss_pred             HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchH
Confidence            34555555 6777899999999999                                      4566655 45544 988


Q ss_pred             eec-hhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          137 LMK-LILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       137 ~l~-~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ++. +++|.++.++..+.|+++++.|+|||+++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            875 6888888888899999999999999999874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6e-09  Score=83.66  Aligned_cols=43  Identities=7%  Similarity=-0.055  Sum_probs=38.9

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      |+++.+.++|.+++++-...+++++++|+|||++++.....++
T Consensus       131 d~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~  173 (229)
T d2bzga1         131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDP  173 (229)
T ss_dssp             EEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCT
T ss_pred             eEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCC
Confidence            9999999999999999999999999999999999887766543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=1.5e-09  Score=87.18  Aligned_cols=64  Identities=19%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             CCCcceEEEeCCCCCC---------------------------------Ccccccc-ccCC-c-ceeee-chhhhcCChh
Q 045543          106 FEKIKQLVDVGGGCGK---------------------------------CGWKMFQ-KILN-G-DAILM-KLILRNWDDE  148 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~---------------------------------~~gD~~~-~~p~-~-D~~~l-~~vlH~~~d~  148 (239)
                      .++..+|||||||+|.                                 +.+|+.+ +++. . |+|++ ..++|+++|.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             cCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            3466799999999999                                 4455544 5554 3 99886 6799999887


Q ss_pred             HHHHHHHHHHhhCCCCceEEEEe
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      +  ++|+++++.|+|||.+++..
T Consensus       120 ~--~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         120 D--KAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             H--HHHHHHHHHEEEEEEEEEEE
T ss_pred             H--HHHHHHHhhcCcCcEEEEEE
Confidence            5  78999999999999998864

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=1.4e-09  Score=77.37  Aligned_cols=64  Identities=38%  Similarity=0.580  Sum_probs=49.1

Q ss_pred             CccchHhHhcC-CCCCCCHHHHHHhCCCC--CCCChhhHHHHHHHhccC-------CC-CC---CCeEecChhhHHHH
Q 045543            1 MGVFEIMAKAG-PRAKLSAAEIEAQMPSH--NPNAAVMLDRVLRRSLSS-------AG-DD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         1 Lgifd~L~~~g-~~~~~t~~eLA~~~g~~--~~~~~~~l~rlL~~L~~~-------~~-~~---~~~y~~t~~s~~l~   64 (239)
                      |||||+|+++| +++++|++|||.++.+.  +|..+..|.|+||.|++.       .. .+   ..+|.+||.|++|+
T Consensus        29 LgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltpvsk~Lv  106 (110)
T d1fp1d1          29 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLV  106 (110)
T ss_dssp             TTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGS
T ss_pred             cCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeeeEEecchhhHhhc
Confidence            79999999886 45679999999999852  222345699999999986       11 11   23699999999885

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.65  E-value=1.8e-08  Score=81.91  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-----------------------------------------Ccccccc-ccC-C-c
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQ-KIL-N-G  133 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~-~~p-~-~  133 (239)
                      .++..|.  ++..+|||||||+|.                                         ..+|.+. ++. . .
T Consensus        16 ~lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~   93 (252)
T d1ri5a_          16 CLIRLYT--KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE   93 (252)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred             HHHHHhC--CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence            3455553  566899999999998                                         3456654 332 3 3


Q ss_pred             -ceeeechhhhcC--ChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 -DAILMKLILRNW--DDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 -D~~~l~~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                       |+|++..++|+.  +.++...+|+++++.|+|||++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence             999999999986  4567789999999999999998874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.61  E-value=1.8e-08  Score=81.42  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             CcceEEEeCCCCCC--------------------------------------Ccccccc-ccCCc-ceeeec-hhhhcC-
Q 045543          108 KIKQLVDVGGGCGK--------------------------------------CGWKMFQ-KILNG-DAILMK-LILRNW-  145 (239)
Q Consensus       108 ~~~~vlDvGGG~G~--------------------------------------~~gD~~~-~~p~~-D~~~l~-~vlH~~-  145 (239)
                      +.++|||||||+|.                                      +.+|+.+ ++++. |+|++. +++|++ 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~  116 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccC
Confidence            34789999999999                                      4566655 34444 988864 677766 


Q ss_pred             ChhHHHHHHHHHHhhCCCCceEEE
Q 045543          146 DDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       146 ~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      +.++..++|+++++.|+|||.+++
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         117 DSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            567788999999999999998876

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.59  E-value=2.8e-08  Score=77.67  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=57.4

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-  133 (239)
                      .-+++.++ ..+..+|||||||+|.                                         ..+|++++++. . 
T Consensus        42 ~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f  120 (194)
T d1dusa_          42 KILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY  120 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred             HHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence            34566676 6778999999999998                                         45787776664 3 


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++.-.+|.. .+...++++++.+.|+|||+++|+
T Consensus       121 D~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         121 NKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence            999998888754 455678999999999999999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=3e-08  Score=81.05  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=73.3

Q ss_pred             HHHHHHhcccccHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------Cccc
Q 045543           84 LNTAMLSHNSIVMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------CGWK  125 (239)
Q Consensus        84 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------~~gD  125 (239)
                      |-.+-+..++.....+ +.+.  .+..+|||+|||+|.                                      ..+|
T Consensus        99 FGTG~H~TT~l~l~~l-~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d  175 (254)
T d2nxca1          99 FGTGHHETTRLALKAL-ARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS  175 (254)
T ss_dssp             ---CCSHHHHHHHHHH-HHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCccccchhhHHHHHH-Hhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecc
Confidence            5444444444433333 3333  456899999999999                                      3344


Q ss_pred             cccccCC--cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccc
Q 045543          126 MFQKILN--GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKE  203 (239)
Q Consensus       126 ~~~~~p~--~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~  203 (239)
                      +.+.++.  .|+|+.....     +....+++.+++.|+|||+|++.+....                            
T Consensus       176 ~~~~~~~~~fD~V~ani~~-----~~l~~l~~~~~~~LkpGG~lilSgil~~----------------------------  222 (254)
T d2nxca1         176 LEAALPFGPFDLLVANLYA-----ELHAALAPRYREALVPGGRALLTGILKD----------------------------  222 (254)
T ss_dssp             HHHHGGGCCEEEEEEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEGG----------------------------
T ss_pred             ccccccccccchhhhcccc-----ccHHHHHHHHHHhcCCCcEEEEEecchh----------------------------
Confidence            4444443  3998875333     3356789999999999999998654311                            


Q ss_pred             cChhhccHHHHHhhCCCceeeEEEcCCceeEEEEE
Q 045543          204 RTKQEYYGMALTAKNGFKGVNYESFVCNFYIMEFI  238 (239)
Q Consensus       204 rt~~e~~~~~ll~~aGf~~~~~~~~~~~~~vie~~  238 (239)
                       ..+++  .+.++++||++++........+ +.++
T Consensus       223 -~~~~v--~~~~~~~Gf~~~~~~~~~~Wv~-l~~~  253 (254)
T d2nxca1         223 -RAPLV--REAMAGAGFRPLEEAAEGEWVL-LAYG  253 (254)
T ss_dssp             -GHHHH--HHHHHHTTCEEEEEEEETTEEE-EEEE
T ss_pred             -hHHHH--HHHHHHCCCEEEEEEEECCEEE-EEEe
Confidence             12455  8889999999988877655443 3444

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=1.6e-07  Score=75.29  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhCCCceeeEEEc
Q 045543          149 HCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKNGFKGVNYESF  228 (239)
Q Consensus       149 ~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~aGf~~~~~~~~  228 (239)
                      +...+++++++.|+|||+++|.......+...+                    .+....+.  .+++ +.||++.+.+.+
T Consensus       156 ~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~--------------------~~~v~~~v--~~l~-~~gf~iie~i~L  212 (227)
T d1g8aa_         156 QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE--------------------PEQVFREV--EREL-SEYFEVIERLNL  212 (227)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC--------------------HHHHHHHH--HHHH-HTTSEEEEEEEC
T ss_pred             hHHHHHHHHHHhcccCCeEEEEEECCccCCCCC--------------------HHHHHHHH--HHHH-HcCCEEEEEEcC
Confidence            456889999999999999998754332222111                    00111233  4444 569999998877


Q ss_pred             CC---ceeEEEEEC
Q 045543          229 VC---NFYIMEFIK  239 (239)
Q Consensus       229 ~~---~~~vie~~k  239 (239)
                      .+   .+.++.++|
T Consensus       213 ~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         213 EPYEKDHALFVVRK  226 (227)
T ss_dssp             TTTSSSEEEEEEEC
T ss_pred             CCCCCceEEEEEEe
Confidence            43   588998887

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.6e-08  Score=79.95  Aligned_cols=72  Identities=10%  Similarity=-0.007  Sum_probs=43.1

Q ss_pred             eeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALT  215 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll  215 (239)
                      +.....++++.+.  ..+++++++.|+|||++++.+......       .....        .........+.+  ...|
T Consensus       130 ~~~~~~~~~~~~~--~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~--~~~l  190 (229)
T d1zx0a1         130 YPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSK--------YSDITIMFEETQ--VPAL  190 (229)
T ss_dssp             CCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTT--------CSCHHHHHHHHT--HHHH
T ss_pred             cccccccccccCH--HHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhh--------hhhcchhhhhHH--HHHH
Confidence            3357777777665  489999999999999988744221100       00000        001122233455  7778


Q ss_pred             hhCCCceeeEE
Q 045543          216 AKNGFKGVNYE  226 (239)
Q Consensus       216 ~~aGf~~~~~~  226 (239)
                      .++||+..++.
T Consensus       191 ~~agF~~~~i~  201 (229)
T d1zx0a1         191 LEAGFRRENIR  201 (229)
T ss_dssp             HHTTCCGGGEE
T ss_pred             HHCCCeeEEEE
Confidence            88999876653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.42  E-value=8.5e-08  Score=75.04  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |+|+++|||+.++++...++|++++++|+|||.|+|
T Consensus       134 DvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         134 DAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             cEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            999999999999999999999999999999998776

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.6e-07  Score=81.38  Aligned_cols=78  Identities=21%  Similarity=0.286  Sum_probs=57.7

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC---------------------------------------------------Ccc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK---------------------------------------------------CGW  124 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~---------------------------------------------------~~g  124 (239)
                      ...+++.++ +.+..++||||||.|.                                                   ..+
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            456777777 8888999999999998                                                   134


Q ss_pred             cccc-c-----cCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          125 KMFQ-K-----ILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       125 D~~~-~-----~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      +|++ +     ++.+|++++.+.+|   +++....|+++++.|||||+|++.+.+.+..
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             chhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence            4543 1     22358888776553   2445688999999999999999988766544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.6e-07  Score=79.31  Aligned_cols=78  Identities=17%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------------------Cccc
Q 045543           96 MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------------------CGWK  125 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------------------~~gD  125 (239)
                      ...+++.+. +.+..+|+|||||.|.                                                  +.||
T Consensus       140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            356777777 8888999999999998                                                  3456


Q ss_pred             ccc-ccC----CcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCC
Q 045543          126 MFQ-KIL----NGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVI  177 (239)
Q Consensus       126 ~~~-~~p----~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~  177 (239)
                      |.+ ++.    .+|+|++.+.+| +  ++....|+++++.|||||+|++.+.+.+..
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             ccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence            655 332    248888876664 3  344678999999999999999988765543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=3.4e-07  Score=75.70  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             ceeee-chhhhcCCh-----hHHHHHHHHHHhhCCCCceEEE
Q 045543          134 DAILM-KLILRNWDD-----EHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       134 D~~~l-~~vlH~~~d-----~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |++++ .++++++++     ++..++|+++++.|+|||+|++
T Consensus       131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            76664 568887754     5678999999999999998877

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.34  E-value=5.2e-07  Score=71.33  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             hccCCCCcceEEEeCCCCCC---------------------------------------Ccccccc-ccCC--c-ceeee
Q 045543          102 YYKGFEKIKQLVDVGGGCGK---------------------------------------CGWKMFQ-KILN--G-DAILM  138 (239)
Q Consensus       102 ~~~~~~~~~~vlDvGGG~G~---------------------------------------~~gD~~~-~~p~--~-D~~~l  138 (239)
                      .++ +++..+|||||||+|.                                       +-+|... +.+.  . ++.++
T Consensus        51 ~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          51 RLK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             cCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence            355 7889999999999998                                       2333332 1221  1 22233


Q ss_pred             chhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCCccccChhhccHHHHHhhC
Q 045543          139 KLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSGEKERTKQEYYGMALTAKN  218 (239)
Q Consensus       139 ~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~rt~~e~~~~~ll~~a  218 (239)
                      .+.++++.+  ...+|+++++.|+|||+++|.+.....+...++.    .                ...+.  .+.+ ++
T Consensus       130 ~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~----~----------------~~~~~--~~~l-~~  184 (209)
T d1nt2a_         130 YQDIAQKNQ--IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE----E----------------VFKSV--LKEM-EG  184 (209)
T ss_dssp             EECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH----H----------------HHHHH--HHHH-HT
T ss_pred             EecccChhh--HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHH----H----------------HHHHH--HHHH-Hc
Confidence            334444443  4588999999999999999987543222211100    0                01112  3334 37


Q ss_pred             CCceeeEEEcCC---ceeEEEE
Q 045543          219 GFKGVNYESFVC---NFYIMEF  237 (239)
Q Consensus       219 Gf~~~~~~~~~~---~~~vie~  237 (239)
                      ||++++...+.+   .+.+|-+
T Consensus       185 gf~i~E~i~L~P~~~~H~~v~~  206 (209)
T d1nt2a_         185 DFKIVKHGSLMPYHRDHIFIHA  206 (209)
T ss_dssp             TSEEEEEEECTTTCTTEEEEEE
T ss_pred             CCEEEEEEccCCCccCcEEEEE
Confidence            999999887743   4666654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.1e-07  Score=75.28  Aligned_cols=57  Identities=19%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             CCcceEEEeCCCCCC------------------------------------Ccccccc-ccCCc--ceeeechhhhcCCh
Q 045543          107 EKIKQLVDVGGGCGK------------------------------------CGWKMFQ-KILNG--DAILMKLILRNWDD  147 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~------------------------------------~~gD~~~-~~p~~--D~~~l~~vlH~~~d  147 (239)
                      .+..+|||||||+|.                                    +.+|..+ +++.+  |+|+..+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            567899999999998                                    4566655 55543  99998888876   


Q ss_pred             hHHHHHHHHHHhhCCCCceEEEEee
Q 045543          148 EHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       148 ~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                            ++.+++.|||||++++..+
T Consensus       160 ------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 ------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ------HHHHHHHEEEEEEEEEEEE
T ss_pred             ------HHHHHHHhCCCcEEEEEee
Confidence                  4668899999999999865

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=4.8e-07  Score=71.68  Aligned_cols=65  Identities=14%  Similarity=0.353  Sum_probs=50.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------------------------------CccccccccC-Cc
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------------------------------CGWKMFQKIL-NG  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------------------------------~~gD~~~~~p-~~  133 (239)
                      ..+++.++ +++..+|||||||+|.                                          +.+|..+..+ .+
T Consensus        65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            34566777 8899999999999998                                          4466665333 23


Q ss_pred             --ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 --DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 --D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                        |+|++...+|+.++        ++.+.|+|||+|++.
T Consensus       144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred             chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence              99999999998875        346779999999884

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=7.6e-07  Score=72.82  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             HHHHHHHhccccc----HHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------
Q 045543           83 VLNTAMLSHNSIV----MNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------  121 (239)
Q Consensus        83 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------  121 (239)
                      .|...|...+...    +..++...+ .++..+|||+|||+|.                                     
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~  146 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG  146 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc
Confidence            3555666555432    556777888 8999999999999999                                     


Q ss_pred             --------Ccccccc-ccCCc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          122 --------CGWKMFQ-KILNG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       122 --------~~gD~~~-~~p~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                              +.+|+.+ ++|++  |.|++     |.++..  ..+.+++++|||||++++..+..
T Consensus       147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         147 QPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             SCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCcc
Confidence                    4456655 56653  98875     466653  77999999999999999876543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.08  E-value=1.1e-06  Score=67.81  Aligned_cols=69  Identities=19%  Similarity=0.114  Sum_probs=51.6

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccC--Ccc
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KIL--NGD  134 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p--~~D  134 (239)
                      .++..+. ..+..+|||||||+|.                                        +.+|+.+ ..+  ..|
T Consensus        24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HHHHhcC-CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            4555666 7888999999999998                                        4455544 222  249


Q ss_pred             eeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          135 AILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       135 ~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ++++....|++     ..+++.+.+.|+|||++++...
T Consensus       103 ~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         103 IAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             EEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence            99887766543     4789999999999999987653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.05  E-value=1e-06  Score=71.46  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             HHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------
Q 045543           84 LNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------  121 (239)
Q Consensus        84 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------  121 (239)
                      |...|...+..    .+..++...+ ..+..+|||+|||+|.                                      
T Consensus        58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~  136 (250)
T d1yb2a1          58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI  136 (250)
T ss_dssp             HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC
T ss_pred             HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC
Confidence            55556544443    2445666777 8889999999999998                                      


Q ss_pred             -----CccccccccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          122 -----CGWKMFQKILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       122 -----~~gD~~~~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                           ..+|+.+.+++ . |.+++     |.++..  ..|++++++|+|||+|++.-
T Consensus       137 ~nv~~~~~Di~~~~~~~~fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         137 GNVRTSRSDIADFISDQMYDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             TTEEEECSCTTTCCCSCCEEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEEeeeecccccceeeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEe
Confidence                 44566555554 2 88875     344442  67999999999999998853

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.2e-06  Score=67.36  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             HHHhhcc-CCCCcceEEEeCCCCCC-----------------------------------------------Cccccccc
Q 045543           98 RILDYYK-GFEKIKQLVDVGGGCGK-----------------------------------------------CGWKMFQK  129 (239)
Q Consensus        98 ~~~~~~~-~~~~~~~vlDvGGG~G~-----------------------------------------------~~gD~~~~  129 (239)
                      .+++.+. ..++..+|||||||+|.                                               +.||.+..
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            4455441 16778899999999997                                               34566553


Q ss_pred             cC-Cc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          130 IL-NG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       130 ~p-~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      .+ .+  |+|++...+++.++        .+.+.|+|||+|++.
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP  180 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence            33 33  99999999988765        356789999999984

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=3.5e-06  Score=68.88  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             HHHHHHhccccc----HHHHHhhccCCCCcceEEEeCCCCCC--------------------------------------
Q 045543           84 LNTAMLSHNSIV----MNRILDYYKGFEKIKQLVDVGGGCGK--------------------------------------  121 (239)
Q Consensus        84 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGGG~G~--------------------------------------  121 (239)
                      |...|...+...    +..++...+ ..+..+|||+|||+|.                                      
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~  154 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI  154 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence            445665544432    456778888 9999999999999998                                      


Q ss_pred             -----CccccccccCCcceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          122 -----CGWKMFQKILNGDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       122 -----~~gD~~~~~p~~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                           ..+|+...++.   ..+-.|+++.++..  .+|+++.++|||||+|++.-
T Consensus       155 ~~v~~~~~d~~~~~~~---~~~D~V~~d~p~p~--~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         155 ERVTIKVRDISEGFDE---KDVDALFLDVPDPW--NYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             GGEEEECCCGGGCCSC---CSEEEEEECCSCGG--GTHHHHHHHEEEEEEEEEEE
T ss_pred             cCcEEEeccccccccc---cceeeeEecCCCHH--HHHHHHHhhcCCCCEEEEEe
Confidence                 23333333332   22333456777764  78999999999999999864

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=8.8e-06  Score=63.79  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=33.7

Q ss_pred             Ccccccc---ccCCc--ceeeechhhhcCChhH------HHHHHHHHHhhCCCCceEEEE
Q 045543          122 CGWKMFQ---KILNG--DAILMKLILRNWDDEH------CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       122 ~~gD~~~---~~p~~--D~~~l~~vlH~~~d~~------~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +.+|...   .+|.+  |.+++......+....      ...+|+.+++.|+|||.|+|.
T Consensus        84 ~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1          84 LNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             ECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            5556543   25543  8887777665433332      247999999999999999885

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.76  E-value=7.9e-06  Score=65.01  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             HHHhhccCCCCcceEEEeCCCCCC-------------------------------------CccccccccCC-c--ceee
Q 045543           98 RILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQKILN-G--DAIL  137 (239)
Q Consensus        98 ~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~~~p~-~--D~~~  137 (239)
                      .+++.++ +.+..+|||||||+|.                                     +.+|.+...|+ +  |+|+
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Ii  139 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV  139 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHH
Confidence            4566777 8899999999999998                                     56676664553 3  9999


Q ss_pred             echhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          138 MKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       138 l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +...+++.++        .+.+.|+|||+|++.
T Consensus       140 v~~a~~~ip~--------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         140 VWATAPTLLC--------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             ESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             hhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence            9988887764        345779999999883

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=7e-06  Score=68.81  Aligned_cols=62  Identities=21%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             CcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC--cceeeechhhhc
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN--GDAILMKLILRN  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~--~D~~~l~~vlH~  144 (239)
                      +.++|||||||+|.                                        +.+|+.+ ++|.  .|+++...+.|.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            45799999999998                                        4566665 5664  399988777765


Q ss_pred             CC-hhHHHHHHHHHHhhCCCCceEEE
Q 045543          145 WD-DEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       145 ~~-d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      .. +.....++..+.+.|+|||+++-
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccchhHHHHHHHHHhccCCCeEEEe
Confidence            54 34456788889999999998863

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=6.4e-06  Score=68.75  Aligned_cols=62  Identities=21%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC--cceeeechhhhc
Q 045543          108 KIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN--GDAILMKLILRN  144 (239)
Q Consensus       108 ~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~--~D~~~l~~vlH~  144 (239)
                      +.++|||||||+|.                                        +.+|..+ +.|.  .|+++...+.|.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            45789999999999                                        4566665 5553  399988777766


Q ss_pred             CCh-hHHHHHHHHHHhhCCCCceEEE
Q 045543          145 WDD-EHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       145 ~~d-~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ... .....++..+.+.|+|||+++-
T Consensus       113 l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         113 LFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            543 3567899999999999999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1e-05  Score=67.87  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             CchHHHHHHHHHHhcccc----cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------
Q 045543           77 DSRFNEVLNTAMLSHNSI----VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------  121 (239)
Q Consensus        77 ~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------  121 (239)
                      .|.. +.|...|...+..    .+..|+...+ ..+..+|||+|||+|.                               
T Consensus        65 ~Pt~-~d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n  142 (324)
T d2b25a1          65 RPAL-EDYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN  142 (324)
T ss_dssp             CCCH-HHHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCH-HHHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHH
Confidence            3443 3466677665543    2567888888 9999999999999998                               


Q ss_pred             ----------------------Ccccccc---ccCC-c-ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEee
Q 045543          122 ----------------------CGWKMFQ---KILN-G-DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       122 ----------------------~~gD~~~---~~p~-~-D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                                            ..+|+-+   .++. . |.|++     |.++..  ..|.+++++|||||+|++.-+
T Consensus       143 ~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         143 YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             HHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEES
T ss_pred             HHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeC
Confidence                                  1122221   1222 2 77765     455443  579999999999999998643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2e-05  Score=65.31  Aligned_cols=64  Identities=22%  Similarity=0.100  Sum_probs=48.5

Q ss_pred             CCCcceEEEeCCCCCC----------------------------------------Ccccccc-ccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ-KILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~-~~p~--~D~~~l~~vl  142 (239)
                      ..+.++|||||||+|.                                        +.+|..+ +.|.  .|+|+...+.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            4456899999999999                                        4556655 4553  3999988888


Q ss_pred             hcCChh-HHHHHHHHHHhhCCCCceEEE
Q 045543          143 RNWDDE-HCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       143 H~~~d~-~~~~iL~~~~~aL~pgg~lli  169 (239)
                      |....+ ....++....+.|+|||+++-
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEec
Confidence            776544 455778888889999999874

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=4e-05  Score=50.09  Aligned_cols=54  Identities=7%  Similarity=0.013  Sum_probs=45.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecChhhH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAPVAK   61 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~~s~   61 (239)
                      .|.+.+++++  +|+|+.|||+++|+    ++..+.|+|..|+..   ....+++|.+++-.-
T Consensus         9 ~IL~~~a~~~--~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~   65 (75)
T d1mkma1           9 EILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI   65 (75)
T ss_dssp             HHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECCCCCEeecHHHH
Confidence            4677888765  79999999999999    999999999999998   333478899987653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00026  Score=57.65  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=67.1

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------------CccccccccCC-c-ceeeec----
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN-G-DAILMK----  139 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~-~-D~~~l~----  139 (239)
                      ....+|||+|||+|.                                         +.+|+|++++. . |+++..    
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            445789999999999                                         77899987774 3 988763    


Q ss_pred             ---------hhhhcCCh----------hHHHHHHHHHHhhCCCCceEEEEeeecCCCCCCChhhhhhhhhhHHHhhccCC
Q 045543          140 ---------LILRNWDD----------EHCLSLLKNCYEAIPGNGKIIIIDSTTVVIPEATPATREASSIDIIMLMQLSG  200 (239)
Q Consensus       140 ---------~vlH~~~d----------~~~~~iL~~~~~aL~pgg~lli~d~~~~~~~~~~~~~~~~~~~dl~ml~~~~~  200 (239)
                               .++.+-+.          +...+|++++.+.|+|||.+++ |.  ...                       
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Ei--g~~-----------------------  240 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EH--GWQ-----------------------  240 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-EC--CSS-----------------------
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EE--Cch-----------------------
Confidence                     22221110          3456899999999999998877 31  100                       


Q ss_pred             ccccChhhccHHHHHhhCCCceeeEEE-cCCceeEEEEE
Q 045543          201 EKERTKQEYYGMALTAKNGFKGVNYES-FVCNFYIMEFI  238 (239)
Q Consensus       201 g~~rt~~e~~~~~ll~~aGf~~~~~~~-~~~~~~vie~~  238 (239)
                          ..++.  .+++++.||..++++. ..+...+|.++
T Consensus       241 ----q~~~v--~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         241 ----QGEAV--RQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             ----CHHHH--HHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             ----HHHHH--HHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence                11344  7778999998877665 34555566554

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.41  E-value=0.00014  Score=56.74  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.1

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..+|+.+++.|+|||.|+|.
T Consensus       126 ~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         126 KTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEE
Confidence            57899999999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=5e-05  Score=59.81  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC----------------------------------------CccccccccCC-c--
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQKILN-G--  133 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~~~p~-~--  133 (239)
                      ..+++.++ ..+..+|||||+|+|.                                        +.||.++..|. +  
T Consensus        68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pf  146 (215)
T d1jg1a_          68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  146 (215)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhhc-cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcc
Confidence            45667777 8889999999999999                                        66777775553 3  


Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++...++..++.        +.+.|+|||++++.
T Consensus       147 D~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         147 DVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             eeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence            999999999877653        45679999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.12  E-value=0.00018  Score=56.84  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             HHHhhc--cCCCCcceEEEeCCCCCC----------------------------------------------------Cc
Q 045543           98 RILDYY--KGFEKIKQLVDVGGGCGK----------------------------------------------------CG  123 (239)
Q Consensus        98 ~~~~~~--~~~~~~~~vlDvGGG~G~----------------------------------------------------~~  123 (239)
                      .+++.+  + +.+..+|||||||+|.                                                    +.
T Consensus        69 ~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          69 FALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            445555  4 7788999999999996                                                    33


Q ss_pred             cccccccC-Cc--ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEE
Q 045543          124 WKMFQKIL-NG--DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       124 gD~~~~~p-~~--D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~  170 (239)
                      +|..+..| .+  |.|++...++..++        .+.+.|+|||++++.
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP  189 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence            56665333 23  99999999987765        356789999999884

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.96  E-value=0.007  Score=50.64  Aligned_cols=103  Identities=12%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             Ccccccc-ccCCc--ceeeechhhhcCCh-------------------------------hHHHHHHHHHHhhCCCCceE
Q 045543          122 CGWKMFQ-KILNG--DAILMKLILRNWDD-------------------------------EHCLSLLKNCYEAIPGNGKI  167 (239)
Q Consensus       122 ~~gD~~~-~~p~~--D~~~l~~vlH~~~d-------------------------------~~~~~iL~~~~~aL~pgg~l  167 (239)
                      ++|.|+. =+|..  ++++.+..||=++.                               ++-..+|+.=++-|.|||++
T Consensus       126 vpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m  205 (359)
T d1m6ex_         126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM  205 (359)
T ss_dssp             EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred             cCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            7788887 57764  99999999985441                               14456888889999999999


Q ss_pred             EEEeeecCCCCCCC------hhhhhhhhhhHHHhhccCC---------ccccChhhccHHHHHhhCC-CceeeEE
Q 045543          168 IIIDSTTVVIPEAT------PATREASSIDIIMLMQLSG---------EKERTKQEYYGMALTAKNG-FKGVNYE  226 (239)
Q Consensus       168 li~d~~~~~~~~~~------~~~~~~~~~dl~ml~~~~~---------g~~rt~~e~~~~~ll~~aG-f~~~~~~  226 (239)
                      ++.=.-.++.....      +......+.|+.--.....         --.+|.+|+  ++.+++.| |++.++.
T Consensus       206 vl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv--~~~ie~~gsF~i~~~e  278 (359)
T d1m6ex_         206 VLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEV--EAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHH--HHHHHHTTTBCCEEEE
T ss_pred             EEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHH--HHHhccCCCeeeeeeE
Confidence            99766555432111      0000112233221111100         123588999  99999877 6665543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.0011  Score=53.25  Aligned_cols=63  Identities=14%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------CccccccccCC--cceeeechhh
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKILN--GDAILMKLIL  142 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~p~--~D~~~l~~vl  142 (239)
                      ..+..+|||+|||+|.                                         +.+|.++-.++  .|.|++..- 
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p-  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC-
Confidence            4567899999999999                                         56787763333  488776421 


Q ss_pred             hcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          143 RNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                           ..+...|..+.+.|+|||.|.+++.+.
T Consensus       184 -----~~~~~~l~~a~~~l~~gG~lh~~~~~~  210 (260)
T d2frna1         184 -----VRTHEFIPKALSIAKDGAIIHYHNTVP  210 (260)
T ss_dssp             -----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             -----CchHHHHHHHHhhcCCCCEEEEEeccc
Confidence                 223467888899999999998887653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.90  E-value=0.0096  Score=43.37  Aligned_cols=59  Identities=10%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             CcceEEEeCCCCCC-----------------------------------------Ccccccc--ccCC--cceeeechhh
Q 045543          108 KIKQLVDVGGGCGK-----------------------------------------CGWKMFQ--KILN--GDAILMKLIL  142 (239)
Q Consensus       108 ~~~~vlDvGGG~G~-----------------------------------------~~gD~~~--~~p~--~D~~~l~~vl  142 (239)
                      +..+|||+|||+|.                                         +.+|.++  +.+.  .|++++-== 
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP-   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP-   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence            46899999999999                                         5566654  2222  388876311 


Q ss_pred             hcCChhHHHHHHHHHHh--hCCCCceEEE
Q 045543          143 RNWDDEHCLSLLKNCYE--AIPGNGKIII  169 (239)
Q Consensus       143 H~~~d~~~~~iL~~~~~--aL~pgg~lli  169 (239)
                        |.......+|..+.+  .|+|+|.+++
T Consensus        93 --y~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          93 --YAKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             --SHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             --hccchHHHHHHHHHHCCCcCCCeEEEE
Confidence              123444566676654  4889998765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.69  E-value=0.0068  Score=49.96  Aligned_cols=66  Identities=11%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             CCcceEEEeCCCCCC-----------------------------------------Cccccccc---cC---Cc-ceeee
Q 045543          107 EKIKQLVDVGGGCGK-----------------------------------------CGWKMFQK---IL---NG-DAILM  138 (239)
Q Consensus       107 ~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~---~p---~~-D~~~l  138 (239)
                      ++..+|||++||+|.                                         +.+|.|+.   ++   .. |+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            567899999999999                                         45666652   22   12 88886


Q ss_pred             ---chhhhcCChh----HHHHHHHHHHhhCCCCceEEEEee
Q 045543          139 ---KLILRNWDDE----HCLSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       139 ---~~vlH~~~d~----~~~~iL~~~~~aL~pgg~lli~d~  172 (239)
                         ....+.-...    .-.++++.+.+.|+|||+|+.+..
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence               2222222212    224689999999999999988753

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.0099  Score=36.96  Aligned_cols=50  Identities=14%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEecCh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRLAP   58 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~t~   58 (239)
                      |.+.|.++.  +++|++|||+.+++    +.+.+.|=+..|...   .....+.|.+.+
T Consensus        12 Il~~L~~~~--~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~~gGY~L~~   64 (65)
T d1j5ya1          12 IVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVATPRGYVLAG   64 (65)
T ss_dssp             HHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred             HHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEeCCCEEeCC
Confidence            556676542  68999999999999    999999999998665   223446787754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.38  E-value=0.0069  Score=46.93  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=23.3

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeec
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      |++++-   |+.+.......+.++.+.|+|||.| |+|.++
T Consensus       134 D~ifiD---~~~~~~~~~~~l~~~~~lLkpGGvI-v~Ddvl  170 (214)
T d2cl5a1         134 DMVFLD---HWKDRYLPDTLLLEKCGLLRKGTVL-LADNVI  170 (214)
T ss_dssp             EEEEEC---SCGGGHHHHHHHHHHTTCEEEEEEE-EESCCC
T ss_pred             ceeeec---ccccccccHHHHHHHhCccCCCcEE-EEeCcC
Confidence            777765   3333333344577788889999954 555544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.015  Score=44.29  Aligned_cols=81  Identities=21%  Similarity=0.310  Sum_probs=52.7

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC----------------------------------------Ccccccc------
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK----------------------------------------CGWKMFQ------  128 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~----------------------------------------~~gD~~~------  128 (239)
                      ...++++.+. ..+...+||++||+|.                                        +.++|-+      
T Consensus        11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence            3567888887 7788999999999998                                        3333322      


Q ss_pred             ccC--Ccceeeec-----hhhhcC--ChhHHHHHHHHHHhhCCCCceEEEEeeecCC
Q 045543          129 KIL--NGDAILMK-----LILRNW--DDEHCLSLLKNCYEAIPGNGKIIIIDSTTVV  176 (239)
Q Consensus       129 ~~p--~~D~~~l~-----~vlH~~--~d~~~~~iL~~~~~aL~pgg~lli~d~~~~~  176 (239)
                      .++  .-|.|++-     .-|-+-  .-......|..+.+.|+|||+++|+.+...+
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~E  146 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLE  146 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHH
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHH
Confidence            122  12666542     111100  1223458899999999999999998875433

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=94.18  E-value=0.057  Score=42.46  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=44.6

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCCc-ce
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      .+..+++..+ ..+..+||+||+|.|.                                     +.+|+.+ +++.. +.
T Consensus        17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~   95 (245)
T d1yuba_          17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceee
Confidence            3567888887 8888999999999999                                     6778877 66654 66


Q ss_pred             eeechhhhcCChhHHHHHH
Q 045543          136 ILMKLILRNWDDEHCLSLL  154 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL  154 (239)
                      .++++.=.+.+-+-..+++
T Consensus        96 ~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          96 KIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             EEEEECCSSSCHHHHHHHH
T ss_pred             eEeeeeehhhhHHHHHHHh
Confidence            7778887777765444433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.00  E-value=0.1  Score=41.07  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             HHHHhhccCCCCcceEEEeCCCCCC------------------Cc--------------ccccc--------ccC-C-cc
Q 045543           97 NRILDYYKGFEKIKQLVDVGGGCGK------------------CG--------------WKMFQ--------KIL-N-GD  134 (239)
Q Consensus        97 ~~~~~~~~~~~~~~~vlDvGGG~G~------------------~~--------------gD~~~--------~~p-~-~D  134 (239)
                      ..+.+.+- +....+|||+|||+|.                  ++              +|+++        ..+ . .|
T Consensus        56 ~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          56 RWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            34555554 7777899999999999                  11              12211        122 2 37


Q ss_pred             eeeechhhhc--CC--hhHHHHHHHHHHhhCCCCceEEE
Q 045543          135 AILMKLILRN--WD--DEHCLSLLKNCYEAIPGNGKIII  169 (239)
Q Consensus       135 ~~~l~~vlH~--~~--d~~~~~iL~~~~~aL~pgg~lli  169 (239)
                      ++++--.=+.  +.  .+...++|.-+.+-|+|||-+++
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            7776533211  11  13345788888899999998766

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.90  E-value=0.036  Score=42.04  Aligned_cols=20  Identities=10%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ..++.++.+.|+|||++.++
T Consensus       124 ~~Fi~~al~~lk~~G~~~~I  143 (223)
T d2ih2a1         124 GAFLEKAVRLLKPGGVLVFV  143 (223)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCCceEEE
Confidence            46678899999999998876

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=93.55  E-value=0.1  Score=40.67  Aligned_cols=60  Identities=12%  Similarity=0.261  Sum_probs=42.1

Q ss_pred             cHHHHHhhccCCCCcceEEEeCCCCCC-------------------------------------Ccccccc-ccCCc-ce
Q 045543           95 VMNRILDYYKGFEKIKQLVDVGGGCGK-------------------------------------CGWKMFQ-KILNG-DA  135 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vlDvGGG~G~-------------------------------------~~gD~~~-~~p~~-D~  135 (239)
                      .+..+++..+ ..+..+||+||+|.|.                                     +.+|+.+ ++|+. ..
T Consensus         9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~   87 (235)
T d1qama_           9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY   87 (235)
T ss_dssp             HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence            3567777777 8889999999999999                                     6788887 66654 55


Q ss_pred             eeechhhhcCChhHHHHHHHHHHh
Q 045543          136 ILMKLILRNWDDEHCLSLLKNCYE  159 (239)
Q Consensus       136 ~~l~~vlH~~~d~~~~~iL~~~~~  159 (239)
                      .+.+|+    |-.-...||.++..
T Consensus        88 ~vv~NL----PYnIss~il~~ll~  107 (235)
T d1qama_          88 KIFGNI----PYNISTDIIRKIVF  107 (235)
T ss_dssp             EEEEEC----CGGGHHHHHHHHHH
T ss_pred             eeeeee----hhhhhHHHHHHHHh
Confidence            455554    43444456666643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=92.94  E-value=0.016  Score=47.53  Aligned_cols=22  Identities=5%  Similarity=0.039  Sum_probs=18.8

Q ss_pred             HHHHHHHHhhCCCCceEEEEee
Q 045543          151 LSLLKNCYEAIPGNGKIIIIDS  172 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~d~  172 (239)
                      ..|++.+.+.|+|||.|+....
T Consensus       241 ~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         241 KEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEEEeC
Confidence            4789999999999999887644

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.87  E-value=0.03  Score=37.46  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=42.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCCC---CeEecChhhHHHH
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~~---~~y~~t~~s~~l~   64 (239)
                      .|...|...   ++.|+.|||+.+++    .+..+.+.|+.|...  .    ...+   -.|.+|+.++...
T Consensus        20 ~IL~~L~~~---~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~   84 (100)
T d1ub9a_          20 GIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA   84 (100)
T ss_dssp             HHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHhccC---CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence            356677654   68999999999999    999999999999886  1    1112   2489999886543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.81  E-value=0.017  Score=47.27  Aligned_cols=20  Identities=5%  Similarity=0.086  Sum_probs=17.2

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|++.|+|||.+++.
T Consensus       175 ~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         175 VEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             HHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCceEEEe
Confidence            57899999999999987764

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=92.34  E-value=0.043  Score=34.41  Aligned_cols=37  Identities=11%  Similarity=0.347  Sum_probs=33.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|..+   +++|..|||+.+|+    ++..+.++++.|...
T Consensus        11 Il~~l~~~---g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~   47 (71)
T d1z05a1          11 VYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDA   47 (71)
T ss_dssp             HHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            56778775   69999999999999    999999999999886

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.033  Score=43.11  Aligned_cols=37  Identities=16%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeeecC
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDSTTV  175 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~~~  175 (239)
                      |++++-     -+.+.-...+..+.+-|+|||.|++-+....
T Consensus       137 D~ifiD-----~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~  173 (219)
T d2avda1         137 DVAVVD-----ADKENCSAYYERCLQLLRPGGILAVLRVLWR  173 (219)
T ss_dssp             EEEEEC-----SCSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             cEEEEe-----CCHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            777664     3334456778899999999998777655443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.19  E-value=0.02  Score=46.93  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhhCCCCceEEEEe
Q 045543          150 CLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      -.++++.+.+.|+|||.|++.-
T Consensus       242 ~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         242 YHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEe
Confidence            3579999999999999888754

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.84  E-value=0.07  Score=32.58  Aligned_cols=37  Identities=11%  Similarity=0.224  Sum_probs=33.2

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|.+    +|+|-.|||+.+|+    ....+.++++-|...
T Consensus         3 ~Il~~i~~----~pisr~eLa~~~gl----s~~TVs~~v~~L~~~   39 (62)
T d2hoea1           3 RILKRIMK----SPVSRVELAEELGL----TKTTVGEIAKIFLEK   39 (62)
T ss_dssp             CSHHHHHH----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            36778887    69999999999999    999999999999885

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=91.73  E-value=0.047  Score=38.86  Aligned_cols=49  Identities=8%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC----CCCCCCeEecChh
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAPV   59 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~~   59 (239)
                      .|+.+ ++.+.|.++||+.+++    ++..++++|+.|...    ...+.|.|.+..-
T Consensus        15 ~la~~-~~~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~   67 (138)
T d1ylfa1          15 ILKNN-PSSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKD   67 (138)
T ss_dssp             HHHHS-CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---CCEEESSC
T ss_pred             HHHhC-CCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeecCCCCceecCC
Confidence            45543 2368999999999999    999999999999887    2233466777643

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=91.71  E-value=0.16  Score=32.03  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC-------CCCCCCeEecChhhHHHH
Q 045543           12 PRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS-------AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus        12 ~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~-------~~~~~~~y~~t~~s~~l~   64 (239)
                      ++++-|++.|+++.++    +=+.|+|.|-.|.+.       .+...|.=++|+.++.++
T Consensus        21 ~g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          21 GATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   76 (81)
T ss_dssp             TCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence            4589999999999999    999999999999875       456677888999988775

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.12  Score=32.21  Aligned_cols=52  Identities=8%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhC-CCCCCCChhhHHHHHHHhccC----CCCCCCeEecCh
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQM-PSHNPNAAVMLDRVLRRSLSS----AGDDRRLQRLAP   58 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~-g~~~~~~~~~l~rlL~~L~~~----~~~~~~~y~~t~   58 (239)
                      ||+.|...+.+.++++.||++++ ++    +...+...++.|...    ...++..|..|.
T Consensus        11 V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsTiDddHfkstd   67 (69)
T d1dpua_          11 VLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYSTVDDDHFKSTD   67 (69)
T ss_dssp             HHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEECSSTTEEEESS
T ss_pred             HHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecccccchhcccC
Confidence            67777765555789999999999 79    999999999999987    456678887663

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=91.50  E-value=0.074  Score=42.45  Aligned_cols=14  Identities=43%  Similarity=0.814  Sum_probs=12.2

Q ss_pred             CcceEEEeCCCCCC
Q 045543          108 KIKQLVDVGGGCGK  121 (239)
Q Consensus       108 ~~~~vlDvGGG~G~  121 (239)
                      +..+++|+|||+|.
T Consensus       110 ~~~~vld~g~GsG~  123 (271)
T d1nv8a_         110 GIKTVADIGTGSGA  123 (271)
T ss_dssp             TCCEEEEESCTTSH
T ss_pred             cccEEEEeeeeeeh
Confidence            45689999999998

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.064  Score=32.86  Aligned_cols=48  Identities=6%  Similarity=0.077  Sum_probs=36.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---C-CCCCCeEecC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---A-GDDRRLQRLA   57 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~-~~~~~~y~~t   57 (239)
                      |...|.+.   +.+|.+|||+++|+    +...+.+-+..|...   . ...+..|.+.
T Consensus        10 iL~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~~~g~GY~L~   61 (63)
T d1biaa1          10 LIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTVPGKGYSLP   61 (63)
T ss_dssp             HHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred             HHHHHHHC---CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEEeCCCeEEeC
Confidence            45667652   68999999999999    999999999999886   1 1223358764

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.48  E-value=0.092  Score=36.66  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..   ++.|.++||+.+++    ++..++++|+.|...
T Consensus        12 ~la~~---~~~ss~~IA~~~~~----~~~~v~kIl~~L~~a   45 (127)
T d1xd7a_          12 LISMD---EKTSSEIIADSVNT----NPVVVRRMISLLKKA   45 (127)
T ss_dssp             HHHTC---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHT
T ss_pred             HHhcC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHh
Confidence            45543   68999999999999    999999999999886

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=91.41  E-value=0.12  Score=31.65  Aligned_cols=46  Identities=9%  Similarity=0.029  Sum_probs=35.1

Q ss_pred             hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEe
Q 045543            5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQR   55 (239)
Q Consensus         5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~   55 (239)
                      +.+.++| -.|-++.|||+.+|+    ++..++.+|+.|+..   ....++.|-
T Consensus        14 ~~~~~~g-~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI~~d~yf   62 (64)
T d1lvaa3          14 DKYRVSR-WQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKINDEFYW   62 (64)
T ss_dssp             HHHHHHT-TSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred             HHHHHcC-CCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEecccccc
Confidence            3444433 268999999999999    999999999999987   334455554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.19  E-value=0.054  Score=42.47  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      |+++.+.+-   +   ...+++-+...+++||+++..-
T Consensus       143 D~v~sRAva---~---l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         143 DIVTARAVA---R---LSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEEEEECCS---C---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eEEEEhhhh---C---HHHHHHHHhhhcccCCEEEEEC
Confidence            888888663   2   3478999999999999988754

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.11  Score=32.37  Aligned_cols=37  Identities=11%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|..+   +++|-.|||+.+|+    ++..+.++++.|...
T Consensus        10 Il~~i~~~---g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~   46 (70)
T d1z6ra1          10 VYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEA   46 (70)
T ss_dssp             HHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            56777775   69999999999999    999999999999886

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=90.28  E-value=0.088  Score=42.71  Aligned_cols=19  Identities=5%  Similarity=0.183  Sum_probs=16.6

Q ss_pred             HHHHHHHhhCCCCceEEEE
Q 045543          152 SLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       152 ~iL~~~~~aL~pgg~lli~  170 (239)
                      .++.++.+.|+|||++.++
T Consensus       224 ~Fi~~~~~~Lk~~G~~~~I  242 (328)
T d2f8la1         224 LFIEQGMRYTKPGGYLFFL  242 (328)
T ss_dssp             HHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCceEEE
Confidence            4799999999999998775

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.50  E-value=0.3  Score=34.45  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C-------CCCCCeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A-------GDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~-------~~~~~~y~~t~~s~~l~   64 (239)
                      ...|...+  |++|..+||+.+++    ++..+.++++-|...  .       ....-.+.+|+.++.+.
T Consensus        40 L~~L~~~~--g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          40 LGAIDRLG--GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHTT--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence            34555443  68999999999999    999999999999986  1       11223578999998765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.15  Score=38.89  Aligned_cols=33  Identities=9%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             cceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEe
Q 045543          133 GDAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIID  171 (239)
Q Consensus       133 ~D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d  171 (239)
                      .|+++.+.+-    +  ...+++-+...++++|+++..-
T Consensus       133 fD~V~sRA~~----~--~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         133 FDGVISRAFA----S--LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             EEEEECSCSS----S--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cceehhhhhc----C--HHHHHHHHHHhcCCCcEEEEEC
Confidence            4888777663    2  2478888889999999988764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.11  Score=38.68  Aligned_cols=13  Identities=31%  Similarity=0.302  Sum_probs=11.8

Q ss_pred             cceEEEeCCCCCC
Q 045543          109 IKQLVDVGGGCGK  121 (239)
Q Consensus       109 ~~~vlDvGGG~G~  121 (239)
                      ..++||++||+|.
T Consensus        44 ~~~vLDlfaGsG~   56 (183)
T d2fpoa1          44 DAQCLDCFAGSGA   56 (183)
T ss_dssp             TCEEEETTCTTCH
T ss_pred             hhhhhhhhccccc
Confidence            3689999999999

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.01  E-value=0.093  Score=42.37  Aligned_cols=20  Identities=20%  Similarity=0.488  Sum_probs=17.3

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|++.|+|||.+++.
T Consensus       184 ~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         184 EEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhhcCCCcEEEEe
Confidence            57899999999999987664

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.81  E-value=0.1  Score=39.54  Aligned_cols=15  Identities=27%  Similarity=0.514  Sum_probs=13.0

Q ss_pred             CCCcceEEEeCCCCCC
Q 045543          106 FEKIKQLVDVGGGCGK  121 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~  121 (239)
                      ++ .++|||+|||+|.
T Consensus        47 l~-Gk~VLDlGcGtG~   61 (197)
T d1ne2a_          47 IG-GRSVIDAGTGNGI   61 (197)
T ss_dssp             SB-TSEEEEETCTTCH
T ss_pred             CC-CCEEEEeCCCCcH
Confidence            44 4899999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=88.79  E-value=0.14  Score=37.58  Aligned_cols=16  Identities=19%  Similarity=0.422  Sum_probs=13.9

Q ss_pred             CCCcceEEEeCCCCCC
Q 045543          106 FEKIKQLVDVGGGCGK  121 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~  121 (239)
                      .....+|||+|||+|.
T Consensus        39 ~~~g~~vLDl~~G~G~   54 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGA   54 (171)
T ss_dssp             CTTCCEEEEETCSSCH
T ss_pred             ccCCCeEEEeccccch
Confidence            4566799999999999

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.53  E-value=0.13  Score=41.81  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             CCCcceEEEeCCCCCC-----------------------------------------Ccccccccc------CC-cceee
Q 045543          106 FEKIKQLVDVGGGCGK-----------------------------------------CGWKMFQKI------LN-GDAIL  137 (239)
Q Consensus       106 ~~~~~~vlDvGGG~G~-----------------------------------------~~gD~~~~~------p~-~D~~~  137 (239)
                      ..+..+|||+.||+|.                                         +.+|.|+-+      .. -|+|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4567899999999999                                         456666421      12 28888


Q ss_pred             ec---hhh---h-cCC-hhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          138 MK---LIL---R-NWD-DEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       138 l~---~vl---H-~~~-d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      +-   ..-   + .|. .+....+++.+.+.|+|||.+++.-..
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            71   110   0 122 233456788899999999987776543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.42  E-value=0.14  Score=41.56  Aligned_cols=21  Identities=14%  Similarity=0.066  Sum_probs=15.6

Q ss_pred             HHHHHHHHHhhCCCCceEEEE
Q 045543          150 CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~  170 (239)
                      ....++.|++.|+|||.++..
T Consensus       199 t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         199 GQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             ---HHHHHHHHEEEEEEEEEE
T ss_pred             hHHHHHHHHhhcCCCcEEEEe
Confidence            356788999999999987765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.12  E-value=0.091  Score=41.92  Aligned_cols=20  Identities=15%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|++.|+|||.+++.
T Consensus       170 ~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         170 EEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhhHhhcCCCceEEEe
Confidence            46799999999999977664

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=88.04  E-value=0.82  Score=36.47  Aligned_cols=39  Identities=13%  Similarity=0.057  Sum_probs=33.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      =+++.-.+++.++.+++.++|+.+++...||++|++ |..
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~-d~~  206 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETS  206 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE-Eec
Confidence            477778899999999999999999999999998755 544

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=87.89  E-value=0.4  Score=33.44  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=43.4

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCC---CeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~---~~y~~t~~s~~l~   64 (239)
                      +...|..+   ++.|+.+||+.+++    ++..+.++++.|...      ..+.+   -...+|+.++.+.
T Consensus        37 iL~~l~~~---~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  100 (140)
T d2etha1          37 AFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence            34566665   58999999999999    999999999999997      11222   3578999998776

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.74  E-value=0.22  Score=33.65  Aligned_cols=37  Identities=14%  Similarity=0.309  Sum_probs=32.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+-.|.+.   ++.|+.|||+.+|+    +...+.++|+-|...
T Consensus        25 v~~~L~~~---g~~t~~eia~~~~i----~~~~v~~~l~~L~~~   61 (109)
T d1sfxa_          25 IYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKR   61 (109)
T ss_dssp             HHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHhc---CCCCHHHHHHHhCC----CcchHHHHHHHHHhC
Confidence            44556555   69999999999999    999999999999987

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=87.49  E-value=0.24  Score=34.40  Aligned_cols=56  Identities=9%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCC---CCeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~---~~~y~~t~~s~~l~   64 (239)
                      ...|..++ ++++|..|||+.+++    +...+.++++.|...      ..+.   .-.+.+|+.++.+.
T Consensus        35 L~~l~~~~-~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~   99 (135)
T d3broa1          35 IDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE   99 (135)
T ss_dssp             HHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHcC-CCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence            34455532 368999999999999    999999999999886      1122   23588999887655

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=0.14  Score=41.00  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=21.0

Q ss_pred             ceeeechhhhcCChhH---HHHHHHHHHhhCCCCceEEEE
Q 045543          134 DAILMKLILRNWDDEH---CLSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~---~~~iL~~~~~aL~pgg~lli~  170 (239)
                      |+|++- ..+......   ....++.|++.|+|||.+++.
T Consensus       153 DvIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         153 DVIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            887764 232222111   225689999999999987765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=87.44  E-value=0.12  Score=41.23  Aligned_cols=20  Identities=10%  Similarity=0.170  Sum_probs=16.5

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      +..++.|++.|+|||.++..
T Consensus       169 ~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         169 KGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             THHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhhcCCCceEEEe
Confidence            47799999999999977654

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.34  E-value=0.18  Score=32.63  Aligned_cols=47  Identities=11%  Similarity=0.122  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCC---CCCeEecChhhHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGD---DRRLQRLAPVAKYVL   64 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~---~~~~y~~t~~s~~l~   64 (239)
                      +++|..|||+.+++    ++..+.++|+-|...   ..+   ..-.+.+|+.++.++
T Consensus        20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL   72 (85)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHH
Confidence            68999999999999    999999999999887   111   223367888887654

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.34  Score=28.09  Aligned_cols=38  Identities=11%  Similarity=0.201  Sum_probs=30.1

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .+.|.++- ..++|+++||+.+|+    +++.+.|+.+.....
T Consensus         9 ~~yI~~~~-~~~~tl~~lA~~~~~----s~~~l~r~Fk~~~g~   46 (54)
T d1bl0a1           9 LDWIEDNL-ESPLSLEKVSERSGY----SKWHLQRMFKKETGH   46 (54)
T ss_dssp             HHHHHTTT-TSCCCCHHHHHHSSS----CHHHHHHHHHHHHSS
T ss_pred             HHHHHhcc-CCCCCHHHHHHHHCc----CHHHHHHHHHHHHCc
Confidence            34555532 369999999999999    999999999877654

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.17  E-value=0.13  Score=34.12  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|.+    ++.++.|||+.+|+    +...+.+-|+.|...
T Consensus        22 ~Il~~L~~----~~~~v~el~~~l~~----s~~~vS~HL~~L~~~   58 (94)
T d1r1ua_          22 RIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSV   58 (94)
T ss_dssp             HHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHC
Confidence            46677777    79999999999999    999999999999886

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=87.17  E-value=0.14  Score=34.55  Aligned_cols=38  Identities=11%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|..++  +|+|+.|||+.+++    ++..+.++|+-|...
T Consensus        26 iL~~L~~~~--~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~   63 (109)
T d2d1ha1          26 VLLKMVEIE--KPITSEELADIFKL----SKTTVENSLKKLIEL   63 (109)
T ss_dssp             HHHHHHHHC--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHCc----cHhHHHHHHHHHHHC
Confidence            444554433  78999999999999    999999999999987

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.17  E-value=0.24  Score=39.67  Aligned_cols=20  Identities=10%  Similarity=0.175  Sum_probs=17.5

Q ss_pred             HHHHHHHHhhCCCCceEEEE
Q 045543          151 LSLLKNCYEAIPGNGKIIII  170 (239)
Q Consensus       151 ~~iL~~~~~aL~pgg~lli~  170 (239)
                      ...++.|++.|+|||.+++.
T Consensus       175 ~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         175 KPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEe
Confidence            57899999999999988775

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.94  E-value=0.21  Score=37.05  Aligned_cols=36  Identities=0%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |+..|.+    +|.|+.|||+.+|+    ++..+.+-|+.|...
T Consensus        24 Il~~L~~----~~~s~~ela~~lg~----s~~~v~~hl~~L~~~   59 (190)
T d1ulya_          24 ILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEA   59 (190)
T ss_dssp             HHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            5667765    79999999999999    999999999999776

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.82  E-value=0.38  Score=31.45  Aligned_cols=56  Identities=9%  Similarity=0.080  Sum_probs=45.2

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--CCCCCCeEecChhhHHHH
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--AGDDRRLQRLAPVAKYVL   64 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~~~~~~~y~~t~~s~~l~   64 (239)
                      ++|.|....  ++.+...|...+++    +.+.+.+.|..|...  .+..++.|..|+-++.|+
T Consensus         8 i~DIL~~~~--~g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~~~~Y~iT~kG~~~L   65 (90)
T d1r7ja_           8 IQAILEACK--SGSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELL   65 (90)
T ss_dssp             HHHHHHHHT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred             HHHHHHHHh--CCCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeecCCEEEECccHHHHH
Confidence            345555321  34578999999999    999999999999998  456678999999998876

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=85.74  E-value=0.17  Score=39.09  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=25.5

Q ss_pred             ceeeechhhhcCChhHHHHHHHHHHhhCCCCceEEEEeee
Q 045543          134 DAILMKLILRNWDDEHCLSLLKNCYEAIPGNGKIIIIDST  173 (239)
Q Consensus       134 D~~~l~~vlH~~~d~~~~~iL~~~~~aL~pgg~lli~d~~  173 (239)
                      |++++-     -+.+.....++.+.+-|+|||.|++-+.+
T Consensus       138 D~iFiD-----a~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         138 DFIFVD-----ADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             SEEEEC-----SCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eEEEec-----cchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            887764     33345678899999999999977665443

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.26  Score=29.44  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=28.6

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      ...|++ |  .|.|.+.||..+|.    ..+.+...|..+.+.
T Consensus         8 Lr~LA~-G--~PVs~~~LA~alg~----~~~eV~~aL~~~p~t   43 (60)
T d1s6la1           8 LRELAK-G--RPVSRTTLAGILDW----PAERVAAVLEQATST   43 (60)
T ss_dssp             HHHHHT-T--CCBCHHHHHHHHTC----CHHHHHHHHTTCCSS
T ss_pred             HHHHhC-C--CCcCHHHHHHHhCC----CHHHHHHHHHhCCCc
Confidence            345666 3  89999999999999    888887777766665

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=84.91  E-value=0.17  Score=33.71  Aligned_cols=36  Identities=11%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...|.+    ++.|+.|||+.+|+    +...+.+-|+.|...
T Consensus        28 Il~~L~~----~~~~v~ela~~l~i----s~stvS~HL~~L~~a   63 (98)
T d1r1ta_          28 LLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNL   63 (98)
T ss_dssp             HHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            5556665    79999999999999    999999999999876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.51  E-value=0.27  Score=36.98  Aligned_cols=13  Identities=38%  Similarity=0.608  Sum_probs=11.9

Q ss_pred             cceEEEeCCCCCC
Q 045543          109 IKQLVDVGGGCGK  121 (239)
Q Consensus       109 ~~~vlDvGGG~G~  121 (239)
                      ..+|||+|||+|.
T Consensus        47 g~~vLDlg~GtG~   59 (201)
T d1wy7a1          47 GKVVADLGAGTGV   59 (201)
T ss_dssp             TCEEEEETCTTCH
T ss_pred             CCEEEECcCcchH
Confidence            4799999999998

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=84.47  E-value=0.33  Score=33.93  Aligned_cols=53  Identities=8%  Similarity=0.060  Sum_probs=41.8

Q ss_pred             hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC--C----CCC---CCeEecChhhHHHH
Q 045543            5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS--A----GDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~--~----~~~---~~~y~~t~~s~~l~   64 (239)
                      ..|...   ++.|+.+||+.+++    ++..+.++++-|...  .    .+.   .-.+.+|+.++.+.
T Consensus        37 ~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~   98 (139)
T d2a61a1          37 QKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI   98 (139)
T ss_dssp             HHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHc---CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHH
Confidence            345554   58999999999999    999999999999886  1    112   34578999998876

>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: gamma,delta resolvase (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=0.51  Score=26.25  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             CCCCHHHHHHhCCCCCCCChhhHHHHHH
Q 045543           14 AKLSAAEIEAQMPSHNPNAAVMLDRVLR   41 (239)
Q Consensus        14 ~~~t~~eLA~~~g~~~~~~~~~l~rlL~   41 (239)
                      ..+.+.+||+++|+    ....++|+|.
T Consensus        17 ~G~gat~IAk~lgI----~R~SVYR~L~   40 (43)
T d1gdta1          17 QGLGASHISKTMNI----ARSTVYKVIN   40 (43)
T ss_dssp             TTCCHHHHHHHHTC----CHHHHHHHHH
T ss_pred             cCCCHHHHHHHHCC----CHHHHHHHHh
Confidence            58999999999999    9999999985

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.10  E-value=0.24  Score=28.88  Aligned_cols=48  Identities=10%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC---CCCCCCeEec
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS---AGDDRRLQRL   56 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~---~~~~~~~y~~   56 (239)
                      |...|.++|  +|.-+.+|++++++    +...+.++|..|-..   .-.+++.|++
T Consensus         6 ILQVL~dag--spvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~~patW~l   56 (57)
T d1j75a_           6 ILQVLSDDG--GPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPEPATWSI   56 (57)
T ss_dssp             HHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred             HHHHHHhcC--CchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccCCCccccC
Confidence            567788877  89999999999999    888999999888654   1233455543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.90  E-value=0.46  Score=38.29  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhhCCCCceEEEEeeec
Q 045543          150 CLSLLKNCYEAIPGNGKIIIIDSTT  174 (239)
Q Consensus       150 ~~~iL~~~~~aL~pgg~lli~d~~~  174 (239)
                      -.+||+++.+.++|||+|+-.-.-+
T Consensus       223 Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         223 QMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHhhhheeCCCcEEEEeeccC
Confidence            4578999999999999887766533

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.08  E-value=1.2  Score=30.98  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=40.8

Q ss_pred             hHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCC---CCeEecChhhHHHH
Q 045543            5 EIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus         5 d~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~---~~~y~~t~~s~~l~   64 (239)
                      ..|...   +++|..+||+.+++    +...+.++++.|+..      ..+.   .-.+.+|+.++.+.
T Consensus        43 ~~l~~~---~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~  104 (141)
T d1lnwa_          43 KLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  104 (141)
T ss_dssp             HHHHSS---TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred             HHHHHC---CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence            345553   47999999999999    999999999999987      1122   23468999987765

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.05  E-value=0.72  Score=31.94  Aligned_cols=54  Identities=7%  Similarity=0.136  Sum_probs=42.0

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCC---CeEecChhhHHHH
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~---~~y~~t~~s~~l~   64 (239)
                      ...|...   ++.|..+||+.+++    ++..+.++++-|...      ..+.+   -...+|+.++.+.
T Consensus        40 L~~i~~~---~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          40 LTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHcC---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHH
Confidence            3456554   58999999999999    999999999999886      11222   2468899998876

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.92  E-value=0.35  Score=34.12  Aligned_cols=37  Identities=11%  Similarity=0.162  Sum_probs=31.3

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      +-.|..++  +|+|+.|||+.+|+    ++..+.+.++.|...
T Consensus        32 ~~~L~~~~--~plt~~ela~~l~v----sk~~vs~~l~~L~~~   68 (151)
T d1ku9a_          32 YAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEEL   68 (151)
T ss_dssp             HHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHhCC--CCcCHHHHHHHhCC----CcchHHHHHHHHHHC
Confidence            44454433  78999999999999    999999999999996

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.85  E-value=0.67  Score=27.61  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |...|.++   +.+|..|||+++|+    ++..+.+=++.|...
T Consensus         8 Il~~L~~n---~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~   44 (60)
T d1i1ga1           8 ILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEK   44 (60)
T ss_dssp             HHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            45667774   68999999999999    999888877777653

>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: Rob transcription factor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.56  E-value=0.58  Score=27.04  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=29.1

Q ss_pred             chHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhcc
Q 045543            4 FEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLS   45 (239)
Q Consensus         4 fd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~   45 (239)
                      .+.|.++ ..+++|+++||+.+++    ++..+.|+.+.-..
T Consensus         9 ~~yi~~~-~~~~itl~~lA~~~~~----S~~~l~r~Fk~~~g   45 (54)
T d1d5ya1           9 LIWLEGH-LDQPLSLDNVAAKAGY----SKWHLQRMFKDVTG   45 (54)
T ss_dssp             HHHHHTT-SSSSCCCHHHHTTTSS----CHHHHHHHHHHHHS
T ss_pred             HHHHHHc-cCCCCCHHHHHHHHCc----CHHHHHHHHHHHHC
Confidence            3455553 2379999999999999    99999999876554

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.54  E-value=0.47  Score=30.79  Aligned_cols=39  Identities=18%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|++.|-+.+  +.+|=++||+++|+    ....++++|..|...
T Consensus        22 ~v~~~L~~~~--~evtDe~iA~~tgi----~in~VRk~Ly~L~~~   60 (88)
T d1q1ha_          22 DVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQ   60 (88)
T ss_dssp             HHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc--CcCCHHHHHHHhCC----cHHHHHHHHHHHHhC
Confidence            3666665433  57999999999999    999999999998765

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.48  E-value=1.1  Score=30.82  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCCC---CeEecChhhHHHH
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDDR---RLQRLAPVAKYVL   64 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~~---~~y~~t~~s~~l~   64 (239)
                      .|..++  +++|..+||+.+++    ++..+.++++.|...      ..+.+   -...+|+.++.+.
T Consensus        36 ~l~~~~--~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~   97 (137)
T d2fbha1          36 HLARHR--DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHCS--SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence            454433  46899999999999    999999999999987      11222   3478999998776

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.30  E-value=0.63  Score=31.47  Aligned_cols=48  Identities=4%  Similarity=0.014  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC------CCCC---CCeEecChhhHHHH
Q 045543           13 RAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS------AGDD---RRLQRLAPVAKYVL   64 (239)
Q Consensus        13 ~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~------~~~~---~~~y~~t~~s~~l~   64 (239)
                      ++++|..+||+.+++    ++..+.++++.|...      ..+.   .-...+|+.++.+.
T Consensus        47 ~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~  103 (115)
T d2frha1          47 EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  103 (115)
T ss_dssp             CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             CCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence            367899999999999    999999999999886      1112   23467899887654

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.25  E-value=0.35  Score=36.04  Aligned_cols=37  Identities=11%  Similarity=0.106  Sum_probs=32.8

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|...|.+    +|.|+.|||+.+|+    ++..+.+-|+.|...
T Consensus        19 ~Il~~L~~----~~~~~~ela~~l~~----s~~~v~~HL~~L~~~   55 (194)
T d2p4wa1          19 RILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEA   55 (194)
T ss_dssp             HHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            35667776    79999999999999    999999999999875

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.15  E-value=0.74  Score=27.34  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.++   +.+|..|||+++|+    ++..+.+=++.|...
T Consensus         8 Il~~L~~n---~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~   44 (60)
T d2cyya1           8 IIKILQND---GKAPLREISKITGL----AESTIHERIRKLRES   44 (60)
T ss_dssp             HHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            45667774   68999999999999    999888888777553

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.73  E-value=0.37  Score=32.54  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=32.6

Q ss_pred             ccchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            2 GVFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         2 gifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|+..|...   ++.|+.|||+.+|+    ++..+.+-|+.|...
T Consensus        35 ~Il~~L~~~---~~~~v~ela~~l~~----s~s~vS~HL~~L~~a   72 (108)
T d1u2wa1          35 KITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQ   72 (108)
T ss_dssp             HHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhC---CCccHHHHHHHHcc----ChhHHHHHHHHHHHC
Confidence            466777643   68999999999999    999999999999876

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.42  E-value=1.4  Score=26.05  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             HhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            6 IMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         6 ~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      .|.+-|++...|+.+||.++++    ....+-|+|..|...
T Consensus         7 ~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~k   43 (59)
T d2gxba1           7 FLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKK   43 (59)
T ss_dssp             HHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHc
Confidence            3444444589999999999999    898899999888765

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=80.11  E-value=0.84  Score=27.43  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=30.5

Q ss_pred             cchHhHhcCCCCCCCHHHHHHhCCCCCCCChhhHHHHHHHhccC
Q 045543            3 VFEIMAKAGPRAKLSAAEIEAQMPSHNPNAAVMLDRVLRRSLSS   46 (239)
Q Consensus         3 ifd~L~~~g~~~~~t~~eLA~~~g~~~~~~~~~l~rlL~~L~~~   46 (239)
                      |.+.|.++   +.+|..|||+.+|+    ++..+.+=++-|...
T Consensus        10 IL~~L~~n---~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~   46 (63)
T d2cfxa1          10 IIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESF   46 (63)
T ss_dssp             HHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHC
Confidence            55677774   69999999999999    899888888877654