Citrus Sinensis ID: 045573

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MIKSKTFIKKKLRSKRFRLPRSKISPIVFSENKTTKSFSEFSVDSSSCSHFGDEVSSNIKKRQFEEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSCVLSNSGAAFGEISCKFKKVEPNDNSRSDISSFERNPVCKDNNDVASISSGVESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKSESVVEQETRSSKFDSDLACTEQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSPPSLTYSLFHEFSKQFSRSSVPLDSRKCFLVQEENQPSTFVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK
ccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccc
ccccHHHHccccccccccccccccccEEEEcccccccccEcEccccccccccccccccccccEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccHHHcccccccHHHHHHHHHcccccccccHHHHHcccccHcccccccEEEccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHcc
MIKSKTFIKKKLRskrfrlprskispivfsenkttksfsefsvdssscshfgdevssNIKKRqfeeviepnettkkiqgdepfrRITRSYYKRQMENETKAYEVEasesscvlsnsgaafgEISCKfkkvepndnsrsdissfernpvckdnndvasisSGVESCSVAKLSESRAVEEKLElsdisknggvdsnfivSKSESVveqetrsskfdsdlacteqfsyentsqyssshenafselqfdifpensdlgfsdytpsiffdsgsefserstgdnsppsltysLFHEfskqfsrssvpldsrkcflvqeenqpstfvrfedeedeESYQRFRERERRQTFLYDYaeeyfsgteygDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRieenqpyngrcEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSdhehlsywPSTVAAALVILALLESHQDTSYHRVIEIHVRtkendlpdcik
miksktfikkklrskrfrlprskispivfsenkttksfsefsvdssscshFGDEVssnikkrqfeeviepnettkkiqgdepfrriTRSYYKRQMENETKAYEVEASESSCVLSNSGAAFGEISCKFKkvepndnsrsdissfernpvckdnnDVASISSGVESCSVAKLSESRAVEeklelsdisknggvdsnfivsksesvveqetrsskfdsdlaCTEQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSPPSLTYSLFHEFSKQFSRSSVPLDSRKCFLvqeenqpstfvrfedeedeesyqrfrererrqtflydYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATrieenqpynGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIhvrtkendlpdcik
MIKSKTFIKKKLRSKRFRLPRSKISPIVFSENKTTKsfsefsvdssscshfGDEVSSNIKKRQFEEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSCVLSNSGAAFGEISCKFKKVEPNDNSRSDISSFERNPVCKDNNDVASISSGVESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKSESVVEQETRSSKFDSDLACTEQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSPPSLTYSLFHEFSKQFSRSSVPLDSRKCFLVQEENQPSTFVRFEDEEDeesyqrfrererrQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLkaakadagvdkkakYLAVLALSDHEHLSYWPSTvaaalvilallESHQDTSYHRVIEIHVRTKENDLPDCIK
**********************************************************************************************************************AFGEISC********************************************************************************************************************LQFDIFPENSDLGFSDYTPSIFF******************************************CFL*******************************QTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR***********
*******************************************************************************************************************************************************************************************************************************************************************************************************************FLVQEENQPSTFVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK
MIKSKTFIKKKLRSKRFRLPRSKISPIVFSENKT**********************SNIKKRQFEEVIEPNETTKKIQGDEPFRRITRSYYKRQMENET************VLSNSGAAFGEISCKFKKV**********SSFERNPVCKDNNDVASISSGVESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKS**************SDLACTEQFSYE**********NAFSELQFDIFPENSDLGFSDYTPSIFFDSG*************PSLTYSLFHEFSKQFSRSSVPLDSRKCFLVQEENQPSTFVR**************ERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKE********
*********************SKISPIVFS*******FS******************NIKKRQFEEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSCVL*****************************************************************************************************************************************************************************************SVPLDSRKCFLVQEENQPSTFVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MIKSKTFIKKKLRSKRFRLPRSKISPIVFSENKTTKSFSEFSVDSSSCSHFGDEVSSNIKKRQFEEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSCVLSNSGAAFGEISCKFKKVEPNDNSRSDISSFERNPVCKDNNDVASISSGVESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKSESVVEQETRSSKFDSDLACTEQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSPPSLTYSLFHEFSKQFSRSSVPLDSRKCFLVQEENQPSTFVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNGRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q1PFW3578 Cyclin-SDS OS=Arabidopsis yes no 0.960 0.889 0.473 1e-115
Q10PQ9469 Cyclin-SDS-like OS=Oryza yes no 0.603 0.688 0.467 3e-62
P46278434 G2/mitotic-specific cycli N/A no 0.321 0.396 0.329 3e-17
Q0D9C7419 Cyclin-B2-2 OS=Oryza sati no no 0.325 0.415 0.3 4e-17
A2YH60419 Cyclin-B2-2 OS=Oryza sati N/A no 0.325 0.415 0.3 4e-17
P46277428 G2/mitotic-specific cycli N/A no 0.370 0.462 0.302 4e-17
Q7XSJ6420 Cyclin-B2-1 OS=Oryza sati no no 0.368 0.469 0.292 6e-17
Q01J96423 Cyclin-B2-1 OS=Oryza sati N/A no 0.368 0.465 0.292 7e-17
P30278328 G2/mitotic-specific cycli N/A no 0.321 0.524 0.329 8e-17
P24861426 G2/mitotic-specific cycli N/A no 0.315 0.396 0.343 3e-16
>sp|Q1PFW3|CCSDS_ARATH Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2 Back     alignment and function desciption
 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 269/568 (47%), Positives = 345/568 (60%), Gaps = 54/568 (9%)

Query: 7   FIKKKLRSKRFRLPRSKISPIVFSENKTTK--SFSEFSVDSSS---------CSHFGDEV 55
           F  KKLRS R R  R++ISP++      +K    S  SVDS S         C     E 
Sbjct: 18  FAGKKLRSTRLRRKRAQISPVLVQSPLWSKQIGVSAASVDSCSDLLADDNVSCGSSRVEK 77

Query: 56  SSNIKKRQFEEV--IEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSCVL 113
           SSN KK   EEV   +P    K+  GD  FRRITRSY K  +  E +  E+E SESSCV 
Sbjct: 78  SSNPKKTLIEEVEVSKPGYNVKETIGDSKFRRITRSYSK--LHKEKEGDEIEVSESSCVD 135

Query: 114 SNSGAAFGEISCKFKKVEPNDN---SRSDIS-----SFERNPVCKDNN---DVASISSGV 162
           SNSGA    ++ K  K+  ND    SRSD++     S  R+   +  N   DV S+ SGV
Sbjct: 136 SNSGAGLRRLNVKGNKINDNDEISFSRSDVTFAGHVSNSRSLNFESENKESDVVSVISGV 195

Query: 163 ESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKSESVVEQETRSSKFDSDLACTEQ 222
           E CS        A  E++E+S  S     DS+   +K    ++ E       SDLAC+E+
Sbjct: 196 EYCSKFGSVTGGADNEEIEISKPSSFVEADSSLGSAKE---LKPELEIVGCVSDLACSEK 252

Query: 223 FSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSPPS 282
           FS E     S S ++  SE + +I+ + SD  +SDYTPSIFFDSGSEFSE+S+ D+   S
Sbjct: 253 FSEE----VSDSLDDESSEQRSEIYSQYSDFDYSDYTPSIFFDSGSEFSEKSSSDSPI-S 307

Query: 283 LTYSLFHEFSKQFSRSSVPLD-SRKCFLVQEENQPSTFVRFEDEEDEESYQRFRERERRQ 341
            + SL+ +F +QF RS++P D    C    EE   S  +RF+DEE EESY R RERER  
Sbjct: 308 HSRSLYLQFKEQFCRSTIPNDFGSSC----EEEIHSELLRFDDEEVEESYLRLRERERSH 363

Query: 342 TFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRG 401
            ++ D A+ Y S  +   LI   RS MV WIV +QC+   L QET+FLGV LLDRFLS+G
Sbjct: 364 AYMRDCAKAYCSRMDNTGLIPRLRSIMVQWIV-KQCSDMGLQQETLFLGVGLLDRFLSKG 422

Query: 402 FFKIKRNLQIVGVACLALATRIEENQPYNG--------------RCEVVAMEWLVQEVLN 447
            FK +R L +VG+A L LATRIEENQPYN               R EVVAMEWLVQEVLN
Sbjct: 423 SFKSERTLILVGIASLTLATRIEENQPYNSIRKRNFTIQNLRYSRHEVVAMEWLVQEVLN 482

Query: 448 FQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALL 507
           F+CF PTI+NFLWFYLKAA+A+  V++KAK LAV +LSD   L +WPSTVAAALV+LA +
Sbjct: 483 FKCFTPTIFNFLWFYLKAARANPEVERKAKSLAVTSLSDQTQLCFWPSTVAAALVVLACI 542

Query: 508 ESHQDTSYHRVIEIHVRTKENDLPDCIK 535
           E ++ ++Y RVI++HVRT +N+LP+C+K
Sbjct: 543 EHNKISAYQRVIKVHVRTTDNELPECVK 570
Meiosis-specific cyclin. Required for normal homolog synapsis and recombination in early to mid-prophase 1. May regulate the timing of sister chromatid separation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q10PQ9|CCSDS_ORYSJ Cyclin-SDS-like OS=Oryza sativa subsp. japonica GN=Os03g0225200 PE=2 SV=1 Back     alignment and function description
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description
>sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica GN=CYCB2-2 PE=1 SV=2 Back     alignment and function description
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1 Back     alignment and function description
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P24861|CCNA_PATVU G2/mitotic-specific cyclin-A OS=Patella vulgata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
225424420605 PREDICTED: cyclin-SDS-like [Vitis vinife 0.964 0.852 0.531 1e-136
297737603549 unnamed protein product [Vitis vinifera] 0.919 0.896 0.538 1e-135
147858794626 hypothetical protein VITISV_034263 [Viti 0.964 0.824 0.529 1e-134
255573202493 cyclin, putative [Ricinus communis] gi|2 0.869 0.943 0.519 1e-133
297849892581 hypothetical protein ARALYDRAFT_471662 [ 0.962 0.886 0.482 1e-117
30683981578 cyclin-SDS [Arabidopsis thaliana] gi|147 0.960 0.889 0.473 1e-113
8778235 648 F10B6.15 [Arabidopsis thaliana] 0.962 0.794 0.450 1e-109
356502392624 PREDICTED: cyclin-SDS-like [Glycine max] 0.755 0.647 0.496 1e-101
449449110569 PREDICTED: cyclin-SDS-like [Cucumis sati 0.777 0.731 0.468 6e-98
449526778545 PREDICTED: cyclin-SDS-like, partial [Cuc 0.749 0.735 0.461 7e-91
>gi|225424420|ref|XP_002281487.1| PREDICTED: cyclin-SDS-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 312/587 (53%), Positives = 384/587 (65%), Gaps = 71/587 (12%)

Query: 10  KKLRSKRFRLPRSKISPIVFSEN-----KTTKSFSEFSVDSSSCSHFGDEVSSNIKKRQF 64
           KKLRSK  R  RS+ISPI+++ +     +T      F + SSS S+    +SS ++KR+F
Sbjct: 19  KKLRSKLPRRRRSQISPILYTTSNSNAVRTKSGLHAFPLRSSSSSYNSSRISSFLRKREF 78

Query: 65  EEVIEPNETTKKIQGDEPFRRITRSYYKRQMENETKA----YEVEASESSCVLSNSGAAF 120
           EE+      T+   G+E  RRITRSYY RQ +NE K       VEASESSCV S SGA  
Sbjct: 79  EEIGASGAVTR---GNEKVRRITRSYY-RQKQNERKLEIGDGGVEASESSCVESCSGADV 134

Query: 121 ---GEISCKFKK--------VEPNDNS----RSDISSFE---------------RNPVCK 150
               E S KFK+        +  N+N     RS+ISS +               ++   K
Sbjct: 135 RVSAEASSKFKRKNAENAKIIGGNENPEAVLRSEISSIQQIAGENLKSDARNIKKSSERK 194

Query: 151 DNNDVASISSGVESCSVAKLSES------RAVEEKLELSDISKNGGVDSNFIVSKSESVV 204
           DN+   S++SGVE  S  K   +      RA+E   E+S  S+N  VD+NF +S S S  
Sbjct: 195 DNDVTTSVTSGVELSSEMKFQNASSPLGNRALES--EISRSSRN-YVDANFTISNSGSNS 251

Query: 205 EQETRSSKFDSDLACTEQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFF 264
           EQ  +   FD DL C+E  SY+  S YSSSHE   SE+Q D+ PEN +L FSDYTPS+FF
Sbjct: 252 EQMPKGLVFDCDLCCSEYLSYDEVSDYSSSHEMLISEMQTDVLPENPELDFSDYTPSLFF 311

Query: 265 DSGSEFSERSTGDNSPPSLTYSLFHEFSKQFSRSSVPLDSR-KCFLVQEENQPS-TFVRF 322
           +SGSEFSERS GD S  S T+SLF ++++QFSR +  LD+R    LVQ E +   T +RF
Sbjct: 312 ESGSEFSERSEGD-STRSPTFSLFVQYNQQFSRLASRLDARVSSSLVQNEYRDEFTLLRF 370

Query: 323 EDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKEL 382
           EDE+DEESYQRFR RER+   L+DY +EY S TEYG L+ EQR  MVHWI+EQ   AKEL
Sbjct: 371 EDEDDEESYQRFRSRERKAC-LHDYGKEYCSKTEYGGLVAEQRLLMVHWILEQS-AAKEL 428

Query: 383 HQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYN------------ 430
            +ET+FLGV+LLDRFLS+GFFK KR+LQIVG+ACL LATRIEENQPYN            
Sbjct: 429 QKETLFLGVNLLDRFLSKGFFKNKRSLQIVGIACLTLATRIEENQPYNSLRQKTFCIGNN 488

Query: 431 --GRCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHE 488
              R EV+AMEWLVQEVLNFQCF+PT YNFLWFYLKAA+A A V++ AKYLAVLAL DHE
Sbjct: 489 VFNRREVIAMEWLVQEVLNFQCFMPTTYNFLWFYLKAARASAEVERMAKYLAVLALLDHE 548

Query: 489 HLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK 535
            L YW STVAA LVILA L ++QD S  RV+E HVRTK++DLP+CIK
Sbjct: 549 QLCYWRSTVAAGLVILASLAANQDASCQRVMETHVRTKDDDLPECIK 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737603|emb|CBI26804.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858794|emb|CAN78702.1| hypothetical protein VITISV_034263 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573202|ref|XP_002527530.1| cyclin, putative [Ricinus communis] gi|223533080|gb|EEF34839.1| cyclin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297849892|ref|XP_002892827.1| hypothetical protein ARALYDRAFT_471662 [Arabidopsis lyrata subsp. lyrata] gi|297338669|gb|EFH69086.1| hypothetical protein ARALYDRAFT_471662 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30683981|ref|NP_172928.2| cyclin-SDS [Arabidopsis thaliana] gi|147637577|sp|Q1PFW3.2|CCSDS_ARATH RecName: Full=Cyclin-SDS; AltName: Full=Protein SOLO DANCERS gi|20302467|emb|CAD30003.1| cyclin-like protein [Arabidopsis thaliana] gi|332191096|gb|AEE29217.1| cyclin-SDS [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8778235|gb|AAF79244.1|AC006917_29 F10B6.15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356502392|ref|XP_003520003.1| PREDICTED: cyclin-SDS-like [Glycine max] Back     alignment and taxonomy information
>gi|449449110|ref|XP_004142308.1| PREDICTED: cyclin-SDS-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526778|ref|XP_004170390.1| PREDICTED: cyclin-SDS-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2006827578 SDS "SOLO DANCERS" [Arabidopsi 0.872 0.807 0.447 4.6e-89
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.499 0.622 0.250 7.9e-13
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.325 0.420 0.268 2.3e-10
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.321 0.400 0.281 4.2e-10
RGD|15643671404 Ccnb3 "cyclin B3" [Rattus norv 0.515 0.196 0.243 1.5e-09
UNIPROTKB|F1LVT01408 Ccnb3 "Protein Ccnb3" [Rattus 0.515 0.196 0.243 1.5e-09
UNIPROTKB|P43449395 CCNA2 "Cyclin-A2" [Gallus gall 0.250 0.339 0.337 5.4e-09
UNIPROTKB|F1NJI2398 CCNA2 "Cyclin-A2" [Gallus gall 0.250 0.336 0.337 5.5e-09
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.325 0.405 0.268 6.4e-09
UNIPROTKB|F1NQG1432 CCNA2 "Cyclin-A2" [Gallus gall 0.250 0.310 0.337 6.5e-09
TAIR|locus:2006827 SDS "SOLO DANCERS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 228/510 (44%), Positives = 288/510 (56%)

Query:    54 EVSSNIKKRQFEEV--IEPNETTKKIQGDEPFRRITRSYYKRQMENETKAYEVEASESSC 111
             E SSN KK   EEV   +P    K+  GD  FRRITRSY K   E E    E+E SESSC
Sbjct:    76 EKSSNPKKTLIEEVEVSKPGYNVKETIGDSKFRRITRSYSKLHKEKEGD--EIEVSESSC 133

Query:   112 VLSNSGAAFGEISCKFKKVEPNDN---SRSDIS-----SFERNPVCKDNN---DVASISS 160
             V SNSGA    ++ K  K+  ND    SRSD++     S  R+   +  N   DV S+ S
Sbjct:   134 VDSNSGAGLRRLNVKGNKINDNDEISFSRSDVTFAGHVSNSRSLNFESENKESDVVSVIS 193

Query:   161 GVESCSVAKLSESRAVEEKLELSDISKNGGVDSNFIVSKSESVVEQETRSSKFDSDLACT 220
             GVE CS        A  E++E+S  S     DS+ + S  E   E E       SDLAC+
Sbjct:   194 GVEYCSKFGSVTGGADNEEIEISKPSSFVEADSS-LGSAKELKPELEIVGCV--SDLACS 250

Query:   221 EQFSYENTSQYSSSHENAFSELQFDIFPENSDLGFSDYTPSIFFDSGSEFSERSTGDNSP 280
             E+FS E     S S ++  SE + +I+ + SD  +SDYTPSIFFDSGSEFSE+S+ D SP
Sbjct:   251 EKFSEE----VSDSLDDESSEQRSEIYSQYSDFDYSDYTPSIFFDSGSEFSEKSSSD-SP 305

Query:   281 PSLTYSLFHEFSKQFSRSSVPLD-SRKCFLVQEENQPSTFVRFEDEEDXXXXXXXXXXXX 339
              S + SL+ +F +QF RS++P D    C    EE   S  +RF+DEE             
Sbjct:   306 ISHSRSLYLQFKEQFCRSTIPNDFGSSC----EEEIHSELLRFDDEEVEESYLRLRERER 361

Query:   340 XQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLS 399
                ++ D A+ Y S  +   LI   RS MV WIV+Q C+   L QET+FLGV LLDRFLS
Sbjct:   362 SHAYMRDCAKAYCSRMDNTGLIPRLRSIMVQWIVKQ-CSDMGLQQETLFLGVGLLDRFLS 420

Query:   400 RGFFKIKRNLQIVGVACLALATRIEENQPYNG--------------RCEVVAMEWLVQEV 445
             +G FK +R L +VG+A L LATRIEENQPYN               R EVVAMEWLVQEV
Sbjct:   421 KGSFKSERTLILVGIASLTLATRIEENQPYNSIRKRNFTIQNLRYSRHEVVAMEWLVQEV 480

Query:   446 LNFQCFLPTIYNFLWFYLXXXXXXXXXXXXXXYLAVLALSDHEHLSYWPSTXXXXXXXXX 505
             LNF+CF PTI+NFLWFYL               LAV +LSD   L +WPST         
Sbjct:   481 LNFKCFTPTIFNFLWFYLKAARANPEVERKAKSLAVTSLSDQTQLCFWPSTVAAALVVLA 540

Query:   506 XXESHQDTSYHRVIEIHVRTKENDLPDCIK 535
               E ++ ++Y RVI++HVRT +N+LP+C+K
Sbjct:   541 CIEHNKISAYQRVIKVHVRTTDNELPECVK 570
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP
GO:0051026 "chiasma assembly" evidence=IMP
GO:0010440 "stomatal lineage progression" evidence=RCA
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1564367 Ccnb3 "cyclin B3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVT0 Ccnb3 "Protein Ccnb3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P43449 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJI2 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQG1 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1PFW3CCSDS_ARATHNo assigned EC number0.47350.96070.8892yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.1__1616__AT1G14750.1
annotation not avaliable (581 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_201546.1
annotation not avaliable (596 aa)
      • 0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-15
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-10
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 8e-10
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 4e-08
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 8e-07
cd0004388 cd00043, CYCLIN, Cyclin box fold 3e-05
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 20/132 (15%)

Query: 329 ESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMF 388
           + Y   RE E       DY        +  D+  + R+ ++ W+VE      +L  ET++
Sbjct: 1   DIYAYLRELEEEDRPPPDY------LDQQPDINPKMRAILIDWLVEV-HEEFKLLPETLY 53

Query: 389 LGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYN---------GRC---EVV 436
           L V+ LDRFLS+     +  LQ+VGV CL +A + EE  P +               E++
Sbjct: 54  LAVNYLDRFLSK-QPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEIL 112

Query: 437 AMEWLVQEVLNF 448
            ME L+   LN+
Sbjct: 113 RMELLILSTLNW 124

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.97
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.95
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.86
TIGR00569305 ccl1 cyclin ccl1. University). 99.81
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.7
KOG0835 367 consensus Cyclin L [General function prediction on 99.67
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.64
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.51
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.5
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.28
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.16
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.06
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 98.99
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.65
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.5
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.48
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.09
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.89
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.22
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.75
KOG1598 521 consensus Transcription initiation factor TFIIIB, 94.97
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 91.9
KOG1674218 consensus Cyclin [General function prediction only 89.65
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 89.17
PRK00423 310 tfb transcription initiation factor IIB; Reviewed 83.83
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-34  Score=302.66  Aligned_cols=217  Identities=24%  Similarity=0.248  Sum_probs=201.1

Q ss_pred             CCCCCC-CcccccccccCCCcccCCCCCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhc
Q 045573          298 SSVPLD-SRKCFLVQEENQPSTFVRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQ  376 (535)
Q Consensus       298 s~~P~d-t~ty~i~~v~e~~~~~~~~edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~  376 (535)
                      ..++-| ++..+++|++|           |..+|+.+|+++|....|.++|+.+      |+.+.+.||.+||+|++++ 
T Consensus       162 ~~~dld~~~~~d~~mv~E-----------y~~~Ife~l~k~e~~~lp~~~yl~k------q~~~~~~mR~~Lv~wlvev-  223 (440)
T COG5024         162 SWQDLDATDQEDPLMVPE-----------YASDIFEYLLKLELIDLPNPNYLIK------QSLYEWSMRSILVDWLVEV-  223 (440)
T ss_pred             CccccccccccCccchHH-----------HHHHHHHHHHHHHHHhcCcHHHHhh------cchhHHhHHHHHHHHHHHh-
Confidence            344444 45555666665           8999999999999999999999875      4788899999999999999 


Q ss_pred             cccccCchhHHHHHHHHHHHHHhcCcccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHH
Q 045573          377 CTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQE  444 (535)
Q Consensus       377 ~~~fkLs~eTl~LAV~LLDRFLsk~~V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~  444 (535)
                      |..|++.++|+++||++|||||+...+. ..++||+|++|||||+|+||+.+|..            .++|+.+|+.||.
T Consensus       224 H~~F~llpeTL~lainiiDrfLs~~~v~-l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~  302 (440)
T COG5024         224 HGKFGLLPETLFLAINIIDRFLSSRVVS-LEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLE  302 (440)
T ss_pred             cccccccchHHHHHHHHHHHHhccCccc-HHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhh
Confidence            9999999999999999999999999998 99999999999999999999998865            9999999999999


Q ss_pred             HcCccccCCCHHHHHHHHHHHhccChhhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhC
Q 045573          445 VLNFQCFLPTIYNFLWFYLKAAKADAGVDKKAKYLAVLALSDHEHLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVR  524 (535)
Q Consensus       445 tLdFdL~~PTP~~FL~~fl~~l~~d~~i~~lA~yLLelsLld~~fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTG  524 (535)
                      +|+|++.+|+|+.|++++.++.+.+...+.++.|+++++..++.|.+++||++||||.++|+.+++... |...|..++|
T Consensus       303 ~l~f~is~P~P~sFLRriSka~dyd~~srt~~k~~~e~s~~~~~f~~~~~S~~~aaa~~~s~~~~~~~~-w~~~l~~ySg  381 (440)
T COG5024         303 VLDFNISWPSPMSFLRRISKASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQNQ-WDRTLIHYSG  381 (440)
T ss_pred             hcccccCCCChHHHHHHHHhhcccchhhhhhHhhhCCchHhhhhhccCCchHHHHHHHHHHHhhhccCC-CCccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999944 9999999999


Q ss_pred             -CCcCcccccc
Q 045573          525 -TKENDLPDCI  534 (535)
Q Consensus       525 -yt~~dL~eCi  534 (535)
                       |+..+|.+++
T Consensus       382 ~y~~~~l~~~~  392 (440)
T COG5024         382 NYTNPDLKPLN  392 (440)
T ss_pred             CCCchhHHHHH
Confidence             9999888764

>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 6e-09
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-09
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 7e-09
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-09
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-09
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 7e-09
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-09
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-09
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-09
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 7e-09
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 8e-09
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 8e-09
1vin_A268 Bovine Cyclin A3 Length = 268 8e-09
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 9e-09
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 9e-09
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 9e-09
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 1e-08
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 1e-08
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 1e-08
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 1e-08
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 4e-06
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 9e-06
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-05
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 359 DLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLA 418
           D+    R+ +V W+VE     K L  ET+ L V+ +DRFLS     ++  LQ+VG A + 
Sbjct: 35  DITNSMRAILVDWLVEVGEEYK-LQNETLHLAVNYIDRFLS-SMSVLRGKLQLVGTAAML 92
Query: 419 LATRIEENQP-------------YNGRCEVVAMEWLVQEVLNFQCFLPTIYNFL-WFYLX 464
           LA++ EE  P             Y  + +V+ ME LV +VL F    PT+  FL  ++L 
Sbjct: 93  LASKFEEIYPPEVAEFVYITDDTYTKK-QVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLH 151
Query: 465 XXXXXXXXXXXXXYLAVLALSDHE-HLSYWPST 496
                        +L  L+L D + +L Y PS 
Sbjct: 152 QQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 7e-32
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-31
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 7e-31
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 5e-30
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 5e-30
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-28
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 4e-28
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 4e-28
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-09
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-08
2ivx_A257 Cyclin-T2; transcription regulation, cell division 9e-07
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 9e-06
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score =  123 bits (311), Expect = 7e-32
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 29/230 (12%)

Query: 327 DEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQET 386
           D+   Q     E R      Y +         ++    R  + +W++E     +   +E 
Sbjct: 38  DQRVLQSLLRLEERYVPRASYFQCVQR-----EIKPHMRKMLAYWMLEVCEEQR-CEEEV 91

Query: 387 MFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQP-------------YNGRC 433
             L ++ LDR+LS    + K  LQ++G  C+ LA+++ E  P              +   
Sbjct: 92  FPLAMNYLDRYLSCVPTR-KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVS-PR 149

Query: 434 EVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADAGVD----KKAKYLAVLALSDHEH 489
           ++   E LV   L +       ++FL F L              K A+    L  +D+  
Sbjct: 150 QLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTF 209

Query: 490 LSYWPSTVAAALVILALL----ESHQDTSYHRVIEIHVRTKENDLPDCIK 535
             Y PS +A   +  A+      S        ++     T+ + L  C +
Sbjct: 210 AMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQE 259
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.96
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.96
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.96
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.95
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.95
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.94
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.89
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.8
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.57
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.95
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.63
1ais_B 200 TFB TFIIB, protein (transcription initiation facto 94.19
1c9b_A 207 General transcription factor IIB; protein-DNA comp 92.59
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 86.02
1zp2_A 235 RNA polymerase II holoenzyme cyclin-like subunit; 84.69
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=4.5e-42  Score=340.53  Aligned_cols=204  Identities=30%  Similarity=0.420  Sum_probs=193.4

Q ss_pred             CCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHhcCc
Q 045573          323 EDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLSRGF  402 (535)
Q Consensus       323 edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLsk~~  402 (535)
                      +.+|.+|||.+|+++|.++.|.++|++.      |++|++.||.++||||+++ +..|++.++|+++||+|||||+++..
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~------q~~i~~~~R~~lvdwl~~v-~~~~~l~~~tl~lAv~~lDRfls~~~   75 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKK------QPDITNSMRAILVDWLVEV-GEEYKLQNETLHLAVNYIDRFLSSMS   75 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGG------CSSCCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhc------CCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhccCC
Confidence            4689999999999999999999999985      5899999999999999999 99999999999999999999999999


Q ss_pred             ccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHhccCh
Q 045573          403 FKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCFLPTIYNFLWFYLKAAKADA  470 (535)
Q Consensus       403 V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~~PTP~~FL~~fl~~l~~d~  470 (535)
                      +. +.++||+|+||||||+|+||..||..            +++|++||+.||++|+|+++.|||++|+.+|+..++.+.
T Consensus        76 v~-~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~  154 (260)
T 2cch_B           76 VL-RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN  154 (260)
T ss_dssp             CC-HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC
T ss_pred             CC-HHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence            97 89999999999999999999988765            899999999999999999999999999999999998665


Q ss_pred             -hhHHHHHHHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCCCcCccccccC
Q 045573          471 -GVDKKAKYLAVLALSDHE-HLSYWPSTVAAALVILALLESHQDTSYHRVIEIHVRTKENDLPDCIK  535 (535)
Q Consensus       471 -~i~~lA~yLLelsLld~~-fl~y~PS~IAAAaI~LA~~iL~~~~~W~~~Lq~lTGyt~~dL~eCik  535 (535)
                       ++..+|+++++++++++. ++.|+||.||+|||++|+.+++. +.|...++.++||++++|++|++
T Consensus       155 ~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~  220 (260)
T 2cch_B          155 CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLM  220 (260)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHH
Confidence             899999999999999999 99999999999999999999987 78999999999999999999974
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 1e-16
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 5e-15
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-14
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-14
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 6e-13
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 5e-12
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 5e-11
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-10
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 7e-09
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 30/137 (21%), Positives = 66/137 (48%), Gaps = 19/137 (13%)

Query: 325 EEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQ 384
              EE ++    +E+       + E++        L  + R+ ++ W++ + C   +LH+
Sbjct: 9   ANREEVWKIMLNKEKTYLRDQHFLEQH------PLLQPKMRAILLDWLM-EVCEVYKLHR 61

Query: 385 ETMFLGVSLLDRFLSRGFFKIKRNLQIVGVACLALATRIEENQPY---------NGRC-- 433
           ET +L     DR+++     +K  LQ++G++ L +A ++EE  P          +G C  
Sbjct: 62  ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 121

Query: 434 -EVVAMEWLVQEVLNFQ 449
            E++ ME ++ + L ++
Sbjct: 122 DEILTMELMIMKALKWR 138
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.95
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.95
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.95
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.92
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.89
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.7
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.64
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.48
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.88
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 97.79
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.7
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.36
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.31
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.31
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.23
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.15
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.03
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 95.87
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 95.42
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 91.84
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 90.91
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 88.45
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 85.18
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 82.93
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 81.16
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-28  Score=219.19  Aligned_cols=124  Identities=23%  Similarity=0.408  Sum_probs=114.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHhhhcCCcchHhhhhcCCCCCCCcHHHHHHHHHHhHhhccccccCchhHHHHHHHHHHHHHh
Q 045573          320 VRFEDEEDEESYQRFRERERRQTFLYDYAEEYFSGTEYGDLIREQRSQMVHWIVEQQCTAKELHQETMFLGVSLLDRFLS  399 (535)
Q Consensus       320 ~~~edEY~eEIy~~LrerE~k~~p~~dyL~~~q~~~~q~~It~~~R~~LVDWMieV~~~~fkLs~eTl~LAV~LLDRFLs  399 (535)
                      +.++..|++|||.+|+++|.++.++++|++.      |++++++||..+|+||+++ +..++++.+|+|+||+||||||+
T Consensus         4 p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~------q~~i~~~~R~~lidW~~~v-~~~~~l~~et~~lAv~llDryl~   76 (140)
T d1w98b2           4 PVLSWANREEVWKIMLNKEKTYLRDQHFLEQ------HPLLQPKMRAILLDWLMEV-CEVYKLHRETFYLAQDFFDRYMA   76 (140)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG------CTTCCHHHHHHHHHHHHHH-HHHTTCBHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHHHHhhCCChHHHhC------CCCCCHHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHh
Confidence            3455578999999999999999999999874      5899999999999999999 99999999999999999999998


Q ss_pred             cCc-ccccccchhhhhhHhhhhhhhhccCCCCc------------HHHHHHHHHHHHHHcCcccc
Q 045573          400 RGF-FKIKRNLQIVGVACLALATRIEENQPYNG------------RCEVVAMEWLVQEVLNFQCF  451 (535)
Q Consensus       400 k~~-V~~~~~LQLVgiTCLfIASK~EE~~pp~~------------~~eIl~mE~~IL~tLdFdL~  451 (535)
                      ... ++ ++++||+|+||||||+|++|..+|..            .++|++||+.||++|+|+|+
T Consensus        77 ~~~~v~-~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          77 TQENVV-KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             HCCCCC-GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             cccccc-HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            654 65 89999999999999999999998875            89999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure