Citrus Sinensis ID: 045583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPVLTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHccccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccHccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHHccccccEEcccccccc
Coil and Loop (DISEMBL)
mgrapccdkanvkrgpwspeedATLKRYVEthgtggnwialpqkaglkrcgksCRLRWLnylrpdikhgnftedeDHVICTLYSQIGSRWSIIAsrlpgrtdndvknYWNTKLKKKLLAGKVSLltsnnannspiisgsnptdtnhlhdsnpsislpkseacdpqypasptqlssspsmplltdhhdhiayglstvnnhhfipphsagmsftsstvshqlgtslknspvltssqegssvtlpagnnvnggvedadQILMDfgfgigdpcdqyyvnnngtlwynhqekatshhddlsnwypsllaadssyadikpqglnq
Flexible Loop (DISEMBL)
mgrapccdkanvkrgpwspeedATLKRYVETHgtggnwialpqkagLKRCGKSCRLRWLNYLrpdikhgnftedEDHVICTLYSQIGSRWSIIASrlpgrtdndvkNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPVLTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ
Low Complexity Region (SEG)
MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPVLTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ
Disordered region (IsUnstruct)
***********************TLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLL***********************************************************HHDHIAYGLSTVNNHHFI***********************************************GVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLA***************
Disordered Region (DISOPRED)
*GRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK**************************************************************************************************************************************GVEDADQILMDFGFGIGDPCDQYYVNNNGTLW****************WYPSLLAADS************
Disordered Region (DISEMBL)
MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPK*******************SMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNS**********SVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ
Disordered Region (DISPRO)
***APCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLL*****************************************************************************************************************VTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPVLTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q9M2Y9	310	Transcription factor RAX3	no	no	0.369	0.380	0.813	4e-58
Q9SJL7	298	Transcription factor RAX2	no	no	0.373	0.399	0.798	8e-57
Q9FG68	329	Transcription factor RAX1	no	no	0.369	0.358	0.754	3e-54
Q38851	236	Transcription repressor M	no	no	0.426	0.576	0.569	2e-43
Q9S9K9	257	Transcription factor MYB3	no	no	0.498	0.618	0.521	4e-43
Q9SPG2	366	Transcription factor MYB2	no	no	0.721	0.628	0.384	7e-43
Q7XBH4	257	Myb-related protein Myb4	no	no	0.369	0.459	0.630	2e-42
Q9SZP1	282	Transcription repressor M	no	no	0.498	0.563	0.496	5e-42
P81393	232	Myb-related protein 308 O	N/A	no	0.410	0.564	0.568	7e-42
P20025	255	Myb-related protein Zm38	N/A	no	0.391	0.490	0.595	2e-41

>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1

 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 110/118 (93%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEEDA LK Y+E  GTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLL 118
           YLRP+IKHG F+E+E+++IC+LY  IGSRWSIIA++LPGRTDND+KNYWNT+LKKKL+
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLI 118

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1

 Score =  220 bits (561), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 110/119 (92%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDA LK Y+E  GTGGNWIALP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119
           YLRP+I+HG+FTE+ED++I +L++ IGSRWS+IA+ L GRTDND+KNYWNTKLKKKL+A
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIA 119

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 106/118 (89%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSPEED+ L+ Y+E +G GGNWI+ P KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLL 118
           YLRP+IKHG+F+E+ED +I +L++ IGSRWSIIA+ LPGRTDND+KNYWNTKL+KKLL
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLL 118

Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  +G W+ EED  L  Y+  HG G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGC-WRSLPKSAGLLRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPD+K GNFT+DED +I  L+S +G++WS+IA RLPGRTDN++KNYWNT +K+KLL+ 
Sbjct: 60  YLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSH 119

Query: 121 KVSLLTSNNANNSPIIS 137
            +   T    N S  +S
Sbjct: 120 GIDPQTHRQINESKTVS 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 114/163 (69%), Gaps = 4/163 (2%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA++ +G W+ EED  L  Y+  HG G  W +LP+ AGL+RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGC-WRSLPRAAGLQRCGKSCRLRWMN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPD+K GNFTE+ED +I  L+S +G++WS+IA RLPGRTDN++KNYWNT +K+KLL+ 
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSR 119

Query: 121 KV---SLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSE 160
            +   S    N +  SP    ++  +T HL  S P    P  E
Sbjct: 120 GIDPNSHRLINESVVSPSSLQNDVVETIHLDFSGPVKPEPVRE 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 152/268 (56%), Gaps = 38/268 (14%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           M R PCC    +K+G W+ EED  L  Y+  HG GG W  +PQKAGLKRCGKSCRLRW N
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGG-WRDIPQKAGLKRCGKSCRLRWTN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YL+P+IK G F+ +E+ +I  L++  G++WS+IA  LP RTDN++KNYWNT LKK+L+  
Sbjct: 60  YLKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQ 119

Query: 121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMP 180
            +  +T     + P+ S SNPT   +L+        P + + D QY       S S SMP
Sbjct: 120 GIDPVT-----HKPLASSSNPTVDENLNS-------PNASSSDKQY-------SRSSSMP 160

Query: 181 LLTD---HHDHIAYGLSTVNNHHFIPPHSAGMS----FTSSTVSHQL-------GTSLKN 226
            L+       ++   +S ++++   P   + +S    F  S+ + +L        TS+K+
Sbjct: 161 FLSRPPPSSCNMVSKVSELSSNDGTPIQGSSLSCKKRFKKSSSTSRLLNKVAAKATSIKD 220

Query: 227 SPVLTSSQEG--SSVTLPAGNNVNGGVE 252
             +L++S EG  S+ T+   +  NG  E
Sbjct: 221 --ILSASMEGSLSATTISHASFFNGFTE 246

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCC+K  +K+GPW+PEED  L  +++ HG G NW ALP++AGL RCGKSCRLRW+N
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHG-NWRALPKQAGLLRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119
           YLRPDIK GNF+++E+  I  L+  +G+RWS IA+RLPGRTDN++KN W+T LKK+L A
Sbjct: 60  YLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDA 118

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 110/163 (67%), Gaps = 4/163 (2%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  +G W+ EED  L  Y++ HG G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGC-WRSLPKAAGLLRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPD+K GNFTE+ED +I  L+S +G++WS+IA RLPGRTDN++KNYWNT +++KL+  
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINR 119

Query: 121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISL---PKSE 160
            +   +      S     S PT    +  +  +IS    PK E
Sbjct: 120 GIDPTSHRPIQESSASQDSKPTQLEPVTSNTINISFTSAPKVE 162

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  +G W+ EED  L  Y+  HG G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPD+K GNFTE+ED +I  L+S +G++WS+IA RLPGRTDN++KNYWNT +++KLL+ 
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSR 119

Query: 121 KVSLLTSNNANN 132
            +   T  + N+
Sbjct: 120 GIDPTTHRSIND 131

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 98/126 (77%), Gaps = 1/126 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  RG W+ EED  L  Y+  HG G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEG-CWRSLPKAAGLLRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPD+K GNFT DED +I  L+S +G++WS+IA+RLPGRTDN++KNYWNT +++KLL  
Sbjct: 60  YLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGR 119

Query: 121 KVSLLT 126
            +  +T
Sbjct: 120 GIDPVT 125

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
224092242	302	predicted protein [Populus trichocarpa]	0.905	0.956	0.510	1e-69
356564099	309	PREDICTED: uncharacterized protein LOC10	0.394	0.407	0.873	8e-64
356548268	305	PREDICTED: transcription repressor MYB4-	0.504	0.527	0.666	5e-60
148905997	415	unknown [Picea sitchensis]	0.369	0.284	0.847	9e-60
388501912	319	unknown [Lotus japonicus]	0.445	0.445	0.741	2e-59
356518150	355	PREDICTED: transcription factor RAX3 [Gl	0.517	0.464	0.641	2e-59
296081600	259	unnamed protein product [Vitis vinifera]	0.366	0.451	0.871	6e-59
225429418	264	PREDICTED: transcription repressor MYB6-	0.366	0.443	0.871	6e-59
356533183	320	PREDICTED: transcription factor GAMYB-li	0.445	0.443	0.710	7e-59
224138830	331	predicted protein [Populus trichocarpa]	0.373	0.359	0.840	8e-59

>gi|224092242|ref|XP_002309524.1| predicted protein [Populus trichocarpa] gi|222855500|gb|EEE93047.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/327 (51%), Positives = 204/327 (62%), Gaps = 38/327 (11%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDATLK Y+ETHGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKSYLETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPDIKHG FTE+ED++ICTLYSQ+GSRWS+IA++LPGRTDNDVKNYWNTKLKKK+LAG
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYSQMGSRWSLIAAQLPGRTDNDVKNYWNTKLKKKILAG 120

Query: 121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPA---SPTQLSSSP 177
           K+SL   NN  N+P+   + P        ++P + +PK+E       +   S TQ+S   
Sbjct: 121 KISLTIKNNPINAPVNVANIPAIP---CSTSPILYVPKAETESSVTFSDHYSLTQISG-- 175

Query: 178 SMPLLTDHH-----DHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSH-----QLGTSLKNS 227
           ++P L+D       +  A  LS         P    MS  S   +H     Q G+S+ +S
Sbjct: 176 TLPALSDIGYEPIINSTAQNLSPNQFQFSSFPGVIDMSEFSMNSTHIVSPSQEGSSISDS 235

Query: 228 PVLTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNNGTLWYNHQEK 287
             L    +G SV      + NGG+ED   I MD   G   P D +    NG L    Q+K
Sbjct: 236 SSLAMDNKGLSVP-----STNGGLEDVG-IFMDSEPGF--PSDFF----NGLLL---QDK 280

Query: 288 ATSHHDDLSNWYPSLLAADSSYADIKP 314
           A+    +   ++     A   Y DIKP
Sbjct: 281 ASEVATNCYQYF-----AGFGYVDIKP 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564099|ref|XP_003550294.1| PREDICTED: uncharacterized protein LOC100789985 [Glycine max]

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 121/126 (96%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDATLK YVETHGTGGNWIALP+KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRPDIKHG FTE+ED++ICTLY+Q+GSRWS IAS+LPGRTDNDVKNYWNTKLKKK++A 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAR 120

Query: 121 KVSLLT 126
           KV+L T
Sbjct: 121 KVTLKT 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548268|ref|XP_003542525.1| PREDICTED: transcription repressor MYB4-like [Glycine max]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 130/165 (78%), Gaps = 4/165 (2%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEED  L+ Y+E +GTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDEKLREYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRP++KHG F+EDED +ICTLY+ IGSRWSIIAS+LPGRTDND+KNYWNTKLKKK++  
Sbjct: 61  YLRPNLKHGEFSEDEDRIICTLYASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGM 120

Query: 121 KVSLLTS-NNANNSPIISGSNPTDT---NHLHDSNPSISLPKSEA 161
             S L   +  N SP++  S P+ +   NH     P +    SE+
Sbjct: 121 NPSALKKPHQVNLSPMLQNSTPSSSFKNNHNSYFQPHLPFTGSES 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148905997|gb|ABR16159.1| unknown [Picea sitchensis]

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 100/118 (84%), Positives = 112/118 (94%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEED  LK +VE HGTGGNWIALP+KAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDTILKNFVEKHGTGGNWIALPRKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLL 118
           YLRPDIKHG+F+E+ED +IC+LY+ IGSRWSIIA++LPGRTDND+KNYWNT+LKKKLL
Sbjct: 61  YLRPDIKHGDFSEEEDSIICSLYTSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501912|gb|AFK39022.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEED+ LK Y+E HGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDSRLKEYMEKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRP+IKHG F+E+ED +IC+LY+ IGSRWSIIA++LPGRTDND+KNYWNTKLKKKL++ 
Sbjct: 61  YLRPNIKHGEFSEEEDTIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSF 120

Query: 121 KVSLLTSNNANNSPIISGSNPTD 143
           +     S +  N P+I  S+  D
Sbjct: 121 RRQPYQS-SPQNPPLIIPSHYRD 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518150|ref|XP_003527745.1| PREDICTED: transcription factor RAX3 [Glycine max]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 127/170 (74%), Gaps = 5/170 (2%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEED  LK Y+E HGTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRP+I+HG F+E+ED++IC+LY  IGSRWS+IA++LPGRTDND+KNYWNT+LKKKLL  
Sbjct: 61  YLRPNIRHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGK 120

Query: 121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASP 170
               L + N  N  I+   N +    L   N +  L     C PQ P  P
Sbjct: 121 HRKELQARNKGNGGILKQENSSSL--LLQQNSAQQL---HPCWPQIPVLP 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081600|emb|CBI20605.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 112/117 (95%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDATL+ YV+THG GGNWIALP+KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLRNYVQTHGIGGNWIALPRKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           YLRPDIKHG FTE+ED VIC +Y+Q+GSRWS+IAS+LPGRTDNDVKNYWNTKLKKKL
Sbjct: 61  YLRPDIKHGGFTEEEDKVICAIYNQMGSRWSVIASQLPGRTDNDVKNYWNTKLKKKL 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429418|ref|XP_002278546.1| PREDICTED: transcription repressor MYB6-like [Vitis vinifera]

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 112/117 (95%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDATL+ YV+THG GGNWIALP+KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLRNYVQTHGIGGNWIALPRKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           YLRPDIKHG FTE+ED VIC +Y+Q+GSRWS+IAS+LPGRTDNDVKNYWNTKLKKKL
Sbjct: 61  YLRPDIKHGGFTEEEDKVICAIYNQMGSRWSVIASQLPGRTDNDVKNYWNTKLKKKL 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533183|ref|XP_003535147.1| PREDICTED: transcription factor GAMYB-like [Glycine max]

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 122/145 (84%), Gaps = 3/145 (2%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEED  L+ Y+E HGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDEKLREYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
           YLRP++KHG F+E ED +ICTL++ IGSRWSIIAS+LPGRTDND+KNYWNTKLKKK++  
Sbjct: 61  YLRPNLKHGEFSEGEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGV 120

Query: 121 KV---SLLTSNNANNSPIISGSNPT 142
           K+   +L   +  N S ++  S P+
Sbjct: 121 KMNPSALKKPHQVNLSSMLQNSTPS 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138830|ref|XP_002322912.1| predicted protein [Populus trichocarpa] gi|222867542|gb|EEF04673.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 111/119 (93%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKRGPWSPEEDA LK Y+  HGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKEYMAKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA 119
           YLRP+IKHG F++DED +IC+LY+ IGSRWSIIA++LPGRTDND+KNYWNTKLKKKL+ 
Sbjct: 61  YLRPNIKHGEFSDDEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMG 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2097335	310	MYB84 "myb domain protein 84"	0.369	0.380	0.813	2.6e-57
TAIR|locus:2174557	333	MYB36 "myb domain protein 36"	0.780	0.747	0.477	2.9e-55
TAIR|locus:2169970	374	MYB68 "myb domain protein 68"	0.369	0.315	0.822	6.1e-55
TAIR|locus:2137589	305	MYB87 "myb domain protein 87"	0.865	0.904	0.430	7.8e-55
TAIR|locus:2057931	298	RAX2 "REGULATOR OF AXILLARY ME	0.479	0.513	0.651	3.4e-54
TAIR|locus:2181146	329	MYB37 "myb domain protein 37"	0.514	0.498	0.593	2.4e-53
TAIR|locus:2161820	320	MYB80 [Arabidopsis thaliana (t	0.467	0.465	0.565	1e-45
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.435	0.358	0.549	4.7e-44
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.498	0.673	0.509	1.3e-43
TAIR|locus:2154119	352	MYB96 "myb domain protein 96"	0.711	0.644	0.426	1.7e-43

TAIR|locus:2097335 MYB84 "myb domain protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
 Identities = 96/118 (81%), Positives = 110/118 (93%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVK+GPWSPEEDA LK Y+E  GTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLL 118
             YLRP+IKHG F+E+E+++IC+LY  IGSRWSIIA++LPGRTDND+KNYWNT+LKKKL+
Sbjct:    61 YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLI 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 127/266 (47%), Positives = 161/266 (60%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVK+GPWSPEED  LK Y++ +GTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRP+IKHG F+E+ED +I +LY  IGSRWSIIA++LPGRTDND+KNYWNTKLKKKLL  
Sbjct:    61 YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query:   121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQLSSSPSMP 180
             +  +   ++  +S   + SN  + N+    N S S  +      Q     +  SS  + P
Sbjct:   121 QKQMNRQDSITDSTENNLSN--NNNNKSPQNLSNSALERLQLHMQLQNLQSPFSSFYNNP 178

Query:   181 LLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLK---NSPVLTSSQEGS 237
             +L      +    ST  N +  P  ++  SF      H LG ++    N+  L     G+
Sbjct:   179 ILWPKLHPLLQ--STTTNQN--PKLASQESF------HPLGVNVDHQHNNTKLAQINNGA 228

Query:   238 SVTLPAGNNVNGGVEDADQILMDFGF 263
             S       NV      A +   +FGF
Sbjct:   229 SSLY--SENVEQSQNPAHEFQPNFGF 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2169970 MYB68 "myb domain protein 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 97/118 (82%), Positives = 109/118 (92%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVK+GPWSPEEDA LK Y+E  GTGGNWIALPQK GL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLL 118
             YLRP+IKHG F+E+ED++IC LY  IGSRWSIIA++LPGRTDND+KNYWNT+LKKKLL
Sbjct:    61 YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2137589 MYB87 "myb domain protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 124/288 (43%), Positives = 162/288 (56%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VK+GPWS EEDA LK Y+E HGTG NWI+LPQ+ G+KRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA- 119
             YLRP++KHG FT++ED++IC+LY  IGSRWSIIAS+LPGRTDND+KNYWNT+LKKKLL+ 
Sbjct:    61 YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query:   120 -GKVSLLTSN-NANNSPIISGSNPTDTNHLHDSNP-SISLPKSEACDPQYPA----SPTQ 172
              GK      N         S S+       HD N  S     ++  DP   A      + 
Sbjct:   121 QGKAFHQQLNVKFERGTTSSSSSQNQIQIFHDENTKSNQTLYNQVVDPSMRAFAMEEQSM 180

Query:   173 LSSSPSMPLLTDHHD---HIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPV 229
             + +    P   + +     + Y  +  + HH   P    MS TSS  ++     + +  V
Sbjct:   181 IKNQILEPFSWEPNKVLFDVDYDAAASSYHHHASPSLNSMSSTSSIGTNNSSLQMSHYTV 240

Query:   230 LTSSQEGSSVTLPAGNNVNGGVEDADQILMDFGFGIGDPCDQYYVNNN 277
               +  +   +    G   N   E  D+I  +     G    +  +NNN
Sbjct:   241 NHNDHDQPDMFFMDGFE-NFQAELFDEIANNNTVENGFDGTEILINNN 287

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2057931 RAX2 "REGULATOR OF AXILLARY MERISTEMS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 103/158 (65%), Positives = 125/158 (79%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKRGPWSPEEDA LK Y+E  GTGGNWIALP KAGL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRP+I+HG+FTE+ED++I +L++ IGSRWS+IA+ L GRTDND+KNYWNTKLKKKL+A 
Sbjct:    61 YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query:   121 KVS-----LLTSNNANNSPIISGSNPTDTNHLHDSNPS 153
                     L  + +++++   S S+    N L   NPS
Sbjct:   121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPS 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IMP

TAIR|locus:2181146 MYB37 "myb domain protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 102/172 (59%), Positives = 133/172 (77%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VKRGPWSPEED+ L+ Y+E +G GGNWI+ P KAGL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRP+IKHG+F+E+ED +I +L++ IGSRWSIIA+ LPGRTDND+KNYWNTKL+KKLL+ 
Sbjct:    61 YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query:   121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQYPASPTQ 172
                  +S++A  SP +   NP   +    ++P+ ++P S + +P Y  +P Q
Sbjct:   121 SSD--SSSSAMASPYL---NPISQDVKRPTSPT-TIPSS-SYNP-YAENPNQ 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2161820 MYB80 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 86/152 (56%), Positives = 111/152 (73%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR PCC+K NVKRG W+PEED  L  Y+  HGT  NW  +P+ AGL+RCGKSCRLRW N
Sbjct:     1 MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTN 59

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRPD+KHG F+E E+H+I   +S +G+RWS+IA++LPGRTDNDVKNYWNTKLKKKL   
Sbjct:    60 YLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKKLSGM 119

Query:   121 KVSLLTSNNANN--SPIISGSNPTDTNHLHDS 150
              +  +T    ++  + I +  NP   +HL ++
Sbjct:   120 GIDPVTHKPFSHLMAEITTTLNPPQVSHLAEA 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 78/142 (54%), Positives = 102/142 (71%)

Query:     4 APCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR 63
             +PCCDKA +K+GPW+PEED  L  Y+E HG G +W +LP+KAGL+RCGKSCRLRW NYLR
Sbjct:    47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLQRCGKSCRLRWTNYLR 105

Query:    64 PDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVS 123
             PDIK G FT  E+  I  L++ +G+RWS IA+ LP RTDN++KNYWNT LKK+L+   + 
Sbjct:   106 PDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGID 165

Query:   124 LLTSNNANNSPIISGSNPTDTN 145
              +T  + N +  +S S     N
Sbjct:   166 PVTHKHKNET--LSSSTGQSKN 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 83/163 (50%), Positives = 114/163 (69%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR+PCC+KA+  +G W+ EED  L  Y+  HG G  W +LP+ AGL RCGKSCRLRW+N
Sbjct:     1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGC-WRSLPKSAGLLRCGKSCRLRWIN 59

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRPD+K GNFT+DED +I  L+S +G++WS+IA RLPGRTDN++KNYWNT +K+KLL+ 
Sbjct:    60 YLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSH 119

Query:   121 KVSLLTSNNANNSPIISGSN--PTDTNHLHDSNPSISL-PKSE 160
              +   T    N S  +S     P   + +  S  ++++ PK+E
Sbjct:   120 GIDPQTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTE 162

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 104/244 (42%), Positives = 139/244 (56%)

Query:     1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR PCC+K  VK+GPW+PEED  L  Y++ HG G NW ++P   GL+RC KSCRLRW N
Sbjct:     1 MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPG-NWRSVPTHTGLRRCSKSCRLRWTN 59

Query:    61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG 120
             YLRP IK GNFTE E+  I  L + +G+RW+ IAS LP RTDND+KNYWNT LKKKL   
Sbjct:    60 YLRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLK-- 117

Query:   121 KVSLLTSNNANNSPIISGSNPTDTNHLHDSN--------PSISLPKSEACDPQYPASPTQ 172
             K++   S   +N  + S +  +  NH   +           I++ K   C+      P+ 
Sbjct:   118 KIN--ESGEEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSS 175

Query:   173 -LSSSPSMPLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKNSPVLT 231
              LSSS S+P       +I    S + +  +  P S+  S T++T S+   T+   S V  
Sbjct:   176 TLSSSSSLPTPVITQQNIRNFSSALLDRCY-DPSSSSSSTTTTTTSNT--TNPYPSGVYA 232

Query:   232 SSQE 235
             SS E
Sbjct:   233 SSAE 236

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB133 hypothetical protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-45
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-42
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-07
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-06
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.003

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  154 bits (390), Expect = 2e-45
 Identities = 79/173 (45%), Positives = 104/173 (60%), Gaps = 21/173 (12%)

Query: 5   PCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
           PCC K  +KRGPW+ EED  L  +++  G G  W +LP++AGL RCGKSCRLRW+NYLRP
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 65  DIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSL 124
            +K G  T DE+ +I  L+  +G+RWS+IA R+PGRTDN++KNYWNT L+KKLL   +  
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDP 134

Query: 125 LTSNNANNSPIISGSNPTDTNHLHDSNPSISLPKSEACDPQ-YPASPTQLSSS 176
            T              P D N++H        P+ E    Q YP  P   S +
Sbjct: 135 QT------------HKPLDANNIHK-------PEEEVSGGQKYPIEPISSSHT 168

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  151 bits (383), Expect = 2e-42
 Identities = 66/117 (56%), Positives = 93/117 (79%), Gaps = 1/117 (0%)

Query: 1   MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR  CC K  +++G WSPEED  L R++  +G G  W ++P++AGL+RCGKSCRLRW+N
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWIN 59

Query: 61  YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           YLRPD+K G F++ E+++I  L++ +G+RWS IA++LPGRTDN++KN WN+ LKKKL
Sbjct: 60  YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 64.8 bits (159), Expect = 5e-14
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62
          RGPW+PEED  L   V+ HG  GNW  + +     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGN-GNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 11  NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70
             K G W   ED  LK  V+  G   NW  +         GK    RW N+L P +K  N
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKN 74

Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWN 110
           ++E+ED  +  L  ++G++WS IA     RT       + 
Sbjct: 75  WSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 17 WSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDED 76
          W+ EED  L + VE +G     IA      L R   +CR RW   LRP    G +T++ED
Sbjct: 1  WTEEEDEKLLKLVEKYGNDWKQIA----EELGRTPSACRDRWRRKLRPKRSRGPWTKEED 56

Query: 77 H 77
           
Sbjct: 57 Q 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 68  HGNFTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYWNTKL 113
            G +T +ED ++     + G+  WS IA  LPGRTDN  KN WN  L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          +G W+ EED  L   V+ +G   NW  + ++    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62
          PW+ EED  L   V+ +G   NW  + ++    R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 70  NFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKL 113
            +TE+ED ++     + G   W  IA  LPGRT    +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +TE+ED  +  L  + G+ W  IA  L GRT +  ++ W  KL+ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 16 PWSPEEDATLKRYVETHGTGGNW--IALPQKAGLKRCGKSCRLRWLN 60
           W+ EED  L   VE +G  GNW  I         R     + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGV-GNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.69
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.61
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.49
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.34
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.3
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.3
PLN03212	249	Transcription repressor MYB5; Provisional	99.24
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.09
PLN03091	459	hypothetical protein; Provisional	99.06
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.04
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.92
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.78
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.73
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.34
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.6
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.54
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.39
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.35
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.21
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.09
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.95
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.91
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.77
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.63
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.63
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.62
PRK13923	170	putative spore coat protein regulator protein YlbO	96.43
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.43
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.4
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.21
PRK13923	170	putative spore coat protein regulator protein YlbO	95.4
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.25
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.08
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.6
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.02
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.49
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.46
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.38
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.12
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.59
KOG1194	534	consensus Predicted DNA-binding protein, contains	91.82
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.6
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	88.99
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.16
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.85

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-38  Score=308.19  Aligned_cols=128  Identities=52%  Similarity=1.041  Sum_probs=121.6

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHH
Q 045583            1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVIC   80 (319)
Q Consensus         1 MGr~~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll   80 (319)
                      |||++||.|++++|++||+|||++|+++|++||. .+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~-~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL   79 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII   79 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCc-CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999998 699999999888999999999999999999999999999999999


Q ss_pred             HHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccccCC
Q 045583           81 TLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSNN  129 (319)
Q Consensus        81 ~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~~  129 (319)
                      +++++||++|++||+.|||||+++|||||+.++||++.+.++...++..
T Consensus        80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kp  128 (459)
T PLN03091         80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP  128 (459)
T ss_pred             HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999999999887776654443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=1.1e-37  Score=287.52  Aligned_cols=123  Identities=55%  Similarity=1.137  Sum_probs=117.3

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHH
Q 045583            3 RAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTL   82 (319)
Q Consensus         3 r~~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~l   82 (319)
                      ++|||.|++++|++||+|||++|+++|++||. .+|..||++++.+|+++|||+||.++|+|.+++++||+|||++|+++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~-~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel   92 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGE-GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL   92 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCc-ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence            67999999999999999999999999999997 59999999997799999999999999999999999999999999999


Q ss_pred             HhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccc
Q 045583           83 YSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLT  126 (319)
Q Consensus        83 v~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~  126 (319)
                      +.+||++|+.||+.|||||+++|||||+.++++++.+.+....+
T Consensus        93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~  136 (249)
T PLN03212         93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT  136 (249)
T ss_pred             HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999987766544

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=6.4e-36  Score=276.99  Aligned_cols=112  Identities=58%  Similarity=1.060  Sum_probs=107.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS   88 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~   88 (319)
                      |+.+.||+||+|||++|+++|++||. ++|..||+.+|++|++++||+||.|||+|++++|.||+|||++|++++..+|+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~-~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGK-HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCC-CCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence            44456899999999999999999999 69999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCC
Q 045583           89 RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGK  121 (319)
Q Consensus        89 kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k  121 (319)
                      +|+.||++|||||+++|||+|++.+||++....
T Consensus        83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999998765

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=3.4e-18  Score=174.03  Aligned_cols=120  Identities=23%  Similarity=0.471  Sum_probs=111.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccc-------------------------------
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRL-------------------------------   56 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~-------------------------------   56 (319)
                      ..|.++|-.|++|||++|+++...+|. .+|..||..+|.+|+..||..                               
T Consensus       247 l~P~~nk~~WS~EE~E~L~AiA~A~~~-~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  247 LNPKWNKEHWSNEEVEKLKALAEAPKF-VSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             cCCccchhccChHHHHHHHHHHhcccc-ccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            468899999999999999999999998 699999999998899999865                               


Q ss_pred             -----------------------ccccccCCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHH
Q 045583           57 -----------------------RWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        57 -----------------------Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                                             ||...|+|++++|+||.+||.+|+.+|.+||. .|.+|...+|||++.|||.||.+.
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv  405 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV  405 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence                                   99999999999999999999999999999997 599999999999999999999999


Q ss_pred             hhhHHhcCCCcccccC
Q 045583          113 LKKKLLAGKVSLLTSN  128 (319)
Q Consensus       113 lkkkl~~~k~s~~~~~  128 (319)
                      |....+.+.|++....
T Consensus       406 L~~s~K~~rW~l~ede  421 (939)
T KOG0049|consen  406 LNRSAKVERWTLVEDE  421 (939)
T ss_pred             HHHhhccCceeecchH
Confidence            9999999999987543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.69  E-value=1.5e-17  Score=169.46  Aligned_cols=117  Identities=27%  Similarity=0.387  Sum_probs=103.3

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHH
Q 045583            1 MGRAPCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVIC   80 (319)
Q Consensus         1 MGr~~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll   80 (319)
                      +||......|++++|+||++||.+|+.+|.+||. .+|-+|-..++ +|+..|||+||.|.|....|.+.||-.||+.|+
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~  424 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL  424 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCc-cchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence            4777888899999999999999999999999998 59999988888 999999999999999999999999999999999


Q ss_pred             HHHhhhCC-chhhhcccCCCCCH---HHHHHHHHHHhhhHHhcC
Q 045583           81 TLYSQIGS-RWSIIASRLPGRTD---NDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        81 ~lv~~~G~-kWs~IA~~lpgRT~---~qcKnRW~~~lkkkl~~~  120 (319)
                      .+|++||. .|.+||..||.||.   ..||.|+. ..++++..+
T Consensus       425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~-~~k~rl~~~  467 (939)
T KOG0049|consen  425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI-AAKLRLAAG  467 (939)
T ss_pred             HHHHHHccchHHHHHHHccccchhHHHHHHHHHH-HHHHHHhcC
Confidence            99999997 89999999999999   44555552 234444443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.61  E-value=2.7e-16  Score=115.75  Aligned_cols=60  Identities=40%  Similarity=0.823  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHH
Q 045583           17 WSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVI   79 (319)
Q Consensus        17 WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~L   79 (319)
                      ||+|||++|+++|.+||.  +|..||+.++ .|++.||+.||.++|++.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN--DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS---HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc--CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996  8999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=4.9e-15  Score=150.14  Aligned_cols=108  Identities=30%  Similarity=0.510  Sum_probs=101.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS   88 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~   88 (319)
                      ...++.|.|+..||+.|..+|+++|. .+|..||..+. .|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~-nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhccc-ccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            35678899999999999999999999 58999999998 68999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhHHh
Q 045583           89 RWSIIASRLPGRTDNDVKNYWNTKLKKKLL  118 (319)
Q Consensus        89 kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~  118 (319)
                      +|+.||..+++||+.+|.+||...+.....
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999988776544

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=6e-15  Score=147.64  Aligned_cols=109  Identities=26%  Similarity=0.504  Sum_probs=101.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCch
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRW   90 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW   90 (319)
                      -++.|-|+.-||+.|..+|.+||. ..|+.|++.+. ..+++||+.||..+|+|.|++..|+.|||++|+.+++.+...|
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~-nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGK-NQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcch-HHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            357889999999999999999999 58999999987 7799999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHhhhHHhcCCC
Q 045583           91 SIIASRLPGRTDNDVKNYWNTKLKKKLLAGKV  122 (319)
Q Consensus        91 s~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~  122 (319)
                      ..||..| |||.+||-.||+.++-..+....-
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999 999999999999998877665443

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.45  E-value=5.8e-14  Score=143.87  Aligned_cols=104  Identities=26%  Similarity=0.582  Sum_probs=94.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCC--CCCCCCHHHHHHHHHHHh------
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDI--KHGNFTEDEDHVICTLYS------   84 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~l--krg~WT~EED~~Ll~lv~------   84 (319)
                      .||.||+||++.|..+|.++|.  .|..|++.+|  |.+..||+||+++...+-  +++.||.||++.|+++|.      
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~  458 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN--DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREA  458 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc--cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999997  8999999987  999999999999999874  899999999999999995      


Q ss_pred             -hh-------------------CCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583           85 -QI-------------------GSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        85 -~~-------------------G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~  120 (319)
                       ++                   +..|+.|++.+.+|+..|||.+|..++......+
T Consensus       459 ~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  459 LQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             hcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence             23                   2369999999999999999999999988776543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.34  E-value=8.4e-13  Score=93.51  Aligned_cols=46  Identities=33%  Similarity=0.652  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCc-hhhhcccCC-CCCHHHHHHHHHHHh
Q 045583           68 HGNFTEDEDHVICTLYSQIGSR-WSIIASRLP-GRTDNDVKNYWNTKL  113 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~lp-gRT~~qcKnRW~~~l  113 (319)
                      +++||+|||++|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999998 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.30  E-value=3.4e-13  Score=95.55  Aligned_cols=48  Identities=40%  Similarity=0.748  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      |++||+|||++|+++|.+||. ++|..||..++.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-DNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998 359999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.30  E-value=2.2e-12  Score=94.89  Aligned_cols=54  Identities=30%  Similarity=0.591  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcc
Q 045583           71 FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSL  124 (319)
Q Consensus        71 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~  124 (319)
                      ||+|||++|++++.+||.+|..||++|+.||..+|++||...|++.+.+++|+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~   54 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTK   54 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCH
Confidence            999999999999999999999999999669999999999998887777777764

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.24  E-value=6.7e-12  Score=116.82  Aligned_cols=66  Identities=20%  Similarity=0.429  Sum_probs=60.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccC-CCCCHHHHHHHHHHHhhhHHhcCCCcccccC
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRL-PGRTDNDVKNYWNTKLKKKLLAGKVSLLTSN  128 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l-pgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~  128 (319)
                      ++.+++++||+|||++|+++|++||. +|..||+++ ++||..|||.||..+|+..+.++.|+.....
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~   87 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEED   87 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHH
Confidence            36889999999999999999999995 899999998 6999999999999999999999999876544

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=3.8e-11  Score=82.43  Aligned_cols=47  Identities=40%  Similarity=0.820  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      +++||++||.+|+.++.++| .+|..||..|++||..+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 899999999999999999999987664

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.09  E-value=6.6e-11  Score=110.04  Aligned_cols=64  Identities=19%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCC-CCCHHHHHHHHHHHhhhHHhcCCCcccc
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLP-GRTDNDVKNYWNTKLKKKLLAGKVSLLT  126 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lp-gRT~~qcKnRW~~~lkkkl~~~k~s~~~  126 (319)
                      ++.+.+|+||.|||++|+++|++||. +|..||+.++ +|+..+||-||.++|+..+++|.|+...
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eE   69 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEE   69 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHH
Confidence            34566899999999999999999998 6999999998 9999999999999999999999988754

>PLN03091 hypothetical protein; Provisional

Probab=99.06  E-value=1.2e-10  Score=115.94  Aligned_cols=65  Identities=18%  Similarity=0.382  Sum_probs=59.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccC-CCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRL-PGRTDNDVKNYWNTKLKKKLLAGKVSLLTS  127 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l-pgRT~~qcKnRW~~~lkkkl~~~k~s~~~~  127 (319)
                      +..+++++||+|||++|+++|.+||. +|..||+.+ ++||..|||.||..+|+..++++.|+....
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED   75 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE   75 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHH
Confidence            35789999999999999999999996 799999988 599999999999999999999999886543

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.04  E-value=3.3e-10  Score=76.70  Aligned_cols=43  Identities=33%  Similarity=0.697  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHH
Q 045583           70 NFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      +||+||+.+|+.++.++| .+|..||+.+++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.92  E-value=4.1e-10  Score=77.22  Aligned_cols=48  Identities=35%  Similarity=0.758  Sum_probs=44.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      ++.||+|||++|+.++.+||. .+|..||..++ +|++.+|+.||.++++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            478999999999999999995 38999999998 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.78  E-value=2.3e-09  Score=72.47  Aligned_cols=45  Identities=40%  Similarity=0.769  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583           16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      +||+|||++|+.++.+||. .+|..||+.++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~-~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc-CCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            5999999999999999995 48999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.73  E-value=9.8e-09  Score=105.90  Aligned_cols=113  Identities=26%  Similarity=0.330  Sum_probs=90.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHh----CCC------------------CCcccccccccCccccccccc---ccccccCCCCC
Q 045583           13 KRGPWSPEEDATLKRYVETH----GTG------------------GNWIALPQKAGLKRCGKSCRL---RWLNYLRPDIK   67 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~----G~~------------------~~W~~IA~~lg~~Rt~kQCr~---Rw~n~L~p~lk   67 (319)
                      +-+.|++|||+.|.+.|..|    |..                  +-|..|-..++ -|+.+.+..   |-.+.|.+  +
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--~  383 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--K  383 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--c
Confidence            34899999999999999877    221                  12566666776 488888766   33344443  9


Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH--HhcCCCcccccCC
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK--LLAGKVSLLTSNN  129 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk--l~~~k~s~~~~~~  129 (319)
                      +|.||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+++-.  ..++.|+......
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~  446 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEK  446 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHH
Confidence            999999999999999999999999999999 999999999999988765  4778888755443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.34  E-value=4e-08  Score=100.31  Aligned_cols=97  Identities=24%  Similarity=0.618  Sum_probs=85.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCC--CCCCCCCCHHHHHHHHHHHhhhC---
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP--DIKHGNFTEDEDHVICTLYSQIG---   87 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p--~lkrg~WT~EED~~Ll~lv~~~G---   87 (319)
                      .+|.||+||++.|...+.++|.  .|..|.+.++  |-+..||+||.+|...  .+++++|+.||+.+|...+.+.-   
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~~--~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHGG--SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             hhccCccccccccccccccccc--hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence            4789999999999999999997  8999988765  9999999999999998  68889999999999999887432   


Q ss_pred             -----CchhhhcccCCCCCHHHHHHHHHHHh
Q 045583           88 -----SRWSIIASRLPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        88 -----~kWs~IA~~lpgRT~~qcKnRW~~~l  113 (319)
                           ..|..|+..+++|....|+.++....
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                 36999999999999988888775443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.60  E-value=3.2e-05  Score=57.35  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCc---ccccccccCcc-ccccccccccccc
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNW---IALPQKAGLKR-CGKSCRLRWLNYL   62 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W---~~IA~~lg~~R-t~kQCr~Rw~n~L   62 (319)
                      ++-.||+||.++++++|+.+|. ++|   ..|++.++..| |..||+.+...|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~-g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGG-PDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999997 699   99999887667 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.54  E-value=0.00016  Score=53.63  Aligned_cols=47  Identities=17%  Similarity=0.196  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC-ch---hhhcccCC-CC-CHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQIGS-RW---SIIASRLP-GR-TDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~-kW---s~IA~~lp-gR-T~~qcKnRW~~~lk  114 (319)
                      +-.||+||..+++++++.+|. +|   ..|++.+. .| |..||+.|...+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            557999999999999999998 99   99999873 45 99999999876643

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.39  E-value=0.00047  Score=63.13  Aligned_cols=101  Identities=23%  Similarity=0.403  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccC--cccccccccccccccC-CCC--------------------CCCCCC
Q 045583           16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGL--KRCGKSCRLRWLNYLR-PDI--------------------KHGNFT   72 (319)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~--~Rt~kQCr~Rw~n~L~-p~l--------------------krg~WT   72 (319)
                      +|++++|-+|+.+|..-.   +-..|+.-+..  .-|-..+.+||...|. |.+                    .+.+||
T Consensus         1 rW~~~DDl~Li~av~~~~---~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS   77 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN---DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFS   77 (199)
T ss_pred             CCCchhhHHHHHHHHHhc---CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCC
Confidence            699999999999998654   46666554432  3366777889988764 322                    355899


Q ss_pred             HHHHHHHHHHHhhhCC---chhhhcc----cC-CCCCHHHHHHHHHHHhhhHHhc
Q 045583           73 EDEDHVICTLYSQIGS---RWSIIAS----RL-PGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        73 ~EED~~Ll~lv~~~G~---kWs~IA~----~l-pgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      .+|+++|.........   .+.+|=.    .| ++||+.++.++|..+.+..+..
T Consensus        78 ~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   78 KEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            9999999998765433   4666622    23 7899999999998766666554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.35  E-value=0.00017  Score=63.77  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhh---CC----chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583           67 KHGNFTEDEDHVICTLYSQI---GS----RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~---G~----kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      +...||.|||.+|.+.|.+|   |.    -...++..| +||+..|.-|||+.+|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45789999999999999887   33    278899999 999999999999999987654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.21  E-value=0.00013  Score=73.13  Aligned_cols=51  Identities=24%  Similarity=0.548  Sum_probs=46.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583           10 ANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        10 p~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      ..+-...||.+|+-+|+++++.||- |||..||..+| .|+..+|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~-GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGF-GNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCC-CcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3455778999999999999999999 79999999999 999999999998864

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.09  E-value=0.00033  Score=71.57  Aligned_cols=64  Identities=28%  Similarity=0.398  Sum_probs=56.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccccC
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSN  128 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~  128 (319)
                      .++.|-|+.-||+.|..+|.+||. .|++|+..++-.|+.||++||...+...+++-.|+.....
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eede   68 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDE   68 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHH
Confidence            356788999999999999999997 7999999999999999999999999998888777765433

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.95  E-value=0.0011  Score=66.51  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHh
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~l  113 (319)
                      .+-...||.+|+-+|++++..||- +|..||.++..||..+||.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            455678999999999999999995 9999999999999999999997665

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.91  E-value=0.00059  Score=53.22  Aligned_cols=49  Identities=29%  Similarity=0.546  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHHHHHHhh------hC--C------chhhhcccC----CCCCHHHHHHHHHHHhhhH
Q 045583           68 HGNFTEDEDHVICTLYSQ------IG--S------RWSIIASRL----PGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~------~G--~------kWs~IA~~l----pgRT~~qcKnRW~~~lkkk  116 (319)
                      |..||.+|...||+++.+      ++  .      -|..||..|    ..||..||+++|.++.++-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999876      22  1      399999987    3699999999998766554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.77  E-value=0.0004  Score=61.46  Aligned_cols=51  Identities=27%  Similarity=0.566  Sum_probs=42.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC-----CcccccccccCcccccccccccccccCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGG-----NWIALPQKAGLKRCGKSCRLRWLNYLRP   64 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~-----~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p   64 (319)
                      .+.-.||.|||.+|.+.|.+|-..|     .+..|+..++  ||+..|..||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            4677899999999999999994433     3778888875  9999999999999874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.63  E-value=0.00066  Score=68.66  Aligned_cols=46  Identities=24%  Similarity=0.517  Sum_probs=43.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      ....||.+|-.+|++.|+.||.  +|.+||+++| +|+..||-.|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD--dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD--DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh--hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5669999999999999999997  8999999999 99999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.63  E-value=0.0022  Score=66.07  Aligned_cols=47  Identities=15%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      ..+..||++|..+|++++..||..|.+||.++.+||..||--|+..+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            34678999999999999999999999999999999999999998553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.62  E-value=0.0018  Score=65.66  Aligned_cols=45  Identities=13%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      ...||.+|..+|++.+..||..|.+||.|+.+||..||--||-.+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.43  E-value=0.0024  Score=57.16  Aligned_cols=51  Identities=16%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCc-------hhhhcccCCCCCHHHHHHHHHHHhhhHHh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSR-------WSIIASRLPGRTDNDVKNYWNTKLKKKLL  118 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~k-------Ws~IA~~lpgRT~~qcKnRW~~~lkkkl~  118 (319)
                      +...||.|||.+|.+.|..|+..       ...++..| +||..+|..|||.+++++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            46789999999999998888642       56667778 99999999999999987643

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.43  E-value=0.0037  Score=47.58  Aligned_cols=50  Identities=18%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHhhh--------CCc-hhhhcccCC-CCCHHHHHHHHHHHhhhHH
Q 045583           68 HGNFTEDEDHVICTLYSQI--------GSR-WSIIASRLP-GRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~~lp-gRT~~qcKnRW~~~lkkkl  117 (319)
                      +.+||.|||.+|++.|+++        |++ |..+++.-+ .+|-...|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            4589999999999999654        232 999998877 9999999999988887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.40  E-value=0.0014  Score=67.42  Aligned_cols=48  Identities=23%  Similarity=0.562  Sum_probs=44.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      .-.++.||.+|+-+|+++|++||.  +|.+||..+| +|+..||-.++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d--dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD--DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc--cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345789999999999999999997  8999999999 99999999998764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.21  E-value=0.002  Score=49.01  Aligned_cols=52  Identities=35%  Similarity=0.538  Sum_probs=33.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----C--CcccccccccCcccccccccccccccCCC
Q 045583           14 RGPWSPEEDATLKRYVETHGTG-----G--NWIALPQKAGLKRCGKSCRLRWLNYLRPD   65 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~-----~--~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~   65 (319)
                      |.+||.|||+.|+.+|..+...     |  -|.++++.....++..+-|+||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            5689999999999999766321     2  39999887766789999999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.40  E-value=0.0033  Score=56.26  Aligned_cols=51  Identities=25%  Similarity=0.545  Sum_probs=40.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCC-----cccccccccCcccccccccccccccC
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGN-----WIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~-----W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      ..++..||.|||.+|.+.|.+|+..+.     ...++..+  +|+..+|..||+-+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            356788999999999999999976432     44555555  5999999999977765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.25  E-value=0.026  Score=43.22  Aligned_cols=48  Identities=27%  Similarity=0.495  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHhhh-----C------------CchhhhcccC-----CCCCHHHHHHHHHHHhhh
Q 045583           68 HGNFTEDEDHVICTLYSQI-----G------------SRWSIIASRL-----PGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~-----G------------~kWs~IA~~l-----pgRT~~qcKnRW~~~lkk  115 (319)
                      ...||.+|.+.|++++.++     |            .-|..|+..|     +.||..++|.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999876     2            1299999886     369999999999776543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.08  E-value=0.0031  Score=49.09  Aligned_cols=49  Identities=24%  Similarity=0.533  Sum_probs=32.8

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C---C-CC--Ccccccccc---cCccccccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVET--H----G---T-GG--NWIALPQKA---GLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k--~----G---~-~~--~W~~IA~~l---g~~Rt~kQCr~Rw~n~L   62 (319)
                      |..||.+|...|++++..  +    +   . ..  -|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            457999999999999987  1    1   1 01  499999765   56899999999998854

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.60  E-value=0.069  Score=59.65  Aligned_cols=99  Identities=15%  Similarity=0.305  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccc----------------------------------------
Q 045583           16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCR----------------------------------------   55 (319)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr----------------------------------------   55 (319)
                      .|+.-+=..++.++.+||. .+-..||..+. +++...++                                        
T Consensus       826 ~w~~~~f~~f~~~~~~~gr-~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGR-NDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCH-hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888888888889999997 68888988886 56654433                                        


Q ss_pred             --------ccccccc--CCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhccc------------CCCCCHHHHHHHHHHH
Q 045583           56 --------LRWLNYL--RPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASR------------LPGRTDNDVKNYWNTK  112 (319)
Q Consensus        56 --------~Rw~n~L--~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~------------lpgRT~~qcKnRW~~~  112 (319)
                              ..|....  .+..++..||+|||..|+..+.+||- +|..|-..            |..||+.+|..|.+++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                    2332211  12334556999999999999999994 79988332            2589999999999888


Q ss_pred             hhhH
Q 045583          113 LKKK  116 (319)
Q Consensus       113 lkkk  116 (319)
                      ++--
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            7553

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.02  E-value=0.015  Score=56.77  Aligned_cols=50  Identities=22%  Similarity=0.514  Sum_probs=45.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      +----|+..|+-+|+++....|- |+|..||..+| .|+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGl-GNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGL-GNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCC-CcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            33456999999999999999999 79999999999 9999999999998775

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.49  E-value=0.097  Score=44.28  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=40.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC----chhhhcccC------------CCCCHHHHHHHHHHHhhh
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS----RWSIIASRL------------PGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l------------pgRT~~qcKnRW~~~lkk  115 (319)
                      .-++..||++||..|+-.+.+||-    .|..|-..+            ..||+.+|..|-+++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556778999999999999999997    798886542            479999999999888764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.46  E-value=0.066  Score=52.44  Aligned_cols=48  Identities=19%  Similarity=0.390  Sum_probs=42.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~l  113 (319)
                      |-...|+.+|+.+|++.....|- +|..||.++..|+..+||.+|..+.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            33457999999999999999996 8999999998899999999996554

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.38  E-value=0.036  Score=42.46  Aligned_cols=50  Identities=26%  Similarity=0.418  Sum_probs=39.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHh-----CC----------CCCcccccccc----cCccccccccccccccc
Q 045583           13 KRGPWSPEEDATLKRYVETH-----GT----------GGNWIALPQKA----GLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~-----G~----------~~~W~~IA~~l----g~~Rt~kQCr~Rw~n~L   62 (319)
                      ++..||++|.+.|+++|.+|     |.          ...|..|+..+    +..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999987     31          12499998765    23689999999998864

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.12  E-value=0.13  Score=51.60  Aligned_cols=55  Identities=24%  Similarity=0.353  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhccc-----CCC-CCHHHHHHHHHHHhhhHHhcCCC
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASR-----LPG-RTDNDVKNYWNTKLKKKLLAGKV  122 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~-----lpg-RT~~qcKnRW~~~lkkkl~~~k~  122 (319)
                      ...||.||-+.|.++++.|.-+|-.||-+     ++. ||-.++|.||...-++-++.+..
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~  190 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP  190 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence            34699999999999999999999999988     555 99999999999888887765543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.59  E-value=0.15  Score=49.84  Aligned_cols=49  Identities=18%  Similarity=0.340  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHhhh----------CCchhhhcccC----CCCCHHHHHHHHHHHhhhH
Q 045583           68 HGNFTEDEDHVICTLYSQI----------GSRWSIIASRL----PGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~----------G~kWs~IA~~l----pgRT~~qcKnRW~~~lkkk  116 (319)
                      ...|+.+|-..||++..+.          +.-|..||+.+    --||+.+||++|.++.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999997653          34599999965    3499999999998776654

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=91.82  E-value=0.33  Score=49.57  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      -...||.||..++-+++..||.++.+|...||.|+-..+..+|....|.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999999888665443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.60  E-value=0.32  Score=38.16  Aligned_cols=46  Identities=26%  Similarity=0.480  Sum_probs=35.2

Q ss_pred             CCCHHHHHHHHHHHhhh---CC----------chhhhcccC---C--CCCHHHHHHHHHHHhhh
Q 045583           70 NFTEDEDHVICTLYSQI---GS----------RWSIIASRL---P--GRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~---G~----------kWs~IA~~l---p--gRT~~qcKnRW~~~lkk  115 (319)
                      .||+++++.|++++.+.   |+          .|..|++.|   +  ..|..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999997543   22          299998887   2  35789999999665544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=88.99  E-value=0.5  Score=47.36  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           69 GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      .+||.+|-++..++...+|..++.|+..||.|...|||.+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            37999999999999999999999999999999999999999654333

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.16  E-value=1.2  Score=31.44  Aligned_cols=42  Identities=26%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           73 EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        73 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      ++++..++.++...|-.|.+||+.+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            3578888888888999999999999 99999999988766553

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.85  E-value=0.4  Score=46.82  Aligned_cols=48  Identities=29%  Similarity=0.436  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHHh----CC----CCCccccccc---ccCccccccccccccccc
Q 045583           15 GPWSPEEDATLKRYVETH----GT----GGNWIALPQK---AGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~----G~----~~~W~~IA~~---lg~~Rt~kQCr~Rw~n~L   62 (319)
                      ..|+.+|-..|+.+..+.    ..    ..-|..||++   .|.-|++.||+.+|.+..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            789999999999988643    11    1259999974   356799999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-20
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-20
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		5e-20
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-19
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-19
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		9e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		3e-09
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTE 73
           +GPW+ EED  +   V+ +GT   W  L  K    R GK CR RW N+L P++K  ++TE
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTK-QW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74  DEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +ED +I   +  +G+RW+ IA  LPGRTDN VKN+WN+ +K+K+
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
           +GPW+ EED  + + V+ +G    W  + +   LK R GK CR RW N+L P++K  ++T
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73  EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           E+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
           +GPW+ EED  + + V+ +G    W  + +   LK R GK CR RW N+L P++K  ++T
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73  EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           E+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
           +GPW+ EED  +  +V+ +G    W  + +   LK R GK CR RW N+L P++K  ++T
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPK-RWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 73  EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           E+ED +I   + ++G+RW+ IA  LPGRTDN VKN+WN+ +++K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDIKHGNFT 72
           +GPW+ EED  + + V+ +G    W  + +   LK R GK CR RW N+L P++K  ++T
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPK-RWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 73  EDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           E+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL--KRCGKSCRLRWLNYLRPDIKHGNF 71
           +GP++  ED  ++ YV+ +G   NW   P+       R  K CR RW N+L P +    +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAW 57
Query: 72  TEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           T +ED  I   Y ++GS+WS+IA  +PGRTDN +KN WN+ + K++
Sbjct: 58  TPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 13  KRGPWSPEEDATLKRYVETHGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70
           K+  ++PEED  LKR V  HG+    IA   P      R  + CR RW NYL P I H  
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-----NRNARQCRDRWKNYLAPSISHTP 64
Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNT 111
           +T +ED ++     + G +W+IIA   PGRTD  +KN W T
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 40/52 (76%)
Query: 66  IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +K  ++TE+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 65  DIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           ++K  ++TE+ED ++   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 18  SPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDH 77
           + EED  L++ V  +G   +WI + Q   + R  + CR RW NY+ P ++   ++ +ED 
Sbjct: 5   TEEEDLKLQQLVMRYG-AKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 78  VICTLYSQIGSRWSIIASRLPGRTDNDVKNYW 109
           ++   Y++ G +W+ I+  L  R+DN+++N W
Sbjct: 63  LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPD 65
          +GPW+ EED  L + V+ +G    W  + +   LK R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-59
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-59
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-59
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	7e-53
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-52
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	6e-25
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-24
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	5e-20
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	9e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	4e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	9e-05

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  185 bits (473), Expect = 1e-59
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 8   DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIK 67
           +    K+  ++PEED  LKR V  HG+    IA        R  + CR RW NYL P I 
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIA---ATFPNRNARQCRDRWKNYLAPSIS 61

Query: 68  HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS 127
           H  +T +ED ++     + G +W+IIA   PGRTD  +KN W T   K  +     +L  
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

Query: 128 NNANN 132
           ++ ++
Sbjct: 122 HHHHH 126

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  185 bits (473), Expect = 1e-59
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 9   KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH 68
              + +GPW+ EED  +  +V+ +G    W  + +     R GK CR RW N+L P++K 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPK-RWSDIAKHLKG-RIGKQCRERWHNHLNPEVKK 79

Query: 69  GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
            ++TE+ED +I   + ++G+RW+ IA  LPGRTDN VKN+WN+ +++K+
Sbjct: 80  TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  184 bits (470), Expect = 2e-59
 Identities = 42/106 (39%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 12  VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNF 71
           + +GPW+ EED  + + V+ +G    W  + +     R GK CR RW N+L P++K  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 72  TEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           TE+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  182 bits (465), Expect = 2e-58
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 2/104 (1%)

Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTE 73
           +GP++  ED  ++ YV+ +G   NW  +       R  K CR RW N+L P +    +T 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTP 59

Query: 74  DEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +ED  I   Y ++GS+WS+IA  +PGRTDN +KN WN+ + K++
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  170 bits (432), Expect = 7e-53
 Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 2/107 (1%)

Query: 11  NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70
            + +GPW+ EED  + + V+ +G    W  + +     R GK CR RW N+L P++K  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 112

Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +TE+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  166 bits (422), Expect = 4e-52
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 14  RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTE 73
           +  ++ EED  L++ V  +G   +WI + Q     R  + CR RW NY+ P ++   ++ 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAK-DWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSP 58

Query: 74  DEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
           +ED ++   Y++ G +W+ I+  L  R+DN+++N W    + + 
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 93.7 bits (234), Expect = 6e-25
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
          + +GPW+ EED  L + V+ +G    W  + +     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.7 bits (231), Expect = 3e-24
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGN 70
          + K G W   ED  LK  V  +G    W  +      ++  K C+ RW  +L P IK   
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKN-QWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 71 FTEDE 75
          ++   
Sbjct: 64 WSGPS 68

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.1 bits (201), Expect = 5e-20
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
          + +  W+ EED  LK+ VE +GT  +W  +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 11 NVKRGPWSPEEDATLKRYVETHGTGGNW--IA--LPQKAGLKRCGKSCRLRWLNYLRPDI 66
          +  +  W+ EED  L+  V   G   +W  +A   P      R  + C+ RWL  L    
Sbjct: 5  SSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFPN-----RTDQQCQYRWLRVLSGPS 58

Query: 67 K 67
           
Sbjct: 59 S 59

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLR 63
          KR  W  EED  L+  V  +G  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 61/396 (15%), Positives = 104/396 (26%), Gaps = 135/396 (34%)

Query: 8   DKANVKRGPWSPEEDATLKR---------YVETHGTGGNWIALPQKAGLKRCGKSC---- 54
            K NV R     +    L++          V   G  G              GK+     
Sbjct: 127 AKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLG-------------SGKTWVALD 169

Query: 55  -------------RLRWLNYLRPDIKHGNFTEDEDHVIC--TLYSQIGSRWSI---IASR 96
                        ++ WLN         N    E  +     L  QI   W+     +S 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 97  LPGRTDN----------------------DVKNYWNTKLKKKLLAG-KVSLLTSNNANNS 133
           +  R  +                      +V    N K         K+ LLT+     +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKI-LLTTRFKQVT 278

Query: 134 PIISGSNPTDTNHLHDSNPSISLPKSEA---------CDPQYPASPTQ-LSSSP---SM- 179
             +S +  T   H+   + S++L   E          C PQ    P + L+++P   S+ 
Sbjct: 279 DFLSAATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSII 333

Query: 180 -PLLTDHHDHIAYGLSTVNNHHFIPPHSAGMSFTSSTVSHQLGTSLKN-SPVLTSSQEGS 237
              + D           VN                  ++  + +SL    P         
Sbjct: 334 AESIRDGLATWDN-WKHVNC---------------DKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 238 SVTLPAGNNV----------NGGVEDADQI---LMDFGFGIGDPCDQYYVNNNGTLWYN- 283
               P   ++          +    D   +   L  +      P +      +  L    
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 284 HQEKATSHHDDLSNWYPSLLAADSSYADIKPQGLNQ 319
             E   + H  + + Y      DS   D+ P  L+Q
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQ 471

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 8  DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIK 67
            ++ K+  WS EE+  L    +   T   W  +    G  R    C   +   L    +
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQ 58

Query: 68 HGN 70
            +
Sbjct: 59 RDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 66  IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKL 117
            K   ++ +E+  +  L   + ++W  IA  + GRT      ++   L K  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAA 57

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDI 66
          K+  W+ EE   +K  V+ +G  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDI 66
          K+  W+ EE   +K  V+ +G  GNW A+ +      R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIA-LPQKAGLKRCGKSCRLRWLNYLRPDI 66
          KR  W  EED  L+  V  +G  GNW   L       R     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 67  KHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLKKKLLA 119
           K   +  +ED  + +   + G   WS I        RT   +K+ W T  K KL++
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 13  KRGPWSPEEDATLKRYVETHGTGGNWIA---LPQKAGLKRCGKSCRLRWLNYLR-----P 64
            R P++  E   L   VE  GT G W        +    R     + +W   +      P
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 88

Query: 65  DIKHGNFTEDE-DHVICTLYSQIGSRWS 91
             + G     E    +    +      S
Sbjct: 89  QQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----P 64
           R P+S  E   L + VE  GT G W  +   A      R     + +W   +      P
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 70

Query: 65 DIKHGNFTEDE-DHVICTLYSQIGSRWS 91
            + G     E  + +   +     +  
Sbjct: 71 QQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 55  RLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK 114
                +  R ++    +TE+E         + G  WS IA  +  +T +  KN++    K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF-NYK 61

Query: 115 KKL 117
           K+ 
Sbjct: 62  KRQ 64

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHG 69
            G ++PEE   LK     H  G +W  +    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKH--GNDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 16 PWSPEEDATLKRYVETHGTGGNWIALPQKA---GLKRCGKSCRLRWLNYLR 63
          P+S  E   L   VE  GT G W  +  +A      R     + +W   + 
Sbjct: 2  PFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK---RCGKSCRLRWLNYLR 63
           R P+S  E   L   VE  GT G W  +  +A      R     + +W   + 
Sbjct: 16 IRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62
              W+ +E+  L   V   G  GNW  +  +    +  + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYF 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.73
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.65
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.57
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.57
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.51
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.22
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.44
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.41
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.4
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.39
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.37
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.35
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.33
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.29
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.27
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.26
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.91
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.21
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.21
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.95
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.94
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.9
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.8
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.72
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.69
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.6
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.49
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.46
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.43
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.3
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.26
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.19
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.15
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.12
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.09
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.98
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.12
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.84
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.8
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.77
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.6
2crg_A	70	Metastasis associated protein MTA3; transcription	97.57
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.43
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.22
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.17
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.09
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.07
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.76
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.56
2crg_A	70	Metastasis associated protein MTA3; transcription	96.49
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.44
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.35
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.46
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.1
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.6
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.8
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.79
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	87.16
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.94

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.2e-33  Score=229.25  Aligned_cols=105  Identities=40%  Similarity=0.853  Sum_probs=99.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCch
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRW   90 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW   90 (319)
                      .+++|+||+|||++|+++|++||. .+|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||.+|
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W   78 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW   78 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence            478999999999999999999998 58999999997 9999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583           91 SIIASRLPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        91 s~IA~~lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      +.||+.|||||+++||+||+.++++++
T Consensus        79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           79 AEIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=7.1e-33  Score=233.61  Aligned_cols=110  Identities=36%  Similarity=0.748  Sum_probs=104.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhh
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSI   92 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~   92 (319)
                      .||+||+|||++|+++|.+||. ++|..||..++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   78 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSV   78 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHH
Confidence            3799999999999999999997 58999999998 999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHhhhHHhcCCCcc
Q 045583           93 IASRLPGRTDNDVKNYWNTKLKKKLLAGKVSL  124 (319)
Q Consensus        93 IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~  124 (319)
                      ||+.|||||+++||+||+.++++++..+.+..
T Consensus        79 Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~  110 (131)
T 3zqc_A           79 IAKLIPGRTDNAIKNRWNSSISKRISTNSNHK  110 (131)
T ss_dssp             HTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence            99999999999999999999999988766544

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=2.9e-33  Score=228.45  Aligned_cols=104  Identities=28%  Similarity=0.614  Sum_probs=99.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhh
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSII   93 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~I   93 (319)
                      ||+||+|||++|+++|++||. .+|..||..++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.|
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I   78 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI   78 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence            689999999999999999997 58999999998 9999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583           94 ASRLPGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        94 A~~lpgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      |+.|||||+++||+||+.++++....
T Consensus        79 a~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           79 SKFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            99999999999999999998886543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=7.3e-33  Score=232.28  Aligned_cols=106  Identities=39%  Similarity=0.726  Sum_probs=101.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG   87 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G   87 (319)
                      .++.++||+||+|||++|+++|.+||.  +|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            578899999999999999999999997  8999999998 9999999999999999999999999999999999999999


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           88 SRWSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                      .+|+.||+.|||||+++||+||+.++++.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888773

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=1e-32  Score=231.45  Aligned_cols=108  Identities=40%  Similarity=0.816  Sum_probs=102.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG   87 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G   87 (319)
                      .+|++++|+||+|||++|+++|++||. .+|..||..++ +|+++||++||.++|+|.+++++||+|||++|++++.+||
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            468999999999999999999999997 58999999998 9999999999999999999999999999999999999999


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583           88 SRWSIIASRLPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      ++|+.||+.|||||+++||+||+.++++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.6e-30  Score=225.37  Aligned_cols=108  Identities=39%  Similarity=0.821  Sum_probs=102.4

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG   87 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G   87 (319)
                      .+|.+++++||+|||++|+++|.+||. .+|..||..++ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            468899999999999999999999997 48999999997 9999999999999999999999999999999999999999


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583           88 SRWSIIASRLPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        88 ~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      ++|+.||+.|||||+++||+||+.++++++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.9e-30  Score=223.68  Aligned_cols=114  Identities=29%  Similarity=0.631  Sum_probs=70.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC-ch
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS-RW   90 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW   90 (319)
                      +++++||+|||++|+++|++||. ++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            67999999999999999999997 58999999998 99999999999999999999999999999999999999996 79


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583           91 SIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS  127 (319)
Q Consensus        91 s~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~  127 (319)
                      ..||+.|||||+.||++||..++.+.+.++.|+....
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd  118 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED  118 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHH
Confidence            9999999999999999999999999888888876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=2.2e-21  Score=162.42  Aligned_cols=86  Identities=24%  Similarity=0.524  Sum_probs=61.1

Q ss_pred             ccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583           41 LPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        41 IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      ||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||..+|.+.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            677787 99999999999999999999999999999999999999996 6999999999999999999999999999888


Q ss_pred             CCCccccc
Q 045583          120 GKVSLLTS  127 (319)
Q Consensus       120 ~k~s~~~~  127 (319)
                      +.|+....
T Consensus        80 ~~WT~eEd   87 (128)
T 1h8a_C           80 TSWTEEED   87 (128)
T ss_dssp             SCCCHHHH
T ss_pred             ccCCHHHH
Confidence            88886543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-21  Score=148.05  Aligned_cols=67  Identities=27%  Similarity=0.586  Sum_probs=63.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHH
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDED   76 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED   76 (319)
                      ..+.+++|+||+|||++|+++|.+||. .+|..||+.++ +|+++|||+||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            357899999999999999999999996 59999999998 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.73  E-value=1.9e-18  Score=158.62  Aligned_cols=107  Identities=18%  Similarity=0.257  Sum_probs=92.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCC----CcccccccccCcccccccccccccccCCCCC-----------------
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGG----NWIALPQKAGLKRCGKSCRLRWLNYLRPDIK-----------------   67 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~----~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lk-----------------   67 (319)
                      .+.++|++||+|||++|+++|.++|...    .|..||+.|+ +||+.|||.||..+|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4568899999999999999999998721    2999999998 99999999999999999996                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHhh-h--------------------------------CC--------------
Q 045583           68 ------------HGNFTEDEDHVICTLYSQ-I--------------------------------GS--------------   88 (319)
Q Consensus        68 ------------rg~WT~EED~~Ll~lv~~-~--------------------------------G~--------------   88 (319)
                                  +..||.|||-.|+..+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999998876 1                                11              


Q ss_pred             -----------chhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           89 -----------RWSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        89 -----------kWs~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                                 .|..||+.+|+||.+.+|+||+..++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999888765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=3.2e-18  Score=131.45  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=47.1

Q ss_pred             ccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 045583           55 RLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        55 r~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~l  113 (319)
                      --||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999997643

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=7e-18  Score=141.03  Aligned_cols=84  Identities=20%  Similarity=0.240  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---CcccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----PDIKHG-NFTEDEDHV   78 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L~-----p~lkrg-~WT~EED~~   78 (319)
                      .++..++++||+|||+.|+++|++||. ++|..|++.+.   .+||+.+|++||.++|+     |.++++ +|++||+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            457889999999999999999999998 69999998852   48999999999999998     999999 999999999


Q ss_pred             HHHHHhhhCCchhh
Q 045583           79 ICTLYSQIGSRWSI   92 (319)
Q Consensus        79 Ll~lv~~~G~kWs~   92 (319)
                      |++++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.1e-17  Score=122.04  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583           61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~  120 (319)
                      +|+|.+++++||+|||++|+++++++|.+|..||+ ++|||+.|||+||+.++++.+.++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            79999999999999999999999999999999999 889999999999999999988765

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.2e-16  Score=121.57  Aligned_cols=58  Identities=22%  Similarity=0.283  Sum_probs=55.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhc
Q 045583           62 LRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        62 L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      ++|.+++++||+|||++|++++.+||.+|..||++|||||++|||+||+.++++++..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998665

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=3.8e-17  Score=119.95  Aligned_cols=57  Identities=26%  Similarity=0.556  Sum_probs=53.7

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCC
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIK   67 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lk   67 (319)
                      .|.+++++||+|||++|+++|.+||. .+|..||+.++ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            57899999999999999999999996 48999999998 99999999999999999876

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.64  E-value=7e-17  Score=135.14  Aligned_cols=80  Identities=20%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---Cccccccccccccccc-----CCCCCCCCCCHHH-HHHH
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPDIKHGNFTEDE-DHVI   79 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EE-D~~L   79 (319)
                      +...++++||+|||+.|+++|++||. ++|..|++...   .+||+.||++||.|++     +|.++++.|+++| +++|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999998 69999998641   4899999999999999     8999999999999 8999


Q ss_pred             HHHHhhhCCc
Q 045583           80 CTLYSQIGSR   89 (319)
Q Consensus        80 l~lv~~~G~k   89 (319)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999985

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=5.9e-17  Score=115.70  Aligned_cols=52  Identities=38%  Similarity=0.841  Sum_probs=49.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD   65 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~   65 (319)
                      +++|+||+|||++|+++|.+||. .+|..||+.++ +|+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            57999999999999999999997 58999999998 999999999999999984

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.9e-16  Score=119.66  Aligned_cols=63  Identities=24%  Similarity=0.318  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccc
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLL  125 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~  125 (319)
                      .|.+++++||+|||++|+++|.+|| .+|..||.+|+|||+.|||+||+.+|++.+.++.|+..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e   67 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP   67 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence            4688999999999999999999999 79999999999999999999999999999999999864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=9.9e-17  Score=121.05  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=58.6

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccC-cccccccccccccccCCCCCCCCCC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLRPDIKHGNFT   72 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~-~Rt~kQCr~Rw~n~L~p~lkrg~WT   72 (319)
                      .++..++++||+|||++|+++|++||. ++|..||+.++. +|++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            467789999999999999999999997 599999999875 8999999999999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=2.8e-16  Score=115.28  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhHH
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      .|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.|||+||+.+|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 599999999999999999999999987754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=9.5e-17  Score=114.48  Aligned_cols=52  Identities=33%  Similarity=0.738  Sum_probs=47.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD   65 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~   65 (319)
                      +++++||+|||++|+++|++||. ++|..||+.++ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            57999999999999999999998 58999999998 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=1.1e-15  Score=108.93  Aligned_cols=50  Identities=32%  Similarity=0.617  Sum_probs=46.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+.+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999998 999999999999999999999998864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.57  E-value=2.1e-15  Score=107.53  Aligned_cols=50  Identities=32%  Similarity=0.713  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999998 699999999999999999999988764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.57  E-value=4.4e-16  Score=116.46  Aligned_cols=56  Identities=27%  Similarity=0.477  Sum_probs=49.4

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc-CcccccccccccccccCCCCC
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPDIK   67 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg-~~Rt~kQCr~Rw~n~L~p~lk   67 (319)
                      ..+|++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||.++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            357899999999999999999998 58999998764 379999999999999999874

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.57  E-value=2.7e-15  Score=113.12  Aligned_cols=61  Identities=25%  Similarity=0.310  Sum_probs=55.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhHHhcCC
Q 045583           61 YLRPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLKKKLLAGK  121 (319)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcKnRW~~~lkkkl~~~k  121 (319)
                      ...+..++++||+|||++|+++|.+|| .+|+.||..|+  |||+.|||+||+.+|++.+.++.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~   66 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD   66 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence            345678899999999999999999999 59999999999  99999999999999999876543

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=4.4e-15  Score=106.50  Aligned_cols=50  Identities=28%  Similarity=0.371  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhH
Q 045583           67 KHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcKnRW~~~lkkk  116 (319)
                      ++++||+|||++|+++|.+|| .+|+.||..|+  |||+.||++||+.+++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            578999999999999999999 59999999999  999999999999988753

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.54  E-value=1.4e-15  Score=111.95  Aligned_cols=56  Identities=18%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCC
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDI   66 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~l   66 (319)
                      .+++++++||+|||++|+++|++||. ++|..||+.++ +|+++||++||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            46899999999999999999999996 59999999998 9999999999999998653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=4.8e-15  Score=109.03  Aligned_cols=53  Identities=11%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      .+.+.+++||+|||++|+++|.+|| .+|..||++|+|||+.|||+||+.++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3678999999999999999999999 7999999999999999999999988753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.9e-15  Score=113.82  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhC------CchhhhcccCCCCCHHHHHHHHHHHhhhHHhcC
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIG------SRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~  120 (319)
                      +|.+.+++||+|||++|++++.+||      .+|..||++|+|||+.||++||+.+|++.++.|
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999      799999999999999999999999998876655

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.5e-16  Score=114.84  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=53.3

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHG   69 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg   69 (319)
                      ..|.+++++||+|||++|+++|++||.  +|..||+ +. +|+++||+.||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            578999999999999999999999997  8999999 55 6999999999999999877654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2.2e-15  Score=115.17  Aligned_cols=62  Identities=18%  Similarity=0.295  Sum_probs=55.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC----CCcccccccccCcccccccccccccccCCCCCCCC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGN   70 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~----~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~   70 (319)
                      .+|.+++++||+|||++|+++|.+||..    .+|..||+.++ +||++||+.||.++|.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999941    38999999998 99999999999999998777664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.49  E-value=4.1e-15  Score=106.62  Aligned_cols=50  Identities=30%  Similarity=0.499  Sum_probs=46.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccccccC-cccccccccccccccC
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLR   63 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~-~Rt~kQCr~Rw~n~L~   63 (319)
                      ++++||+|||++|+++|++||. ++|..||..++. +|++.||++||.++|+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999997 599999999875 6999999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=2.3e-14  Score=107.08  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=46.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCC--CCCHHHHHHHHHHHhhhHH
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLP--GRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lp--gRT~~qcKnRW~~~lkkkl  117 (319)
                      ..++++||+|||++|+++|.+||. +|+.||+.++  |||+.|||+||++++|..+
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            357899999999999999999995 8999999865  9999999999999887643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=7.6e-15  Score=107.42  Aligned_cols=52  Identities=27%  Similarity=0.493  Sum_probs=47.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583           10 ANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        10 p~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      ..+.+++||+|||++|+++|++||. ++|..||+.++.+|+++|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999997 599999999987899999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.22  E-value=3e-15  Score=118.65  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=53.1

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           61 YLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                      .+.|.+++++||+|||++|++++.+||.+|+.||.+|+|||++|||+||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56789999999999999999999999999999999999999999999999988774

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=3.9e-14  Score=103.60  Aligned_cols=51  Identities=18%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhC-CchhhhcccCC-CCCHHHHHHHHHHHh
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP-GRTDNDVKNYWNTKL  113 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~qcKnRW~~~l  113 (319)
                      ...+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.||++||..++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3457789999999999999999999 79999999999 999999999998764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.44  E-value=1.2e-14  Score=110.47  Aligned_cols=58  Identities=16%  Similarity=0.301  Sum_probs=54.0

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH   68 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkr   68 (319)
                      ..|.+++++||+|||++|+++|++||.  +|..||+.++ +|++.||+.||.++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999998  8999999998 999999999999999877665

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.41  E-value=1.8e-13  Score=114.20  Aligned_cols=66  Identities=23%  Similarity=0.417  Sum_probs=60.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccccC
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSN  128 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~  128 (319)
                      .+..++++||+|||++|+++|.+||.+|..||+.|+|||..||+.||..+|...+.++.|+.....
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~   71 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA   71 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999876543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.40  E-value=1.7e-13  Score=110.47  Aligned_cols=63  Identities=25%  Similarity=0.546  Sum_probs=57.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS  127 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~  127 (319)
                      ++++++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.++.|+....
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd   64 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED   64 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHH
Confidence            478999999999999999999997 799999999999999999999999999888888886543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.39  E-value=1.4e-13  Score=112.35  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=67.8

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc---Cccccccccccccccc-----CCCCCCCCCCHHHHHH
Q 045583            7 CDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPDIKHGNFTEDEDHV   78 (319)
Q Consensus         7 c~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EED~~   78 (319)
                      -.+...++++||+|||+.|+++|++||. ++|..|++.+.   .+||+.+|++||.+++     +|.++++.-+++|-..
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~   84 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN   84 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence            3567889999999999999999999998 69999998652   4899999999999999     6899999888877666


Q ss_pred             -HHHHHhhhCC
Q 045583           79 -ICTLYSQIGS   88 (319)
Q Consensus        79 -Ll~lv~~~G~   88 (319)
                       +++|+..+|+
T Consensus        85 rv~~~~~~~~~   95 (105)
T 2aje_A           85 RVLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             7777766543

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=3.6e-13  Score=103.25  Aligned_cols=51  Identities=14%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           64 PDIKHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      +.+.+++||.|||++|++++.+||    .+|.+||++|||||+.||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            567889999999999999999999    689999999999999999999987764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-13  Score=105.67  Aligned_cols=58  Identities=21%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCC
Q 045583            6 CCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH   68 (319)
Q Consensus         6 cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkr   68 (319)
                      -...|.+++++||+|||++|+++|++||.  +|..||+.+  +|++.||+.||.. |....+.
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            34679999999999999999999999998  699999998  7999999999974 5544443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.35  E-value=4e-13  Score=105.40  Aligned_cols=69  Identities=23%  Similarity=0.366  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccc----ccCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHh
Q 045583           15 GPWSPEEDATLKRYVETHGTGGNWIALPQK----AGLKRCGKSCRLRWLNYL-----RPDIKHG-NFTEDEDHVICTLYS   84 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~----lg~~Rt~kQCr~Rw~n~L-----~p~lkrg-~WT~EED~~Ll~lv~   84 (319)
                      ++||+|||+.|+++|++||. ++|..|++.    +. +||+.+|++||.++|     +|.++++ +..+++..+++.++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998 699999985    55 899999999999998     5776665 677777788888876


Q ss_pred             h
Q 045583           85 Q   85 (319)
Q Consensus        85 ~   85 (319)
                      .
T Consensus        79 ~   79 (83)
T 2ckx_A           79 Y   79 (83)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.33  E-value=3.6e-13  Score=113.01  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=61.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIG   87 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G   87 (319)
                      ..|.+++|+||+|||++|+++|.+||.  +|..||+.++ +|++.||+.||.++|++.+..++|+.+-    +......+
T Consensus        48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk  120 (131)
T 3zqc_A           48 LDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK  120 (131)
T ss_dssp             TSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence            458899999999999999999999997  8999999998 9999999999999999999999988753    11122334


Q ss_pred             CchhhhcccC
Q 045583           88 SRWSIIASRL   97 (319)
Q Consensus        88 ~kWs~IA~~l   97 (319)
                      .+|+.|++.|
T Consensus       121 ~~~~~i~k~~  130 (131)
T 3zqc_A          121 RKAADVPKKL  130 (131)
T ss_dssp             ----------
T ss_pred             hhhhhcchhc
Confidence            5788888765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.32  E-value=9.5e-13  Score=106.84  Aligned_cols=60  Identities=23%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCccccc
Q 045583           68 HGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTS  127 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~  127 (319)
                      +++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.++.|+....
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd   61 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED   61 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHH
Confidence            579999999999999999997 899999999999999999999999999999999886543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=5.9e-13  Score=103.40  Aligned_cols=54  Identities=20%  Similarity=0.402  Sum_probs=49.7

Q ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583            5 PCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus         5 ~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      ..+.++...+++||+|||++|+++|++||.  +|..||+.++ +|++.||+.||.++
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A            9 LAKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             cCCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            345677888999999999999999999994  9999999999 89999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-12  Score=101.82  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      ...+++||+|||++|++++.+||.+|..||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999644

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.27  E-value=5.1e-12  Score=93.81  Aligned_cols=50  Identities=18%  Similarity=0.332  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCchhhhc---ccCCCCCHHHHHHHHHHHhhh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGSRWSIIA---SRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA---~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      -++.+||+|||+.|+++|++||.+|+.|+   ..+++||+.++|+||+.++|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            36789999999999999999999999999   577999999999999888765

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.26  E-value=2.9e-12  Score=117.70  Aligned_cols=55  Identities=25%  Similarity=0.481  Sum_probs=49.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhHHh
Q 045583           64 PDIKHGNFTEDEDHVICTLYSQIGSR------WSIIASRLPGRTDNDVKNYWNTKLKKKLL  118 (319)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcKnRW~~~lkkkl~  118 (319)
                      +.+++++||+|||++|+++|+++|++      |..||+.|||||+++||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            45788999999999999999999885      99999999999999999999999999876

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.91  E-value=5.2e-13  Score=105.72  Aligned_cols=54  Identities=28%  Similarity=0.545  Sum_probs=50.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCC
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP   64 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p   64 (319)
                      ..|.+++|+||+|||++|+++|.+||.  +|..||..++ +||+.||+.||.++|+.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            468899999999999999999999998  7999999998 99999999999999864

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=5.6e-12  Score=98.85  Aligned_cols=49  Identities=24%  Similarity=0.432  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhHH
Q 045583           69 GNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      .+||+|||++|+++|.+||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999998 99999996    899999999999999997653

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=4.6e-12  Score=105.85  Aligned_cols=55  Identities=24%  Similarity=0.394  Sum_probs=50.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhH
Q 045583           62 LRPDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        62 L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkk  116 (319)
                      +.+..++++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456788999999999999999999998 99999998    49999999999999999853

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-11  Score=100.99  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCC-chhhhcccC----CCCCHHHHHHHHHHHhhhH
Q 045583           64 PDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASRL----PGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----pgRT~~qcKnRW~~~lkkk  116 (319)
                      +..++++||+|||++|+++|.+||. +|+.|++.+    +|||+.+||+||+++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4678899999999999999999998 999999975    8999999999999998754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.21  E-value=2.4e-12  Score=98.63  Aligned_cols=57  Identities=14%  Similarity=0.343  Sum_probs=50.8

Q ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHhCCC--CCcccccccccCcccccccccccccccC
Q 045583            6 CCDKANVKRGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus         6 cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~--~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      ...++...+++||+|||++|++++.+||..  .+|..||+.|+ +||.+||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            456788899999999999999999999831  37999999998 9999999999998765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.21  E-value=1.6e-11  Score=98.27  Aligned_cols=50  Identities=18%  Similarity=0.360  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           67 KHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                      .+++||.|||++|++++.+||    ++|.+||++|||||+++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999887663

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=3.9e-11  Score=100.33  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=48.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhH
Q 045583           64 PDIKHGNFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkk  116 (319)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457899999999999999999998 99999986    48999999999999999754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=8.6e-10  Score=81.25  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      ..++||+||++++++++.+||.+|..||..||+||..+|..+|....|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999966543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.94  E-value=8.6e-10  Score=88.13  Aligned_cols=66  Identities=18%  Similarity=0.219  Sum_probs=59.5

Q ss_pred             ccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccC-----CCCCHHHHHHHHHHHhhhHHhcC
Q 045583           51 GKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRL-----PGRTDNDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        51 ~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----pgRT~~qcKnRW~~~lkkkl~~~  120 (319)
                      ..=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+.++     ++||..++|+||..+.++.+..+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35678999999976    89999999999999999999999999999     58999999999999888876654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.90  E-value=3.2e-10  Score=90.60  Aligned_cols=48  Identities=15%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--CCcccccccccCccccccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~--~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      +++||+|||++|.+++.+||.+  ..|..||+.++ +||.+||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            6789999999999999999742  47999999998 999999999998875

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.80  E-value=4.2e-09  Score=80.34  Aligned_cols=50  Identities=22%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      ..+.+.||.||+++|.+++.+|+    .+|.+||..| |||..+|++||..+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    6899999998 99999999999877654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.72  E-value=9.7e-09  Score=93.72  Aligned_cols=49  Identities=14%  Similarity=0.294  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      ...+||+||++++++++.+||++|..||+.|++||..|||++|+...++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999877665

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.69  E-value=4.1e-09  Score=78.16  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=44.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCccccc---ccccCcccccccccccccccCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALP---QKAGLKRCGKSCRLRWLNYLRP   64 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA---~~lg~~Rt~kQCr~Rw~n~L~p   64 (319)
                      ..+.+||+|||+.|+++|++||.  +|..|+   ..+. +|+...+++||+++.+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence            46899999999999999999997  899999   4544 89999999999998653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.2e-08  Score=74.99  Aligned_cols=52  Identities=13%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      .+.....++||+||++++.+++.+||.  +|..||..++ +|+..||+.+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            445566799999999999999999996  8999999998 999999999996654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.49  E-value=1.2e-07  Score=72.63  Aligned_cols=49  Identities=12%  Similarity=0.285  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      ....||.+|+++|.+++..|+.    +|..||..+||||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            3468999999999999999974    799999999999999999999876544

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.46  E-value=7.9e-08  Score=96.32  Aligned_cols=46  Identities=15%  Similarity=0.305  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           69 GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      ..||+||.+++++++.+||.+|..||+.+.+||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999975443

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.43  E-value=3.2e-08  Score=75.48  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccccccC
Q 045583           10 ANVKRGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        10 p~lkkg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      +..+++.||+|||++|.+++.+|+.  .+.|..||+.+|  |+.++|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            4456789999999999999999973  247999999975  999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.30  E-value=5.7e-07  Score=65.92  Aligned_cols=47  Identities=21%  Similarity=0.373  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHhhh--------CC-chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQI--------GS-RWSIIAS-RLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~--------G~-kWs~IA~-~lpgRT~~qcKnRW~~~lk  114 (319)
                      +.+||+|||.+|++.|.++        |+ -|..+++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        55 4999999 8999999999999987764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.26  E-value=1.5e-07  Score=69.01  Aligned_cols=48  Identities=25%  Similarity=0.466  Sum_probs=42.3

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCCcccccc-cccCcccccccccccccccC
Q 045583           14 RGPWSPEEDATLKRYVETH--------GTGGNWIALPQ-KAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~--------G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      |.+||+|||+.|+++|.+|        |. .-|..+++ .++ .++..+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        43 36999999 676 9999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.19  E-value=3.2e-07  Score=70.20  Aligned_cols=50  Identities=18%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccccccCC
Q 045583           14 RGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLRP   64 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p   64 (319)
                      ...||+||+++|.+++..|+.  .++|..||..++ +|+..+|+.||...++-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            467999999999999999964  257999999999 89999999999887653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.15  E-value=5.9e-07  Score=82.03  Aligned_cols=51  Identities=18%  Similarity=0.330  Sum_probs=46.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583           10 ANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        10 p~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      ......+||+||++++++++.+||.  +|..||+.++ +||..||+.+|.++.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3455789999999999999999997  8999999999 9999999999988764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=4.4e-06  Score=61.73  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGSRWSIIAS-RLPGRTDNDVKNYWNT  111 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcKnRW~~  111 (319)
                      .|.++...||+||.++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            467888999999999999999999999999999 5899999999998853

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.09  E-value=1.2e-06  Score=67.00  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHH
Q 045583           68 HGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYW  109 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW  109 (319)
                      ...||.||+++|.+++..|+.    +|.+||..|||||..+|+.+|
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            457999999999999999975    899999999999999999988

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.98  E-value=5.4e-06  Score=65.66  Aligned_cols=46  Identities=24%  Similarity=0.436  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHhhhCC---chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           70 NFTEDEDHVICTLYSQIGS---RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      .||.|||+.|+...++-|.   .|..||+.|.+|+.+||++||+.+++=
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6999999999999999987   899999999999999999999887754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.12  E-value=1.6e-06  Score=65.26  Aligned_cols=44  Identities=23%  Similarity=0.427  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHhhhCC---chhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           70 NFTEDEDHVICTLYSQIGS---RWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      .||.|||+.|+..+.+-|.   .|..||+.| +||++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999998   899999999 9999999999987764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.84  E-value=2.7e-05  Score=61.99  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             cccccccCCCCCCCCCCHHHHHHHHHHHhhhCCchhhhcccCC-----CCCHHHHHHHHHHHhhhHHhcC
Q 045583           56 LRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSRWSIIASRLP-----GRTDNDVKNYWNTKLKKKLLAG  120 (319)
Q Consensus        56 ~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lp-----gRT~~qcKnRW~~~lkkkl~~~  120 (319)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+.++.     .||-.++|.||..+.++.+...
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34555554    3689999999999999999999999999873     7999999999999888876644

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.80  E-value=3.1e-05  Score=73.64  Aligned_cols=99  Identities=15%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccc-------cc-----------------------------
Q 045583           15 GPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRL-------RW-----------------------------   58 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~-------Rw-----------------------------   58 (319)
                      +.||..+...++.++.+||. .+|..||..++ +++...++.       ||                             
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999998 69999999997 777644432       11                             


Q ss_pred             ------------cc--ccCCCCCCCCCCHHHHHHHHHHHhhhCC----chhhhcc------------cCCCCCHHHHHHH
Q 045583           59 ------------LN--YLRPDIKHGNFTEDEDHVICTLYSQIGS----RWSIIAS------------RLPGRTDNDVKNY  108 (319)
Q Consensus        59 ------------~n--~L~p~lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~lpgRT~~qcKnR  108 (319)
                                  ..  ...+..+...||++||..|+-.+.+||-    .|..|..            .+..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                        00  0012234568999999999999999996    6999962            3467999999999


Q ss_pred             HHHHhhh
Q 045583          109 WNTKLKK  115 (319)
Q Consensus       109 W~~~lkk  115 (319)
                      .+++++-
T Consensus       269 c~tLi~~  275 (304)
T 1ofc_X          269 CNTLITL  275 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.77  E-value=4.5e-06  Score=63.75  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--CCCcccccccccCcccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVETHGT--GGNWIALPQKAGLKRCGKSCRLRWL   59 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~--~~~W~~IA~~lg~~Rt~kQCr~Rw~   59 (319)
                      ...||.||+++|.+++.+|+.  ...|..||+.++ +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            457999999999999999954  347999999998 899999999985

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.60  E-value=7e-05  Score=59.55  Aligned_cols=44  Identities=20%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHH
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNT  111 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~  111 (319)
                      ...||+||.++..++...||.+|..||..||+||..+|-.+|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998854

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.57  E-value=0.00011  Score=55.41  Aligned_cols=43  Identities=14%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcc-cCCCCCHHHHHHHHH
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIAS-RLPGRTDNDVKNYWN  110 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcKnRW~  110 (319)
                      ...||+||.++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999999999999 599999999999986

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=6e-05  Score=55.61  Aligned_cols=50  Identities=8%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccc-cccCccccccccccccc
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQ-KAGLKRCGKSCRLRWLN   60 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n   60 (319)
                      ..|.++...||+||-++..+++.+||.  +|..|++ .++ +|+..+|..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            367888999999999999999999998  8999998 577 9999999887654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.22  E-value=9.4e-05  Score=58.94  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCccccccccc----CcccccccccccccccC
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG----LKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg----~~Rt~kQCr~Rw~n~L~   63 (319)
                      ....||.||++.|++++++|+.  .|..|+.+..    .+|+..++++||..+.+
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            4489999999999999999998  8999999883    37999999999977543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.17  E-value=0.00013  Score=73.22  Aligned_cols=49  Identities=16%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      .....+||.||-+++++++.+||.  +|..||+.++ +|+..||+..|.++.
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            345789999999999999999997  8999999999 999999999887653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.09  E-value=0.00014  Score=57.61  Aligned_cols=52  Identities=15%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCC-CCCcccccccccCcccccccccccccc
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGT-GGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~-~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      +++-+-..||.|||..|+..+++-|. ...|..||+.++ +|++.|+++|+...
T Consensus        28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            45566678999999999999999986 347999999998 99999999999764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.07  E-value=0.00027  Score=54.61  Aligned_cols=49  Identities=18%  Similarity=0.408  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhC----------CchhhhcccCC----CCCHHHHHHHHHHHhhhH
Q 045583           68 HGNFTEDEDHVICTLYSQIG----------SRWSIIASRLP----GRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~lp----gRT~~qcKnRW~~~lkkk  116 (319)
                      ...||.+|..+||++..++.          ..|..||..|.    .||+.||+.+|.++.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            46799999999999987642          15999999873    699999999998776653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.76  E-value=0.00024  Score=53.46  Aligned_cols=52  Identities=12%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCC-CCCcccccccccCcccccccccccccccC
Q 045583           10 ANVKRGPWSPEEDATLKRYVETHGT-GGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        10 p~lkkg~WT~EEDe~L~~lV~k~G~-~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      .+-.--.||.|||..|+..+++-|. ...|..||+.+  +|++.|+..||...++
T Consensus        10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3444567999999999999999986 33699999887  5999999999987653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.56  E-value=0.00068  Score=53.82  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLN   60 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n   60 (319)
                      ...||+||.++..+++..||.  +|..|+..++ +|+..+|.+-|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            467999999999999999997  8999999998 9999999886643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.49  E-value=0.00088  Score=50.35  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCcccccc-cccCccccccccccccc
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQ-KAGLKRCGKSCRLRWLN   60 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~-~lg~~Rt~kQCr~Rw~n   60 (319)
                      ....||+||-++..+++.+||.  +|..|++ .++ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            4568999999999999999998  8999998 587 9999999887653

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.44  E-value=0.0069  Score=58.99  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccc---------------------------------------
Q 045583           15 GPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCR---------------------------------------   55 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr---------------------------------------   55 (319)
                      +.||.-+=..++.++.+||. .+-..||..++.+++...++                                       
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999998 68999999885345543222                                       


Q ss_pred             ---------cccccc--cCCCC--CCCCCCHHHHHHHHHHHhhhCC----chhhhccc------------CCCCCHHHHH
Q 045583           56 ---------LRWLNY--LRPDI--KHGNFTEDEDHVICTLYSQIGS----RWSIIASR------------LPGRTDNDVK  106 (319)
Q Consensus        56 ---------~Rw~n~--L~p~l--krg~WT~EED~~Ll~lv~~~G~----kWs~IA~~------------lpgRT~~qcK  106 (319)
                               .-|..+  .-+..  +...||++||..|+-.+.+||-    .|..|-..            |..||+.+|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                     222111  00111  4557999999999999999995    59988433            3579999999


Q ss_pred             HHHHHHhhh
Q 045583          107 NYWNTKLKK  115 (319)
Q Consensus       107 nRW~~~lkk  115 (319)
                      .|.+.+++-
T Consensus       283 rRc~tLi~~  291 (374)
T 2y9y_A          283 RRGNTLLQC  291 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.35  E-value=0.00024  Score=54.90  Aligned_cols=51  Identities=22%  Similarity=0.515  Sum_probs=40.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC------C--CCCcccccccc---cCcccccccccccccccC
Q 045583           13 KRGPWSPEEDATLKRYVETHG------T--GGNWIALPQKA---GLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G------~--~~~W~~IA~~l---g~~Rt~kQCr~Rw~n~L~   63 (319)
                      +...||.+|-..|++++...-      .  ...|..||..|   |..|++.||+.+|.++.+
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            567899999999999997531      1  12599999875   468999999999988653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.46  E-value=0.012  Score=46.75  Aligned_cols=49  Identities=12%  Similarity=0.272  Sum_probs=40.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCccccccccc----Cccccccccccccccc
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG----LKRCGKSCRLRWLNYL   62 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg----~~Rt~kQCr~Rw~n~L   62 (319)
                      ++...||.||...|.+++++|.-  .|..|+.+..    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999997  8999998764    2688888888887654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.10  E-value=0.045  Score=48.23  Aligned_cols=38  Identities=29%  Similarity=0.498  Sum_probs=31.5

Q ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 045583            5 PCCDKANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQ   43 (319)
Q Consensus         5 ~cc~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~   43 (319)
                      |++.++.-....||.+||..|+..|.+||. ++|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~-g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGY-GSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCc-CcHHHHHh
Confidence            455566656677999999999999999999 69999854

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.60  E-value=0.13  Score=38.13  Aligned_cols=47  Identities=11%  Similarity=0.022  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCc---hhhhcccC--CCCCHHHHHHHHHHHh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSR---WSIIASRL--PGRTDNDVKNYWNTKL  113 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--pgRT~~qcKnRW~~~l  113 (319)
                      .+-.||+|..+..++++.++|..   |..|.+.|  +|.|..+|+.|...+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999964   67888775  7999999999976543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.80  E-value=0.25  Score=46.80  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           69 GNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      +.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            47999999999999999998 79999999999999999887655443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.79  E-value=0.18  Score=44.23  Aligned_cols=49  Identities=18%  Similarity=0.298  Sum_probs=41.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhC---Cchhhhcc--cCCCCCHHHHHHHHHHHhhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIG---SRWSIIAS--RLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~lpgRT~~qcKnRW~~~lkk  115 (319)
                      ....||+.|-..|++++.+||   .+|..|+.  .|.++|..+|+..+...+..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999   48999986  48899999999988776654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=87.16  E-value=0.28  Score=36.22  Aligned_cols=50  Identities=12%  Similarity=0.028  Sum_probs=35.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCC-CCccccccccc-Cccccccccccccc
Q 045583           11 NVKRGPWSPEEDATLKRYVETHGTG-GNWIALPQKAG-LKRCGKSCRLRWLN   60 (319)
Q Consensus        11 ~lkkg~WT~EEDe~L~~lV~k~G~~-~~W~~IA~~lg-~~Rt~kQCr~Rw~n   60 (319)
                      ...+-.||+|.-++.+++|++.|.. ..+..|.+.|+ .+.|..+++.+.+.
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4567889999999999999999941 12567766655 24566666655443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.94  E-value=0.55  Score=43.71  Aligned_cols=28  Identities=32%  Similarity=0.571  Sum_probs=25.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccc
Q 045583           15 GPWSPEEDATLKRYVETHGTGGNWIALPQ   43 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~   43 (319)
                      -.|+.+||..|+..|-+||. |+|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcC-CcHHHHhc
Confidence            45999999999999999999 79999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-08
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-10
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-07
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-10
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-12
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-07
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	7e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (190), Expect = 5e-19
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
          + +GPW+ EED  L + V+ +G    W  + +     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 66  IKHGNFTEDEDHVICTLYSQIG-SRWSIIASRLPGRTDNDVKNYWNTKLK 114
           +  G +T++ED  +  L  + G  RWS+IA  L GR     +  W+  L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (184), Expect = 3e-18
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD 65
          +  W+ EED  LK+ VE +GT  +W  +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTD-DWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 69  GNFTEDEDHVICTLYSQIGSR-WSIIASRLPGRTDNDVKNYWNTKLK 114
             +T +ED  +  L  Q G+  W +IA+ LP RTD   ++ W   L 
Sbjct: 2   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 1e-15
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLR 63
          KR  W  EED  L+  V  +G  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 4e-06
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 67  KHGNFTEDEDHVICTLYSQIG-SRWSIIASRLP--GRTDNDVKNYWNTKLK 114
           K   +  +ED  + +   + G   WS I        RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.8 bits (168), Expect = 1e-15
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 14 RGPWSPEEDATLKRYVETHGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHG 69
          +  ++ EED  +   V  + T       +  +         G S R R+  YL   +++ 
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 70 NFTEDEDHVI 79
             +    ++
Sbjct: 60 YEVDKFGKLV 69

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 69  GNFTEDEDHVICTLYSQIGSR------WSIIASRLPGRTDNDVKNYWNTKLKKKL 117
            +FT++ED  I  +  +  +R      +  I+  +P  T N +++ +   L K+L
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPDI 66
          K+  W+ EE   +K  V+ +G  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYG-EGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 67  KHGNFTEDEDHVICTLYSQIGS-RWSIIASR--LPGRTDNDVKNYWNTKLKKKL 117
           K   +T +E   +     + G   W+ I+       RT   +K+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 12/84 (14%)

Query: 16 PWSPEEDATLKRYVETHGTGGNWIALPQKA---GLKRCGKSCRLRWLNYLR-----PDIK 67
          P+S  E   L   VE  G  G W  +  +A      R     + +W   +      P  +
Sbjct: 2  PFSVAEVEALVEAVEHLG-TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 68 HGNFTEDEDHVICTLYSQIGSRWS 91
           G     +   +        + WS
Sbjct: 61 RGEPVPQD---LLDRVLAAHAYWS 81

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 2e-13
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTE 73
             W+ EE    ++ +   G     I+   K    R     +     Y +  +K G   E
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTKIS---KLIGSRTVLQVKSYARQYFKNKVKCGLDKE 58

Query: 74 DEDH 77
            + 
Sbjct: 59 TPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 9e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGK 121
           +T +E  +     ++ G RW+ I+  +  RT   VK+Y     K K+  G 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 55

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 21/46 (45%), Positives = 35/46 (76%)

Query: 69  GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK 114
            ++TE+ED +I   + ++G+RW+ IA  LPGRTDN +KN+WN+ ++
Sbjct: 2   TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR 63
          +  W+ EED  + +  +  G     IA   K    R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIA---KLLPGRTDNAIKNHWNSTMR 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 71  FTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115
           ++E E       + Q    + +IAS L  +T  +   Y+    K 
Sbjct: 20  WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLR 63
              WS +E  T +     H      IA  L +     +    C L +    +
Sbjct: 16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLER-----KTVAECVLYYYLTKK 63

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 5e-11
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 69  GNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKK 115
             +T +E  +      + G  +  I+  +  ++   VKN++    ++
Sbjct: 6   ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 13 KRGPWSPEEDATLKRYVETHGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLR 63
              W+ EE     + +  +G     I+  +       +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIG-----NKSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 8  DKANVKRGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRW 58
          ++A     PW+  +   L+  ++ +  G    W  + +     +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 63  RPDIKHGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYW 109
           R       +T+++  ++     Q        W  IA  +P ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 17 WSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61
          W+ +E+  L   V   G  GNW  +  +    +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.2 bits (117), Expect = 7e-09
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 16 PWSPEEDATLKRYVETHGTGG-NWIALPQKAGLKRCGKSCRLRWLNYLRPDIKH 68
          PWS +E+   +R +  +     +  A   +A   R  +  +  +   L  DIK+
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 71  FTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYWNTKLK--KKLLAGKV 122
           ++  E+       +        RW+ +A  + GRT  +VK ++   ++  K + +GKV
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 61

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 36  GNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSR---WSI 92
           G   +    A  K    +             K   +T + D VI T+  + G++   +S+
Sbjct: 1   GPSGSSGAGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSV 60

Query: 93  IASRLPGRTDNDVKNYWNTKLK 114
           I+ +L  +T  +V + +   ++
Sbjct: 61  ISQQLGNKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.37
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.28
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.26
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.23
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.15
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.13
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.08
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.82
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.81
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.73
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.13
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.99
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.84
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.43
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.23
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.45
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.53
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.29
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.69
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	92.73
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.94
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.82

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.9e-20  Score=143.82  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC----CCcccccccccCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhh
Q 045583           14 RGPWSPEEDATLKRYVETHGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQI   86 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~----~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~   86 (319)
                      |++||+|||++|+++|.+||..    .+|..||+.|+ +||++|||+||.++|+|.+++++||.+||++|+.++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999862    14999999998 999999999999999999999999999999988766543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.3e-18  Score=122.21  Aligned_cols=52  Identities=38%  Similarity=0.841  Sum_probs=49.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD   65 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~   65 (319)
                      ++||+||+|||++|+++|++||. ++|..||+.++ +||+.||+.||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            57999999999999999999997 58999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.2e-17  Score=114.02  Aligned_cols=47  Identities=45%  Similarity=0.886  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.2e-17  Score=115.20  Aligned_cols=50  Identities=34%  Similarity=0.763  Sum_probs=47.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCC
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPD   65 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~   65 (319)
                      |++||+|||++|+++|.+||. ++|..||..++ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            689999999999999999997 58999999998 999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.1e-16  Score=111.99  Aligned_cols=50  Identities=32%  Similarity=0.713  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      |++|+||+|||++|+++|.+||. +|..||+.|+|||+.||++||+.+|.+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999994 899999999999999999999988764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=4.3e-16  Score=120.18  Aligned_cols=74  Identities=23%  Similarity=0.379  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccccc---cCccccccccccccccc-----CCCCCCCCCCHHHHHHHHHHHhhh
Q 045583           15 GPWSPEEDATLKRYVETHGTGGNWIALPQKA---GLKRCGKSCRLRWLNYL-----RPDIKHGNFTEDEDHVICTLYSQI   86 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~~W~~IA~~l---g~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EED~~Ll~lv~~~   86 (319)
                      .+||+|||++|+++|++||. ++|..|++.+   ..+|++.||++||.|+|     ++..+++.|+++|   |+..|.++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~   76 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHH
Confidence            47999999999999999998 6999999753   34899999999999998     4678899999877   44444445


Q ss_pred             CCchhh
Q 045583           87 GSRWSI   92 (319)
Q Consensus        87 G~kWs~   92 (319)
                      +.+|++
T Consensus        77 ~~~wsq   82 (83)
T d2ckxa1          77 HAYWSQ   82 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            557763

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=5.4e-15  Score=103.62  Aligned_cols=48  Identities=33%  Similarity=0.631  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 045583           68 HGNFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTKLKK  115 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~lkk  115 (319)
                      +++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            578999999999999999995 899999999999999999999998864

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=4.9e-15  Score=115.13  Aligned_cols=61  Identities=21%  Similarity=0.301  Sum_probs=55.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhHHhcCCCcccccC
Q 045583           68 HGNFTEDEDHVICTLYSQIGSR------WSIIASRLPGRTDNDVKNYWNTKLKKKLLAGKVSLLTSN  128 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k~s~~~~~  128 (319)
                      ++.||+|||++|+++|.+||.+      |..||++|||||+.|||+||+..|.+.+.++.|+.....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~   67 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGK   67 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhH
Confidence            5799999999999999999975      999999999999999999999999999988888765443

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-15  Score=108.18  Aligned_cols=54  Identities=28%  Similarity=0.511  Sum_probs=48.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCccccccccc-CcccccccccccccccCCCCC
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPDIK   67 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg-~~Rt~kQCr~Rw~n~L~p~lk   67 (319)
                      ||++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-ChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998 58999998642 389999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-14  Score=99.98  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCC-chhhhcccC--CCCCHHHHHHHHHHHhh
Q 045583           67 KHGNFTEDEDHVICTLYSQIGS-RWSIIASRL--PGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l--pgRT~~qcKnRW~~~lk  114 (319)
                      ++++||+|||++|+++|.+||. +|+.||+.+  .+||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999996 899999875  59999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5e-14  Score=100.49  Aligned_cols=51  Identities=22%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCC-chhhhccc--CCCCCHHHHHHHHHHHhhhHH
Q 045583           67 KHGNFTEDEDHVICTLYSQIGS-RWSIIASR--LPGRTDNDVKNYWNTKLKKKL  117 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~-kWs~IA~~--lpgRT~~qcKnRW~~~lkkkl  117 (319)
                      ++.+||+|||++|+++|.+||. +|+.||+.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            4789999999999999999995 89999997  569999999999999887643

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-14  Score=102.51  Aligned_cols=50  Identities=30%  Similarity=0.466  Sum_probs=44.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCCccccccccc-CcccccccccccccccC
Q 045583           13 KRGPWSPEEDATLKRYVETHGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        13 kkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg-~~Rt~kQCr~Rw~n~L~   63 (319)
                      ++++||+|||++|+++|.+||. ++|..|++.++ .+|++.||++||.++++
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~-~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5899999999999999999998 69999998653 48999999999998754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.8e-14  Score=101.76  Aligned_cols=54  Identities=26%  Similarity=0.385  Sum_probs=49.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhhhHHhcCC
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLKKKLLAGK  121 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lkkkl~~~k  121 (319)
                      ...||+|||++|++++..||.+|..||.+||+||+.||++||..++++....+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~   55 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   55 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            357999999999999999999999999999999999999999999988765543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.2e-14  Score=99.45  Aligned_cols=47  Identities=19%  Similarity=0.480  Sum_probs=44.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      |.+||+|||++|+++|++||.  +|..||+.++ +||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN--RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS--CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh--HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            679999999999999999998  8999999998 9999999999998874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.7e-14  Score=98.18  Aligned_cols=44  Identities=23%  Similarity=0.617  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583           16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      .||+|||++|+++|++||. ++|..||+.++ +||+.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~-~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC-ccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            5999999999999999998 58999999999 99999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=94.74  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHHHHH
Q 045583           63 RPDIKHGNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      .+...+++||+|||++|++++.+||.    +|..||+.|||||..||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999986    699999999999999999999653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.1e-13  Score=92.32  Aligned_cols=43  Identities=14%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHH
Q 045583           70 NFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      .||.|||++|+++|.+||. +|..||++|++||+.||+.||..+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            5999999999999999995 799999999999999999999865

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.28  E-value=2.4e-12  Score=93.82  Aligned_cols=46  Identities=20%  Similarity=0.409  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCC----chhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           69 GNFTEDEDHVICTLYSQIGS----RWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      .+||+|||++|++++.+||.    +|.+||.+|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999986    59999999999999999999976654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.6e-13  Score=95.59  Aligned_cols=52  Identities=15%  Similarity=0.399  Sum_probs=46.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCC--CcccccccccCccccccccccccc
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTGG--NWIALPQKAGLKRCGKSCRLRWLN   60 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~~--~W~~IA~~lg~~Rt~kQCr~Rw~n   60 (319)
                      .++...+++||+|||++|+++|.+||.+.  +|..||+.|+ +|++.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            57788899999999999999999999732  4999999998 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2e-13  Score=99.81  Aligned_cols=59  Identities=19%  Similarity=0.331  Sum_probs=52.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccCCCCCCCCCCHHH
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPDIKHGNFTEDE   75 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EE   75 (319)
                      ..+||+|||++|+++|.+||.  +|..||+.++ +||+.||+.||.++|++..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc--hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            367999999999999999996  8999999998 9999999999999998877777665543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=5.4e-12  Score=99.04  Aligned_cols=69  Identities=19%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             cccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhhCCc---hhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           48 KRCGKSCRLRWLNYLRPDIKHGNFTEDEDHVICTLYSQIGSR---WSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        48 ~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                      ..+..+++.++.+..++......||.|||++|++.++++|.+   |..||+.|+|||.+|||+||..+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            566777888888888888889999999999999999999987   999999999999999999998887654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.15  E-value=1.4e-11  Score=94.50  Aligned_cols=50  Identities=26%  Similarity=0.464  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHHhhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhHHhc
Q 045583           70 NFTEDEDHVICTLYSQIGS-RWSIIASR----LPGRTDNDVKNYWNTKLKKKLLA  119 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcKnRW~~~lkkkl~~  119 (319)
                      +||.|||++|+++|.+||. +|+.|++.    +++||+.|||+||+++++.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            7999999999999999996 89999975    68999999999999999876543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.7e-11  Score=90.44  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 045583           66 IKHGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~l  113 (319)
                      ....+||+||+++|++++.+||.+|..||.+|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-11  Score=88.78  Aligned_cols=47  Identities=15%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASRLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcKnRW~~~lk  114 (319)
                      ...||+||+++|++++..||.+|..||.+|||||..+|+++|....+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999987654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.08  E-value=7e-12  Score=91.29  Aligned_cols=45  Identities=16%  Similarity=0.398  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC--CcccccccccCccccccccccccc
Q 045583           15 GPWSPEEDATLKRYVETHGTGG--NWIALPQKAGLKRCGKSCRLRWLN   60 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G~~~--~W~~IA~~lg~~Rt~kQCr~Rw~n   60 (319)
                      .+||+|||++|+++|++||.+.  .|..||..++ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999731  4999999998 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.5e-10  Score=82.37  Aligned_cols=47  Identities=19%  Similarity=0.390  Sum_probs=43.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccccC
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      ..+||+|||++|.+++.+||.  +|..||+.++ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc--hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999997  8999999998 9999999999988753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.6e-10  Score=83.09  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=45.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCCcccccccccCccccccccccccccc
Q 045583            9 KANVKRGPWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus         9 Kp~lkkg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      +......+||+|||++|++++.+||.  +|..||+.++ +|+..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS--CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC--cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            44455688999999999999999997  8999999998 999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=9.4e-10  Score=86.08  Aligned_cols=54  Identities=15%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC-CCcccccccccCccccccccccccccc
Q 045583            8 DKANVKRGPWSPEEDATLKRYVETHGTG-GNWIALPQKAGLKRCGKSCRLRWLNYL   62 (319)
Q Consensus         8 ~Kp~lkkg~WT~EEDe~L~~lV~k~G~~-~~W~~IA~~lg~~Rt~kQCr~Rw~n~L   62 (319)
                      .+.+.+...||+|||+.|+..++++|.. ..|..||+.|+ +|++.|||.||...+
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3466778899999999999999999962 23999999998 999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.7e-06  Score=61.19  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHhhhCCchhhhccc-CCCCCHHHHHHHHHH
Q 045583           69 GNFTEDEDHVICTLYSQIGSRWSIIASR-LPGRTDNDVKNYWNT  111 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-lpgRT~~qcKnRW~~  111 (319)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.4e-06  Score=60.99  Aligned_cols=43  Identities=26%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHhhhC----CchhhhcccCCCCCHHHHHHHHHHH
Q 045583           69 GNFTEDEDHVICTLYSQIG----SRWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      ..||.||+.+|.+++.+|.    .||.+||..| |||..+|..|+..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999995    4799999999 99999999999544

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-06  Score=62.61  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC--CCCCcccccccccCcccccccccccccc
Q 045583           15 GPWSPEEDATLKRYVETHG--TGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus        15 g~WT~EEDe~L~~lV~k~G--~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      +.||+||+++|.+++.+|.  ..+.|..||..+|  |+..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            5799999999999999994  3357999999996  9999999998654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=2e-05  Score=55.38  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccccCcccccccccccccc
Q 045583           16 PWSPEEDATLKRYVETHGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (319)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg~~Rt~kQCr~Rw~n~   61 (319)
                      .||+||-+++.+++.+||.  +|..|++.+..+|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK--df~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc--cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6999999999999999998  8999998643499999999887654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00027  Score=47.23  Aligned_cols=45  Identities=20%  Similarity=0.398  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchhhhccc--C-CCCCHHHHHHHHHHH
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWSIIASR--L-PGRTDNDVKNYWNTK  112 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~--l-pgRT~~qcKnRW~~~  112 (319)
                      +..||+||..-|...|+.+|+.|..|-=.  | |||+..++..+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            35799999999999999999999998433  3 899999999998765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00044  Score=48.91  Aligned_cols=47  Identities=19%  Similarity=0.330  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhC--------C-chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 045583           68 HGNFTEDEDHVICTLYSQIG--------S-RWSIIAS-RLPGRTDNDVKNYWNTKLK  114 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G--------~-kWs~IA~-~lpgRT~~qcKnRW~~~lk  114 (319)
                      |.+||.|||+.|++.|.++.        + =|..+++ .+|.+|-...|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999998873        3 2999984 7899999999999988775

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00039  Score=49.17  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=39.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----C--Ccccccc-cccCcccccccccccccccC
Q 045583           14 RGPWSPEEDATLKRYVETHGTG-----G--NWIALPQ-KAGLKRCGKSCRLRWLNYLR   63 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~-----~--~W~~IA~-~lg~~Rt~kQCr~Rw~n~L~   63 (319)
                      |.+||.|||+.|+++|.++...     +  -|..+++ .+. .++..+-|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4689999999999999998432     1  3888885 454 7899999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.45  E-value=0.0022  Score=45.90  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCchh---hhccc--CCCCCHHHHHHHHHHHh
Q 045583           68 HGNFTEDEDHVICTLYSQIGSRWS---IIASR--LPGRTDNDVKNYWNTKL  113 (319)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kWs---~IA~~--lpgRT~~qcKnRW~~~l  113 (319)
                      +-.||+||.+++++++..+|..|.   .|.+.  ++|+|..+|+.|...+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999874   66555  59999999999876553

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.011  Score=42.71  Aligned_cols=50  Identities=14%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCc----hhhhcccCCCCCHHHHHHHHHHHhhhH
Q 045583           67 KHGNFTEDEDHVICTLYSQIGSR----WSIIASRLPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~k----Ws~IA~~lpgRT~~qcKnRW~~~lkkk  116 (319)
                      ..+.|+++|-.+|-.++..+...    |..||-.+..||+.+|..+|...++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            45689999999999999988753    999999999999999999997765443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.29  E-value=0.0036  Score=44.71  Aligned_cols=49  Identities=12%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCCc--cccccccc-Ccccccccccccccc
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTGGNW--IALPQKAG-LKRCGKSCRLRWLNY   61 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~~~W--~~IA~~lg-~~Rt~kQCr~Rw~n~   61 (319)
                      ..+-.||+||-++.+.+|+.+|. +.|  ..|.+.++ .++|..||+.+...|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34668999999999999999997 344  35555543 367888888766554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.019  Score=41.43  Aligned_cols=52  Identities=17%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCC--CCcccccccccCcccccccccccccccCC
Q 045583           12 VKRGPWSPEEDATLKRYVETHGTG--GNWIALPQKAGLKRCGKSCRLRWLNYLRP   64 (319)
Q Consensus        12 lkkg~WT~EEDe~L~~lV~k~G~~--~~W~~IA~~lg~~Rt~kQCr~Rw~n~L~p   64 (319)
                      ..-+.|+++|=++|..++......  +-|..||..+| .|++..|...|..-+.-
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            446799999999999999876431  46999999999 99999999999876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.018  Score=38.13  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCccccccccc--Cccccccccccccc
Q 045583           14 RGPWSPEEDATLKRYVETHGTGGNWIALPQKAG--LKRCGKSCRLRWLN   60 (319)
Q Consensus        14 kg~WT~EEDe~L~~lV~k~G~~~~W~~IA~~lg--~~Rt~kQCr~Rw~n   60 (319)
                      |..||.||-.-|...|+++|.  .|..|--..+  .+|++.....+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G~--~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc--hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            457999999999999999998  8999975443  57887776666543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.94  E-value=0.52  Score=31.77  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHhhhCC-chhhhcccCCCCCHHHHHHHHHHH
Q 045583           70 NFTEDEDHVICTLYSQIGS-RWSIIASRLPGRTDNDVKNYWNTK  112 (319)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcKnRW~~~  112 (319)
                      .|+.-|=..++.+..+||. +-..||..|.|+|..+|+.+....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4899999999999999996 789999999999999998865443

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.82  E-value=0.32  Score=38.62  Aligned_cols=52  Identities=21%  Similarity=0.342  Sum_probs=41.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCC-c---hhhhccc------------CCCCCHHHHHHHHHHHhhhH
Q 045583           65 DIKHGNFTEDEDHVICTLYSQIGS-R---WSIIASR------------LPGRTDNDVKNYWNTKLKKK  116 (319)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-k---Ws~IA~~------------lpgRT~~qcKnRW~~~lkkk  116 (319)
                      ..++..+|+|||..|+-.+.+||- +   |..|-..            |..||+.++..|-+++++--
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            445557999999999999999996 3   8887322            25899999999998887643