Citrus Sinensis ID: 045589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHcccccccccccccccccccEEEcccEEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEccEEcccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHccccccccEEEccHHHHHHHHHHccccEEEEEEEcccccccEEEEEcccccEEEEEEEEccccccEEEEEEEccccEEEEEEEcccccEEEEcccccccccEccEcccccc
Coil and Loop (DISEMBL)
rsfgygnlysqgygtsSAALSTALFNSgvtcgvclikcpifqhiahykagiVPVRYRRvacgksggirftinGHSYFNLVLITNVGGAGDVLSVSikgsrtalsfkvttsdgclfisinvarpnwsfgqtyngrqf
Flexible Loop (DISEMBL)
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISinvarpnwsfgqtyngrqf
Low Complexity Region (SEG)
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF
Disordered region (IsUnstruct)
****YGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTY*****
Disordered Region (DISOPRED)
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYNGR**
Disordered Region (DISEMBL)
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF
Disordered Region (DISPRO)
*SFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCLIKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9FMA0	255	Expansin-A14 OS=Arabidops	yes	no	0.977	0.521	0.517	6e-43
O80622	253	Expansin-A15 OS=Arabidops	no	no	0.977	0.525	0.502	8e-43
Q9LDR9	249	Expansin-A10 OS=Arabidops	no	no	0.977	0.534	0.502	2e-41
Q9C554	250	Expansin-A1 OS=Arabidopsi	no	no	0.977	0.532	0.492	7e-41
Q38864	255	Expansin-A5 OS=Arabidopsi	no	no	0.977	0.521	0.494	4e-40
O22874	253	Expansin-A8 OS=Arabidopsi	no	no	0.977	0.525	0.485	4e-40
Q0DHB7	246	Expansin-A4 OS=Oryza sati	yes	no	0.977	0.540	0.477	1e-39
A2Y5R6	246	Expansin-A4 OS=Oryza sati	N/A	no	0.977	0.540	0.477	1e-39
Q6ZGU9	291	Expansin-A5 OS=Oryza sati	no	no	0.977	0.457	0.458	2e-38
Q4PNY1	248	Expansin-A11 OS=Oryza sat	no	no	0.977	0.536	0.47	2e-38

>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 113/201 (56%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN G +CG C  IKC                        
Sbjct: 51  GYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNF 110

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                PIF  IA YKAG+VPV+YRRVAC + GGIRFTINGHSYF
Sbjct: 111 AQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYF 170

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNV GAGDV+SVSIKG+ T                      ALSFKVTTSDG   
Sbjct: 171 NLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTV 230

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           IS N    NWSFGQTY G+QF
Sbjct: 231 ISNNATPRNWSFGQTYTGKQF 251

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)

>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 116/201 (57%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  IKC                        
Sbjct: 52  GYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNN 111

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA YKAG+VPV YRRV C + GGIRFTINGHSYF
Sbjct: 112 ALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYF 171

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVL+TNVGGAGDV SV++KGSRT                      ALSFKVT SDG   
Sbjct: 172 NLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTV 231

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S N+A  +WSFGQT+ GRQF
Sbjct: 232 VSNNIAPASWSFGQTFTGRQF 252

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDR9|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 113/201 (56%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGTS+AALSTALFN+G++CG C  I+C                        
Sbjct: 48  GYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNN 107

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA Y+AGIVPV YRRV C + GGIRFTINGHSYF
Sbjct: 108 ALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYF 167

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV S +IKGSRT                      ALSFKVTTSDG   
Sbjct: 168 NLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTV 227

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S N A   WS+GQT+ G QF
Sbjct: 228 VSFNAAPAGWSYGQTFAGGQF 248

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Plays a major role in control of leaf growth and influences the mechanical breakage behavior of the pedicel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 112/201 (55%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  I+C                        
Sbjct: 49  GYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNN 108

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA Y+AGIVPV YRRV C + GGIRFTINGHSYF
Sbjct: 109 ALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYF 168

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV S  +KGSRT                      +LSFKVTTSDG   
Sbjct: 169 NLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTI 228

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA   WSFGQT+ G Q 
Sbjct: 229 VSNNVANAGWSFGQTFTGAQL 249

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38864|EXPA5_ARATH Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 110/194 (56%), Gaps = 61/194 (31%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL---------------------------- 35
           GYGNLYSQGYG  +AALSTALF+ G++CG C                             
Sbjct: 60  GYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPPG 119

Query: 36  -----------IKCPIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITN 84
                      +  PI++ IA YK+GI+PV YRRV C +SGGIRFTINGHSYFNLVL+TN
Sbjct: 120 GACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTN 179

Query: 85  VGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLFISINVAR 122
           VGGAGDV SVS+KGSRT                      +LSF VTTSD    +S NVA 
Sbjct: 180 VGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAP 239

Query: 123 PNWSFGQTYNGRQF 136
           P WSFGQTY G QF
Sbjct: 240 PTWSFGQTYTGGQF 253

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 112/202 (55%), Gaps = 69/202 (34%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLY QGYGT++AALSTALFN+G+TCG C  +KC                        
Sbjct: 52  GYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNP 111

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P F  IA Y+AGIVPV +RRV C K GGIRFTINGHSYF
Sbjct: 112 GLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYF 171

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT-----------------------ALSFKVTTSDGCL 114
           NLVLI+NVGGAGDV +VSIKGS+T                       +LSF+VTTSDG  
Sbjct: 172 NLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRT 231

Query: 115 FISINVARPNWSFGQTYNGRQF 136
            +S +VA  NW FGQTY G QF
Sbjct: 232 LVSNDVAPSNWQFGQTYQGGQF 253

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 108/201 (53%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN G  CG C  ++C                        
Sbjct: 46  GYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNY 105

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P F HIA Y+AGIVPV +RRV C K GG+RFT+NGHSYF
Sbjct: 106 GLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYF 165

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVL+TNV GAGDV SVSIKGSRT                      +LSF+VT SDG   
Sbjct: 166 NLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTV 225

Query: 116 ISINVARPNWSFGQTYNGRQF 136
            S NVA P W FGQT+ G QF
Sbjct: 226 TSNNVAHPGWQFGQTFEGGQF 246

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Required for normal plant growth. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 108/201 (53%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN G  CG C  ++C                        
Sbjct: 46  GYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNY 105

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P F HIA Y+AGIVPV +RRV C K GG+RFT+NGHSYF
Sbjct: 106 GLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYF 165

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVL+TNV GAGDV SVSIKGSRT                      +LSF+VT SDG   
Sbjct: 166 NLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTV 225

Query: 116 ISINVARPNWSFGQTYNGRQF 136
            S NVA P W FGQT+ G QF
Sbjct: 226 TSNNVAHPGWQFGQTFEGGQF 246

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Required for normal plant growth. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6ZGU9|EXPA5_ORYSJ Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 112/205 (54%), Gaps = 72/205 (35%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  ++C                        
Sbjct: 86  GYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCP 145

Query: 39  ------------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGH 74
                                   P+FQ IA +KAGIVPV YRRVAC K GGIRFTINGH
Sbjct: 146 PNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGH 205

Query: 75  SYFNLVLITNVGGAGDVLSVSIKGSRT-----------------------ALSFKVTTSD 111
           SYFNLVL+TNVGGAGDV +V++K  R+                       ALSF+VTT D
Sbjct: 206 SYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGD 265

Query: 112 GCLFISINVARPNWSFGQTYNGRQF 136
           G   +S N     WSFGQT++G QF
Sbjct: 266 GRSVVSNNAVPRGWSFGQTFSGAQF 290

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PNY1|EXP11_ORYSJ Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 109/200 (54%), Gaps = 67/200 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYS GYGTS+AALSTALFN+G +CG C  ++C                        
Sbjct: 49  GYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYA 108

Query: 39  --------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFN 78
                               P F  IA  +AG+VPV+YRRVAC K GGIRFTI GHSYFN
Sbjct: 109 LAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFN 168

Query: 79  LVLITNVGGAGDVLSVSIKGSRTA----------------------LSFKVTTSDGCLFI 116
           LVL+TNVGGAGDV +VS+KGSR+                       LSF+VT SDG    
Sbjct: 169 LVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVT 228

Query: 117 SINVARPNWSFGQTYNGRQF 136
           S NVA   WSFGQT++G QF
Sbjct: 229 SDNVAPSGWSFGQTFSGGQF 248

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
359478822	557	PREDICTED: uncharacterized protein LOC10	0.977	0.238	0.542	1e-47
255568976	247	Alpha-expansin 15 precursor, putative [R	0.977	0.538	0.557	7e-47
147852565	247	hypothetical protein VITISV_024594 [Viti	0.977	0.538	0.542	2e-46
224125904	242	hypothetical protein POPTRDRAFT_773840 [	0.977	0.549	0.556	6e-45
351630247	248	expansin [Breonia chinensis] gi|35163027	0.977	0.536	0.547	1e-44
224052849	247	hypothetical protein POPTRDRAFT_547568 [	0.977	0.538	0.532	5e-44
429326530	247	expansin protein [Populus tomentosa]	0.977	0.538	0.522	1e-42
225452857	240	PREDICTED: expansin-A1 [Vitis vinifera]	0.977	0.554	0.528	2e-42
167860794	250	expansin 2 [Dimocarpus longan]	0.977	0.532	0.527	3e-42
255564788	247	Alpha-expansin 1 precursor, putative [Ri	0.977	0.538	0.517	3e-42

>gi|359478822|ref|XP_002285773.2| PREDICTED: uncharacterized protein LOC100267326 [Vitis vinifera]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 123/201 (61%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  +KC                        
Sbjct: 357 GYGNLYSQGYGTNTAALSTALFNNGLSCGACYEVKCVNDKRWCLPGSITVTATNFCPPNN 416

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQHIA YKAGIVPV+YRRVAC K+GGIRFT+NGHSYF
Sbjct: 417 ALTNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVQYRRVACKKTGGIRFTVNGHSYF 476

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV+SVSIKGS+T                      ALSFKVTTSDG   
Sbjct: 477 NLVLITNVGGAGDVVSVSIKGSKTSWQAMSRNWGQNWQSNTYLNGQALSFKVTTSDGRSV 536

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA PNW FGQT+NGRQF
Sbjct: 537 VSNNVAPPNWDFGQTFNGRQF 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568976|ref|XP_002525458.1| Alpha-expansin 15 precursor, putative [Ricinus communis] gi|223535271|gb|EEF36948.1| Alpha-expansin 15 precursor, putative [Ricinus communis]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 124/201 (61%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGTS+AALSTALFN+G+TCG C  IKC                        
Sbjct: 47  GYGNLYSQGYGTSTAALSTALFNNGLTCGACFEIKCVNDARWCLPGSIIVTATNFCPPNN 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQHIA++KAGIVPV+YRRVAC K+GGIRFTINGHSYF
Sbjct: 107 VLPSNAGGWCNPPLKHFDLSRPVFQHIANFKAGIVPVQYRRVACRKTGGIRFTINGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVL+TNVGGAGDV+S+SIKGSRT                      ALSFKVTTSDG   
Sbjct: 167 NLVLVTNVGGAGDVVSISIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFKVTTSDGHTV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           IS NVA PNWSFGQT+ GRQF
Sbjct: 227 ISNNVAPPNWSFGQTFTGRQF 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852565|emb|CAN82746.1| hypothetical protein VITISV_024594 [Vitis vinifera] gi|297746516|emb|CBI16572.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 123/201 (61%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  +KC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNNGLSCGACYEVKCVNDKRWCLPGSITVTATNFCPPNN 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQHIA YKAGIVPV+YRRVAC K+GGIRFT+NGHSYF
Sbjct: 107 ALTNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVQYRRVACKKTGGIRFTVNGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV+SVSIKGS+T                      ALSFKVTTSDG   
Sbjct: 167 NLVLITNVGGAGDVVSVSIKGSKTSWQAMSRNWGQNWQSNTYLNGQALSFKVTTSDGRSV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA PNW FGQT+NGRQF
Sbjct: 227 VSNNVAPPNWDFGQTFNGRQF 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125904|ref|XP_002319704.1| hypothetical protein POPTRDRAFT_773840 [Populus trichocarpa] gi|222858080|gb|EEE95627.1| hypothetical protein POPTRDRAFT_773840 [Populus trichocarpa]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 121/196 (61%), Gaps = 63/196 (32%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALF +G+TCG C  +KC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFKNGLTCGACFELKCVNDARWCLSGSIIVTATNFCPPNS 106

Query: 39  ----------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLI 82
                           P+FQH+A YKAGIVPV YRRVAC K+GGIRFTINGHSYFNLVLI
Sbjct: 107 AGGWCNPPSQHFDLSQPVFQHLARYKAGIVPVLYRRVACRKTGGIRFTINGHSYFNLVLI 166

Query: 83  TNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLFISINV 120
           TNVGGAGDV+SVSIKGSRT                      ALSFKVTTSDG   IS NV
Sbjct: 167 TNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFKVTTSDGRSIISSNV 226

Query: 121 ARPNWSFGQTYNGRQF 136
           A PNW+FGQT++G QF
Sbjct: 227 APPNWAFGQTFHGGQF 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351630247|gb|AEQ55278.1| expansin [Breonia chinensis] gi|351630277|gb|AEQ55293.1| expansin [Breonia chinensis]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 119/201 (59%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGTS+AALSTALFN+G+ CG C  IKC                        
Sbjct: 48  GYGNLYSQGYGTSTAALSTALFNNGLACGACFEIKCVNAGKWCLSGSITVTATNFCPPNS 107

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                PIF  IA YKAGIVPV+YRRV C K+GGIRFTINGHSYF
Sbjct: 108 ALPNNAGGWCNPPLKHFDLSQPIFLRIAQYKAGIVPVQYRRVPCRKNGGIRFTINGHSYF 167

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV+SVSIKGS+T                      ALSFKVTTSDG   
Sbjct: 168 NLVLITNVGGAGDVVSVSIKGSKTSLQSMSRNWGQNWQCNSNLNGQALSFKVTTSDGRTL 227

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA PNWSFGQTY+G QF
Sbjct: 228 VSNNVAPPNWSFGQTYSGGQF 248

Source: Breonia chinensis

Species: Breonia chinensis

Genus: Breonia

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052849|ref|XP_002297611.1| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa] gi|222844869|gb|EEE82416.1| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 121/201 (60%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  IKC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDNIWCLRGSITVTATNFCPPNN 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA YKAGIVPV+YRRVAC KSGGIRFTINGHSYF
Sbjct: 107 ALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV++VSIKG+++                      ALSFKVTTSDG   
Sbjct: 167 NLVLITNVGGAGDVVAVSIKGTKSNWQAMSRNWGQNWQSNTYLNNQALSFKVTTSDGRTV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA  NW+FGQTY GRQF
Sbjct: 227 VSNNVAPSNWAFGQTYTGRQF 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326530|gb|AFZ78605.1| expansin protein [Populus tomentosa]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 119/201 (59%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  IKC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDNTWCLQESIIVTATNFCPPNN 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA YKAGIVPV+YRRVAC KSGGIRFTINGHSYF
Sbjct: 107 ALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV++VSIKG+ +                      ALSF+VTTSDG   
Sbjct: 167 NLVLITNVGGAGDVVAVSIKGTTSNWQAMSRNWGQNWQSNTYLNNQALSFRVTTSDGRTV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA  NW+FGQTY G QF
Sbjct: 227 VSNNVAPSNWAFGQTYTGSQF 247

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452857|ref|XP_002283741.1| PREDICTED: expansin-A1 [Vitis vinifera] gi|147864216|emb|CAN78812.1| hypothetical protein VITISV_012111 [Vitis vinifera] gi|296082937|emb|CBI22238.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 117/193 (60%), Gaps = 60/193 (31%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  ++C                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGG 106

Query: 39  -------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNV 85
                        P+FQHIA Y+AGIVPV YRRV+C KSGGIRFT+NGHSYFNLVL+TNV
Sbjct: 107 WCDPPQQHFDLSQPVFQHIAQYRAGIVPVAYRRVSCRKSGGIRFTVNGHSYFNLVLVTNV 166

Query: 86  GGAGDVLSVSIKGSRTA----------------------LSFKVTTSDGCLFISINVARP 123
           GGAGDV +VSIKGSRTA                      LSF+V TSDG   +S NVA  
Sbjct: 167 GGAGDVHAVSIKGSRTAWQPMSRNWGQNWQSNSYLNGQSLSFRVVTSDGRAIVSYNVAPA 226

Query: 124 NWSFGQTYNGRQF 136
            WSFGQTY G QF
Sbjct: 227 GWSFGQTYTGGQF 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167860794|gb|ACA05165.1| expansin 2 [Dimocarpus longan]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 117/201 (58%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFNSG++CG C  IKC                        
Sbjct: 49  GYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIKCVNDARWCLPGSIVVTATNFCPPNN 108

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQHIA Y+AGIVPV YRRV C + GGIRFTINGHSYF
Sbjct: 109 ALPNDAGGWCNPPQQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRKGGIRFTINGHSYF 168

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGDV +VSIKGSRT                      +LSFKVTTSDG   
Sbjct: 169 NLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNTLLNGQSLSFKVTTSDGRTV 228

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           +S NVA   WSFGQTY+G QF
Sbjct: 229 VSNNVAPAGWSFGQTYSGAQF 249

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564788|ref|XP_002523388.1| Alpha-expansin 1 precursor, putative [Ricinus communis] gi|223537338|gb|EEF38967.1| Alpha-expansin 1 precursor, putative [Ricinus communis]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 117/201 (58%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFNSG++CG C  IKC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDNKWCLPGSIIITATNFCPPNL 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA Y+AGIVPV+YRRV C K+GGIRFTINGHSYF
Sbjct: 107 ALPNNNGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVQYRRVPCRKTGGIRFTINGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGD+++VSIKGS T                      +LSFKVTTSDG   
Sbjct: 167 NLVLITNVGGAGDIVAVSIKGSNTNWQAMSRNWGQNWQSSSYLNGQSLSFKVTTSDGRTV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           IS N A  NW+FGQTY G QF
Sbjct: 227 ISNNAAPSNWAFGQTYTGMQF 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2056670	253	EXPA15 "expansin A15" [Arabido	0.463	0.249	0.793	1.7e-49
TAIR|locus:2161028	255	EXPA14 "expansin A14" [Arabido	0.463	0.247	0.809	2.1e-49
TAIR|locus:2200625	259	EXPA10 "expansin A10" [Arabido	0.463	0.243	0.809	3.8e-48
TAIR|locus:2007106	275	EXPA1 "expansin A1" [Arabidops	0.463	0.229	0.793	1.1e-46
TAIR|locus:2061918	253	EXPA8 "expansin A8" [Arabidops	0.463	0.249	0.777	1.8e-46
TAIR|locus:2087027	255	EXPA5 "expansin A5" [Arabidops	0.463	0.247	0.793	3.7e-46
TAIR|locus:2099991	260	EXPA16 "expansin A16" [Arabido	0.463	0.242	0.746	1.1e-44
TAIR|locus:2180182	258	EXPA9 "expansin A9" [Arabidops	0.463	0.244	0.730	2.8e-44
TAIR|locus:2043240	257	EXPA4 "expansin A4" [Arabidops	0.463	0.245	0.746	9.1e-44
TAIR|locus:2153569	255	EXPA2 "expansin A2" [Arabidops	0.463	0.247	0.714	2.3e-41

TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+FQ IA YKAG+VPV YRRV C + GGIRFTINGHSYFNLVL+TNVGGAGDV SV++KG
Sbjct:   133 PVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKG 192

Query:    99 SRT 101
             SRT
Sbjct:   193 SRT 195

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             PIF  IA YKAG+VPV+YRRVAC + GGIRFTINGHSYFNLVLITNV GAGDV+SVSIKG
Sbjct:   132 PIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKG 191

Query:    99 SRT 101
             + T
Sbjct:   192 TNT 194

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-48, Sum P(3) = 3.8e-48
 Identities = 51/63 (80%), Positives = 55/63 (87%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+FQ IA Y+AGIVPV YRRV C + GGIRFTINGHSYFNLVLITNVGGAGDV S +IKG
Sbjct:   139 PVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKG 198

Query:    99 SRT 101
             SRT
Sbjct:   199 SRT 201

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS;IMP

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0005199 "structural constituent of cell wall" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=TAS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
 Identities = 50/63 (79%), Positives = 54/63 (85%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+FQ IA Y+AGIVPV YRRV C + GGIRFTINGHSYFNLVLITNVGGAGDV S  +KG
Sbjct:   130 PVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKG 189

Query:    99 SRT 101
             SRT
Sbjct:   190 SRT 192

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=TAS

GO:0010114 "response to red light" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P F  IA Y+AGIVPV +RRV C K GGIRFTINGHSYFNLVLI+NVGGAGDV +VSIKG
Sbjct:   133 PAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKG 192

Query:    99 SRT 101
             S+T
Sbjct:   193 SKT 195

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2087027 EXPA5 "expansin A5" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
 Identities = 50/63 (79%), Positives = 57/63 (90%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             PI++ IA YK+GI+PV YRRV C +SGGIRFTINGHSYFNLVL+TNVGGAGDV SVS+KG
Sbjct:   134 PIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKG 193

Query:    99 SRT 101
             SRT
Sbjct:   194 SRT 196

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
 Identities = 47/63 (74%), Positives = 53/63 (84%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+F  IA Y+AGIVP+ YRRVAC KSGGIRFTINGH YFNLVLITNV GAGD+   S+KG
Sbjct:   139 PVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKG 198

Query:    99 SRT 101
             S+T
Sbjct:   199 SKT 201

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.8e-44, Sum P(3) = 2.8e-44
 Identities = 46/63 (73%), Positives = 51/63 (80%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+F  IA YKAGIVPV YRR+ C K GGIRFTING  YFNLVL+TNV GAGDV+ VS+KG
Sbjct:   137 PMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKG 196

Query:    99 SRT 101
             S T
Sbjct:   197 SNT 199

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 9.1e-44, Sum P(3) = 9.1e-44
 Identities = 47/63 (74%), Positives = 52/63 (82%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P+F  IA Y+AGIVPV YRRV C K GGIRFTINGH YFNLVLITNV GAGD++  S+KG
Sbjct:   136 PVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKG 195

Query:    99 SRT 101
             SRT
Sbjct:   196 SRT 198

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006949 "syncytium formation" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query:    39 PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKG 98
             P F  IA Y+AGIVPV +RRV C K GGIRFTING+ YF+LVLITNVGGAGD+ +VS+KG
Sbjct:   135 PAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKG 194

Query:    99 SRT 101
             S+T
Sbjct:   195 SKT 197

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrEXPA11 hypothetical protein (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	3e-56
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	4e-42
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	2e-14
smart00837	87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	4e-08
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	0.003

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score =  175 bits (445), Expect = 3e-56
 Identities = 106/201 (52%), Positives = 119/201 (59%), Gaps = 68/201 (33%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYSQGYGT++AALSTALFN+G++CG C  IKC                        
Sbjct: 47  GYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNL 106

Query: 39  ---------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYF 77
                                P+FQ IA YKAGIVPV+YRRVAC KSGGIRFTINGHSYF
Sbjct: 107 ALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYF 166

Query: 78  NLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDGCLF 115
           NLVLITNVGGAGD+++VSIKGS++                      ALSFKVTTSDG   
Sbjct: 167 NLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTV 226

Query: 116 ISINVARPNWSFGQTYNGRQF 136
           IS N A  NW+FGQTY G QF
Sbjct: 227 ISNNAAPSNWAFGQTYTGMQF 247

Length = 247

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score =  139 bits (352), Expect = 4e-42
 Identities = 85/203 (41%), Positives = 99/203 (48%), Gaps = 71/203 (34%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GYGNLYS GYGT +AALSTALFN G +CG C  I C                        
Sbjct: 52  GYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCP 111

Query: 39  --------------PIFQH----------IAHYKAGIVPVRYRRVACGKSGGIRFTINGH 74
                         P  QH          I  Y+ GIVPV ++RV C K GG+RFTING 
Sbjct: 112 PNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGR 171

Query: 75  SYFNLVLITNVGGAGDVLSVSIKGSRT----------------------ALSFKVTTSDG 112
            YF LVLI+NVGGAG + SVSIKGS+T                      +LSFKVTT+DG
Sbjct: 172 DYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDG 231

Query: 113 CLFISINVARPNWSFGQTYNGRQ 135
                +NV   NW FGQT++   
Sbjct: 232 QTRFFLNVVPANWGFGQTFSSSV 254

Length = 256

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 25/71 (35%)

Query: 67  IRFTINGHS--YFNLVLITNVGGAGDVLSVSIKGSRT----------------------- 101
           +RFT+NG S  YF  VL+ NVGG GD+++V IK + +                       
Sbjct: 1   VRFTVNGGSNPYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVLLGG 60

Query: 102 ALSFKVTTSDG 112
            LSF+VT+SD 
Sbjct: 61  PLSFRVTSSDS 71

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 47/87 (54%)

Query: 17 SAALSTALFNSGVTCGVC-LIKC------------------------------------- 38
          +AALSTALFN+G +CG C  I C                                     
Sbjct: 1  TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNP 60

Query: 39 ---------PIFQHIAHYKAGIVPVRY 56
                   P F+ IA YKAGIVPV+Y
Sbjct: 61 PRKHFDLSQPAFEKIAQYKAGIVPVKY 87

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 29/115 (25%)

Query: 47  YKAGIVPVRYRRVACGKSG-GIRFTINGHSYFN---LVLITNVGGAGDVLSVSI------ 96
           +  G+V V YRR+ C  +G  + F ++ HS F     +++    G  D+L+V I      
Sbjct: 127 FAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCK 186

Query: 97  --KGSRTA----------------LSFKVTTSDGCLFI-SINVARPNWSFGQTYN 132
             +G R A                L F+V+ S G  ++ + NV   +W  G  Y+
Sbjct: 187 EWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYD 241

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN00050	247	expansin A; Provisional	100.0
PLN00193	256	expansin-A; Provisional	100.0
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00115	118	pollen allergen group 3; Provisional	99.83
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.75
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.67
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.48
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.32
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	98.59
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	94.61
PRK10564	303	maltose regulon periplasmic protein; Provisional	91.1
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	83.86

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=6e-51  Score=323.88  Aligned_cols=136  Identities=78%  Similarity=1.296  Sum_probs=131.5

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc-----------------------------------------
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC-----------------------------------------   38 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C-----------------------------------------   38 (136)
                      ||||||+++.++|+.++||+|++||++|++||+|| |+|                                         
T Consensus        44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hF  123 (247)
T PLN00050         44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHF  123 (247)
T ss_pred             cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCccc
Confidence            79999999999999999999999999999999999 986                                         


Q ss_pred             ----HHHHHhhcccCceEeEEEEEeecccCCceEEEEccccceEEEEEEeecCCCCeEEEEEeccCc-------------
Q 045589           39 ----PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRT-------------  101 (136)
Q Consensus        39 ----~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~~~v~~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-------------  101 (136)
                          +||.+||++++|+|||+||||||+++|+|+|+|++++||++++|.|++|++||++||||++++             
T Consensus       124 DLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W  203 (247)
T PLN00050        124 DLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNW  203 (247)
T ss_pred             ccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCcee
Confidence                899999999999999999999999999999999999999999999999999999999998642             


Q ss_pred             ---------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecCCC
Q 045589          102 ---------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQF  136 (136)
Q Consensus       102 ---------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~qf  136 (136)
                               |||||||+.+|+++++.||||++||||+||+++||
T Consensus       204 ~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f  247 (247)
T PLN00050        204 QSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF  247 (247)
T ss_pred             EccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence                     99999999999999999999999999999999998

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=8.5e-51  Score=324.27  Aligned_cols=136  Identities=63%  Similarity=1.110  Sum_probs=131.4

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc-----------------------------------------
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC-----------------------------------------   38 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C-----------------------------------------   38 (136)
                      ||||||+++.++|+.++||+|++||++|++||+|| |+|                                         
T Consensus        49 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~  128 (256)
T PLN00193         49 GACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPL  128 (256)
T ss_pred             cccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCC
Confidence            79999999999999999999999999999999999 976                                         


Q ss_pred             -------HHHHHhhcccCceEeEEEEEeecccCCceEEEEccccceEEEEEEeecCCCCeEEEEEeccCc----------
Q 045589           39 -------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFNLVLITNVGGAGDVLSVSIKGSRT----------  101 (136)
Q Consensus        39 -------~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~~~v~~~~~~~~v~v~n~~G~g~I~~Vevk~s~~----------  101 (136)
                             +||.+||++++|+|+|+||||||+++|+|+|+|++++||++++|+|++|++||++||||++++          
T Consensus       129 ~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wG  208 (256)
T PLN00193        129 QHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWG  208 (256)
T ss_pred             cccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECccccc
Confidence                   899999999999999999999999999999999999999999999999999999999998643          


Q ss_pred             ------------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecC-CC
Q 045589          102 ------------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGR-QF  136 (136)
Q Consensus       102 ------------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~-qf  136 (136)
                                  |||||||+.+|+++++.||||++||||+||+++ ||
T Consensus       209 a~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        209 ANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             ceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence                        899999999999999999999999999999998 98

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=5.3e-48  Score=306.88  Aligned_cols=135  Identities=25%  Similarity=0.584  Sum_probs=122.1

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc------------------------------HHHHHhhc---
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------------PIFQHIAH---   46 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C------------------------------~aF~~ia~---   46 (136)
                      ||||||++..++++.++||+| +||++|++||+|| |||                              +||.+||+   
T Consensus        44 GACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~  122 (247)
T PLN03023         44 GACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNM  122 (247)
T ss_pred             ccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccc
Confidence            799999999999999999999 9999999999999 998                              99999998   


Q ss_pred             ----ccCceEeEEEEEeecccCC-ceEEEEcc---ccceEEEEEEeecCCCCeEEEEEeccCc-----------------
Q 045589           47 ----YKAGIVPVRYRRVACGKSG-GIRFTING---HSYFNLVLITNVGGAGDVLSVSIKGSRT-----------------  101 (136)
Q Consensus        47 ----~~~G~i~i~yrrV~C~~~g-~i~~~v~~---~~~~~~v~v~n~~G~g~I~~Vevk~s~~-----------------  101 (136)
                          +++|+|||+||||||.++| +|+|+|++   +|+|++++|.|++|+|||++||||+++.                 
T Consensus       123 ~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~  202 (247)
T PLN03023        123 AAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMP  202 (247)
T ss_pred             cchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcC
Confidence                4789999999999999999 99999983   3779999999999999999999998532                 


Q ss_pred             -----eEEEEEE--ecCCc-EEEEcceeCCCCCCCeEEecC-CC
Q 045589          102 -----ALSFKVT--TSDGC-LFISINVARPNWSFGQTYNGR-QF  136 (136)
Q Consensus       102 -----pls~Rvt--s~~G~-~vv~~~viP~~w~~G~tY~s~-qf  136 (136)
                           ||+||++  +.+|+ +++++||||++||+|+||+++ ||
T Consensus       203 ~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~  246 (247)
T PLN03023        203 NPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQL  246 (247)
T ss_pred             CCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccccc
Confidence                 6666664  44664 599999999999999999998 97

>PLN00115 pollen allergen group 3; Provisional

Probab=99.83  E-value=3.9e-20  Score=132.95  Aligned_cols=70  Identities=19%  Similarity=0.286  Sum_probs=60.0

Q ss_pred             ecccCCceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc-------------------------eEEEEEEecCC
Q 045589           60 ACGKSGGIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT-------------------------ALSFKVTTSDG  112 (136)
Q Consensus        60 ~C~~~g~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-------------------------pls~Rvts~~G  112 (136)
                      +|..  +|+|+|+  +|++|+.+++ |    +||.+||||+++.                         |||||+|+++|
T Consensus        21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~~~G   93 (118)
T PLN00115         21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLVKGG   93 (118)
T ss_pred             hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEEeCC
Confidence            4742  9999998  4588886654 3    4799999998632                         99999999999


Q ss_pred             cEEEEcceeCCCCCCCeEEecC-CC
Q 045589          113 CLFISINVARPNWSFGQTYNGR-QF  136 (136)
Q Consensus       113 ~~vv~~~viP~~w~~G~tY~s~-qf  136 (136)
                      ++++++||||++||||+||+++ ||
T Consensus        94 ~~~va~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         94 GYRVVDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             CEEEECceECCCCCCCCEEeccccC
Confidence            9999999999999999999999 97

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.75  E-value=7e-18  Score=114.11  Aligned_cols=56  Identities=43%  Similarity=0.745  Sum_probs=48.1

Q ss_pred             eEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc-----------------------eEEEEEEecC-CcEEEEcce
Q 045589           67 IRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT-----------------------ALSFKVTTSD-GCLFISINV  120 (136)
Q Consensus        67 i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-----------------------pls~Rvts~~-G~~vv~~~v  120 (136)
                      |+|+|+  |++||++++|.|++|+|||++||||++++                       ||+||||+.+ |++++++||
T Consensus         1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~nV   80 (82)
T PF01357_consen    1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVADNV   80 (82)
T ss_dssp             EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEEEE
T ss_pred             CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEecc
Confidence            689998  46999999999999999999999996543                       9999999966 999999999


Q ss_pred             eC
Q 045589          121 AR  122 (136)
Q Consensus       121 iP  122 (136)
                      ||
T Consensus        81 iP   82 (82)
T PF01357_consen   81 IP   82 (82)
T ss_dssp             E-
T ss_pred             cC
Confidence            99

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.67  E-value=4.2e-16  Score=118.71  Aligned_cols=112  Identities=20%  Similarity=0.310  Sum_probs=96.4

Q ss_pred             CCCceeeEecccccCCC----Ccccccc-ccc-------------------------HHHHHhhcccCceEeEEEEEeec
Q 045589           12 GYGTSSAALSTALFNSG----VTCGVCL-IKC-------------------------PIFQHIAHYKAGIVPVRYRRVAC   61 (136)
Q Consensus        12 ~~~~~~aA~~~~~f~~g----~~CG~C~-v~C-------------------------~aF~~ia~~~~G~i~i~yrrV~C   61 (136)
                      +...-+.||+++.-|=|    +.-|+-. |+-                         +||.+|++...|+|||+||.|+-
T Consensus        53 ~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qGrIpvqWrvv~a  132 (232)
T COG4305          53 PSDMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQGRIPVQWRVVKA  132 (232)
T ss_pred             CCcceeeecCHHHcccCCchhhhccceEEEECCCCceEEEEecccccccccccccChHHHhhhcchhcCccceeEEEecc
Confidence            44567889998877744    6677777 752                         99999999999999999999999


Q ss_pred             ccCCceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc--------------------eEEEEEEecCCcEEEEcc
Q 045589           62 GKSGGIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT--------------------ALSFKVTTSDGCLFISIN  119 (136)
Q Consensus        62 ~~~g~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~--------------------pls~Rvts~~G~~vv~~~  119 (136)
                      +.+||+.++||  |+.||.+++|+||.  -+|.++|+.+.+.                    ||++|+|++.|+.++  |
T Consensus       133 PvtGN~~YRiKeGSs~WWAAIQVRnH~--yPV~KlE~~qdg~WinlpK~dYNhFVgT~LG~~pL~~RmTDIRG~~l~--D  208 (232)
T COG4305         133 PVTGNFTYRIKEGSSRWWAAIQVRNHK--YPVMKLEYEQDGKWINLPKMDYNHFVGTNLGTGPLKVRMTDIRGKVLK--D  208 (232)
T ss_pred             cccccEEEEEecCCccceeeeeeeccc--CceEEEEEecCCeEeeccccccceeeccccCCCceEEEEeecccceee--c
Confidence            99999999998  57899999999998  7999999987653                    999999999999988  7


Q ss_pred             eeCCCCCC
Q 045589          120 VARPNWSF  127 (136)
Q Consensus       120 viP~~w~~  127 (136)
                      -+|+--|-
T Consensus       209 tlP~Lpk~  216 (232)
T COG4305         209 TLPKLPKS  216 (232)
T ss_pred             cccccccc
Confidence            77765554

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.48  E-value=3.5e-14  Score=103.10  Aligned_cols=53  Identities=36%  Similarity=0.681  Sum_probs=47.3

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc------------------------------------HHHHH
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------------------PIFQH   43 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C------------------------------------~aF~~   43 (136)
                      ||| |++   .+++.++||+|++||++|++||+|| |+|                                    +||.+
T Consensus        35 gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~  110 (125)
T PLN03024         35 SAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQ  110 (125)
T ss_pred             ccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHH
Confidence            689 554   4578899999999999999999999 973                                    89999


Q ss_pred             hhcccCceEeEEEE
Q 045589           44 IAHYKAGIVPVRYR   57 (136)
Q Consensus        44 ia~~~~G~i~i~yr   57 (136)
                      ||++++|+|+|+|.
T Consensus       111 iA~~~aG~v~V~y~  124 (125)
T PLN03024        111 IANPVAGIINIDYI  124 (125)
T ss_pred             hcCccCCEEEEEEe
Confidence            99999999999996

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.32  E-value=6.3e-13  Score=90.94  Aligned_cols=40  Identities=70%  Similarity=1.312  Sum_probs=35.7

Q ss_pred             eeEecccccCCCCcccccc-ccc----------------------------------------------HHHHHhhcccC
Q 045589           17 SAALSTALFNSGVTCGVCL-IKC----------------------------------------------PIFQHIAHYKA   49 (136)
Q Consensus        17 ~aA~~~~~f~~g~~CG~C~-v~C----------------------------------------------~aF~~ia~~~~   49 (136)
                      +||+|++||++|++||+|| |+|                                              +||.+||++++
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~   80 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA   80 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence            5899999999999999999 985                                              78888888888


Q ss_pred             ceEeEEE
Q 045589           50 GIVPVRY   56 (136)
Q Consensus        50 G~i~i~y   56 (136)
                      |+|+|+|
T Consensus        81 Gvi~v~y   87 (87)
T smart00837       81 GIVPVKY   87 (87)
T ss_pred             CEEeeEC
Confidence            8888876

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=98.59  E-value=2.7e-08  Score=65.99  Aligned_cols=40  Identities=35%  Similarity=0.864  Sum_probs=33.8

Q ss_pred             eeEecccccCCCCcccccc-ccc-------------------------------------HHHHHhhcccCceEeEEE
Q 045589           17 SAALSTALFNSGVTCGVCL-IKC-------------------------------------PIFQHIAHYKAGIVPVRY   56 (136)
Q Consensus        17 ~aA~~~~~f~~g~~CG~C~-v~C-------------------------------------~aF~~ia~~~~G~i~i~y   56 (136)
                      +||++..+|++|.+||+|| ++|                                     .||.+||.++.|+++|+|
T Consensus         1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~~~G~i~V~w   78 (78)
T PF03330_consen    1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADPDAGVIPVEW   78 (78)
T ss_dssp             EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred             CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence            6899999999999999999 754                                     889999888889998887

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=94.61  E-value=0.1  Score=37.72  Aligned_cols=45  Identities=18%  Similarity=0.378  Sum_probs=28.3

Q ss_pred             ceeeEecc-cccCCCCcccccc-ccc---------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589           15 TSSAALST-ALFNSGVTCGVCL-IKC---------------------PIFQHIAHY---KAGIVPVRYRRVA   60 (136)
Q Consensus        15 ~~~aA~~~-~~f~~g~~CG~C~-v~C---------------------~aF~~ia~~---~~G~i~i~yrrV~   60 (136)
                      .++++... +-| +...||.|+ ++=                     +||..|.+-   ..|.|+++|++|+
T Consensus        43 p~IGg~~~V~gW-nS~~CGtC~~lty~g~si~vlaID~a~~gfnis~~A~n~LT~g~a~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   43 PYIGGAPAVAGW-NSPNCGTCWKLTYNGRSIYVLAIDHAGGGFNISLDAMNDLTNGQAVELGRVDATYTQVD  113 (119)
T ss_dssp             TSEEEETT--ST-T-TTTT-EEEEEETTEEEEEEEEEE-SSSEEE-HHHHHHHHTS-CCCC-EEE-EEEEE-
T ss_pred             CeeccccccccC-CCCCCCCeEEEEECCeEEEEEEEecCCCcccchHHHHHHhcCCcccceeEEEEEEEEcC
Confidence            35555553 345 558999999 862                     888888652   5699999999985

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=91.10  E-value=0.99  Score=37.47  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             eEEEEEeecccCCceEEEEc-cccceEEEEEEeecCCCCeEEEEEeccCceEEEEEEe-cCCcEEEEcc--eeCCCCCCC
Q 045589           53 PVRYRRVACGKSGGIRFTIN-GHSYFNLVLITNVGGAGDVLSVSIKGSRTALSFKVTT-SDGCLFISIN--VARPNWSFG  128 (136)
Q Consensus        53 ~i~yrrV~C~~~g~i~~~v~-~~~~~~~v~v~n~~G~g~I~~Vevk~s~~pls~Rvts-~~G~~vv~~~--viP~~w~~G  128 (136)
                      .+.|..+.  .+..+.|.++ +++.+     ...+|.+.|.+.+|-....+|+|+|+| ...+.+-+.+  |+-++|++=
T Consensus        47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan~G~l~i~LsS~v~~~~VfaPnVlvLD~~~~~~  119 (303)
T PRK10564         47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPANIGELTLTLSSLVNDKSVFAPNVLVLDQNMRPA  119 (303)
T ss_pred             cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccccccEEEEEEEEecCCcEEeceEEEEcCCCCEE
Confidence            57787765  4468899998 56654     345677889999999877799999999 3334677766  778999999


Q ss_pred             eEEecCCC
Q 045589          129 QTYNGRQF  136 (136)
Q Consensus       129 ~tY~s~qf  136 (136)
                      .+|.+.+|
T Consensus       120 ~~y~s~~F  127 (303)
T PRK10564        120 AFYPSSYF  127 (303)
T ss_pred             EEecccce
Confidence            99988755

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=83.86  E-value=0.64  Score=33.47  Aligned_cols=36  Identities=33%  Similarity=0.748  Sum_probs=25.1

Q ss_pred             CCCCcccccc-cc---------------c---------HHHHHhhcc----cCceEeEEEEEeec
Q 045589           26 NSGVTCGVCL-IK---------------C---------PIFQHIAHY----KAGIVPVRYRRVAC   61 (136)
Q Consensus        26 ~~g~~CG~C~-v~---------------C---------~aF~~ia~~----~~G~i~i~yrrV~C   61 (136)
                      .+-.+||.|. |+               |         .+|.+|-..    ..|.+.|.|.-|.|
T Consensus        55 ~gq~~CGkClrVTNt~tga~~~~RIVDqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   55 MGQDSCGKCLRVTNTATGAQVTVRIVDQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             -SGGGTT-EEEEE-TTT--EEEEEEEEE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred             cCcccccceEEEEecCCCcEEEEEEEEcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence            4458899999 95               5         899999632    56899999999998

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	7e-26
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	7e-24
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	1e-23
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	2e-19
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	1e-17
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	2e-17

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score = 96.8 bits (240), Expect = 7e-26
 Identities = 37/202 (18%), Positives = 59/202 (29%), Gaps = 69/202 (34%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           G  N+    Y   +A  +  +F  G  CG C  ++C                        
Sbjct: 43  GIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIA 102

Query: 39  --------PIFQHIAH-------YKAGIVPVRYRRVACGKSGGIRFTINGHSYFN----L 79
                     F  +A           GI+ V +RRV C    G +   +     N     
Sbjct: 103 PYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLA 162

Query: 80  VLITNVGGAGDVLSVSIKGSRT------------------------ALSFKVTTSDGCLF 115
           VL+  V   GD++ + I+   +                          S ++T+  G   
Sbjct: 163 VLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKV 222

Query: 116 ISINVARPNWSFGQTYNGR-QF 136
           I+ +V   NW     Y    QF
Sbjct: 223 IAKDVIPANWRPDAVYTSNVQF 244

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 90.7 bits (225), Expect = 7e-24
 Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 60/188 (31%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVT----CGVCL-IKCP------------------- 39
               + S        A++ A  N G       G  L ++ P                   
Sbjct: 24  LLDPIPSDMEI---TAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLYPEGARGA 80

Query: 40  ------IFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHS--YFNLVLITNVGGAGDV 91
                  F+ I + K G + +++R V    +G   + I   S  ++  + + N      V
Sbjct: 81  LDLSPNAFRKIGNMKDGKINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRNHKYP--V 138

Query: 92  LSVSIKGSRT--------------------ALSFKVTTSDGCLFISINVARPN--WSFGQ 129
           + +  +                        +L  ++T   G +        P    S   
Sbjct: 139 MKMEYEKDGKWINMEKMDYNHFVSTNLGTGSLKVRMTDIRGKVVKDTIPKLPESGTSKAY 198

Query: 130 TYNGR-QF 136
           T  G  QF
Sbjct: 199 TVPGHVQF 206

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score = 90.7 bits (224), Expect = 1e-23
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 68/199 (34%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GY ++    +   +   +T +F SG  CG C  IKC                        
Sbjct: 43  GYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA 102

Query: 39  --------PIFQHIAH-------YKAGIVPVRYRRVACGKSGGIRFTIN----GHSYFNL 79
                     F  +A          AG + +++RRV C    G + T +     +  +  
Sbjct: 103 PYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLA 162

Query: 80  VLITNVGGAGDVLSVSIKGSRT------------------------ALSFKVTTSDGCLF 115
           +L+  V G GDV++V IK                              + + TT  G   
Sbjct: 163 LLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKT 222

Query: 116 ISINVARPNWSFGQTYNGR 134
            + +V    W    +Y  +
Sbjct: 223 EAEDVIPEGWKADTSYESK 241

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score = 76.8 bits (189), Expect = 2e-19
 Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 28/105 (26%)

Query: 56  YRRVACGKSGGIRFTINGHS--YFNLVLITNVGGAGDVLSVSIKGSRT------------ 101
           +   +  +   + FT+   S     ++ I        +  V ++   +            
Sbjct: 7   HHHGSAVQ---VTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNV 63

Query: 102 -----------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQ 135
                        +F+  +  G   +   V    +S G+TY   +
Sbjct: 64  WEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE 108

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score = 71.4 bits (175), Expect = 1e-17
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 26/94 (27%)

Query: 67  IRFTIN-GHSYFNLVLITNVGGAGDVLSVSIKGSRT------------------------ 101
           + FT+  G +  +L ++    G   +  V ++   +                        
Sbjct: 4   VTFTVEKGSNEKHLAVLVKYEG-DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQG 62

Query: 102 ALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQ 135
             +F+  T  G   +  +V    ++ G TY   +
Sbjct: 63  PFNFRFLTEKGMKNVFDDVVPEKYTIGATYAPEE 96

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score = 71.4 bits (175), Expect = 2e-17
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 25/94 (26%)

Query: 67  IRFTINGHS--YFNLVLITNVGGAGDVLSVSIKGSRT----------------------- 101
           + FT+   S     ++ I        +  V ++   +                       
Sbjct: 4   VTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVG 63

Query: 102 ALSFKVTTSDGCLFISINVARPNWSFGQTYNGRQ 135
             +F+  +  G   +   V    +S G+TY   +
Sbjct: 64  PFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.94
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.92
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.85
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.74
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	98.2
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	92.33
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	91.89
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	90.36
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	89.27
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	89.0
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	80.99

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=1.4e-48  Score=308.88  Aligned_cols=134  Identities=27%  Similarity=0.553  Sum_probs=127.0

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc--------------------------------HHHHHhhc-
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC--------------------------------PIFQHIAH-   46 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C--------------------------------~aF~~ia~-   46 (136)
                      ||||||+++..|++.|+||||++||++|++||+|| |+|                                +||.+||+ 
T Consensus        40 GACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~~C~~~~v~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~  119 (241)
T 1n10_A           40 GACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKK  119 (241)
T ss_dssp             CTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBST
T ss_pred             eeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCCccCCCCEEEEEeEecCCCCCCcceecCHHHHHHhhcc
Confidence            79999999999999999999999999999999999 987                                99999999 


Q ss_pred             ------ccCceEeEEEEEeecccCC--ceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc---------------
Q 045589           47 ------YKAGIVPVRYRRVACGKSG--GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT---------------  101 (136)
Q Consensus        47 ------~~~G~i~i~yrrV~C~~~g--~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~---------------  101 (136)
                            ++.|+|+|+||||+|+++|  +|+|+|+  |++||++|+|+|++|++||++||||++++               
T Consensus       120 g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~  199 (241)
T 1n10_A          120 GDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWR  199 (241)
T ss_dssp             TCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEE
T ss_pred             CcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEE
Confidence                  6899999999999999994  8999999  69999999999999999999999998642               


Q ss_pred             ---------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecC
Q 045589          102 ---------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGR  134 (136)
Q Consensus       102 ---------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~  134 (136)
                               ||+||||+++|++|+++||||++|+||+||+++
T Consensus       200 ~~~~~~l~gpls~RvT~~~G~~v~~~nViP~~w~~g~ty~~~  241 (241)
T 1n10_A          200 IDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK  241 (241)
T ss_dssp             EECSSCCCSCEEEEEEESSSCEEEEEEEECSSCCSSEEEEC-
T ss_pred             eCCCCCCCCCEEEEEEEeCCcEEEEccccCCCCCCCCEEeCC
Confidence                     899999999999999999999999999999974

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=1.1e-48  Score=309.99  Aligned_cols=136  Identities=28%  Similarity=0.552  Sum_probs=129.6

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc--------------------------------HHHHHhhc-
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC--------------------------------PIFQHIAH-   46 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C--------------------------------~aF~~ia~-   46 (136)
                      |||||++++..|++.|+||||++||++|++||+|| |+|                                +||.+||+ 
T Consensus        40 GACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~  119 (245)
T 2hcz_X           40 GACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKP  119 (245)
T ss_dssp             CTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEEEEEECCCTTSSSEEEECHHHHHHTBCT
T ss_pred             ccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEEEEeccCCCCCCccEEcCHHHHHHHhcc
Confidence            79999999999999999999999999999999999 987                                99999999 


Q ss_pred             ------ccCceEeEEEEEeecccCC--ceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc---------------
Q 045589           47 ------YKAGIVPVRYRRVACGKSG--GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT---------------  101 (136)
Q Consensus        47 ------~~~G~i~i~yrrV~C~~~g--~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~---------------  101 (136)
                            .+.|+|+|+||||+|+++|  +|+|+|+  +++||++|+|+|++|+++|++||||++++               
T Consensus       120 g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~  199 (245)
T 2hcz_X          120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWR  199 (245)
T ss_dssp             TCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEE
T ss_pred             ccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEE
Confidence                  6899999999999999984  6999998  69999999999999999999999998642               


Q ss_pred             ---------eEEEEEEecCCcEEEEcceeCCCCCCCeEEecC-CC
Q 045589          102 ---------ALSFKVTTSDGCLFISINVARPNWSFGQTYNGR-QF  136 (136)
Q Consensus       102 ---------pls~Rvts~~G~~vv~~~viP~~w~~G~tY~s~-qf  136 (136)
                               ||+||||+++|++|+++||||++|++|+||+++ ||
T Consensus       200 ~~~~~~l~gpls~RvT~~~G~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          200 MDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             CSCCSSCCSSCCEEEEETTSCEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             ECCCCCCCCCEEEEEEEeCCcEEEEeeeecCCCCCCCEEeCcccc
Confidence                     799999999999999999999999999999998 98

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=1.5e-39  Score=252.07  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=120.0

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCC----Ccccccc-ccc-------------------------HHHHHhhcccCc
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSG----VTCGVCL-IKC-------------------------PIFQHIAHYKAG   50 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g----~~CG~C~-v~C-------------------------~aF~~ia~~~~G   50 (136)
                      |||||+   ..|++.|+||||+++|++|    +.||+|| |+|                         +||.+||+...|
T Consensus        21 GACG~~---~~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~~gsv~V~v~D~CP~C~~~~~DLS~~aF~~la~~~~G   97 (208)
T 3d30_A           21 GAFLLD---PIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDG   97 (208)
T ss_dssp             CTTCCC---CCCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEETTEEEEEEEEEECTTCCTTCEEECHHHHHHHSCGGGS
T ss_pred             CcCCCC---CCCCCCEEEEeCHHHhCCCCcCccccCCEEEEEeCCCcEEEEEEECCCCCCCCeEECCHHHHHHhcccCCC
Confidence            799986   3467889999999999998    8999999 987                         999999999999


Q ss_pred             eEeEEEEEeecccCCceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc--------------------eEEEEEE
Q 045589           51 IVPVRYRRVACGKSGGIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT--------------------ALSFKVT  108 (136)
Q Consensus        51 ~i~i~yrrV~C~~~g~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~--------------------pls~Rvt  108 (136)
                      +++|+||||+|+++|+|+|+|+  +|+||++|+|+|++|  +|++||||++++                    ||+||||
T Consensus        98 ~i~v~~~~V~C~~~G~i~f~v~~Gs~~~~~~v~v~n~~g--~v~~v~i~~~~~W~~m~r~~~n~~~~~~~~~~pls~rvT  175 (208)
T 3d30_A           98 KINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRNHKY--PVMKMEYEKDGKWINMEKMDYNHFVSTNLGTGSLKVRMT  175 (208)
T ss_dssp             SEEEEEEEECCCCCSCCEEEECTTCSSSEEEEEEESCSS--CEEEEEEEETTEEEEEEECTTSCEEEECCCSSSEEEEEE
T ss_pred             EEEEEEEEeCCCCCCceeEEEcCCCCCceEEEEEEecCC--CEEEEEEecCCcEEEccccccceeecCCCCCCCEEEEEE
Confidence            9999999999999999999999  799999999999986  999999997642                    9999999


Q ss_pred             ecCCcEEEEcceeCCCCCC----CeEEecC-CC
Q 045589          109 TSDGCLFISINVARPNWSF----GQTYNGR-QF  136 (136)
Q Consensus       109 s~~G~~vv~~~viP~~w~~----G~tY~s~-qf  136 (136)
                      +.+|++|  .+|||++|++    |.+|+++ ||
T Consensus       176 ~~~G~~v--~~vip~~w~~~~~~~~~~~~~~Qf  206 (208)
T 3d30_A          176 DIRGKVV--KDTIPKLPESGTSKAYTVPGHVQF  206 (208)
T ss_dssp             ETTCCEE--EEEECCCCSSCCSSCEEEECCCCC
T ss_pred             ECCCCEE--EEEECCCCccCcccceEEeCcCcc
Confidence            9999999  7999999997    8999998 98

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=99.94  E-value=2e-26  Score=160.39  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             ceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc-----------------------eEEEEEEecCCcEEEEcce
Q 045589           66 GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT-----------------------ALSFKVTTSDGCLFISINV  120 (136)
Q Consensus        66 ~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~-----------------------pls~Rvts~~G~~vv~~~v  120 (136)
                      +|+|+|+  |++||++++|.|++|+|||++||||++++                       |||||||++||++++++||
T Consensus         3 ~i~F~V~~gs~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~rwGa~W~~~s~~~l~GplSfRvt~~~G~~~v~~nV   82 (100)
T 3ft1_A            3 QVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEV   82 (100)
T ss_dssp             EEEEEECTTCBTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEEETTEEEEECSSCCCSSEEEEEEETTCCEEEEEEE
T ss_pred             CEEEEEecCCCcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecccCCEeEeCCCCCCCCCEEEEEEEcCCcEEEECeE
Confidence            7999998  69999999999999999999999998653                       8999999999999999999


Q ss_pred             eCCCCCCCeEEecC-CC
Q 045589          121 ARPNWSFGQTYNGR-QF  136 (136)
Q Consensus       121 iP~~w~~G~tY~s~-qf  136 (136)
                      ||++|+||+||+++ ||
T Consensus        83 iPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           83 IPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             ECTTCCTTCEECCCCBC
T ss_pred             eCCCCCCCcEEeccccc
Confidence            99999999999998 85

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.92  E-value=1e-24  Score=153.51  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             ceEEEEc--cccceEEEEEEeecCCCCeEEEEEec-cCc----------------------eEEEEEEecCCcEEEEcce
Q 045589           66 GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKG-SRT----------------------ALSFKVTTSDGCLFISINV  120 (136)
Q Consensus        66 ~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~-s~~----------------------pls~Rvts~~G~~vv~~~v  120 (136)
                      +|.|+|+  |++||++++|.|++|+|||++||||+ +.+                      |||||||+++|++++++||
T Consensus        14 ~v~f~V~~~snp~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rnGa~W~~~s~~~L~GplSfRvtts~G~~~va~nV   93 (108)
T 2jnz_A           14 QVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEV   93 (108)
T ss_dssp             EEEEEECTTCCSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEETTEEEEECSSCCCSSEEEEEEETTTEEEEEEEE
T ss_pred             cEEEEEecCCCccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEccccCCEeEeCCCCCCCCCEEEEEEEcCCcEEEECeE
Confidence            8999998  79999999999999999999999996 322                      8999999999999999999


Q ss_pred             eCCCCCCCeEEecC
Q 045589          121 ARPNWSFGQTYNGR  134 (136)
Q Consensus       121 iP~~w~~G~tY~s~  134 (136)
                      ||++|+||+||+++
T Consensus        94 iPa~W~~Gqty~s~  107 (108)
T 2jnz_A           94 IPTAFSIGKTYKPE  107 (108)
T ss_dssp             ECSSCCTTCEECCC
T ss_pred             ECCCCCCCCEEeCC
Confidence            99999999999975

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.85  E-value=1e-23  Score=145.70  Aligned_cols=67  Identities=19%  Similarity=0.360  Sum_probs=62.1

Q ss_pred             ceEEEEc--cccceEEEEEEeecCCCCeEEEEEecc-Cc-----------------------eEEEEEEecCCcEEEEcc
Q 045589           66 GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGS-RT-----------------------ALSFKVTTSDGCLFISIN  119 (136)
Q Consensus        66 ~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s-~~-----------------------pls~Rvts~~G~~vv~~~  119 (136)
                      +|+|+|+  |++||++++|.|++  |||++||||++ ++                       |||||||+++|++++++|
T Consensus         3 ~i~F~V~~gs~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~~~G~~~v~~n   80 (96)
T 1bmw_A            3 KVTFTVEKGSNEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDD   80 (96)
T ss_dssp             CCCCCCCTTCSSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEETTTEECCBSS
T ss_pred             CEEEEEecCCCCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEEcCCcEEEEee
Confidence            7999999  79999999999998  89999999984 32                       899999999999999999


Q ss_pred             eeCCCCCCCeEEecC
Q 045589          120 VARPNWSFGQTYNGR  134 (136)
Q Consensus       120 viP~~w~~G~tY~s~  134 (136)
                      |||++|+||+||+++
T Consensus        81 ViP~~W~~G~ty~~~   95 (96)
T 1bmw_A           81 VVPEKYTIGATYAPE   95 (96)
T ss_dssp             CSCSSCCSSSCCCC-
T ss_pred             EeCCCCCCCCEEeCC
Confidence            999999999999974

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.74  E-value=2.5e-19  Score=135.41  Aligned_cols=67  Identities=21%  Similarity=0.369  Sum_probs=58.6

Q ss_pred             CccccC-----CCCCCCCCceeeEecccccCCC------Ccccccc-ccc------------------------------
Q 045589            1 RSFGYG-----NLYSQGYGTSSAALSTALFNSG------VTCGVCL-IKC------------------------------   38 (136)
Q Consensus         1 GaCGyg-----~~~~~~~~~~~aA~~~~~f~~g------~~CG~C~-v~C------------------------------   38 (136)
                      ||||||     +++.++|+.++||||++||++|      ++||+|| |+|                              
T Consensus        28 GACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg~~~~~g~SI~VtaTN~CPpn~  107 (181)
T 1wc2_A           28 GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIY  107 (181)
T ss_dssp             TTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSST
T ss_pred             cccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCcccccccCCCCCeEEEEEecCCCCCC
Confidence            899999     6778899999999999999997      8999999 984                              


Q ss_pred             ----------------------------HHHHHhhcccCceEeEEEEEeecccCCceE
Q 045589           39 ----------------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIR   68 (136)
Q Consensus        39 ----------------------------~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~   68 (136)
                                                  +| .+||....|++||+||||+|+..+++.
T Consensus       108 ~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~~~~GivpV~yrrV~C~~~~~~~  164 (181)
T 1wc2_A          108 PNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTGMGWNNPETTWEVVNCDSEHNHD  164 (181)
T ss_dssp             TSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGGGTCSSEEEEEEEECHHHHHHHC
T ss_pred             CCCCccCCCcccCcccccCccccccccchH-HHhhhhcCCCceeEEEEEeCCCCCCcC
Confidence                                        45 678888899999999999998754443

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=98.20  E-value=4.5e-07  Score=64.86  Aligned_cols=37  Identities=32%  Similarity=0.772  Sum_probs=33.9

Q ss_pred             CCCCcccccc-ccc-------------------------HHHHHhhc----ccCceEeEEEEEeecc
Q 045589           26 NSGVTCGVCL-IKC-------------------------PIFQHIAH----YKAGIVPVRYRRVACG   62 (136)
Q Consensus        26 ~~g~~CG~C~-v~C-------------------------~aF~~ia~----~~~G~i~i~yrrV~C~   62 (136)
                      ++++.||+|+ |+|                         .||.+|+.    ...|+++|+|++|+|+
T Consensus        58 ~~g~~CG~cv~Vtn~~nGksV~V~VvD~CP~ggLDLS~~~AF~~Ia~~g~G~~~G~i~V~w~~V~C~  124 (125)
T 1bw3_A           58 RGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             CSGGGTTCEEEEEETTTTEEEEEEEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCC
T ss_pred             CCCcccCCEEEeEeCCCCCEEEEEEEEeCCCCCCCCCCHHHHHHHhccCCcccCcEEEEEEEEEeCC
Confidence            7889999999 964                         79999998    7889999999999996

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=92.33  E-value=0.15  Score=35.80  Aligned_cols=34  Identities=18%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             CCCcccccc-ccc---------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589           27 SGVTCGVCL-IKC---------------------PIFQHIAHY---KAGIVPVRYRRVA   60 (136)
Q Consensus        27 ~g~~CG~C~-v~C---------------------~aF~~ia~~---~~G~i~i~yrrV~   60 (136)
                      |...||.|+ ++=                     +||..|.+-   ..|+|+++|++|+
T Consensus        56 ns~~CGtC~~lty~g~si~vlaID~a~~Gfnis~~A~n~LT~G~a~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           56 NSASCGTCWKLQYSGHTIYVLAVDHAASGFNIALDAMNALTGGQAVQLGRVSATATQVP  114 (120)
T ss_dssp             TCTTTTCEEEEEETTEEEEEEEEEECSSSEEECHHHHHHHHTSCHHHHCEEECEEEEEC
T ss_pred             CCCCCCceEEEEECCeEEEEEEEecCCCceeecHHHHHHhhCCcceeeeeEeEEEEEcC
Confidence            458999999 863                     888888643   3489999999986

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=91.89  E-value=0.22  Score=35.42  Aligned_cols=44  Identities=25%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             eeeEecc-cccCCCCcccccc-ccc----------------------HHHHHhhc-ccCceE-eEEEEEee
Q 045589           16 SSAALST-ALFNSGVTCGVCL-IKC----------------------PIFQHIAH-YKAGIV-PVRYRRVA   60 (136)
Q Consensus        16 ~~aA~~~-~~f~~g~~CG~C~-v~C----------------------~aF~~ia~-~~~G~i-~i~yrrV~   60 (136)
                      ++.+... +-|| ...||.|+ ++=                      +||..|.+ ...|+| +++|++|+
T Consensus        51 ~IGga~~iagWN-S~~CGtC~~lty~ng~sI~vlaID~A~~gFnIs~~Amn~LT~G~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A           51 NVGGIPDIAGWD-SPSCGTCWKVTIPNGNSIFIRGVDSGRGGFNVNPTAFTKLVGSTEAGRVDNVNYVQVD  120 (129)
T ss_dssp             SEEEETTCCSTT-CTTCSCEEEEEETTTEEEEEEEEEECSSSEEECHHHHHHHHSSSSSCCBCSCEEEECC
T ss_pred             eeccchhhccCC-CCCCCceEEEEEcCCCEEEEEEEccCCCceeehHHHHHHhcCCcccCcEeEEEEEEcC
Confidence            4544443 3466 79999999 852                      78888876 567999 99999985

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=90.36  E-value=0.41  Score=33.84  Aligned_cols=34  Identities=24%  Similarity=0.514  Sum_probs=26.7

Q ss_pred             CCCcccccc-ccc-------------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589           27 SGVTCGVCL-IKC-------------------------PIFQHIAHY---KAGIVPVRYRRVA   60 (136)
Q Consensus        27 ~g~~CG~C~-v~C-------------------------~aF~~ia~~---~~G~i~i~yrrV~   60 (136)
                      |...||.|| ++=                         +||..|.+-   ..|+|+++|++|+
T Consensus        57 nS~~CGtC~~lty~g~~~~~si~vlaID~a~~Gfnis~~Amn~LT~G~a~~lG~V~~~~~~V~  119 (125)
T 3suk_A           57 NSPACGNCYTISFTFQGVTRSINLVAIDHAGNGFNVAQAAMDELTNGNAVALGTIDVQSQQVA  119 (125)
T ss_dssp             TCTTTTCEEEEEEEETTEEEEEEEEEEEECSSSEEECHHHHHHHHTSCHHHHCEEEEEEEEEC
T ss_pred             CCCCCCeeEEEEEcCCCcceEEEEEEEecCCCceeecHHHHHHhcCCcccccceEeEEEEEcC
Confidence            348999999 852                         788888643   3489999999986

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=89.27  E-value=0.47  Score=33.40  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             eeEecc-cccCCCCcccccc-ccc-----------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589           17 SAALST-ALFNSGVTCGVCL-IKC-----------------------PIFQHIAHY---KAGIVPVRYRRVA   60 (136)
Q Consensus        17 ~aA~~~-~~f~~g~~CG~C~-v~C-----------------------~aF~~ia~~---~~G~i~i~yrrV~   60 (136)
                      +++... +-|+. ..||.|+ ++=                       +||..|.+-   ..|+|+++|++|+
T Consensus        46 IGg~~~V~gwnS-~~CGtC~~lty~~~g~si~vlaID~a~~Gfnis~~Amn~LT~G~a~~lG~V~a~~~qV~  116 (122)
T 3sul_A           46 VGAVDTITGWNS-ESCGTCYQITWSGTGKTIHVVGVDVAGNGFNVGQRAMDDLTNGQAVALGNIDVTATLVD  116 (122)
T ss_dssp             EEEETTCCSTTC-TTTTCEEEEEETTTTEEEEEEEEEECSSSEEECHHHHHHHHTSCHHHHSEEEEEEEEEC
T ss_pred             cccccccccCCC-CCCCceEEEEEcCCCcEEEEEEEecCCCceeehHHHHHHhcCCcceecceEeEEEEEcC
Confidence            544332 34555 9999999 852                       888888643   3489999999986

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=89.00  E-value=0.51  Score=33.41  Aligned_cols=34  Identities=24%  Similarity=0.554  Sum_probs=26.8

Q ss_pred             CCCcccccc-ccc--------------------------HHHHHhhcc---cCceEeEEEEEee
Q 045589           27 SGVTCGVCL-IKC--------------------------PIFQHIAHY---KAGIVPVRYRRVA   60 (136)
Q Consensus        27 ~g~~CG~C~-v~C--------------------------~aF~~ia~~---~~G~i~i~yrrV~   60 (136)
                      |...||.|| ++=                          +||..|.+-   ..|+|+++|++|+
T Consensus        56 ns~~CGtC~~lty~g~~~~~~si~vlaID~a~~Gfnis~~Amn~LT~g~a~~lG~V~~~~~~V~  119 (127)
T 3suj_A           56 NSPNCGSCYQLTYSSAHTTPKSIYMVAIDRSAEGFTASKQAMDDLTNKRAEELGTVNVDVRKVD  119 (127)
T ss_dssp             TCTTTTCEEEEEECCSSSCCEEEEEEEEEECSSSEEECHHHHHHHHTSCHHHHSSEEEEEEEEC
T ss_pred             CCCCCCceEEEEECCCCCcceEEEEEEEecCCCceeecHHHHHHhcCCccccceeEEEEEEEeC
Confidence            458999999 852                          888888643   3489999999986

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=80.99  E-value=1.9  Score=30.85  Aligned_cols=35  Identities=14%  Similarity=0.495  Sum_probs=26.4

Q ss_pred             CCCCcccccc-ccc-----------------------HHHHHhhcc-------cCceEeE-EEEEee
Q 045589           26 NSGVTCGVCL-IKC-----------------------PIFQHIAHY-------KAGIVPV-RYRRVA   60 (136)
Q Consensus        26 ~~g~~CG~C~-v~C-----------------------~aF~~ia~~-------~~G~i~i-~yrrV~   60 (136)
                      -+...||.|+ ++=                       +|+..|.+-       ..|+|++ +|++|+
T Consensus        55 wns~~CGtCwkLtY~G~sI~vlaID~a~~g~~FnIs~~Amn~LT~G~~a~~a~elG~Vda~~~~qVd  121 (136)
T 3sum_A           55 EAQTECGSCWKLRYKGNHAFVTVVDRVEEANLFVGGTDLVKNLTTFNGAPEGYDWGTAQLFSAYQVD  121 (136)
T ss_dssp             BTTBCTTCEEEEEETTEEEEEEEEECCCSTTEEEECHHHHHHHTCBTTBCHHHHHSEEECSEEEEEC
T ss_pred             cCCCCCCceEEEEECCeEEEEEEEecCCCcceEeehHHHHHHHhCCCccccceecceeeeeEEEEcC
Confidence            5669999999 863                       666666532       2489999 999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	3e-18
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	8e-14
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	3e-12
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	1e-07
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	7e-04

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 72.1 bits (177), Expect = 3e-18
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 26/91 (28%)

Query: 67  IRFTINGHS--YFNLVLITNVGGAGDVLSVSIKGSRT----------------------- 101
           + F +   S   +  +L+  V G GDV++V IK                           
Sbjct: 3   VTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLT 62

Query: 102 -ALSFKVTTSDGCLFISINVARPNWSFGQTY 131
              + + TT  G    + +V    W    +Y
Sbjct: 63  GPFTVRYTTEGGTKTEAEDVIPEGWKADTSY 93

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 60.6 bits (147), Expect = 8e-14
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 24/89 (26%)

Query: 67  IRFTINGHS--YFNLVLITNVGGAGDVLSVSIKGSRT----------------------A 102
           + FT+   S      VL+   G     + +   GS                         
Sbjct: 4   VTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGP 63

Query: 103 LSFKVTTSDGCLFISINVARPNWSFGQTY 131
            +F+  T  G   +  +V    ++ G TY
Sbjct: 64  FNFRFLTEKGMKNVFDDVVPEKYTIGATY 92

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 57.7 bits (139), Expect = 3e-12
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 40/103 (38%)

Query: 4   GYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC------------------------ 38
           GY ++    +   +   +T +F SG  CG C  IKC                        
Sbjct: 41  GYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA 100

Query: 39  ---------------PIFQHIAHYKAGIVPVRYRRVACGKSGG 66
                                    AG + +++RRV C    G
Sbjct: 101 PYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG 143

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 3/40 (7%), Positives = 7/40 (17%)

Query: 39  PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFN 78
                +           +  V C            +S + 
Sbjct: 135 NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 12/47 (25%)

Query: 4  GYGNL-----YSQGYGTSSAALSTALFNS------GVTCGVCL-IKC 38
          G G       +    G+  AA S   F+S      G  CG C+ +  
Sbjct: 31 GCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTT 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.93
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.89
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.87
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.87

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.93  E-value=5.9e-26  Score=154.98  Aligned_cols=68  Identities=24%  Similarity=0.460  Sum_probs=64.2

Q ss_pred             ceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc------------------------eEEEEEEecCCcEEEEcc
Q 045589           66 GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT------------------------ALSFKVTTSDGCLFISIN  119 (136)
Q Consensus        66 ~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~------------------------pls~Rvts~~G~~vv~~~  119 (136)
                      +|+|+|+  |||||++++|.|++|++||++||||++++                        ||+||||+.+|+++++.|
T Consensus         2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~~~G~~~v~~n   81 (95)
T d1n10a1           2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAED   81 (95)
T ss_dssp             CCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEESSSCEEEEEE
T ss_pred             cEEEEECCCCCcceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEEEcCCCEEEECc
Confidence            6899998  68999999999999999999999997642                        999999999999999999


Q ss_pred             eeCCCCCCCeEEec
Q 045589          120 VARPNWSFGQTYNG  133 (136)
Q Consensus       120 viP~~w~~G~tY~s  133 (136)
                      |||++|+||+||+|
T Consensus        82 ViP~~W~~G~tY~s   95 (95)
T d1n10a1          82 VIPEGWKADTSYES   95 (95)
T ss_dssp             EECSSCCSSEEEEC
T ss_pred             eECCCCCCCCEEeC
Confidence            99999999999986

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.89  E-value=2.3e-24  Score=156.70  Aligned_cols=66  Identities=32%  Similarity=0.668  Sum_probs=62.5

Q ss_pred             CccccCCCCCCCCCceeeEecccccCCCCcccccc-ccc--------------------------------HHHHHhhcc
Q 045589            1 RSFGYGNLYSQGYGTSSAALSTALFNSGVTCGVCL-IKC--------------------------------PIFQHIAHY   47 (136)
Q Consensus         1 GaCGyg~~~~~~~~~~~aA~~~~~f~~g~~CG~C~-v~C--------------------------------~aF~~ia~~   47 (136)
                      ||||||+++..|++.|+||||++||++|.+||+|| |+|                                +||.+||++
T Consensus        38 GACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~sv~V~vtd~c~~~~~~~hfDLS~~AF~~iA~~  117 (143)
T d1n10a2          38 GACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKK  117 (143)
T ss_dssp             CTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSSCSSSSEEEEEHHHHHTTBST
T ss_pred             ccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCCCEEEEEEecccCCCCCccccCCHHHHhhhccc
Confidence            79999999999999999999999999999999999 987                                999999985


Q ss_pred             -------cCceEeEEEEEeecccCCc
Q 045589           48 -------KAGIVPVRYRRVACGKSGG   66 (136)
Q Consensus        48 -------~~G~i~i~yrrV~C~~~g~   66 (136)
                             ++|+|||+||||+|+++|+
T Consensus       118 ~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2         118 GDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             TCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             cchhhheecCccceEEEEEeccCCCC
Confidence                   7899999999999999874

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.87  E-value=8.3e-25  Score=164.07  Aligned_cols=78  Identities=19%  Similarity=0.298  Sum_probs=70.7

Q ss_pred             CccccCCCCC-----CCCCceeeEecccccCC------CCcccccc-ccc------------------------------
Q 045589            1 RSFGYGNLYS-----QGYGTSSAALSTALFNS------GVTCGVCL-IKC------------------------------   38 (136)
Q Consensus         1 GaCGyg~~~~-----~~~~~~~aA~~~~~f~~------g~~CG~C~-v~C------------------------------   38 (136)
                      ||||||++..     .+|+.|+||||++||++      |++||+|| |+|                              
T Consensus        28 GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~~~~~~g~sV~V~iTd~CP~n~  107 (180)
T d1wc2a1          28 GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIY  107 (180)
T ss_dssp             TTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSST
T ss_pred             CCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccCCCCCCCCcEEEEEEecCCCCC
Confidence            8999999843     35678999999999999      89999999 997                              


Q ss_pred             ---------------------------HHHHHhhcccCceEeEEEEEeecccCCceEEEEccccceE
Q 045589           39 ---------------------------PIFQHIAHYKAGIVPVRYRRVACGKSGGIRFTINGHSYFN   78 (136)
Q Consensus        39 ---------------------------~aF~~ia~~~~G~i~i~yrrV~C~~~g~i~~~v~~~~~~~   78 (136)
                                                 +||.+||...+|+|+|+||||||+..+++++++.++++|.
T Consensus       108 ~n~gWCn~p~~~~~~n~~g~~~HFDLs~af~~ia~~~~G~v~V~yrrV~C~~~g~~~~~~~~n~~~~  174 (180)
T d1wc2a1         108 PNQDWCNQGSQYGGHNKYGYELHLDLENGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG  174 (180)
T ss_dssp             TSTTTSCCSSSSSCCCTTSCSEEEEEECTTSTTGGGTCSSEEEEEEEECHHHHHHHCTTSCCHHHHT
T ss_pred             CCCCccCCccccccccccCcccceechHHHHHHhhhcCCcceeEEEEeeCCCcccccccccCCcchh
Confidence                                       3999999999999999999999999999999988888773

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.87  E-value=1.7e-22  Score=137.25  Aligned_cols=66  Identities=20%  Similarity=0.366  Sum_probs=60.0

Q ss_pred             ceEEEEc--cccceEEEEEEeecCCCCeEEEEEeccCc------------------------eEEEEEEecCCcEEEEcc
Q 045589           66 GIRFTIN--GHSYFNLVLITNVGGAGDVLSVSIKGSRT------------------------ALSFKVTTSDGCLFISIN  119 (136)
Q Consensus        66 ~i~~~v~--~~~~~~~v~v~n~~G~g~I~~Vevk~s~~------------------------pls~Rvts~~G~~vv~~~  119 (136)
                      .|+|+|+  ||+||+++++.|++|  ||.+|||+++++                        |||||||+++|++++++|
T Consensus         3 ~v~f~v~~GSnp~~lav~v~~~gg--~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~gplsfRvt~~~G~~~v~~n   80 (94)
T d1whoa_           3 KVTFTVEKGSNEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDD   80 (94)
T ss_dssp             SEEEEECTTCBTTEEEEEEEETTC--CEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCSSEEEEEEETTSCEEEEEE
T ss_pred             cEEEEECCCCCccEEEEEEEEcCC--CEEEEEEEECCCCceeECccCcCccEEECCCCCCCccEEEEEEEcCCCEEEEcc
Confidence            5899998  689999999999985  899999996542                        999999999999999999


Q ss_pred             eeCCCCCCCeEEec
Q 045589          120 VARPNWSFGQTYNG  133 (136)
Q Consensus       120 viP~~w~~G~tY~s  133 (136)
                      |||++|++|+||++
T Consensus        81 ViP~~W~~G~ty~~   94 (94)
T d1whoa_          81 VVPEKYTIGATYAP   94 (94)
T ss_dssp             EECSSCCTTCEECC
T ss_pred             eECCCCCCCCEECc
Confidence            99999999999974