Citrus Sinensis ID: 045590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDGKEVEIPKE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccHHHHHHHHcccHHHHHHHcccHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEccEEEEEEccccccccccccccccccccEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEcccccccccccEEEEEEEcccEEEEEEEEEEccccccHHHHHcccEEEEccccccccccccccccccEEEEcccEEEEEEEEEEEcccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEEccEcccccEEEEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEEEccccccccEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
MNVDLLPEDCFAHILsytsprdacrLSLVSSTVRfaadsdnvwekflpvdymeilpRLVLPLVYFSKKELFMRLcspvlidqgkktfslekstskKRYILGARELSitwannplywtwkpflQSRFTEVAELRTISWLQITgkintktispktQYAAYLIVKFAErafgldslpsevslevgngsfksqGTVYLRWQERKKQLECLGHLYFLHRDEALRSrvsegdgerfareredgwieielgsfyndggdgkeveipke
Flexible Loop (DISEMBL)
MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSpvlidqgkktfslekstskkryILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWlqitgkintktispktQYAAYLIVKFAERAFGLDSLPSEVslevgngsfksqGTVYLRWQERKKQLECLGHLYflhrdealrsrvsegdgerfareredgwieielgsfyndggdgkeveipke
Low Complexity Region (SEG)
MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDGKEVEIPKE
Disordered region (IsUnstruct)
****LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEAL*****************DGWIEIELGSFYN*************
Disordered Region (DISOPRED)
*NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILP**V*****FSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLH*****************AREREDGWIEIELGSFYNDGGDGKEVEIPK*
Disordered Region (DISEMBL)
MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDGKEVEIPKE
Disordered Region (DISPRO)
**VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHR*************ERFAREREDGWIEIELGSFYNDGGDGKEVEIP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDGKEVEIPKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
O80494	289	F-box protein PP2-B15 OS=	yes	no	0.950	0.858	0.440	1e-56
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.873	0.838	0.395	1e-49
Q9C7J9	284	F-box protein PP2-B13 OS=	no	no	0.961	0.883	0.430	2e-48
Q9C7K0	282	F-box protein VBF OS=Arab	no	no	0.954	0.882	0.426	8e-48
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.839	0.684	0.414	6e-45
Q9ZVR5	310	Putative F-box protein PP	no	no	0.862	0.725	0.4	7e-44
Q9FLU7	251	Putative F-box protein PP	no	no	0.850	0.884	0.415	9e-44
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.961	0.747	0.362	2e-41
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.919	0.786	0.374	6e-40
Q9ZVR0	307	Putative F-box protein PP	no	no	0.858	0.729	0.38	1e-39

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/252 (44%), Positives = 154/252 (61%), Gaps = 4/252 (1%)

Query: 5   LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL-V 63
           +LPE C A ILS+T+P D    + VSS  R A DSD VWEKFLP DY  ++ R   P  +
Sbjct: 2   MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query: 64  YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
           + SKKEL+  LC  +LID G+K F +EK + K  YIL +R+LSITW++   YW+W P   
Sbjct: 62  FSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSD 121

Query: 124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
           SRF+E  +L    WL+I GKI T  +SP T Y AYLI+K   RA+GLD +P+E S++VGN
Sbjct: 122 SRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGN 181

Query: 184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIEL 243
           G  K + T       +K+Q+E    +++  R++ + +        R    R+DGW+EIEL
Sbjct: 182 GEKKIKSTYLSCLDNKKQQME---RVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIEL 238

Query: 244 GSFYNDGGDGKE 255
           G F    G+G +
Sbjct: 239 GEFETGSGEGDD 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/258 (39%), Positives = 150/258 (58%), Gaps = 30/258 (11%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           D  PEDC ++I+S+T+PRDAC  + VS T      SD +WEKFLP DY  ++P      V
Sbjct: 15  DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPP---SRV 71

Query: 64  YFSKKELFMRLCS-PVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
           + SKKEL+  LC+ PVL D  KK+  LEK++ K+  +L A  LSI W +NP YW W P  
Sbjct: 72  FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query: 123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVG 182
           +SRF +VA+LR + W +I G+ NT+ +SP+T+Y+AY++ K  ++ +G  ++  E ++ V 
Sbjct: 132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVV 191

Query: 183 NGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIE 242
                         QE  ++L C        R   ++            ++REDGW+EIE
Sbjct: 192 G-------------QEPSRRLICFSEAIRRGRRNVVK-----------PKQREDGWMEIE 227

Query: 243 LGSFYNDGG--DGKEVEI 258
           LG F+NDGG  D  E+E+
Sbjct: 228 LGEFFNDGGIMDNDEIEM 245

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7J9|P2B13_ARATH F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/258 (43%), Positives = 158/258 (61%), Gaps = 7/258 (2%)

Query: 5   LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV-LPLV 63
           +LPE C A+IL++TSP DA   S VSS  R A DSD VWEKFLP  Y  ++ +      +
Sbjct: 3   MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRI 62

Query: 64  YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
           + SKKE++  LC  +LID  +K F + K + K  YIL AR++SIT++++  Y +W     
Sbjct: 63  FSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122

Query: 124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
           SRF+E AEL T   L+I GKI T  +SP T+Y AYLI+K    A+GLD +P+E S++  N
Sbjct: 123 SRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKN 182

Query: 184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDE--ALRSRVSEGDGERF-AREREDGWIE 240
           G   ++ T YL   + KKQ   +  L++ +R+E  A+      GDG+R   + R+DGW+E
Sbjct: 183 GQ-NNKNTTYLCCLDEKKQQ--MKRLFYGNREERMAMTVEAVGGDGKRREPKARDDGWLE 239

Query: 241 IELGSFYNDGGDGKEVEI 258
           IELG F    G+  EV +
Sbjct: 240 IELGEFVTREGEDDEVNM 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7K0|VBF_ARATH F-box protein VBF OS=Arabidopsis thaliana GN=VBF PE=1 SV=1

 Score =  190 bits (483), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 156/260 (60%), Gaps = 11/260 (4%)

Query: 5   LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV-LPLV 63
           +LPE C A+IL++TSP DA   S VSS  R A DSD VWEKFLP DY  ++ +       
Sbjct: 3   MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query: 64  YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
             SKKE++  LC  +LID  +K F + K + K  Y+L AR++SIT +++  YW+W     
Sbjct: 63  ISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122

Query: 124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
           SRF+E AEL     L+I GKI T+ +S  T+Y AYLIVK  + A+GLD +P+E S++  N
Sbjct: 123 SRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKN 182

Query: 184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDE--ALRSRVSEGDGERFARE---REDGW 238
           G      T      E+K+Q++    L++ +R+E  A+      GDG+R  RE   R+DGW
Sbjct: 183 GQISKSATYLCCLDEKKQQMK---RLFYGNREERMAMTVEAVGGDGKR--REPKCRDDGW 237

Query: 239 IEIELGSFYNDGGDGKEVEI 258
           +EIELG F    G+  EV +
Sbjct: 238 MEIELGEFETREGEDDEVNM 257

Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  181 bits (458), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/251 (41%), Positives = 149/251 (59%), Gaps = 32/251 (12%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           D+LPEDC ++I+S+TSPRDAC  + VS T   A  SD VW+KFLP +Y  ++ R     V
Sbjct: 62  DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRV 118

Query: 64  YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
           + SKKEL+  LC +PVLI+ GKK+F LEK++ K+  +L ++EL ITW ++P YW W    
Sbjct: 119 FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIP 178

Query: 123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVG 182
           +SRF ++AEL  + W +I GK + + +SP T+Y+AY++ K  +R  GL  LP EV L   
Sbjct: 179 ESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLG-- 236

Query: 183 NGSFKSQGTVYLRWQERKKQLECLGHLYFL----HRDEALRSRVSEGDGERFAREREDGW 238
                      L  QE  K+      +YF+     R       V++ D      +REDGW
Sbjct: 237 -----------LVGQESSKRF-----IYFIGPRDRRGRRETRDVTKPD------QREDGW 274

Query: 239 IEIELGSFYND 249
           +E ELG F+N+
Sbjct: 275 MEAELGEFFNE 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 25/250 (10%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           D LPEDC ++I+S+TSPRDAC  + VS T   A +SD+VW+KFLP DY  ++P      V
Sbjct: 48  DNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPP---SRV 104

Query: 64  YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARE-LSITWANNPLYWTWKPF 121
           + SKKEL+  +C +PVL++ G K+F LEK   KK ++L  ++ + ITW + P YW W   
Sbjct: 105 FSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISI 164

Query: 122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
            ++RF EV EL  + W ++ G +NTK +SP T+Y+AY++ K       L  +P E     
Sbjct: 165 PEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVE----- 219

Query: 182 GNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEI 241
                    TV L  QE  ++     H+YF+   +  R R +  D  R   +R+DGW+E 
Sbjct: 220 --------ATVGLVGQESSQR-----HIYFVGPSDQRRDRETR-DVTR-PTKRKDGWMEA 264

Query: 242 ELGSFYNDGG 251
           ELG F+N+ G
Sbjct: 265 ELGQFFNESG 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/260 (41%), Positives = 148/260 (56%), Gaps = 38/260 (14%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           MN   LPE+C A ++S+TSP DACR+S VS  +R AADS+  WE+FLP DY   +     
Sbjct: 1   MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDN--- 57

Query: 61  PLVYFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWK 119
            L  FS K+LF+R C SP+LI+ G+ +F +EK + KK ++L AR+L I W ++P +W W 
Sbjct: 58  SLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWV 117

Query: 120 PFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAER-AFGLDSLPSEVS 178
               SRF EVA L  + W +I GKI+T  +S  T Y+AYL+ K  E  +FG +SLP EVS
Sbjct: 118 SIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVS 177

Query: 179 LEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGW 238
                  F+S  T                   + +R   L+S   E         REDGW
Sbjct: 178 -------FRSTRTEV-----------------YNNRRVFLKSGTQES--------REDGW 205

Query: 239 IEIELGSFYNDGGDGKEVEI 258
           +EIELG +Y  G D +E+E+
Sbjct: 206 LEIELGEYYV-GFDDEEIEM 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/281 (36%), Positives = 154/281 (54%), Gaps = 30/281 (10%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           D LPEDC + ++S+TSPRDAC ++ VS +V+ AA SD VWE FLP +Y  ++   +    
Sbjct: 33  DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLV---LQSAN 89

Query: 64  YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
           + SKKE+F+ L  + VL++ GKK+F +EK++ KK Y+L A EL+I W ++P YW W    
Sbjct: 90  HLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVP 149

Query: 123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAE-RAFGLDSLPSEVSLEV 181
           +S+F +VAELR + W ++ GKI+   +S  T Y+ Y++ K A  R++G D +P E  +  
Sbjct: 150 ESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGF 209

Query: 182 GNGSFKSQGTVYLRW--QERKKQLECLGHLYFLHRDEALRSR-----------------V 222
             G   ++ +VY      + +        + +     A R R                  
Sbjct: 210 -VGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGER 268

Query: 223 SEGDGERFAREREDGWIEIELGSFY-NDGGDG----KEVEI 258
             G      +ER DGW E+ELG FY N+GG G     E+EI
Sbjct: 269 ERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEI 309

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 147/259 (56%), Gaps = 19/259 (7%)

Query: 3   VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL 62
           +D LPE+C + I+S+TSP+DAC L+ VS T   A  SD VWEKF+P +Y  ++ +     
Sbjct: 36  LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQ-SRAF 94

Query: 63  VYFSKKELFMRLCS-PVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPF 121
            + SKKEL+  LC   VLID GKK+  +EK+ +K+  ++ A  L+I W N+P  W W P 
Sbjct: 95  KFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query: 122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
            Q+RF  VAEL  +   +I G+IN++ ISPKT+Y+AY++ K     +G +++  EV + V
Sbjct: 155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query: 182 GNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEI 241
                +     Y+ + E                DE  R R   G        R+DGW+EI
Sbjct: 215 VGQDLEESCRRYICFDE--------------TMDEQFRRR-DRGKNLVKPERRKDGWMEI 259

Query: 242 ELGSFYNDGG--DGKEVEI 258
           ++G F+N+GG  +  E+E+
Sbjct: 260 KIGEFFNEGGLLNDDEIEM 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 26/250 (10%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           D LPEDC ++I+S+TSPRD C  + VS +   A   D++WEKFLP +Y  ++P      V
Sbjct: 46  DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPW---RV 102

Query: 64  YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
           + SKK+L+  LC  PVL++ GKK+F LE ++ KK  +L A+EL IT  NNP YW W    
Sbjct: 103 FSSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELC 162

Query: 123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVG 182
           +S F +V EL      Q+ G ++T+ +S  T Y+ Y++ K  +   GL  LP    ++VG
Sbjct: 163 ESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLP----IQVG 218

Query: 183 NGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEAL-RSRVSEGDGERFAREREDGWIEI 241
            G          + QE  KQ  C         DE+  +++         +++R DGW+E 
Sbjct: 219 VG---------FKGQEMPKQFICF--------DESTDKTKEWPKKKLMKSKKRGDGWMEA 261

Query: 242 ELGSFYNDGG 251
           E+G F+NDGG
Sbjct: 262 EIGDFFNDGG 271

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
147839228	277	hypothetical protein VITISV_022466 [Viti	0.946	0.891	0.658	2e-89
225450743	277	PREDICTED: F-box protein PP2-B15-like [V	0.946	0.891	0.646	2e-87
255542808	288	conserved hypothetical protein [Ricinus	0.911	0.826	0.625	7e-80
225450747	285	PREDICTED: F-box protein PP2-B15 [Vitis	0.950	0.870	0.573	8e-76
224102167	287	predicted protein [Populus trichocarpa]	0.961	0.874	0.535	2e-73
225450745	301	PREDICTED: F-box protein PP2-B15-like [V	0.954	0.827	0.547	8e-72
147839229	288	hypothetical protein VITISV_022467 [Viti	0.942	0.854	0.557	1e-71
296089714	694	unnamed protein product [Vitis vinifera]	0.739	0.278	0.671	1e-70
255542810	283	conserved hypothetical protein [Ricinus	0.965	0.890	0.523	5e-70
357511811	306	F-box protein PP2-B15 [Medicago truncatu	0.888	0.758	0.548	3e-67

>gi|147839228|emb|CAN65690.1| hypothetical protein VITISV_022466 [Vitis vinifera]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/252 (65%), Positives = 198/252 (78%), Gaps = 5/252 (1%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           MN +LLP+DC +HILS TSPRDACR  LVS+TVR A DSD+VWEKFLP DY EIL RLV 
Sbjct: 1   MNFELLPQDCISHILSCTSPRDACRSELVSTTVRHAGDSDSVWEKFLPSDYQEILSRLVS 60

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PLV+ SKKEL+ +LCSP+LID+G+K+FS+ K+T KK Y+L AR LSITW++N LYW+WKP
Sbjct: 61  PLVFASKKELYSKLCSPLLIDEGRKSFSISKTTGKKGYMLSARNLSITWSSNTLYWSWKP 120

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
            LQSRF E  ELRTI WL+I GKI+T  +SPKT Y AYLIVKFA+RA+GLDSLPSEVS+ 
Sbjct: 121 LLQSRFAETVELRTICWLEIQGKISTSVLSPKTTYRAYLIVKFADRAYGLDSLPSEVSVV 180

Query: 181 VGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIE 240
           VG    +SQG  YLR  E  +    L  + FL+R EALRS+VS+G+ ER   EREDGW E
Sbjct: 181 VGK--HQSQGIAYLRRPESNRP--ALERVCFLNRIEALRSKVSKGE-ERVPYEREDGWFE 235

Query: 241 IELGSFYNDGGD 252
           +ELG FYNDGGD
Sbjct: 236 VELGEFYNDGGD 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450743|ref|XP_002279225.1| PREDICTED: F-box protein PP2-B15-like [Vitis vinifera]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/252 (64%), Positives = 196/252 (77%), Gaps = 5/252 (1%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           MN +LLP+DC +HILS TSPRDACR  LVS+TVR A DSD+VWEKFLP DY EIL RLV 
Sbjct: 1   MNFELLPQDCISHILSCTSPRDACRSGLVSTTVRHAGDSDSVWEKFLPSDYQEILSRLVS 60

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PLV+ SKKEL+ +LC P+LID+G+K+FS+ K+T +K Y L AR LSITW++N LYW+WKP
Sbjct: 61  PLVFASKKELYSKLCRPLLIDEGRKSFSISKTTGEKGYTLSARNLSITWSSNALYWSWKP 120

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
            LQSRF E  ELRTI WL+I GKI+T  +SPKT Y AYLIVKFA+RA+GLD+LPSEVS+ 
Sbjct: 121 LLQSRFAETVELRTICWLEIQGKISTCMLSPKTTYRAYLIVKFADRAYGLDALPSEVSVV 180

Query: 181 VGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIE 240
           VG    +SQG  YLR  E  +    L  + FL+R EALRS+VS+G+ ER   EREDGW E
Sbjct: 181 VGK--HQSQGIAYLRRPESNRP--TLERVCFLNRIEALRSKVSKGE-ERVPHEREDGWFE 235

Query: 241 IELGSFYNDGGD 252
           +ELG FYNDGGD
Sbjct: 236 VELGEFYNDGGD 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542808|ref|XP_002512467.1| conserved hypothetical protein [Ricinus communis] gi|223548428|gb|EEF49919.1| conserved hypothetical protein [Ricinus communis]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 155/248 (62%), Positives = 185/248 (74%), Gaps = 10/248 (4%)

Query: 3   VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL 62
           +DLLPEDCFAHILS+ SP+DAC  S+VSS VR +AD D VWEKFLP DY EIL RLV P+
Sbjct: 1   MDLLPEDCFAHILSFISPKDACCTSIVSSAVRSSADLDTVWEKFLPSDYPEILFRLVSPI 60

Query: 63  VYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
            Y +KKELF RLC+P  +D+G+K  SL+KST KKRY+LG+RELSI+WANNPLYW+WK   
Sbjct: 61  NYSTKKELFTRLCNPHFLDEGRKIISLDKSTGKKRYMLGSRELSISWANNPLYWSWKIHP 120

Query: 123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVG 182
           QSRF+EVAELRTI WLQ+ GK NT+ +SP+T Y A LIVKFA+RA+GLD+LPSE  LEVG
Sbjct: 121 QSRFSEVAELRTICWLQVHGKFNTQMLSPRTVYKANLIVKFADRAYGLDTLPSETFLEVG 180

Query: 183 NGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAR--EREDGWIE 240
           N  +K++G VYLR  + KK          ++R EA R      DG       EREDGW E
Sbjct: 181 N--YKTKGKVYLRRGQGKKTANG------VNRREASRVTAYSRDGSNSTSPYEREDGWTE 232

Query: 241 IELGSFYN 248
           IELGSFYN
Sbjct: 233 IELGSFYN 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450747|ref|XP_002279245.1| PREDICTED: F-box protein PP2-B15 [Vitis vinifera]

 Score =  289 bits (740), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 145/253 (57%), Positives = 186/253 (73%), Gaps = 5/253 (1%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           +  + LPE C + ILS TSP DAC+ SLVS   R AA+SD VWE+FLP DY +IL RLV 
Sbjct: 4   LGFNKLPEGCVSIILSLTSPPDACKSSLVSPMFRAAAESDVVWERFLPADYHDILCRLVE 63

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PLV  S+KELF+RLC P+LID G K+F L+K + KK Y+L ARELSITW+N+P+YW+W+ 
Sbjct: 64  PLVCSSRKELFLRLCDPILIDGGSKSFRLDKWSGKKSYLLSARELSITWSNDPMYWSWRS 123

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
             +SRF+ VAELRT+ WL+I GKI T+ +SP T+Y AYLI+K + RA+GLD +PSE+S+E
Sbjct: 124 TPESRFSHVAELRTMCWLEIHGKIRTQMLSPNTKYGAYLIMKISNRAYGLDLMPSEISVE 183

Query: 181 VGNGSFKSQGTVYLRWQERK-KQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWI 239
           V N +    GT YLR  + K KQ+E    L++ +R E LRSRV EGDG R   EREDGW+
Sbjct: 184 VSNSTQVCNGTAYLRCSDSKNKQME---RLFYGNRREMLRSRVIEGDG-RVPCEREDGWM 239

Query: 240 EIELGSFYNDGGD 252
           E+ELG F+N  GD
Sbjct: 240 ELELGDFFNGEGD 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102167|ref|XP_002334203.1| predicted protein [Populus trichocarpa] gi|222870034|gb|EEF07165.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/254 (53%), Positives = 189/254 (74%), Gaps = 3/254 (1%)

Query: 5   LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY 64
           +LPE C + ILS+TSP+DAC+ SLVS+  + AADSD VWE+FLP DY +I+ +   P  +
Sbjct: 12  ILPEGCVSTILSFTSPQDACKSSLVSTIFQSAADSDIVWERFLPTDYQDIVSKSNFPFKF 71

Query: 65  FSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQS 124
            SKKELF++LC+ +LID G+K+F +EKS+ KK +IL AR+L ITW+N P YW W    +S
Sbjct: 72  SSKKELFLQLCNSLLIDGGRKSFRIEKSSGKKSFILSARDLHITWSNEPQYWHWASLPES 131

Query: 125 RFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGNG 184
           RF+EVA LRT+ WL+I GKI T+ +SP T+Y AYLI+K +ER++GLDS+PSE+S+EVGN 
Sbjct: 132 RFSEVAVLRTMCWLEIVGKIETQMLSPNTKYGAYLILKISERSYGLDSMPSEISVEVGNN 191

Query: 185 SFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELG 244
              S  T YLR  +   + + +  L++ +R E L+SRV+EGDG R A EREDGW+EIELG
Sbjct: 192 Q-GSTTTAYLRLAQEHARKQQMERLFYGNRTERLKSRVAEGDG-RVASEREDGWLEIELG 249

Query: 245 SFYNDGGDGKEVEI 258
            F++ G + +EV++
Sbjct: 250 EFFS-GENDEEVKM 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450745|ref|XP_002283524.1| PREDICTED: F-box protein PP2-B15-like [Vitis vinifera]

 Score =  276 bits (705), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 139/254 (54%), Positives = 181/254 (71%), Gaps = 5/254 (1%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           + ++ LPE C + ILS TSP DAC+ SLVSS  R AA+SD VWE+FLP DY +IL RL  
Sbjct: 18  VGLNTLPEGCVSTILSLTSPPDACKSSLVSSIFRAAAESDVVWERFLPADYHDILSRLAE 77

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PLV  SKKELF+RLC P LID GKK F L+K + K  Y++ ARELSI+W+++P +W+W  
Sbjct: 78  PLVVSSKKELFLRLCDPSLIDGGKKRFRLDKWSGKNSYMMSARELSISWSHDPTHWSWTS 137

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
             +SRF+EVAEL+T+  L+I GKI T+ +SP T+Y AYLI+K + RAFGLD +PSE+S+E
Sbjct: 138 IPESRFSEVAELKTVCRLEIHGKIRTQMLSPNTKYGAYLIIKISNRAFGLDLMPSEISVE 197

Query: 181 VGNGSFKSQGTVYLRWQERK-KQLECLGHLYFLHRDEALRSRVSEGDGERFARERE-DGW 238
           V N +    GT YLR  + K KQ+E    L++ +R E LRSRV EGDG      R+ DGW
Sbjct: 198 VSNSTQVCNGTAYLRCSDSKNKQME---RLFYGNRGEMLRSRVIEGDGRVPCERRDGDGW 254

Query: 239 IEIELGSFYNDGGD 252
           +E+ELG F+N  GD
Sbjct: 255 MELELGDFFNGEGD 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839229|emb|CAN65691.1| hypothetical protein VITISV_022467 [Vitis vinifera]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/251 (55%), Positives = 179/251 (71%), Gaps = 5/251 (1%)

Query: 4   DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
           + LPE C + ILS TSP DAC+ SLVSS  R AA+SD VWE+FLP DY +IL RL  PLV
Sbjct: 8   NTLPEGCVSTILSLTSPPDACKSSLVSSIFRAAAESDVVWERFLPADYHDILSRLAEPLV 67

Query: 64  YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
             SKKELF+RLC P LID GKK F L+K T K  Y++ ARELSI+W+++P +W+W    +
Sbjct: 68  VSSKKELFLRLCDPSLIDGGKKRFRLDKWTGKNSYMMSARELSISWSHDPTHWSWTSIPE 127

Query: 124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
           SRF+EVAEL+T+  L+I GKI T+ +SP T+Y AYLI+K + RAFGLD +PSE+S+EV N
Sbjct: 128 SRFSEVAELKTVCRLEIHGKIRTQMLSPNTKYGAYLIIKISNRAFGLDLMPSEISVEVSN 187

Query: 184 GSFKSQGTVYLRWQERK-KQLECLGHLYFLHRDEALRSRVSEGDGERFARERE-DGWIEI 241
            +    GT YLR  + K KQ+E    L++ +R E LRSRV EGDG      R+ DGW+E+
Sbjct: 188 STQVCNGTAYLRCIDSKNKQME---RLFYGNRGEMLRSRVIEGDGRVPCERRDGDGWMEL 244

Query: 242 ELGSFYNDGGD 252
           ELG F+N  GD
Sbjct: 245 ELGDFFNGEGD 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089714|emb|CBI39533.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 157/195 (80%), Gaps = 2/195 (1%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           MN +LLP+DC +HILS TSPRDACR  LVS+TVR A DSD+VWEKFLP DY EIL RLV 
Sbjct: 483 MNFELLPQDCISHILSCTSPRDACRSGLVSTTVRHAGDSDSVWEKFLPSDYQEILSRLVS 542

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PLV+ SKKEL+ +LC P+LID+G+K+FS+ K+T +K Y L AR LSITW++N LYW+WKP
Sbjct: 543 PLVFASKKELYSKLCRPLLIDEGRKSFSISKTTGEKGYTLSARNLSITWSSNALYWSWKP 602

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
            LQSRF E  ELRTI WL+I GKI+T  +SPKT Y AYLIVKFA+RA+GLD+LPSEVS+ 
Sbjct: 603 LLQSRFAETVELRTICWLEIQGKISTCMLSPKTTYRAYLIVKFADRAYGLDALPSEVSVV 662

Query: 181 VGNGSFKSQGTVYLR 195
           VG    +SQG  YLR
Sbjct: 663 VGK--HQSQGIAYLR 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542810|ref|XP_002512468.1| conserved hypothetical protein [Ricinus communis] gi|223548429|gb|EEF49920.1| conserved hypothetical protein [Ricinus communis]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/260 (52%), Positives = 179/260 (68%), Gaps = 8/260 (3%)

Query: 1   MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
           M    LPE C + +LS+TSP   C+ SLVS++ + AADSD VWE FLP DY +I+ R + 
Sbjct: 1   MEFTSLPEGCLSTVLSFTSPLHVCKSSLVSTSFQSAADSDIVWESFLPCDYPDIISRSIT 60

Query: 61  PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKP 120
           PL + SKKELF+ LC P+ +D G+K F LEKST +K YIL AR+LSITW+N  +YW W  
Sbjct: 61  PLKFSSKKELFICLCDPIFLDGGRKNFKLEKSTGRKSYILSARDLSITWSNQAMYWNWVS 120

Query: 121 FLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE 180
             +S F EVA LRT+ WL+I GKI T+ +SP TQY AYLI+K ++RA+GLD +P EVS+E
Sbjct: 121 LPESSFFEVAILRTVCWLEIQGKIKTQMLSPNTQYGAYLILKISDRAYGLDLIPCEVSIE 180

Query: 181 VGNGSFKSQGTVYLRWQE--RKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGW 238
           V N    S  T YLR  +  +K+Q+E   HL+F +R   L+SRV EGD  R    REDGW
Sbjct: 181 VDN--LLSSSTAYLRHGQYSKKQQME---HLFFANRTHMLKSRVVEGDA-RVPSGREDGW 234

Query: 239 IEIELGSFYNDGGDGKEVEI 258
           +EIELG F+ +G   +EV++
Sbjct: 235 LEIELGEFFVNGESDEEVKM 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511811|ref|XP_003626194.1| F-box protein PP2-B15 [Medicago truncatula] gi|355501209|gb|AES82412.1| F-box protein PP2-B15 [Medicago truncatula]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 171/257 (66%), Gaps = 25/257 (9%)

Query: 3   VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV-LP 61
           ++LLPEDCFAHILS+TSP D CR+SL+SS V+  ADSD +WEKFLP  Y EI+ RLV  P
Sbjct: 1   MELLPEDCFAHILSFTSPLDVCRVSLLSSVVQSMADSDFLWEKFLPHKYQEIISRLVDPP 60

Query: 62  LVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPF 121
           L   SKKELF RLC P LID G K FS+EK+T K  Y+L AR+LSIT+ N  LYW+WK  
Sbjct: 61  LPCSSKKELFARLCKPSLIDDGNKMFSIEKTTGKICYLLSARQLSITFGNTSLYWSWKQV 120

Query: 122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
             SRF E AELRTI WL+I G IN++ +SPKT Y AYL VK A+RA+GLDSLPSEVS+EV
Sbjct: 121 QGSRFAEAAELRTICWLEIKGSINSEMLSPKTMYGAYLKVKIADRAYGLDSLPSEVSIEV 180

Query: 182 GNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEI 241
           GN  +KSQ  VY+R Q  K+  +   H    H DE                     W+EI
Sbjct: 181 GN--YKSQENVYIRSQS-KRNGKAYCHCNCEHNDE---------------------WLEI 216

Query: 242 ELGSFYNDGGDGKEVEI 258
           +LGSFY +    +EV +
Sbjct: 217 KLGSFYTEKVQVQEVRM 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.950	0.858	0.448	2.1e-54
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.670	0.643	0.441	9.8e-50
TAIR|locus:2011806	284	PP2-B13 "phloem protein 2-B13"	0.961	0.883	0.430	1.8e-48
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.961	0.890	0.422	6e-48
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.693	0.565	0.473	1.2e-47
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.712	0.6	0.421	7.6e-46
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.704	0.547	0.438	5.3e-45
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.869	0.904	0.420	2.2e-41
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.681	0.579	0.422	4.1e-41
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.919	0.786	0.378	9.6e-41

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 113/252 (44%), Positives = 155/252 (61%)

Query:     5 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLP-LV 63
             +LPE C A ILS+T+P D    + VSS  R A DSD VWEKFLP DY  ++ R   P  +
Sbjct:     2 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query:    64 YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
             + SKKEL+  LC  +LID G+K F +EK + K  YIL +R+LSITW++   YW+W P   
Sbjct:    62 FSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSD 121

Query:   124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
             SRF+E  +L    WL+I GKI T  +SP T Y AYLI+K   RA+GLD +P+E S++VGN
Sbjct:   122 SRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGN 181

Query:   184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIEL 243
             G  K + T YL   + KKQ   +  +++  R++ + +        R    R+DGW+EIEL
Sbjct:   182 GEKKIKST-YLSCLDNKKQQ--MERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIEL 238

Query:   244 GSFYNDGGDGKE 255
             G F    G+G +
Sbjct:   239 GEFETGSGEGDD 250

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 79/179 (44%), Positives = 117/179 (65%)

Query:     4 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
             D  PEDC ++I+S+T+PRDAC  + VS T      SD +WEKFLP DY  ++P      V
Sbjct:    15 DSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPP---SRV 71

Query:    64 YFSKKELFMRLCS-PVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
             + SKKEL+  LC+ PVL D  KK+  LEK++ K+  +L A  LSI W +NP YW W P  
Sbjct:    72 FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query:   123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
             +SRF +VA+LR + W +I G+ NT+ +SP+T+Y+AY++ K  ++ +G  ++  E ++ V
Sbjct:   132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGV 190

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011806 PP2-B13 "phloem protein 2-B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 111/258 (43%), Positives = 158/258 (61%)

Query:     5 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV-LPLV 63
             +LPE C A+IL++TSP DA   S VSS  R A DSD VWEKFLP  Y  ++ +      +
Sbjct:     3 MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRI 62

Query:    64 YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
             + SKKE++  LC  +LID  +K F + K + K  YIL AR++SIT++++  Y +W     
Sbjct:    63 FSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122

Query:   124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
             SRF+E AEL T   L+I GKI T  +SP T+Y AYLI+K    A+GLD +P+E S++  N
Sbjct:   123 SRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKN 182

Query:   184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSE--GDGERFA-REREDGWIE 240
             G   ++ T YL   + KKQ   +  L++ +R+E +   V    GDG+R   + R+DGW+E
Sbjct:   183 GQ-NNKNTTYLCCLDEKKQQ--MKRLFYGNREERMAMTVEAVGGDGKRREPKARDDGWLE 239

Query:   241 IELGSFYNDGGDGKEVEI 258
             IELG F    G+  EV +
Sbjct:   240 IELGEFVTREGEDDEVNM 257

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 109/258 (42%), Positives = 155/258 (60%)

Query:     5 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLV-LPLV 63
             +LPE C A+IL++TSP DA   S VSS  R A DSD VWEKFLP DY  ++ +       
Sbjct:     3 MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query:    64 YFSKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFLQ 123
               SKKE++  LC  +LID  +K F + K + K  Y+L AR++SIT +++  YW+W     
Sbjct:    63 ISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122

Query:   124 SRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVGN 183
             SRF+E AEL     L+I GKI T+ +S  T+Y AYLIVK  + A+GLD +P+E S++  N
Sbjct:   123 SRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKN 182

Query:   184 GSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSE--GDGERFARE-REDGWIE 240
             G      T      E+K+Q++    L++ +R+E +   V    GDG+R   + R+DGW+E
Sbjct:   183 GQISKSATYLCCLDEKKQQMK---RLFYGNREERMAMTVEAVGGDGKRREPKCRDDGWME 239

Query:   241 IELGSFYNDGGDGKEVEI 258
             IELG F    G+  EV +
Sbjct:   240 IELGEFETREGEDDEVNM 257

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 88/186 (47%), Positives = 124/186 (66%)

Query:     4 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
             D+LPEDC ++I+S+TSPRDAC  + VS T   A  SD VW+KFLP +Y  ++ R     V
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRV 118

Query:    64 YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
             + SKKEL+  LC +PVLI+ GKK+F LEK++ K+  +L ++EL ITW ++P YW W    
Sbjct:   119 FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIP 178

Query:   123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLE-V 181
             +SRF ++AEL  + W +I GK + + +SP T+Y+AY++ K  +R  GL  LP EV L  V
Sbjct:   179 ESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLV 238

Query:   182 GNGSFK 187
             G  S K
Sbjct:   239 GQESSK 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 81/192 (42%), Positives = 120/192 (62%)

Query:     4 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
             D LPEDC ++I+S+TSPRDAC  + VS T   A +SD+VW+KFLP DY  ++P      V
Sbjct:    48 DNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPP---SRV 104

Query:    64 YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARE-LSITWANNPLYWTWKPF 121
             + SKKEL+  +C +PVL++ G K+F LEK   KK ++L  ++ + ITW + P YW W   
Sbjct:   105 FSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISI 164

Query:   122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
              ++RF EV EL  + W ++ G +NTK +SP T+Y+AY++ K       L  +P E ++ +
Sbjct:   165 PEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGL 224

Query:   182 GNGSFKSQGTVY 193
               G   SQ  +Y
Sbjct:   225 V-GQESSQRHIY 235

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 85/194 (43%), Positives = 125/194 (64%)

Query:     4 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
             D LPEDC + ++S+TSPRDAC ++ VS +V+ AA SD VWE FLP +Y      LVL   
Sbjct:    33 DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSS----LVLQSA 88

Query:    64 -YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPF 121
              + SKKE+F+ L  + VL++ GKK+F +EK++ KK Y+L A EL+I W ++P YW W   
Sbjct:    89 NHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITV 148

Query:   122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAE-RAFGLDSLPSEVSLE 180
              +S+F +VAELR + W ++ GKI+   +S  T Y+ Y++ K A  R++G D +P E    
Sbjct:   149 PESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG-- 206

Query:   181 VGN-GSFKSQGTVY 193
             VG  G   ++ +VY
Sbjct:   207 VGFVGKVATKKSVY 220

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 103/245 (42%), Positives = 140/245 (57%)

Query:     1 MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
             MN   LPE+C A ++S+TSP DACR+S VS  +R AADS+  WE+FLP DY   +     
Sbjct:     1 MNFLDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDN--- 57

Query:    61 PLVYFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWK 119
              L  FS K+LF+R C SP+LI+ G+ +F +EK + KK ++L AR+L I W ++P +W W 
Sbjct:    58 SLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWV 117

Query:   120 PFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAER-AFGLDSLPSEVS 178
                 SRF EVA L  + W +I GKI+T  +S  T Y+AYL+ K  E  +FG +SLP EVS
Sbjct:   118 SIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVS 177

Query:   179 LEVGNGSFKSQGTVYLR--WQERKKQ--LEC-LGHLYFLHRDEALRSRVSEGDGERFARE 233
                      +   V+L+   QE ++   LE  LG  Y    DE +   V E         
Sbjct:   178 FRSTRTEVYNNRRVFLKSGTQESREDGWLEIELGEYYVGFDDEEIEMSVLE--------T 229

Query:   234 REDGW 238
             RE GW
Sbjct:   230 REGGW 234

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 79/187 (42%), Positives = 113/187 (60%)

Query:     4 DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLV 63
             D LPEDC ++I+S+TSPRD C  + VS +   A   D++WEKFLP +Y  ++P      V
Sbjct:    46 DDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPW---RV 102

Query:    64 YFSKKELFMRLC-SPVLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPFL 122
             + SKK+L+  LC  PVL++ GKK+F LE ++ KK  +L A+EL IT  NNP YW W    
Sbjct:   103 FSSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELC 162

Query:   123 QSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEVG 182
             +S F +V EL      Q+ G ++T+ +S  T Y+ Y++ K  +   GL  LP    ++VG
Sbjct:   163 ESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLP----IQVG 218

Query:   183 NGSFKSQ 189
              G FK Q
Sbjct:   219 VG-FKGQ 224

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 98/259 (37%), Positives = 151/259 (58%)

Query:     3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL 62
             +D LPE+C + I+S+TSP+DAC L+ VS T   A  SD VWEKF+P +Y  ++ +     
Sbjct:    36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQS-RAF 94

Query:    63 VYFSKKELFMRLCSP-VLIDQGKKTFSLEKSTSKKRYILGARELSITWANNPLYWTWKPF 121
              + SKKEL+  LC   VLID GKK+  +EK+ +K+  ++ A  L+I W N+P  W W P 
Sbjct:    95 KFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query:   122 LQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSLPSEVSLEV 181
              Q+RF  VAEL  +   +I G+IN++ ISPKT+Y+AY++ K     +G +++  EV + V
Sbjct:   155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query:   182 GNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEI 241
                  +     Y+ + E   +        F  RD   ++ V     ER    R+DGW+EI
Sbjct:   215 VGQDLEESCRRYICFDETMDE-------QFRRRDRG-KNLVKP---ER----RKDGWMEI 259

Query:   242 ELGSFYNDGG--DGKEVEI 258
             ++G F+N+GG  +  E+E+
Sbjct:   260 KIGEFFNEGGLLNDDEIEM 278

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80494	P2B15_ARATH	No assigned EC number	0.4404	0.9501	0.8581	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022691001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (258 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam14299	154	pfam14299, PP2, Phloem protein 2	1e-54
pfam00646	48	pfam00646, F-box, F-box domain	2e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	7e-05

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  172 bits (439), Expect = 1e-54
 Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 35/164 (21%)

Query: 95  KKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQ 154
           KK Y+L AR LSITW ++P YW W P  +SRF+EVAEL  + WL+I GKINT+ +SP T 
Sbjct: 2   KKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGTT 61

Query: 155 YAAYLIVKFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHR 214
           Y+AYL+ K A+RA+G D  P E S+ V +G            + R+++  CL        
Sbjct: 62  YSAYLVFKLADRAYGWDEKPVEFSVSVPDG-----------QKSRQERYVCLPE------ 104

Query: 215 DEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDGKEVEI 258
                             +R DGW+EIE+G F+N+GG+  EVE 
Sbjct: 105 ------------------KRGDGWMEIEVGEFFNEGGEDGEVEF 130

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 1  MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFL 47
           ++  LP+D    ILS   P+D  RLSLVS   R   DS  +W+K L
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 3  VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46
          +  LP++    I SY  PRD  RL+LV    R  A  D++W + 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 6  LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46
          LP++    ILS   P+D  RL  VS   R   DS + W K 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.77
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.4
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.33
PF06881	109	Elongin_A: RNA polymerase II transcription factor	93.71
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.59
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	87.92
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	87.72
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.49

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1e-53  Score=361.41  Aligned_cols=132  Identities=50%  Similarity=0.936  Sum_probs=119.1

Q ss_pred             CceeEEeeccceeeeecCCCCCeEEeecCccccccceEEeeeeEEEEEEEEeccccCCCCceEEEEEEEeccccCCCCcc
Q 045590           94 SKKRYILGARELSITWANNPLYWTWKPFLQSRFTEVAELRTISWLQITGKINTKTISPKTQYAAYLIVKFAERAFGLDSL  173 (261)
Q Consensus        94 G~kCymlsAR~L~ItWgd~~~yW~W~~~~~SrF~evAeL~~VcWLeI~G~i~~~~LSp~t~Y~aylv~kl~d~~~G~d~~  173 (261)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEECCccceeeeeEEeccchhhhhhhhhcccccccchhhhhccccCCCccccceecCCceEEEEeeeEEecCCCc
Q 045590          174 PSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSRVSEGDGERFAREREDGWIEIELGSFYNDGGDG  253 (261)
Q Consensus       174 pv~~~v~~g~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DGWmEiElGeF~n~~g~d  253 (261)
                      ||+++|++++... .....                                  ...+|++|+|||||||||||||++++|
T Consensus        81 pv~~~v~~~~~~~-~~~~~----------------------------------~~~~~~~r~dgW~Eie~GeF~~~~~~~  125 (154)
T PF14299_consen   81 PVEFSVKVPDGEK-YEQER----------------------------------KVCLPKERGDGWMEIELGEFFNEGGDD  125 (154)
T ss_pred             CEEEEEEeCCCcc-cccee----------------------------------eEEcCCCCCCCEEEEEcceEEecCCCC
Confidence            9999999944331 11100                                  122588899999999999999999999


Q ss_pred             eeEEEec
Q 045590          254 KEVEIPK  260 (261)
Q Consensus       254 ~EV~~s~  260 (261)
                      +||+|++
T Consensus       126 ~ev~f~~  132 (154)
T PF14299_consen  126 GEVEFSM  132 (154)
T ss_pred             cEEEEEE
Confidence            9999986

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.77  E-value=6.3e-09  Score=70.65  Aligned_cols=45  Identities=36%  Similarity=0.682  Sum_probs=40.4

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCC
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFL   47 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fL   47 (261)
                      |.+||+|.+..|+++++|.|.+++++|||.|+.++.++.+|.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            578999999999999999999999999999999999999998753

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.40  E-value=5.5e-08  Score=65.71  Aligned_cols=46  Identities=41%  Similarity=0.675  Sum_probs=39.4

Q ss_pred             CCCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590            1 MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF   46 (261)
Q Consensus         1 ~~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f   46 (261)
                      +.+.+||++++..|++++++.|.++++.||+.|+.+.+++..|..+
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            3467899999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.33  E-value=5.2e-07  Score=58.32  Aligned_cols=40  Identities=40%  Similarity=0.582  Sum_probs=38.6

Q ss_pred             CcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhcc
Q 045590            6 LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEK   45 (261)
Q Consensus         6 LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~   45 (261)
                      ||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=93.71  E-value=0.048  Score=43.51  Aligned_cols=71  Identities=27%  Similarity=0.360  Sum_probs=57.4

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc
Q 045590            2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC   75 (261)
Q Consensus         2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~   75 (261)
                      .++++|-++|.-||...+|....++-.-|+-+.  -++|.+|.+|+=.||..-.... .+....|-+++|..+.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~-~~~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQ-KPKEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhcc-cccccchHHHHHHHHH
Confidence            578999999999999999999999999886554  4699999999999997522211 2334468999999986

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.59  E-value=0.045  Score=52.01  Aligned_cols=78  Identities=23%  Similarity=0.373  Sum_probs=55.7

Q ss_pred             CCCCcHHHHHHHHhcC-----ChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCC----CCCCHHHHHHH
Q 045590            3 VDLLPEDCFAHILSYT-----SPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPL----VYFSKKELFMR   73 (261)
Q Consensus         3 ~~~LPe~cia~ils~t-----sP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~----~~~SkKely~~   73 (261)
                      |..||++.+-.|+...     +-++.-++|+||+.|+-+|..|.+|..++=.-|+.-+-...+-.    -..|-+++|+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            5689999998888654     45999999999999999999999999999876664332222111    12456666543


Q ss_pred             hcCC-ceecC
Q 045590           74 LCSP-VLIDQ   82 (261)
Q Consensus        74 L~~p-~lld~   82 (261)
                        +| |.+||
T Consensus       187 --RpRvrFdG  194 (366)
T KOG2997|consen  187 --RPRVRFDG  194 (366)
T ss_pred             --Ccceeecc
Confidence              34 55554

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=87.92  E-value=0.15  Score=48.75  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             CCCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccc
Q 045590            1 MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYM   52 (261)
Q Consensus         1 ~~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~   52 (261)
                      +++..||.+.+..++++..++++.+.|+||+.....+.-+..|++++-.++.
T Consensus         6 ~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~   57 (386)
T KOG4408|consen    6 LGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL   57 (386)
T ss_pred             cchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence            4577899999999999999999999999999999999999999999966554

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=87.72  E-value=0.43  Score=46.24  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=34.1

Q ss_pred             CCCCcHHHHHHHHhcC-ChhhhHHhhhccHHHHhhccC
Q 045590            3 VDLLPEDCFAHILSYT-SPRDACRLSLVSSTVRFAADS   39 (261)
Q Consensus         3 ~~~LPe~cia~ils~t-sP~Dacr~a~Vs~~fr~aa~s   39 (261)
                      -.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            3589999999999987 899999999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.49  E-value=0.4  Score=48.47  Aligned_cols=50  Identities=28%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccc
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYM   52 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~   52 (261)
                      |..||-+..-.||+++++++.|.+++||+-|+..++.|.+|.+.+.....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            56799999999999999999999999999999999999999977766443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-07
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	8e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 2   NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYM-------EI 54
            +  LP D   +ILS+ SP D C+L   +           +W  FL  D         + 
Sbjct: 4   TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKS 63

Query: 55  LPRLVLPL---------VYFSKKELFMRLCSPVLIDQGKKTFS 88
           LP L +            +F    ++   C P LI Q +  F+
Sbjct: 64  LPDLEILKKPISEVTDGAFFDYMAVYRM-CCPYLIIQNEPRFA 105

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 1  MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF 46
          ++ D LP++    I S     +  ++S V       A  +++W+  
Sbjct: 7  VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 1  MNVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVL 60
          ++ D LP++    I S     +  ++S V       A  +++W+         + P +  
Sbjct: 7  VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLHPDVTG 65

Query: 61 PLVYFSKKELFMRLCSPVLIDQGKKTFSLEKSTS 94
           L+  S+  +  R     +     + FS  +   
Sbjct: 66 RLL--SQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.84
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.53
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.62
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.39
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	84.77

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.84  E-value=2.8e-09  Score=72.93  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccC
Q 045590            2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKF   46 (261)
Q Consensus         2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~f   46 (261)
                      .+.+||++++..|+++++|.|.+++++|||.|+.++.++.+|.++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            478999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.53  E-value=2.5e-08  Score=91.99  Aligned_cols=73  Identities=25%  Similarity=0.390  Sum_probs=60.1

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCccc---ccccccccCCC-------------CCCC
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDY---MEILPRLVLPL-------------VYFS   66 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy---~~il~~~~~~~-------------~~~S   66 (261)
                      |++||.+++.+|+||++|.|+||+|+||+.+|.+|+.+.+|..||-.|+   .+|-..+.+..             .+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~   84 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD   84 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence            6789999999999999999999999999999999999999999998764   44444333211             1456


Q ss_pred             HHHHHHHhc
Q 045590           67 KKELFMRLC   75 (261)
Q Consensus        67 kKely~~L~   75 (261)
                      ++.+|.+=|
T Consensus        85 ~~~~y~~~~   93 (312)
T 3l2o_B           85 YMAVYRMCC   93 (312)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            789999887

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.17  E-value=9.9e-07  Score=81.02  Aligned_cols=79  Identities=13%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhH-HhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc-CCce
Q 045590            2 NVDLLPEDCFAHILSYTSPRDAC-RLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC-SPVL   79 (261)
Q Consensus         2 ~~~~LPe~cia~ils~tsP~Dac-r~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~-~p~l   79 (261)
                      .+..||++.+..||+++.|++.+ |+++|||.||.+++++.+|.++|...  .+......+.+..+-|.+|+.-- .-+|
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~~~~~Wk~~y~~~~~gRNL  127 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADEERDHWQQFYFLSKRRRNL  127 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----CCSCHHHHHHHHHHCCCC
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCCCCCChhhhheheecccce
Confidence            57899999999999999999999 99999999999999999999998765  22221111123456899998754 3456


Q ss_pred             ecC
Q 045590           80 IDQ   82 (261)
Q Consensus        80 ld~   82 (261)
                      |.+
T Consensus       128 L~N  130 (297)
T 2e31_A          128 LRN  130 (297)
T ss_dssp             SSC
T ss_pred             eec
Confidence            654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.89  E-value=4.7e-06  Score=76.08  Aligned_cols=46  Identities=22%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCC
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLP   48 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP   48 (261)
                      |..||++++..|+++++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            6789999999999999999999999999999999999999998763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.62  E-value=1.1e-05  Score=73.48  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccC-chhhccCC
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADS-DNVWEKFL   47 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~s-D~vW~~fL   47 (261)
                      |..||++++..|+++++|.|.|++++||+.|+.++++ +.+|.+++
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4569999999999999999999999999999999987 89999887

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.54  E-value=1e-05  Score=73.89  Aligned_cols=48  Identities=23%  Similarity=0.415  Sum_probs=44.1

Q ss_pred             CCCCcHH----HHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcc
Q 045590            3 VDLLPED----CFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVD   50 (261)
Q Consensus         3 ~~~LPe~----cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~d   50 (261)
                      |..||++    ++..|+++++|.|.|++++||+.|+.+++++.+|.+++-..
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            3569999    99999999999999999999999999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.95  E-value=0.00052  Score=60.55  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=40.4

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhcc
Q 045590            2 NVDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEK   45 (261)
Q Consensus         2 ~~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~   45 (261)
                      .+++||++++..|+++++++|.++++.||+.|+.++.+...|.+
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            47899999999999999999999999999999999877777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.11  E-value=0.012  Score=55.62  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             CCCCcHHHHHHHHhcCC-hhhhHHhhhccHHHHhh
Q 045590            3 VDLLPEDCFAHILSYTS-PRDACRLSLVSSTVRFA   36 (261)
Q Consensus         3 ~~~LPe~cia~ils~ts-P~Dacr~a~Vs~~fr~a   36 (261)
                      +++||++++..|+++++ ++|++++|.||+.|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            67899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.39  E-value=0.047  Score=51.63  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCCcHHHHHHHHhcC-ChhhhHHhhhccHHHHhh
Q 045590            4 DLLPEDCFAHILSYT-SPRDACRLSLVSSTVRFA   36 (261)
Q Consensus         4 ~~LPe~cia~ils~t-sP~Dacr~a~Vs~~fr~a   36 (261)
                      .+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            379999999999999 899999999999999987

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=84.77  E-value=0.46  Score=36.61  Aligned_cols=64  Identities=22%  Similarity=0.410  Sum_probs=40.0

Q ss_pred             CCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcccccccccccCCCCCCCHHHHHHHhc
Q 045590            5 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYFSKKELFMRLC   75 (261)
Q Consensus         5 ~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il~~~~~~~~~~SkKely~~L~   75 (261)
                      ..|-+.+.-||-..||....++-.-|+.+  +-++|-+|.+|+=.||..--     +....|-+++|.+|.
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~e~esWRelY~rl~   75 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PEEYESWREMYLRLQ   75 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CCSSSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CCCCCCHHHHHHHHH
Confidence            35888899999999999999999999965  56899999999999998432     344579999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 4  DLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVW 43
          D LP++    I S     +  ++S V       A  +++W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 3  VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEK------FLPVDYMEILP 56
          + LLP++   ++LS+  P+D  + +      R  A+ + +W +           +++   
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78

Query: 57 RLVLPLVYFSKKELFMR 73
           +    ++   K  ++R
Sbjct: 79 VIKPGFIHSPWKSAYIR 95

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 3  VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDN-VWEKFL 47
          +  LP +    I +Y    D      VS            +W+K L
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 51

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 6   LPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVYF 65
             +    +ILSY   +  C   LV            +W+K        ++    L     
Sbjct: 18  GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL----IERMVRTDSLWRGLA 73

Query: 66  SKKELFMRLCSPVLIDQGKKTFSLEKSTSKKRY 98
            ++     L      D      S  ++   K  
Sbjct: 74  ERRGWGQYLFKNKPPDGNAPPNSFYRALYPKII 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.96
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.28
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.16

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.4e-10  Score=85.83  Aligned_cols=72  Identities=17%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCccccccc------ccccCCCCCCCHHHHHHHh
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEIL------PRLVLPLVYFSKKELFMRL   74 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~il------~~~~~~~~~~SkKely~~L   74 (261)
                      |..||+|++..|+++++|.|+|++|+||+.|+.++.+|.+|++.+-.++...-      ....+.....+-|++|.+.
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            67899999999999999999999999999999999999999877654432111      0111122334579999875

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.2e-10  Score=73.20  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=39.7

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhh
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVW   43 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW   43 (261)
                      ++.||++++..|+++++|.|.||+++|||.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            47899999999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=9.2e-08  Score=71.62  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHhhhccHHHHhhccC-chhhccC
Q 045590            3 VDLLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADS-DNVWEKF   46 (261)
Q Consensus         3 ~~~LPe~cia~ils~tsP~Dacr~a~Vs~~fr~aa~s-D~vW~~f   46 (261)
                      |.+||++++..|+++++|.|.|++|+||+.|+.++++ ..+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4579999999999999999999999999999987755 5799875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1e-07  Score=73.18  Aligned_cols=47  Identities=23%  Similarity=0.426  Sum_probs=42.3

Q ss_pred             CCCc----HHHHHHHHhcCChhhhHHhhhccHHHHhhccCchhhccCCCcc
Q 045590            4 DLLP----EDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVD   50 (261)
Q Consensus         4 ~~LP----e~cia~ils~tsP~Dacr~a~Vs~~fr~aa~sD~vW~~fLP~d   50 (261)
                      ..||    ++.+..|+|+++|.|.|++|+||+.|+..++++.+|.+++-..
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            3466    4999999999999999999999999999999999999977544