Citrus Sinensis ID: 045656
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 802 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y169 | 717 | Exostosin-2 OS=Drosophila | yes | no | 0.289 | 0.323 | 0.333 | 1e-30 | |
| Q9XZ08 | 972 | Exostosin-3 OS=Drosophila | no | no | 0.288 | 0.237 | 0.332 | 3e-24 | |
| P70428 | 718 | Exostosin-2 OS=Mus muscul | yes | no | 0.290 | 0.324 | 0.322 | 5e-24 | |
| O77783 | 718 | Exostosin-2 OS=Bos taurus | yes | no | 0.290 | 0.324 | 0.322 | 5e-24 | |
| Q93063 | 718 | Exostosin-2 OS=Homo sapie | yes | no | 0.290 | 0.324 | 0.322 | 6e-24 | |
| Q9ES89 | 330 | Exostosin-like 2 OS=Mus m | no | no | 0.288 | 0.7 | 0.279 | 4e-22 | |
| Q9WVL6 | 918 | Exostosin-like 3 OS=Mus m | no | no | 0.269 | 0.235 | 0.325 | 4e-22 | |
| O43909 | 919 | Exostosin-like 3 OS=Homo | no | no | 0.269 | 0.235 | 0.325 | 5e-22 | |
| Q9UBQ6 | 330 | Exostosin-like 2 OS=Homo | no | no | 0.295 | 0.718 | 0.287 | 3e-21 | |
| O01705 | 814 | Exostosin-2 OS=Caenorhabd | yes | no | 0.295 | 0.291 | 0.312 | 4e-21 |
| >sp|Q9Y169|EXT2_DROME Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 138/249 (55%), Gaps = 17/249 (6%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWN--KGEPPKLSDLDS-AVPVRIRVE 612
FT + +T+D R+ +L + ++ + S++ I+V+WN K PP LS S + P++IR
Sbjct: 455 FTAVILTYD-RVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLSTFPSISKPLKIRQT 513
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
K+N L+NRF P I+T +L +DDDI M+T D+++ G++VWR+ PD IVGF R+
Sbjct: 514 KENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDFGYEVWREFPDHIVGFPSRIHVWE 573
Query: 672 PLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSE---QAKAG--REFVDKFFNCED 726
+ R + +M+LTGAAF ++YWS A G +++VD+ NCED
Sbjct: 574 NVTMRWHYESEWTNQISMVLTGAAF------HHKYWSHMYTHAMPGDIKDWVDEHMNCED 627
Query: 727 VLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSF 786
+ +N+L AN + + ++ V P + + + H +RS C+ +F+++YG
Sbjct: 628 IAMNFLVANITNNPPIK-VTPRKKFKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRM 686
Query: 787 AGRKWEFGG 795
R EF
Sbjct: 687 PLRTVEFRA 695
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate and responsible for the alternating addition of beta-1-4-linked glucuronic acid (GlcA) and alpha-1-4-linked N-acetylglucosamine (GlcNAc) units to nascent heparan sulfate chains. Plays a central role in diffusion of morphogens hedgehog (hh), wingless (wg) and Decapentaplegic (dpp) via its role in heparan sulfate proteoglycans (HSPGs) biosynthesis, HSPGs being required for movement of Hh, Dpp and wg morphogens. Drosophila melanogaster (taxid: 7227) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 2EC: 5 |
| >sp|Q9XZ08|EXT3_DROME Exostosin-3 OS=Drosophila melanogaster GN=botv PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 31/262 (11%)
Query: 539 GGNGADEAYMWKGHY--SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPP 596
GG G + G+Y QFT++ +T++ + + Y + ++VVVWN +PP
Sbjct: 695 GGAGKEFGESLGGNYPREQFTIVMLTYEREQVLMDSLGRLYG-LPYLHKVVVVWNSPKPP 753
Query: 597 KLSDL---DSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653
L DL D VPV + +NSLNNRF +I+T VL +DDD + D+I GF+VW
Sbjct: 754 -LDDLRWPDIGVPVAVLRAPRNSLNNRFLPFDVIETEAVLSVDDDAHLRHDEILFGFRVW 812
Query: 654 RQHPDRIVGFYPRLVNGSPLRYR----GEKYARRHKGYN------MILTGAAFVDSQIAF 703
R+H DR+VGF P RY G + H N M+LTGAAFV +
Sbjct: 813 REHRDRVVGF--------PGRYHAWDLGNPNGQWHYNSNYSCELSMVLTGAAFV-HKYYL 863
Query: 704 NRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAIS- 762
Y +A R+ VD++ NCED+ +N+L ++ + V+ V W T + G +S
Sbjct: 864 YLYTYHLPQAIRDKVDEYMNCEDIAMNFLVSHITRKPPVK-VTSRW---TFRCPGCPVSL 919
Query: 763 RNTQVHYHKRSECLRKFAEMYG 784
H+ +R +C+ F+ ++G
Sbjct: 920 SEDDTHFQERHKCINFFSRVFG 941
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate and responsible for the alternating addition of beta-1-4-linked glucuronic acid (GlcA) and alpha-1-4-linked N-acetylglucosamine (GlcNAc) units to nascent heparan sulfate chains. Plays a central role in diffusion of morphogens hedgehog (hh), wingless (wg) and Decapentaplegic (dpp) via its role in heparan sulfate proteoglycans (HSPGs) biosynthesis, HSPGs being required for movement of Hh, Dpp and wg morphogens. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 3 |
| >sp|P70428|EXT2_MOUSE Exostosin-2 OS=Mus musculus GN=Ext2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 9/242 (3%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK--GEPPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEESLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG+ RL
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVGYPGRLHLWD 574
Query: 672 PLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLLN 730
+ + + +M+LTGAAF FN ++ + + +VD NCED+ +N
Sbjct: 575 HEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDTHMNCEDIAMN 632
Query: 731 YLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRK 790
+L AN + K V V P + + + Q H +RSEC+ KFA ++G+ +
Sbjct: 633 FLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGTMPLKV 691
Query: 791 WE 792
E
Sbjct: 692 VE 693
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate. The EXT1/EXT2 complex possesses substantially higher glycosyltransferase activity than EXT1 or EXT2 alone. Appears to be a tumor suppressor. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 5 |
| >sp|O77783|EXT2_BOVIN Exostosin-2 OS=Bos taurus GN=EXT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 9/242 (3%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK--GEPPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG+ RL
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVGYPGRLHLWD 574
Query: 672 PLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLLN 730
+ + + +M+LTGAAF FN ++ + + +VD NCED+ +N
Sbjct: 575 HEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAMN 632
Query: 731 YLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRK 790
+L AN + K V V P + + + Q H +RSEC+ KFA ++G+ +
Sbjct: 633 FLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGTMPLKV 691
Query: 791 WE 792
E
Sbjct: 692 VE 693
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate and responsible for the alternating addition of beta-1-4-linked glucuronic acid (GlcA) and alpha-1-4-linked N-acetylglucosamine (GlcNAc) units to nascent heparan sulfate chains. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 5 |
| >sp|Q93063|EXT2_HUMAN Exostosin-2 OS=Homo sapiens GN=EXT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 9/242 (3%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK--GEPPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG+ RL
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVGYPGRLHLWD 574
Query: 672 PLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLLN 730
+ + + +M+LTGAAF FN ++ + + +VD NCED+ +N
Sbjct: 575 HEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAMN 632
Query: 731 YLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRK 790
+L AN + K V V P + + + Q H +RSEC+ KFA ++G+ +
Sbjct: 633 FLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGTMPLKV 691
Query: 791 WE 792
E
Sbjct: 692 VE 693
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate. The EXT1/EXT2 complex possesses substantially higher glycosyltransferase activity than EXT1 or EXT2 alone. Appears to be a tumor suppressor. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 5 |
| >sp|Q9ES89|EXTL2_MOUSE Exostosin-like 2 OS=Mus musculus GN=Extl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 550 KGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK-GE--PPKL--SDLDSA 604
K FT++ T++ L++ + HY S+ +++VVWN GE P +L S
Sbjct: 61 KSALDSFTLIMQTYNRTDLLLRL-LNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHP 119
Query: 605 VPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664
+PV + + N + NR ++ P ++T VL +DDD +++ D+ F +W+Q PD+I+GF
Sbjct: 120 IPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 179
Query: 665 PRL-VNGSPLRYRGEKYARRHKG------YNMILTGAAFVDSQIAFNRYWSEQAKAGREF 717
PR V+ S Y + + G Y+M+L GA+F +S+ + + +Q A
Sbjct: 180 PRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSK--YLELFQKQPAAVHAL 237
Query: 718 VDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFS-GVAISRNTQVHYHKRSECL 776
+D+ NC+D+ +N+L + + +V+P ++ K + G + + H+ +RS C+
Sbjct: 238 IDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWHRAEHFLQRSYCI 297
Query: 777 RKFAEMY 783
K +Y
Sbjct: 298 NKLVNIY 304
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate and responsible for the alternating addition of beta-1-4-linked glucuronic acid (GlcA) and alpha-1-4-linked N-acetylglucosamine (GlcNAc) units to nascent heparan sulfate chains. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 3 |
| >sp|Q9WVL6|EXTL3_MOUSE Exostosin-like 3 OS=Mus musculus GN=Extl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 27/243 (11%)
Query: 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDL--DSAVPVRIRV 611
QFT++ +T++ R L ++ + + ++VVVWN + P L D VP+ +
Sbjct: 660 EQFTVVMLTYE-REEVLMNSLERLNGLPYLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVR 718
Query: 612 EKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
++NSLNNRF I+T +L +DDD + D+I GF+VWR+ DRIVGF
Sbjct: 719 TEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVGF-------- 770
Query: 672 PLRYRGEKYARRHKGYN--------MILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFN 723
P RY + YN M+LTGAAF A+ Y +A R+ VD++ N
Sbjct: 771 PGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAY-LYSYVMPQAIRDMVDEYIN 829
Query: 724 CEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGV--AISRNTQVHYHKRSECLRKFAE 781
CED+ +N+L ++ + ++ V W T + G A+S + H+H+R +C+ F +
Sbjct: 830 CEDIAMNFLVSHITRKPPIK-VTSRW---TFRCPGCPQALSHDDS-HFHERHKCINFFVK 884
Query: 782 MYG 784
+YG
Sbjct: 885 VYG 887
|
Probable glycosyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 3 |
| >sp|O43909|EXTL3_HUMAN Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 27/243 (11%)
Query: 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDL--DSAVPVRIRV 611
QFT++ +T++ R L ++ + + ++VVVWN + P L D VP+ +
Sbjct: 661 EQFTVVMLTYE-REEVLMNSLERLNGLPYLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVR 719
Query: 612 EKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
++NSLNNRF I+T +L +DDD + D+I GF+VWR+ DRIVGF
Sbjct: 720 TEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVGF-------- 771
Query: 672 PLRYRGEKYARRHKGYN--------MILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFN 723
P RY + YN M+LTGAAF A+ Y +A R+ VD++ N
Sbjct: 772 PGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAY-LYSYVMPQAIRDMVDEYIN 830
Query: 724 CEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGV--AISRNTQVHYHKRSECLRKFAE 781
CED+ +N+L ++ + ++ V W T + G A+S + H+H+R +C+ F +
Sbjct: 831 CEDIAMNFLVSHITRKPPIK-VTSRW---TFRCPGCPQALSHDDS-HFHERHKCINFFVK 885
Query: 782 MYG 784
+YG
Sbjct: 886 VYG 888
|
Probable glycosyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 3 |
| >sp|Q9UBQ6|EXTL2_HUMAN Exostosin-like 2 OS=Homo sapiens GN=EXTL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 17/254 (6%)
Query: 550 KGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK-GE--PPKL--SDLDSA 604
K FT++ T++ LK+ + HY ++ +++VVWN GE P +L S
Sbjct: 60 KSTMDSFTLIMQTYNRTDLLLKL-LNHYQAVPNLHKVIVVWNNIGEKAPDELWNSLGPHP 118
Query: 605 VPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664
+PV + + N + NR ++ P ++T VL +DDD +++ D+ F VW+Q PD+IVGF
Sbjct: 119 IPVIFKQQTANRMRNRLQVFPELETNAVLMVDDDTLISTPDLVFAFSVWQQFPDQIVGFV 178
Query: 665 PRL-VNGSPLRYRGEKYARRHKG------YNMILTGAAFVDSQIAFNRYWSEQAKAGREF 717
PR V+ S Y + + G Y+M+L GA+F +S+ + + Q A
Sbjct: 179 PRKHVSTSSGIYSYGSFEMQAPGSGNGDQYSMVLIGASFFNSK--YLELFQRQPAAVHAL 236
Query: 718 VDKFFNCEDVLLNYLYANASASKTVEYVRPAWA--IDTSKFSGVAISRNTQVHYHKRSEC 775
+D NC+D+ +N++ A + +V+P ++ SG + + H +RS C
Sbjct: 237 IDDTQNCDDIAMNFIIAKHIGKTSGIFVKPVNMDNLEKETNSGYSGMWHRAEHALQRSYC 296
Query: 776 LRKFAEMYGSFAGR 789
+ K +Y S R
Sbjct: 297 INKLVNIYDSMPLR 310
|
Glycosyltransferase required for the biosynthesis of heparan-sulfate and responsible for the alternating addition of beta-1-4-linked glucuronic acid (GlcA) and alpha-1-4-linked N-acetylglucosamine (GlcNAc) units to nascent heparan sulfate chains. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 3 |
| >sp|O01705|EXT2_CAEEL Exostosin-2 OS=Caenorhabditis elegans GN=rib-2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 32/269 (11%)
Query: 530 TCTGVKFIYGGNGADEAYMWKG--HYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIV 587
T G + I G+GA+ + G QFT++ +T++ R L ++ + + +I+
Sbjct: 533 TKIGFRPIEPGSGAEFSKALGGNRQREQFTVVLLTYE-RDAVLTGALERLHQLPYLNKII 591
Query: 588 VVWNK--GEPPKLSDLDS----AVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMM 641
VVWN +PP D+ +PV +N+LNNRF I+T VL LDDDI +
Sbjct: 592 VVWNNVNRDPP-----DTWPSLHIPVEFIRVAENNLNNRFVPWDRIETEAVLSLDDDIDL 646
Query: 642 TCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEK-----YARRHK-GYNMILTGAA 695
+I F+VWR++ DRIVGF P R+ Y H +MILTGAA
Sbjct: 647 MQQEIILAFRVWRENRDRIVGF--------PARHHARYGDSMFYNSNHTCQMSMILTGAA 698
Query: 696 FVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSK 755
F+ Y E RE V+ NCED+ +NYL ++ + ++ W +
Sbjct: 699 FIHKN-YLTAYTYEMPAEIREHVNSIKNCEDIAMNYLVSHLTRKPPIKTTS-RWTLKCPT 756
Query: 756 FSGVAISRNTQVHYHKRSECLRKFAEMYG 784
+ T H+ KR EC+R F ++YG
Sbjct: 757 CTESLYKEGT--HFEKRHECMRLFTKIYG 783
|
Probable alpha1,4-N-acetylglucosaminyltransferase required for the biosynthesis of heparan-sulfate. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 802 | ||||||
| 255584380 | 704 | transferase, transferring glycosyl group | 0.847 | 0.965 | 0.788 | 0.0 | |
| 225449643 | 756 | PREDICTED: uncharacterized protein LOC10 | 0.887 | 0.941 | 0.716 | 0.0 | |
| 356535533 | 768 | PREDICTED: uncharacterized protein LOC10 | 0.877 | 0.916 | 0.733 | 0.0 | |
| 356574665 | 761 | PREDICTED: uncharacterized protein LOC10 | 0.867 | 0.914 | 0.737 | 0.0 | |
| 224109898 | 847 | predicted protein [Populus trichocarpa] | 0.947 | 0.897 | 0.642 | 0.0 | |
| 297806429 | 765 | glycosyltransferase family protein 47 [A | 0.916 | 0.960 | 0.643 | 0.0 | |
| 7406454 | 764 | putative protein [Arabidopsis thaliana] | 0.916 | 0.962 | 0.634 | 0.0 | |
| 30680544 | 765 | glycosyltransferase family protein 47 [A | 0.916 | 0.960 | 0.634 | 0.0 | |
| 449449393 | 783 | PREDICTED: uncharacterized protein LOC10 | 0.817 | 0.837 | 0.657 | 0.0 | |
| 168034409 | 741 | predicted protein [Physcomitrella patens | 0.887 | 0.960 | 0.564 | 0.0 |
| >gi|255584380|ref|XP_002532924.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223527317|gb|EEF29466.1| transferase, transferring glycosyl groups, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/690 (78%), Positives = 611/690 (88%), Gaps = 10/690 (1%)
Query: 123 GLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAG 182
GL+S GC++D+EGSWSIGVF+G+SPFSLKPIET NVW+DDSAAWPVANP++TCASVS AG
Sbjct: 15 GLNSVGCRQDNEGSWSIGVFYGHSPFSLKPIETMNVWKDDSAAWPVANPVITCASVSDAG 74
Query: 183 FPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLS 242
FPSNFVADPF Y+QG+ +Y+FYETKNSITMQGDIGVAKS DKGATWQQLGIALDEDWHLS
Sbjct: 75 FPSNFVADPFLYIQGDIIYIFYETKNSITMQGDIGVAKSTDKGATWQQLGIALDEDWHLS 134
Query: 243 FPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWL 302
+PYVFDY G+IYMMPE AKGE+RLYRA+NFPL+W LEKI++KKPLVD F+I HDG++WL
Sbjct: 135 YPYVFDYLGEIYMMPEGSAKGELRLYRAINFPLQWTLEKILIKKPLVDSFVIKHDGEFWL 194
Query: 303 FGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYR 362
FGSDHS FGT +NGQLEIW+SSSP GPWKPHKKNPIYN DKSLGARNGGRPFVYDGNLYR
Sbjct: 195 FGSDHSSFGTKKNGQLEIWHSSSPLGPWKPHKKNPIYNVDKSLGARNGGRPFVYDGNLYR 254
Query: 363 VGQDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARYHHLDAQQLSS 412
+GQDC E+YGRRVR FKVE LTK+ Y E+E GRN WNGARYHHLD QQLS+
Sbjct: 255 IGQDCGETYGRRVRVFKVETLTKDNYNEVEVSLGFEEPSKGRNDWNGARYHHLDVQQLST 314
Query: 413 GEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIPLNWCAQYSGK 472
GEWI +MDGDR SGDSV+R+ILGCAS+AAV ++++LG+LLGAVKCI+PLNWCA YSGK
Sbjct: 315 GEWIGIMDGDRVPSGDSVRRFILGCASLAAVIAIIMVLGVLLGAVKCIVPLNWCAYYSGK 374
Query: 473 RSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCT 532
RSD+LL WER ++ SKVRRFC RLNR+AS L+ KI+PNT G+L LAVIF+AGVAL CT
Sbjct: 375 RSDTLLVWERPNVFSSKVRRFCGRLNRAASSLRAKIRPNTWAGKLALAVIFLAGVALMCT 434
Query: 533 GVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK 592
VK +YGGNGA+E Y G++SQFT+LTMT+DARLWNLKMYVKHYS CSSVKEIVVVWNK
Sbjct: 435 SVKNVYGGNGAEEPYPLNGYHSQFTLLTMTYDARLWNLKMYVKHYSSCSSVKEIVVVWNK 494
Query: 593 GEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQV 652
G PPKLSDLDSAVP+RIRVE +NSLNNRFK D LIKTR VLELDDDIMMTCDDIERGF V
Sbjct: 495 GIPPKLSDLDSAVPIRIRVENKNSLNNRFKKDSLIKTRAVLELDDDIMMTCDDIERGFNV 554
Query: 653 WRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAK 712
WRQ+PDRIVGFYPR ++GSPL+YRGEKYAR HKGYNMILTGAAF+DS++AF RYW E+AK
Sbjct: 555 WRQYPDRIVGFYPRYISGSPLKYRGEKYARTHKGYNMILTGAAFIDSKLAFERYWGEEAK 614
Query: 713 AGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKR 772
AGRE VDK FNCEDVLLNYLYANAS+SKTVEYVRP WAIDTSKFSG AISRNTQ HY R
Sbjct: 615 AGREMVDKNFNCEDVLLNYLYANASSSKTVEYVRPTWAIDTSKFSGAAISRNTQAHYKIR 674
Query: 773 SECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
S CL+KF+EMYGS AGRK EF RKDGWDL
Sbjct: 675 SSCLQKFSEMYGSLAGRKSEFDRRKDGWDL 704
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449643|ref|XP_002262646.1| PREDICTED: uncharacterized protein LOC100242107 [Vitis vinifera] gi|296090371|emb|CBI40190.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/724 (71%), Positives = 611/724 (84%), Gaps = 12/724 (1%)
Query: 89 SSGYFFVVWCFVVYVFVGFLYGWLALKKPYTVAAGLSSFGCQEDSEGSWSIGVFFGNSPF 148
SS + F + FVVY F+ +Y WL + P+ L+S GC+ DSEGSW+IGVF+G+SPF
Sbjct: 35 SSTFVFFIASFVVYGFIAGVYAWLFVN-PHA-PLELASLGCRPDSEGSWAIGVFYGDSPF 92
Query: 149 SLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKN 208
SL+PIE NVWR++SAAWPVANP++TCAS S A FPSNFVADPF Y+QG+ L+LFYETKN
Sbjct: 93 SLRPIEAMNVWRNESAAWPVANPVVTCASASDAVFPSNFVADPFLYVQGDTLFLFYETKN 152
Query: 209 SITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLY 268
SITMQGDIGV+KS DKGATWQ LG+ALDE+WHLS+PYVF+Y G+IYMMPE KGE+R+Y
Sbjct: 153 SITMQGDIGVSKSDDKGATWQHLGVALDEEWHLSYPYVFEYLGKIYMMPECSGKGELRIY 212
Query: 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328
RA+NFPL+W LEKII+KK LVD +INHDG+YW+FGSDH+GFG +NGQ+EIWYSSSPFG
Sbjct: 213 RALNFPLQWTLEKIIIKKHLVDSVIINHDGKYWIFGSDHTGFGAKKNGQMEIWYSSSPFG 272
Query: 329 PWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEY 388
PWKPHKKNPI+N DK GARNGGRPFVY+GNLYR+GQD E+YGRRVR FKVE+LT++E+
Sbjct: 273 PWKPHKKNPIFNTDKRFGARNGGRPFVYNGNLYRMGQDSGETYGRRVRAFKVEVLTQDEF 332
Query: 389 KELE----------GRNAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCA 438
KE+E GRNAWNGARYHHLD QQLS G+WI VMDGDR SGD R+ILGCA
Sbjct: 333 KEVEVSLGIDESNKGRNAWNGARYHHLDVQQLSYGKWIGVMDGDRVPSGDPAHRFILGCA 392
Query: 439 SVAAVGILVVLLGLLLGAVKCIIPLNWCAQYSGKRSDSLLTWERESMLCSKVRRFCSRLN 498
SV V +V+LLG L+GAVKCIIPLNWC SGKRSD LTWER +++ SK+R+ CSRLN
Sbjct: 393 SVVVVVAVVILLGSLVGAVKCIIPLNWCPHNSGKRSDVFLTWERSNLMSSKLRQLCSRLN 452
Query: 499 RSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTM 558
R+ +L+G IKPN+ IGRLV++ IF G L C VK+IYGGNGA+EAY KGHYSQFT+
Sbjct: 453 RAPLFLRGMIKPNSIIGRLVISFIFAVGAVLVCIAVKYIYGGNGAEEAYPLKGHYSQFTL 512
Query: 559 LTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLN 618
LTMT++ARLWNLKMYVKHYSRCSSV+EIVVVWNKG PP+ S+LDSAVPVRIRVE++NSLN
Sbjct: 513 LTMTYEARLWNLKMYVKHYSRCSSVEEIVVVWNKGAPPEPSELDSAVPVRIRVEEKNSLN 572
Query: 619 NRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGE 678
NRFK+DPLIK R VLELDDDIMM+C DIERGF+VWR+HPDRIVGFYPRLV G+ L+Y GE
Sbjct: 573 NRFKIDPLIKNRAVLELDDDIMMSCGDIERGFRVWREHPDRIVGFYPRLVEGNVLKYDGE 632
Query: 679 KYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASA 738
KYAR+ KGYNMILTGAAF+D+Q+AF RYWSE+AKAGR+ VDK+FNCED+LLNYLYANAS+
Sbjct: 633 KYARKLKGYNMILTGAAFIDAQLAFERYWSEEAKAGRKVVDKYFNCEDLLLNYLYANASS 692
Query: 739 SKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKD 798
S+TVEYVRP W IDTSKFSGVAISRNTQ+HY RSECL KF+EMYG +KWEF GR++
Sbjct: 693 SRTVEYVRPTWVIDTSKFSGVAISRNTQLHYRIRSECLLKFSEMYGGLGKQKWEFNGREN 752
Query: 799 GWDL 802
D
Sbjct: 753 RRDF 756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535533|ref|XP_003536299.1| PREDICTED: uncharacterized protein LOC100789310 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/716 (73%), Positives = 606/716 (84%), Gaps = 12/716 (1%)
Query: 98 CFVVYVFVGFLYGWLALKKPYTVAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETAN 157
CFV++ + LYGW A P A SSFGC+ED+EGSWSIGVF+G+SPFSLKPIE AN
Sbjct: 54 CFVLFGSIATLYGWFAFS-PTVHTALSSSFGCREDNEGSWSIGVFYGDSPFSLKPIEAAN 112
Query: 158 VWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIG 217
V D++AAWPVANP++TCASVS G+PSNFVADPF ++QGN YLFYETKNSITMQGDIG
Sbjct: 113 VSNDETAAWPVANPVVTCASVSDVGYPSNFVADPFLFIQGNTFYLFYETKNSITMQGDIG 172
Query: 218 VAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEW 277
V+KS DKGATWQQLGIAL+EDWHLS+PYVF++ GQIYMMPE KG++RLYRAVNFPL+W
Sbjct: 173 VSKSTDKGATWQQLGIALNEDWHLSYPYVFEHDGQIYMMPEGSQKGDLRLYRAVNFPLQW 232
Query: 278 KLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNP 337
+LEK++MKKPLVD F+INH G+YWLFGSDHSGFGT +NGQLEIWYS+SP GPW PHKKNP
Sbjct: 233 RLEKVVMKKPLVDSFVINHGGRYWLFGSDHSGFGTQKNGQLEIWYSNSPLGPWNPHKKNP 292
Query: 338 IYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE----- 392
IYN D+SLGARNGGRPF Y+GNLYR+GQDC ++YGR++R FK+E LT +EYKE+E
Sbjct: 293 IYNIDRSLGARNGGRPFKYEGNLYRMGQDCGDTYGRKLRVFKIETLTIDEYKEVEVPLGF 352
Query: 393 -----GRNAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILV 447
GRNAWNGARYHHLD Q L SG W+ VMDGD SGDSV+R+ +GCASVA IL+
Sbjct: 353 VESNKGRNAWNGARYHHLDVQHLPSGGWVGVMDGDHVPSGDSVRRFTVGCASVAVAAILI 412
Query: 448 VLLGLLLGAVKCIIPLNWCAQYSGKRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGK 507
VLLG+LLG V CI+PLNW SGKR+ ++L+WER ++ CS+VRRFCSRLNR+ ++L+GK
Sbjct: 413 VLLGVLLGFVNCIVPLNWFIHNSGKRNFTVLSWERSNVFCSRVRRFCSRLNRAPTFLRGK 472
Query: 508 IKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARL 567
IK N R +LA+IF GV L C GVK IYGGNG++E Y KG YSQFT+LTMT+DARL
Sbjct: 473 IKHNACARRFILAIIFAVGVGLMCIGVKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARL 532
Query: 568 WNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLI 627
WNLKMYVKHYSRCSSV+EIVVVWNKG PPKLSDLDSAVPVRIR EK+NSLNNRF DPLI
Sbjct: 533 WNLKMYVKHYSRCSSVREIVVVWNKGVPPKLSDLDSAVPVRIREEKKNSLNNRFNADPLI 592
Query: 628 KTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGY 687
KTR VLELDDDIMM CDD+ERGF VWRQHPDRIVGFYPRL++GSPL+YRGEKYAR HKGY
Sbjct: 593 KTRAVLELDDDIMMPCDDVERGFNVWRQHPDRIVGFYPRLIDGSPLKYRGEKYARSHKGY 652
Query: 688 NMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANA-SASKTVEYVR 746
NMILTGAAF+DSQ+AF RY S++A+ GRE VDK FNCEDVLLNYLYANA S+S+TV+YV+
Sbjct: 653 NMILTGAAFIDSQVAFKRYGSKEAEKGRELVDKIFNCEDVLLNYLYANASSSSRTVDYVK 712
Query: 747 PAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
PAWAIDTSKFSG AISRNT+VHY RS CL KF+EMYGS AGRKW F R DGWD+
Sbjct: 713 PAWAIDTSKFSGAAISRNTKVHYQLRSHCLMKFSEMYGSLAGRKWGFDSRNDGWDV 768
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574665|ref|XP_003555466.1| PREDICTED: uncharacterized protein LOC100790409 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/709 (73%), Positives = 601/709 (84%), Gaps = 13/709 (1%)
Query: 105 VGFLYGWLALKKPYTVAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSA 164
+ LYGWLA TV LSSFGC++D+EGSWS+GVF+G+SPFSLKPIE ANV D+SA
Sbjct: 55 IATLYGWLAFSP--TVHTSLSSFGCRDDNEGSWSVGVFYGDSPFSLKPIEAANVSNDESA 112
Query: 165 AWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDK 224
AWPVANP++TCASVS AG+PSNFVADPF ++QGN YLFYETK+SITMQGDIGV+KS DK
Sbjct: 113 AWPVANPVVTCASVSDAGYPSNFVADPFLFIQGNTFYLFYETKSSITMQGDIGVSKSTDK 172
Query: 225 GATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIM 284
GATWQQLGIAL+EDWHLS+PYVF++ GQIYMMPE KG++RLYRAVNFPL+W+LEK++M
Sbjct: 173 GATWQQLGIALNEDWHLSYPYVFEHDGQIYMMPEGSQKGDLRLYRAVNFPLQWRLEKVVM 232
Query: 285 KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS 344
KKPLVD F+INH G+YWLFGSDHSGFGT +NGQLEIWYS+S GPWKPHKKNPIYN DKS
Sbjct: 233 KKPLVDSFVINHGGRYWLFGSDHSGFGTQKNGQLEIWYSNSLLGPWKPHKKNPIYNIDKS 292
Query: 345 LGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE----------GR 394
LGARNGGRPF Y+GN YR+GQDC ++YGR++R FK+E LT EYKE+E GR
Sbjct: 293 LGARNGGRPFKYEGNHYRMGQDCGDTYGRKLRIFKIETLTSGEYKEVEVPLGFVESNKGR 352
Query: 395 NAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLL 454
NAWNGARYHHLD Q L SG W+ VMDGDR SGDSV+R+ +GCASV IL+VLLG+LL
Sbjct: 353 NAWNGARYHHLDVQHLPSGGWVGVMDGDRVPSGDSVRRFTVGCASVVVAVILIVLLGVLL 412
Query: 455 GAVKCIIPLNWCAQYSGKRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSI 514
G V CI+PLNW SGKR+ + L+WER +M S+VRRFCSRLNR+ ++L+GKIK N
Sbjct: 413 GFVNCIVPLNWFIHNSGKRNFTALSWERSNMFSSRVRRFCSRLNRAPTFLRGKIKHNACA 472
Query: 515 GRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYV 574
R +LA+IF GV L C GVK IYGGNG++E Y KG YSQFT+LTMT+DARLWNLKMYV
Sbjct: 473 RRFILAIIFAVGVGLMCIGVKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYV 532
Query: 575 KHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLE 634
KHYSRCSSV+EIVVVWNKG PPKLSDLDSAVPVRIR EK NSLNNRF+ DPLIKTR VLE
Sbjct: 533 KHYSRCSSVREIVVVWNKGVPPKLSDLDSAVPVRIREEKNNSLNNRFRADPLIKTRAVLE 592
Query: 635 LDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGA 694
LDDDIMM CDDIERGF VWRQHPDRIVGFYPRL++GS L+YRGEKYAR HKGYNMILTGA
Sbjct: 593 LDDDIMMPCDDIERGFNVWRQHPDRIVGFYPRLIDGSLLKYRGEKYARMHKGYNMILTGA 652
Query: 695 AFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANA-SASKTVEYVRPAWAIDT 753
AF+DSQ+AF RY S++A+ GRE VD+ FNCEDVLLNYLYANA S+S+TV+YV+PAWAIDT
Sbjct: 653 AFIDSQVAFKRYGSKEAEKGRELVDRIFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDT 712
Query: 754 SKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
SKFSG AISRNT+VHY RS+CL KF+EMYGS AGRKW F RKDGWD+
Sbjct: 713 SKFSGAAISRNTKVHYQLRSQCLMKFSEMYGSLAGRKWGFDSRKDGWDV 761
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109898|ref|XP_002315348.1| predicted protein [Populus trichocarpa] gi|222864388|gb|EEF01519.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/859 (64%), Positives = 637/859 (74%), Gaps = 99/859 (11%)
Query: 25 GVTTTSGSSSNSNSSCYNNS---WLCKWRWPQQQQQHVAKNNNNSNNNNSLKGGGGAGFG 81
GV T G+++ + SC+N S W C+WRW QQQ +N L+
Sbjct: 7 GVNGTDGTATATTCSCWNTSMRCW-CRWRWENHQQQQQQ--------HNVLR-------- 49
Query: 82 GRRLV--LSSSGYFFVVWCFVVYVFVGFLYGWLALKKPY----TVAAGLSSFGCQEDSEG 135
+RLV + SSG+ F + V+Y +G Y WL KPY GL S GCQED+EG
Sbjct: 50 -QRLVSLVFSSGFTFFLGYLVLYGSIGMFYAWLMFSKPYLRSTNAGVGLKSLGCQEDNEG 108
Query: 136 SWSIGVFFGNSPFSLKPIETANVWRDDSAAWP--------------------VANPIMTC 175
SWSIGVF+G+SPFSLKPIE N WRD+ AAWP VA+P +
Sbjct: 109 SWSIGVFYGDSPFSLKPIEAMNEWRDEGAAWPIANPVVTCASLSDAGFPSNFVADPFLYV 168
Query: 176 AS-VSSAGFPSNFVADPF----FYL----------------------------------- 195
+ G ++ + F FYL
Sbjct: 169 QDWIQEFGNSTDEITTKFLCVLFYLALGVFVSGMRASSWKGGEGGRIRKLMEDLSGVESI 228
Query: 196 --QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQI 253
G+ L+LFYETKNSIT QGDIGVAKS+DKGATWQQLGIALDEDWHLS+PYVF+Y GQI
Sbjct: 229 LRTGDTLFLFYETKNSITSQGDIGVAKSIDKGATWQQLGIALDEDWHLSYPYVFNYLGQI 288
Query: 254 YMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTT 313
YMMPES KGE+RLYRA+NFPL+W L+K+++K PLVD F+IN G+YWLFGSDHSG GT
Sbjct: 289 YMMPESSQKGELRLYRALNFPLQWTLDKVLIKNPLVDSFIINRAGEYWLFGSDHSGVGTR 348
Query: 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGR 373
+NGQLEIWYSSSP GPWKPHKKNPIYN DKS+GARNGGRPFVYDGNLYRVGQDC E+YGR
Sbjct: 349 KNGQLEIWYSSSPLGPWKPHKKNPIYNVDKSVGARNGGRPFVYDGNLYRVGQDCGETYGR 408
Query: 374 RVRTFKVEILTKNEYKELE----------GRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423
RVR FKVE+LTK++YKE+E G NAWNGARYHHLD QQLSSG+WIAVMDGDR
Sbjct: 409 RVRIFKVEVLTKDDYKEVEVPLGFEESNKGPNAWNGARYHHLDVQQLSSGKWIAVMDGDR 468
Query: 424 ALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIPLNWCAQYSGKRSDSLLTWERE 483
SGD V R+ILG AS AAV ++VV+LG+LLGAVKCIIPLNWCA +SGKR+++LL ER
Sbjct: 469 VPSGDPVHRFILGSASFAAVTVVVVVLGVLLGAVKCIIPLNWCAHFSGKRNNALLGRERL 528
Query: 484 SMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGA 543
++ SKVRRFCSRLNR ++GKIKPNT G+LVLAVIF G+AL C GVK+ YGGNGA
Sbjct: 529 NLFSSKVRRFCSRLNRVPLSVRGKIKPNTWAGKLVLAVIFAVGIALMCAGVKYFYGGNGA 588
Query: 544 DEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDS 603
+EAY G YSQFT+LTMT+DARLWNLKMYV+HYSRCSSVKEI+VVWNKG PP+ SDLDS
Sbjct: 589 EEAYPLNGSYSQFTLLTMTYDARLWNLKMYVRHYSRCSSVKEIIVVWNKGIPPRSSDLDS 648
Query: 604 AVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663
VPVRIRVE QNSLNNRFK DP+IKTR VLELDDDIMM+CDDIERGF VWRQHPDRIVGF
Sbjct: 649 TVPVRIRVEDQNSLNNRFKKDPMIKTRAVLELDDDIMMSCDDIERGFNVWRQHPDRIVGF 708
Query: 664 YPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFN 723
YPRLV GSPL+YR +KYARRH+ YNMILTGAAF+D +AF RYWS +AKAGRE VD++FN
Sbjct: 709 YPRLVRGSPLKYRDDKYARRHESYNMILTGAAFIDRTLAFERYWSSEAKAGRELVDRYFN 768
Query: 724 CEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMY 783
CEDVLLNYLYANAS+S+TVEYVRP W IDTSKF+GVAIS+NT VHY RS CL KF+++Y
Sbjct: 769 CEDVLLNYLYANASSSQTVEYVRPTWVIDTSKFTGVAISKNTNVHYEIRSNCLLKFSDIY 828
Query: 784 GSFAGRKWEFGGRKDGWDL 802
GS AGRKWEF GRKDGWDL
Sbjct: 829 GSIAGRKWEFNGRKDGWDL 847
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806429|ref|XP_002871098.1| glycosyltransferase family protein 47 [Arabidopsis lyrata subsp. lyrata] gi|297316935|gb|EFH47357.1| glycosyltransferase family protein 47 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/763 (64%), Positives = 598/763 (78%), Gaps = 28/763 (3%)
Query: 56 QQHVAKNNNNSNNNNSLKGGGGAGFGGRRLVLSSSGYFFVVWCFVVYVFVGFLYGWLALK 115
Q++VA + +N +N GAG RR + F CF VY V Y W
Sbjct: 15 QKNVAASGHNHHNRYKYLSNYGAG---RR-------FLFFASCFGVYALVAATYAWFVFP 64
Query: 116 KPY---TVAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPI 172
P+ T SS GC+ED+EGSWSIGVF+G+SPFSLKPIET NVWR++S AWPVANP+
Sbjct: 65 -PHIGRTDHVSSSSLGCREDNEGSWSIGVFYGDSPFSLKPIETINVWRNESGAWPVANPV 123
Query: 173 MTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG 232
+TCAS ++AG PSNFVADPF Y+QG+ LYLF+ETK+ ITMQGDIGVAKS+DKGATW+ LG
Sbjct: 124 ITCASFTNAGLPSNFVADPFLYVQGDTLYLFFETKSPITMQGDIGVAKSIDKGATWEPLG 183
Query: 233 IALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPF 292
IALDE WHLSFP+VF+Y+G+I+MMPES G++ LYRAVNFPL WKLEK+I+KKPLVD
Sbjct: 184 IALDEAWHLSFPFVFNYNGEIFMMPESNEIGQLNLYRAVNFPLSWKLEKVILKKPLVDST 243
Query: 293 MINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGR 352
+I+H+G YWLFGSDHS FG +NGQLEIWYSSSP G WKPHKKNPIYNG++S+GARNGGR
Sbjct: 244 LIHHEGIYWLFGSDHSSFGAKKNGQLEIWYSSSPLGTWKPHKKNPIYNGNRSVGARNGGR 303
Query: 353 PFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARY 402
F+YDGNLYRVGQDC E+YG+R+R FK+E+L+K EY+E+E G+N+WNG R
Sbjct: 304 AFLYDGNLYRVGQDCGENYGKRIRVFKIEVLSKEEYREVEVPFSFEASHKGKNSWNGVRQ 363
Query: 403 HHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIP 462
HH D +QLSSGE+I ++DGDR SGD R ILG AS+AA +V+LLG LLG V CI+P
Sbjct: 364 HHFDVKQLSSGEFIGLLDGDRVTSGDLFHRVILGYASLAAAISVVILLGFLLGVVNCIVP 423
Query: 463 LNWCAQ-YSGKRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAV 521
WC Y+GKR+D+LL E + K+RR SRLNR +L+G +KPN+S+G+ L V
Sbjct: 424 STWCMNYYAGKRTDALLNLETAGLFSEKLRRIGSRLNRVPPFLRGFVKPNSSMGKFTLGV 483
Query: 522 IFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCS 581
I + G+ LTC GV++IYGG+G E Y +KGH SQFT+ TMT+DARLWNLKMYVK YSRC
Sbjct: 484 IVLVGLLLTCVGVRYIYGGSGTVEPYPFKGHLSQFTLATMTYDARLWNLKMYVKRYSRCP 543
Query: 582 SVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMM 641
SVKEIVV+WNKG PP+L++LDSAVPVRIRV+KQNSLNNRF++DPLIKTR VLELDDDIMM
Sbjct: 544 SVKEIVVIWNKGPPPELTELDSAVPVRIRVQKQNSLNNRFEIDPLIKTRAVLELDDDIMM 603
Query: 642 TCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQI 701
CDDIE+GF+VWR+HP+R+VGFYPR V+ + + Y EK+AR HKGYNMILTGAAF+D +
Sbjct: 604 PCDDIEKGFRVWREHPERLVGFYPRFVDQT-MTYSAEKFARSHKGYNMILTGAAFMDVRF 662
Query: 702 AFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASA-SKTVEYVRPAW-AIDTSKFSGV 759
AF+ Y S++AK GREFV + FNCED+LLN+LYANAS K VEYVRP+ IDTSKFSGV
Sbjct: 663 AFDMYQSDKAKLGREFVGEQFNCEDILLNFLYANASGWGKAVEYVRPSLVTIDTSKFSGV 722
Query: 760 AISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
AIS NT HY KRS+CLR+F+++YGS A R WEFGGRKDGWDL
Sbjct: 723 AISGNTNQHYRKRSKCLRRFSDLYGSLADRIWEFGGRKDGWDL 765
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7406454|emb|CAB85556.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/763 (63%), Positives = 594/763 (77%), Gaps = 28/763 (3%)
Query: 56 QQHVAKNNNNSNNNNSLKGGGGAGFGGRRLVLSSSGYFFVVWCFVVYVFVGFLYGWLALK 115
Q++VA + +N ++ G G RR + F CF Y FV Y W
Sbjct: 14 QKNVAASGHNHHHRYKYISNYGVG---RR-------FLFFASCFGFYAFVAATYAWFVFP 63
Query: 116 KPY---TVAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPI 172
P+ T SS GC+ED+EGSWSIGVF+G+SPFSLKPIET NVWR++S AWPV NP+
Sbjct: 64 -PHIGRTDHVSSSSLGCREDNEGSWSIGVFYGDSPFSLKPIETRNVWRNESGAWPVTNPV 122
Query: 173 MTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG 232
+TCAS +++G PSNF+ADPF Y+QG+ LYLF+ETK+ ITMQGDIG AKS+DKGATW+ LG
Sbjct: 123 ITCASFTNSGLPSNFLADPFLYVQGDTLYLFFETKSPITMQGDIGAAKSIDKGATWEPLG 182
Query: 233 IALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPF 292
IALDE WHLSFP+VF+Y+G+IYMMPES G++ LYRAVNFPL WKLEK+I+KKPLVD
Sbjct: 183 IALDEAWHLSFPFVFNYNGEIYMMPESNEIGQLNLYRAVNFPLSWKLEKVILKKPLVDST 242
Query: 293 MINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGR 352
+++H+G YWL GSDH+GFG +NGQLEIWYSSSP G WKPHKKNPIYNG +S+GARNGGR
Sbjct: 243 IVHHEGIYWLIGSDHTGFGAKKNGQLEIWYSSSPLGTWKPHKKNPIYNGKRSIGARNGGR 302
Query: 353 PFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARY 402
F+YDG+LYRVGQDC E+YG+R+R K+E+L+K EY+E+E G+N+WNG R
Sbjct: 303 AFLYDGSLYRVGQDCGENYGKRIRVSKIEVLSKEEYREVEVPFSLEASRKGKNSWNGVRQ 362
Query: 403 HHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIP 462
HH D +QLSSGE+I ++DGDR SGD R ILG AS+AA +V+LLG LLG V CI+P
Sbjct: 363 HHFDVKQLSSGEFIGLVDGDRVTSGDLFHRVILGYASLAAAISVVILLGFLLGVVNCIVP 422
Query: 463 LNWCAQ-YSGKRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAV 521
WC Y+GKR+D+LL E + K+RR SRLNR +L+G +KPN+S+G+ L V
Sbjct: 423 STWCMNYYAGKRTDALLNLETAGLFSEKLRRIGSRLNRVPPFLRGFVKPNSSMGKFTLGV 482
Query: 522 IFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCS 581
I + G+ LTC GV++IYGG+GA E Y +KGH SQFT+ TMT+DARLWNLKMYVK YSRC
Sbjct: 483 IVILGLLLTCVGVRYIYGGSGAVEPYPFKGHLSQFTLATMTYDARLWNLKMYVKRYSRCP 542
Query: 582 SVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMM 641
SVKEIVV+WNKG PP LS+LDSAVPVRIRV+KQNSLNNRF++DPLIKTR VLELDDDIMM
Sbjct: 543 SVKEIVVIWNKGPPPDLSELDSAVPVRIRVQKQNSLNNRFEIDPLIKTRAVLELDDDIMM 602
Query: 642 TCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQI 701
CDDIE+GF+VWR+HP+R+VGFYPR V+ + + Y EK+AR HKGYNMILTGAAF+D +
Sbjct: 603 PCDDIEKGFRVWREHPERLVGFYPRFVDQT-MTYSAEKFARSHKGYNMILTGAAFMDVRF 661
Query: 702 AFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASAS-KTVEYVRPAW-AIDTSKFSGV 759
AF+ Y S++AK GR FVD+ FNCED+LLN+LYANAS S K VEYVRP+ IDTSKFSGV
Sbjct: 662 AFDMYQSDKAKLGRVFVDEQFNCEDILLNFLYANASGSGKAVEYVRPSLVTIDTSKFSGV 721
Query: 760 AISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
AIS NT HY KRS+CLR+F+++YGS R+WEFGGRKDGWDL
Sbjct: 722 AISGNTNQHYRKRSKCLRRFSDLYGSLVDRRWEFGGRKDGWDL 764
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680544|ref|NP_196070.2| glycosyltransferase family protein 47 [Arabidopsis thaliana] gi|28393253|gb|AAO42055.1| unknown protein [Arabidopsis thaliana] gi|332003370|gb|AED90753.1| glycosyltransferase family protein 47 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/763 (63%), Positives = 594/763 (77%), Gaps = 28/763 (3%)
Query: 56 QQHVAKNNNNSNNNNSLKGGGGAGFGGRRLVLSSSGYFFVVWCFVVYVFVGFLYGWLALK 115
Q++VA + +N ++ G G RR + F CF Y FV Y W
Sbjct: 15 QKNVAASGHNHHHRYKYISNYGVG---RR-------FLFFASCFGFYAFVAATYAWFVFP 64
Query: 116 KPY---TVAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPI 172
P+ T SS GC+ED+EGSWSIGVF+G+SPFSLKPIET NVWR++S AWPV NP+
Sbjct: 65 -PHIGRTDHVSSSSLGCREDNEGSWSIGVFYGDSPFSLKPIETRNVWRNESGAWPVTNPV 123
Query: 173 MTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG 232
+TCAS +++G PSNF+ADPF Y+QG+ LYLF+ETK+ ITMQGDIG AKS+DKGATW+ LG
Sbjct: 124 ITCASFTNSGLPSNFLADPFLYVQGDTLYLFFETKSPITMQGDIGAAKSIDKGATWEPLG 183
Query: 233 IALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPF 292
IALDE WHLSFP+VF+Y+G+IYMMPES G++ LYRAVNFPL WKLEK+I+KKPLVD
Sbjct: 184 IALDEAWHLSFPFVFNYNGEIYMMPESNEIGQLNLYRAVNFPLSWKLEKVILKKPLVDST 243
Query: 293 MINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGR 352
+++H+G YWL GSDH+GFG +NGQLEIWYSSSP G WKPHKKNPIYNG +S+GARNGGR
Sbjct: 244 IVHHEGIYWLIGSDHTGFGAKKNGQLEIWYSSSPLGTWKPHKKNPIYNGKRSIGARNGGR 303
Query: 353 PFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARY 402
F+YDG+LYRVGQDC E+YG+R+R K+E+L+K EY+E+E G+N+WNG R
Sbjct: 304 AFLYDGSLYRVGQDCGENYGKRIRVSKIEVLSKEEYREVEVPFSLEASRKGKNSWNGVRQ 363
Query: 403 HHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIP 462
HH D +QLSSGE+I ++DGDR SGD R ILG AS+AA +V+LLG LLG V CI+P
Sbjct: 364 HHFDVKQLSSGEFIGLVDGDRVTSGDLFHRVILGYASLAAAISVVILLGFLLGVVNCIVP 423
Query: 463 LNWCAQ-YSGKRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAV 521
WC Y+GKR+D+LL E + K+RR SRLNR +L+G +KPN+S+G+ L V
Sbjct: 424 STWCMNYYAGKRTDALLNLETAGLFSEKLRRIGSRLNRVPPFLRGFVKPNSSMGKFTLGV 483
Query: 522 IFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCS 581
I + G+ LTC GV++IYGG+GA E Y +KGH SQFT+ TMT+DARLWNLKMYVK YSRC
Sbjct: 484 IVILGLLLTCVGVRYIYGGSGAVEPYPFKGHLSQFTLATMTYDARLWNLKMYVKRYSRCP 543
Query: 582 SVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMM 641
SVKEIVV+WNKG PP LS+LDSAVPVRIRV+KQNSLNNRF++DPLIKTR VLELDDDIMM
Sbjct: 544 SVKEIVVIWNKGPPPDLSELDSAVPVRIRVQKQNSLNNRFEIDPLIKTRAVLELDDDIMM 603
Query: 642 TCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQI 701
CDDIE+GF+VWR+HP+R+VGFYPR V+ + + Y EK+AR HKGYNMILTGAAF+D +
Sbjct: 604 PCDDIEKGFRVWREHPERLVGFYPRFVDQT-MTYSAEKFARSHKGYNMILTGAAFMDVRF 662
Query: 702 AFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASAS-KTVEYVRPAW-AIDTSKFSGV 759
AF+ Y S++AK GR FVD+ FNCED+LLN+LYANAS S K VEYVRP+ IDTSKFSGV
Sbjct: 663 AFDMYQSDKAKLGRVFVDEQFNCEDILLNFLYANASGSGKAVEYVRPSLVTIDTSKFSGV 722
Query: 760 AISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
AIS NT HY KRS+CLR+F+++YGS R+WEFGGRKDGWDL
Sbjct: 723 AISGNTNQHYRKRSKCLRRFSDLYGSLVDRRWEFGGRKDGWDL 765
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449393|ref|XP_004142449.1| PREDICTED: uncharacterized protein LOC101212638 [Cucumis sativus] gi|449513220|ref|XP_004164265.1| PREDICTED: uncharacterized LOC101212638 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/751 (65%), Positives = 573/751 (76%), Gaps = 95/751 (12%)
Query: 105 VGFLYGWLALKKPYT-VAAGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDS 163
+ LY WLA Y G+SS GCQED+EGSWSIGVF+G+SPFSLKPIE ANVWR++S
Sbjct: 75 IATLYAWLAFTPQYVRTIGGVSSLGCQEDNEGSWSIGVFYGDSPFSLKPIEDANVWRNES 134
Query: 164 AAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD 223
AAWPVANP++ CASVS+AGFPSNFVADPF ++QG+ +YLFYETKNS+++QGDIGVAKSVD
Sbjct: 135 AAWPVANPVINCASVSNAGFPSNFVADPFLFVQGDTIYLFYETKNSVSLQGDIGVAKSVD 194
Query: 224 KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKII 283
GATWQQLG+AL+E WHLSFP+VF++ G+IYMMPES KGEVRLYRAVNFPL+W+L++II
Sbjct: 195 NGATWQQLGVALNEKWHLSFPFVFEHLGEIYMMPESSKKGEVRLYRAVNFPLKWELDRII 254
Query: 284 MKKPLVDPFMINHDGQYWLFGSDHS----------------------------------- 308
+KKPLVD +INH+G YWLFGSDH
Sbjct: 255 LKKPLVDSVIINHNGMYWLFGSDHRGLGTKRNGHLAIWYSSSPLGPWKAHKRNPIYNVDK 314
Query: 309 -------GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLY 361
GRPF+++G+LY
Sbjct: 315 SFGARNG------------------------------------------GRPFLHEGSLY 332
Query: 362 RVGQDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARYHHLDAQQLS 411
R+GQDC E+YG++VR FK+EILT + YKE+E GRNAWNG RYHHLDAQQLS
Sbjct: 333 RIGQDCGETYGKKVRVFKIEILTTDSYKEVEVPSGLVEPVKGRNAWNGVRYHHLDAQQLS 392
Query: 412 SGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIPLNWCAQYSG 471
SG+WI VMDGDR SGDS+ R+ LGCAS A V +LVVLLG+LLGAV CI+PLNWC SG
Sbjct: 393 SGKWIGVMDGDRVPSGDSIHRFFLGCASFAVVAVLVVLLGVLLGAVNCIVPLNWCVYTSG 452
Query: 472 KRSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTC 531
KRSD++LTWE+ ++ SKVRRFCSR+NR+ S L+ +K NT GRLVLA++FV GVAL C
Sbjct: 453 KRSDAILTWEKSNLFSSKVRRFCSRVNRAPSVLRSWVKSNTCTGRLVLAILFVFGVALMC 512
Query: 532 TGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWN 591
T VK+IYGGNGA EAY +K HYSQFT+LTMT+DARLWNLKMYVKHYSRCSSV+EIVVVWN
Sbjct: 513 TAVKYIYGGNGAQEAYPFKDHYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVREIVVVWN 572
Query: 592 KGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQ 651
KG PPK+SDLDS VPVRIR EK+NSLNNRF LDP IKTR VLELDDDIMMTCDD+ERGF+
Sbjct: 573 KGTPPKISDLDSIVPVRIRSEKKNSLNNRFNLDPSIKTRAVLELDDDIMMTCDDVERGFR 632
Query: 652 VWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQA 711
VWRQHPDRIVGFYPRLVNG+PL+YR EKYAR HKGYNMILTGAAF+DSQ+AF RYWS A
Sbjct: 633 VWRQHPDRIVGFYPRLVNGNPLQYRAEKYARSHKGYNMILTGAAFIDSQLAFQRYWSAAA 692
Query: 712 KAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHK 771
K GR+ VDK FNCEDVLLN+LYANAS+++TVEYVRPAWAIDTSKFSG AIS+NTQVHY
Sbjct: 693 KPGRDLVDKIFNCEDVLLNFLYANASSTQTVEYVRPAWAIDTSKFSGAAISKNTQVHYQL 752
Query: 772 RSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
RSECL KF+E+Y RKW F GRKDGWDL
Sbjct: 753 RSECLNKFSELYAKLGDRKWGFDGRKDGWDL 783
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168034409|ref|XP_001769705.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679054|gb|EDQ65506.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/725 (56%), Positives = 524/725 (72%), Gaps = 13/725 (1%)
Query: 89 SSGYFFVVWCFVVYVFVGFLYGWLALKKPYTVAAGLSSFGCQEDSEGSWSIGVFFGNSPF 148
S+ + + F+ + VG Y WLA PY + S GCQ D+EGSWSIG+F G+SPF
Sbjct: 17 STTLLYYIMSFIFFSIVGVFYAWLAFS-PYKNISDAVSTGCQPDNEGSWSIGLFRGSSPF 75
Query: 149 SLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKN 208
SLKPIE N +++AAWPVANP+ TCASV+S PSNFVADPF Y+ G+ +YLF+ETKN
Sbjct: 76 SLKPIEMTNAPNNETAAWPVANPVFTCASVTSLTHPSNFVADPFLYILGSKMYLFFETKN 135
Query: 209 SITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLY 268
S+TMQGDIGVA+S D+G TW+ LGIALDE+WHLS+PYVF+Y G+IYMMPE G++RLY
Sbjct: 136 SLTMQGDIGVAESSDQGLTWKYLGIALDEEWHLSYPYVFEYEGEIYMMPEGSRNGDLRLY 195
Query: 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328
+A FP++W+ K ++ +PLVD M+ HDG YW+F S+H F + +NGQLE+W + SP G
Sbjct: 196 KATKFPVQWEFHKTLIDQPLVDASMVQHDGNYWMFASNHKRFNSRKNGQLEVWVAPSPLG 255
Query: 329 PWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEY 388
PWK H KNPI NG KS GARNGG PFV++G LYR+GQDC E+YGRR+R F V LTK+ Y
Sbjct: 256 PWKEHSKNPIRNGPKSDGARNGGSPFVHEGKLYRLGQDCGETYGRRLRVFHVVTLTKDLY 315
Query: 389 KELE----------GRNAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCA 438
E+E GRNAWNG RYHHL+ QL SGEWIAV DGDR SGD + LG
Sbjct: 316 HEVEVPLNLEESKKGRNAWNGMRYHHLNPHQLPSGEWIAVGDGDRVPSGDLEMQLALGVG 375
Query: 439 SVAAVGILVVLLGLLLGAVKC-IIPLNWCAQYSGKRSDSLLTWERESMLCSKVRRFCSRL 497
++ V +L + +G++ G +C + PL+ S K +++LL W L ++ R SRL
Sbjct: 376 ALLIVVLLSITVGVVSGYGRCWLPPLSITLPGSKKPTETLLPWVMRPQLSGRLYRSVSRL 435
Query: 498 NRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFT 557
NR S L+ + N+ + FV V C V +GGNGA E + G YSQFT
Sbjct: 436 NRVGSTLRKSLPANSCFRCSFGVLCFVISVCAICVVVSSFFGGNGAQEPHPVNGQYSQFT 495
Query: 558 MLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS-DLDSAVPVRIRVEKQNS 616
M+ MT+DARLWNL+MYVKHYSRC+SV+EIVVVWNKG PP + D DSAVPVRIRVE +NS
Sbjct: 496 MVAMTYDARLWNLQMYVKHYSRCTSVREIVVVWNKGTPPNPALDFDSAVPVRIRVEPKNS 555
Query: 617 LNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYR 676
LNNRFK D LIKT+ VLELDDDI+MTCDD+ERGF+ WR+HP+R+VG+YPRLV G+PL+YR
Sbjct: 556 LNNRFKPDHLIKTKAVLELDDDILMTCDDVERGFRAWREHPNRLVGYYPRLVEGNPLQYR 615
Query: 677 GEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANA 736
E+YA GYNMILTGAAF+D+++AF++YWSE A GR VD+ FNCED+L+N++ AN
Sbjct: 616 NERYAHSQAGYNMILTGAAFMDNEVAFSKYWSEDAAKGRAVVDELFNCEDILMNFVLANQ 675
Query: 737 SASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGR 796
++ + +EYV PAWA+DTSKFS AISR+TQ HY KR+ECL +F+E + ++W+F R
Sbjct: 676 TSERALEYVHPAWAVDTSKFSSSAISRDTQGHYAKRTECLSRFSEHFNGMPLKRWDFLSR 735
Query: 797 KDGWD 801
+DGWD
Sbjct: 736 QDGWD 740
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 802 | ||||||
| TAIR|locus:2184347 | 765 | AT5G04500 "AT5G04500" [Arabido | 0.844 | 0.884 | 0.659 | 1.6e-262 | |
| FB|FBgn0029175 | 717 | Ext2 "Ext2" [Drosophila melano | 0.286 | 0.320 | 0.336 | 1.3e-27 | |
| ZFIN|ZDB-GENE-060929-1122 | 332 | extl2 "exotoses (multiple)-lik | 0.341 | 0.825 | 0.3 | 2.8e-25 | |
| FB|FBgn0027535 | 972 | botv "brother of tout-velu" [D | 0.294 | 0.242 | 0.334 | 1.4e-24 | |
| ZFIN|ZDB-GENE-041124-3 | 719 | ext2 "exostoses (multiple) 2" | 0.280 | 0.312 | 0.334 | 2.6e-24 | |
| ZFIN|ZDB-GENE-041124-2 | 917 | extl3 "exostoses (multiple)-li | 0.295 | 0.258 | 0.322 | 7.1e-24 | |
| MGI|MGI:108050 | 718 | Ext2 "exostoses (multiple) 2" | 0.280 | 0.313 | 0.334 | 9.1e-24 | |
| UNIPROTKB|E9PTT2 | 718 | Ext2 "Protein Ext2" [Rattus no | 0.280 | 0.313 | 0.334 | 9.1e-24 | |
| UNIPROTKB|F1NR24 | 719 | EXT2 "Uncharacterized protein" | 0.280 | 0.312 | 0.334 | 9.1e-24 | |
| UNIPROTKB|A0JN91 | 718 | EXT2 "Exostoses (Multiple) 2" | 0.280 | 0.313 | 0.334 | 1.2e-23 |
| TAIR|locus:2184347 AT5G04500 "AT5G04500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2526 (894.3 bits), Expect = 1.6e-262, P = 1.6e-262
Identities = 456/691 (65%), Positives = 555/691 (80%)
Query: 125 SSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFP 184
SS GC+ED+EGSWSIGVF+G+SPFSLKPIET NVWR++S AWPV NP++TCAS +++G P
Sbjct: 76 SSLGCREDNEGSWSIGVFYGDSPFSLKPIETRNVWRNESGAWPVTNPVITCASFTNSGLP 135
Query: 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFP 244
SNF+ADPF Y+QG+ LYLF+ETK+ ITMQGDIG AKS+DKGATW+ LGIALDE WHLSFP
Sbjct: 136 SNFLADPFLYVQGDTLYLFFETKSPITMQGDIGAAKSIDKGATWEPLGIALDEAWHLSFP 195
Query: 245 YVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFG 304
+VF+Y+G+IYMMPES G++ LYRAVNFPL WKLEK+I+KKPLVD +++H+G YWL G
Sbjct: 196 FVFNYNGEIYMMPESNEIGQLNLYRAVNFPLSWKLEKVILKKPLVDSTIVHHEGIYWLIG 255
Query: 305 SDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG 364
SDH+GFG +NGQLEIWYSSSP G WKPHKKNPIYNG +S+GARNGGR F+YDG+LYRVG
Sbjct: 256 SDHTGFGAKKNGQLEIWYSSSPLGTWKPHKKNPIYNGKRSIGARNGGRAFLYDGSLYRVG 315
Query: 365 QDCAESYGRRVRTFKVEILTKNEYKELE----------GRNAWNGARYHHLDAQQLSSGE 414
QDC E+YG+R+R K+E+L+K EY+E+E G+N+WNG R HH D +QLSSGE
Sbjct: 316 QDCGENYGKRIRVSKIEVLSKEEYREVEVPFSLEASRKGKNSWNGVRQHHFDVKQLSSGE 375
Query: 415 WIAVMDGDRALSGDSVQRYILGCASXXXXXXXXXXXXXXXXXXKCIIPLNWCAQY-SGKR 473
+I ++DGDR SGD R ILG AS CI+P WC Y +GKR
Sbjct: 376 FIGLVDGDRVTSGDLFHRVILGYASLAAAISVVILLGFLLGVVNCIVPSTWCMNYYAGKR 435
Query: 474 SDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTG 533
+D+LL E + K+RR SRLNR +L+G +KPN+S+G+ L VI + G+ LTC G
Sbjct: 436 TDALLNLETAGLFSEKLRRIGSRLNRVPPFLRGFVKPNSSMGKFTLGVIVILGLLLTCVG 495
Query: 534 VKFIYGGNGADEAYMWKGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKG 593
V++IYGG+GA E Y +KGH SQFT+ TMT+DARLWNLKMYVK YSRC SVKEIVV+WNKG
Sbjct: 496 VRYIYGGSGAVEPYPFKGHLSQFTLATMTYDARLWNLKMYVKRYSRCPSVKEIVVIWNKG 555
Query: 594 EPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653
PP LS+LDSAVPVRIRV+KQNSLNNRF++DPLIKTR VLELDDDIMM CDDIE+GF+VW
Sbjct: 556 PPPDLSELDSAVPVRIRVQKQNSLNNRFEIDPLIKTRAVLELDDDIMMPCDDIEKGFRVW 615
Query: 654 RQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKA 713
R+HP+R+VGFYPR V+ + + Y EK+AR HKGYNMILTGAAF+D + AF+ Y S++AK
Sbjct: 616 REHPERLVGFYPRFVDQT-MTYSAEKFARSHKGYNMILTGAAFMDVRFAFDMYQSDKAKL 674
Query: 714 GREFVDKFFNCEDVLLNYLYANASAS-KTVEYVRPAWA-IDTSKFSGVAISRNTQVHYHK 771
GR FVD+ FNCED+LLN+LYANAS S K VEYVRP+ IDTSKFSGVAIS NT HY K
Sbjct: 675 GRVFVDEQFNCEDILLNFLYANASGSGKAVEYVRPSLVTIDTSKFSGVAISGNTNQHYRK 734
Query: 772 RSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802
RS+CLR+F+++YGS R+WEFGGRKDGWDL
Sbjct: 735 RSKCLRRFSDLYGSLVDRRWEFGGRKDGWDL 765
|
|
| FB|FBgn0029175 Ext2 "Ext2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 83/247 (33%), Positives = 138/247 (55%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWN--KGEPPKLSDLDS-AVPVRIRVE 612
FT + +T+D R+ +L + ++ + S++ I+V+WN K PP LS S + P++IR
Sbjct: 455 FTAVILTYD-RVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLSTFPSISKPLKIRQT 513
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
K+N L+NRF P I+T +L +DDDI M+T D+++ G++VWR+ PD IVGF R+
Sbjct: 514 KENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDFGYEVWREFPDHIVGFPSRIHVWE 573
Query: 672 PLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQ---AKAG--REFVDKFFNCED 726
+ R + +M+LTGAAF ++YWS A G +++VD+ NCED
Sbjct: 574 NVTMRWHYESEWTNQISMVLTGAAF------HHKYWSHMYTHAMPGDIKDWVDEHMNCED 627
Query: 727 VLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSF 786
+ +N+L AN + + ++ V P + + + H +RS C+ +F+++YG
Sbjct: 628 IAMNFLVANITNNPPIK-VTPRKKFKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRM 686
Query: 787 AGRKWEF 793
R EF
Sbjct: 687 PLRTVEF 693
|
|
| ZFIN|ZDB-GENE-060929-1122 extl2 "exotoses (multiple)-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 90/300 (30%), Positives = 151/300 (50%)
Query: 506 GKIKPNTSIGRLVLAVIFVAGVALTCT-----GVKFIYG-GNGADEAYMWKGHYSQFTML 559
G+++ + IG ++L + +AGV+LT + + ++ + FT++
Sbjct: 12 GRVRTHVVIGFILL--LLLAGVSLTFLLPNNEDINILRELRRSSNTSRTLADPEESFTII 69
Query: 560 TMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK-GE-PPKL--SDLDS-AVPVRIRVEKQ 614
T++ R L + HY ++ I++VWN GE PP+ +L VPV R ++
Sbjct: 70 MQTYN-RTDVLLRLLNHYQAVPHLQCIIIVWNNPGETPPRRLWDELGPHPVPVLFREQRV 128
Query: 615 NSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPR--LVNGSP 672
N + NR + P +KT VL LDDDI+++ DI F VW+Q PD+IVGF PR + + S
Sbjct: 129 NRMRNRLMMHPDVKTDAVLMLDDDILLSVPDISFAFSVWKQFPDQIVGFVPRKHVSSASG 188
Query: 673 L-RYRGEKYARRHKG----YNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDV 727
+ Y + KG Y+MIL GA+F + F + + EQ +D+ NC+D+
Sbjct: 189 VYSYGSFELQDPDKGGGDRYSMILVGASFFHRR--FLKQFQEQPAEVHTLLDRTQNCDDI 246
Query: 728 LLNYLYANASASK-TVEYVRPAWAIDTSK--FSGVAISRNTQVHYHKRSECLRKFAEMYG 784
+N++ A + + + +V+P + K SG + H +RS CL K A++YG
Sbjct: 247 AMNFIVARQLSKRPSGVFVKPVHMSNLEKDASSGFVGMWHRPEHMLQRSYCLNKLAQIYG 306
|
|
| FB|FBgn0027535 botv "brother of tout-velu" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 86/257 (33%), Positives = 136/257 (52%)
Query: 539 GGNGADEAYMWKGHY--SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPP 596
GG G + G+Y QFT++ +T++ + + Y + ++VVVWN +PP
Sbjct: 695 GGAGKEFGESLGGNYPREQFTIVMLTYEREQVLMDSLGRLYG-LPYLHKVVVVWNSPKPP 753
Query: 597 KLSDL---DSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653
L DL D VPV + +NSLNNRF +I+T VL +DDD + D+I GF+VW
Sbjct: 754 -LDDLRWPDIGVPVAVLRAPRNSLNNRFLPFDVIETEAVLSVDDDAHLRHDEILFGFRVW 812
Query: 654 RQHPDRIVGF---YPRLVNGSPLRYRGE-KYARRHK-GYNMILTGAAFVDSQIAFNRYWS 708
R+H DR+VGF Y G+P G+ Y + +M+LTGAAFV + Y
Sbjct: 813 REHRDRVVGFPGRYHAWDLGNP---NGQWHYNSNYSCELSMVLTGAAFVHKYYLY-LYTY 868
Query: 709 EQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQ-V 767
+A R+ VD++ NCED+ +N+L ++ + V+ V W T + G +S +
Sbjct: 869 HLPQAIRDKVDEYMNCEDIAMNFLVSHITRKPPVK-VTSRW---TFRCPGCPVSLSEDDT 924
Query: 768 HYHKRSECLRKFAEMYG 784
H+ +R +C+ F+ ++G
Sbjct: 925 HFQERHKCINFFSRVFG 941
|
|
| ZFIN|ZDB-GENE-041124-3 ext2 "exostoses (multiple) 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 79/236 (33%), Positives = 129/236 (54%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGE--PPKLSDLDS-AVPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S AVP+++
Sbjct: 457 FTAVVLTYD-RIESLFRVITEISKVPSLAKLLVVWNNQNKSPPEESLWPKVAVPLKVVRT 515
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
K+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG YP ++
Sbjct: 516 KENKLSNRFFPFDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVG-YPGRLHLW 574
Query: 672 PLRYRGEKYARRHKG-YNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLL 729
KY +M+LTGAAF FN ++ + + +VD NCED+ +
Sbjct: 575 DHEMGKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAM 632
Query: 730 NYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGS 785
N+L AN + ++ V P + + + Q H +RSEC+ KFA ++G+
Sbjct: 633 NFLVANITGKAPIK-VTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGT 687
|
|
| ZFIN|ZDB-GENE-041124-2 extl3 "exostoses (multiple)-like 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 7.1e-24, P = 7.1e-24
Identities = 82/254 (32%), Positives = 136/254 (53%)
Query: 539 GGNGADEAYMWKGHY--SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPP 596
GG+G + G+ QFT++ +T++ R L ++ + + ++VVVWN +PP
Sbjct: 642 GGSGKEFQAALGGNVPREQFTVVMLTYE-REEVLMNSLERLNGLPYLNKVVVVWNSPKPP 700
Query: 597 KLSDL---DSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653
DL D +P+ + +NSLNNRF I+T +L +DDD + D+I GF+VW
Sbjct: 701 S-DDLLWPDIGLPIVVVRTGKNSLNNRFLPWDAIETEAILSIDDDAHLRHDEIMFGFRVW 759
Query: 654 RQHPDRIVGFYPRLVNGSPLRYRGEKYARRHK-GYNMILTGAAFVDSQIAFNRYWSEQAK 712
R+ DRIVGF P + L ++ Y + +M+LTGAAF A+ Y +
Sbjct: 760 REARDRIVGF-PGRFHAWDLNHQSWLYNSNYSCELSMVLTGAAFFHKYYAY-LYSYVMPR 817
Query: 713 AGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGV--AISRNTQVHYH 770
A R+ VD++ NCED+ +N+L ++ + ++ V W T + G A+S + H+H
Sbjct: 818 AIRDMVDEYINCEDIAMNFLVSHITRKPPIK-VTSRW---TFRCPGCPQALSHDDS-HFH 872
Query: 771 KRSECLRKFAEMYG 784
+R +C+ F ++YG
Sbjct: 873 ERHKCINFFVKVYG 886
|
|
| MGI|MGI:108050 Ext2 "exostoses (multiple) 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 9.1e-24, P = 9.1e-24
Identities = 79/236 (33%), Positives = 127/236 (53%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGE--PPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEESLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG YP ++
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVG-YPGRLHLW 573
Query: 672 PLRYRGEKYARRHKG-YNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLL 729
KY +M+LTGAAF FN ++ + + +VD NCED+ +
Sbjct: 574 DHEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDTHMNCEDIAM 631
Query: 730 NYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGS 785
N+L AN + K V V P + + + Q H +RSEC+ KFA ++G+
Sbjct: 632 NFLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGT 686
|
|
| UNIPROTKB|E9PTT2 Ext2 "Protein Ext2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 9.1e-24, P = 9.1e-24
Identities = 79/236 (33%), Positives = 127/236 (53%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGE--PPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEESLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG YP ++
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVG-YPGRLHLW 573
Query: 672 PLRYRGEKYARRHKG-YNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLL 729
KY +M+LTGAAF FN ++ + + +VD NCED+ +
Sbjct: 574 DHEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAM 631
Query: 730 NYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGS 785
N+L AN + K V V P + + + Q H +RSEC+ KFA ++G+
Sbjct: 632 NFLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGT 686
|
|
| UNIPROTKB|F1NR24 EXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 9.1e-24, P = 9.1e-24
Identities = 79/236 (33%), Positives = 128/236 (54%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGE--PPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 457 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKIRVPLKVVRT 515
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG YP ++
Sbjct: 516 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVG-YPGRLHLW 574
Query: 672 PLRYRGEKYARRHKG-YNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLL 729
KY +M+LTGAAF FN ++ + + +VD NCED+ +
Sbjct: 575 DHEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAM 632
Query: 730 NYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGS 785
N+L AN + K+V V P + + + Q H +RSEC+ KFA ++G+
Sbjct: 633 NFLVANVTG-KSVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGT 687
|
|
| UNIPROTKB|A0JN91 EXT2 "Exostoses (Multiple) 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 79/236 (33%), Positives = 127/236 (53%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGE--PPKLSDLDSA-VPVRIRVE 612
FT + +T+D R+ +L + S+ S+ +++VVWN PP+ S VP+++
Sbjct: 456 FTAIVLTYD-RVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKIRVPLKVVRT 514
Query: 613 KQNSLNNRFKLDPLIKTRGVLELDDDI-MMTCDDIERGFQVWRQHPDRIVGFYPRLVNGS 671
+N L+NRF I+T VL +DDDI M+T D+++ G++VWR+ PDR+VG YP ++
Sbjct: 515 AENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVG-YPGRLHLW 573
Query: 672 PLRYRGEKYARRHKG-YNMILTGAAFVDSQIAFNRYWSEQAKAG-REFVDKFFNCEDVLL 729
KY +M+LTGAAF FN ++ + + +VD NCED+ +
Sbjct: 574 DHEMNKWKYESEWTNEVSMVLTGAAFYHKY--FNYLYTYKMPGDIKNWVDAHMNCEDIAM 631
Query: 730 NYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGS 785
N+L AN + K V V P + + + Q H +RSEC+ KFA ++G+
Sbjct: 632 NFLVANVTG-KAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGT 686
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.4.1.224 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 802 | |||
| pfam09258 | 244 | pfam09258, Glyco_transf_64, Glycosyl transferase f | 3e-73 | |
| cd08994 | 291 | cd08994, GH43_like_2, Glycosyl hydrolase 43-like f | 0.004 |
| >gnl|CDD|220155 pfam09258, Glyco_transf_64, Glycosyl transferase family 64 domain | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-73
Identities = 85/236 (36%), Positives = 133/236 (56%), Gaps = 15/236 (6%)
Query: 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWN-KGEPPKLSDLDS-AVPVRIRVEK 613
FT + T+ +R+ L+ + HY+ + +IVV+WN PP+LS S AVP+ + K
Sbjct: 1 FTAVINTYYSRIDLLRKLLNHYAGSPHLAKIVVLWNNPKPPPELSKWPSPAVPLTVIRTK 60
Query: 614 QNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPL 673
+NSLNNRF P I+T VL LDDDI+++ D+++ F VW+ PDRIVGF PR
Sbjct: 61 RNSLNNRFLPYPEIETDAVLSLDDDILLSTDELDFAFSVWQSFPDRIVGFPPRSHFWDLS 120
Query: 674 RYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSE-----QAKAGREFVDKFFNCEDVL 728
+ R + Y+M+LTGAAF ++RY+ K+ R+ VD+ NCED+L
Sbjct: 121 KGRWGYTSEWTNDYSMVLTGAAF------YHRYYLYLYTHSLPKSIRDLVDETRNCEDIL 174
Query: 729 LNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYG 784
+N+L AN + + V + V +S + H+ +RS+C+ KF++++G
Sbjct: 175 MNFLVANVTGKPPI-KVTSRKQYKEGRNGKVGLSSDPG-HFLQRSKCINKFSKIFG 228
|
Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. Length = 244 |
| >gnl|CDD|185735 cd08994, GH43_like_2, Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 292 FMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGG 351
DG Y L + T N + + + SP GP+ P + +
Sbjct: 151 VTRRPDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTED-- 208
Query: 352 RPFVY--DGNLYRVGQDCAESYGRRVR 376
PFV+ G + + +D
Sbjct: 209 -PFVWYDKGQFHMIVKDMLGYVTGEKG 234
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 802 | |||
| KOG1022 | 691 | consensus Acetylglucosaminyltransferase EXT2/exost | 100.0 | |
| KOG2264 | 907 | consensus Exostosin EXT1L [Signal transduction mec | 100.0 | |
| PF09258 | 247 | Glyco_transf_64: Glycosyl transferase family 64 do | 100.0 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 99.75 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 99.67 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 99.64 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 99.63 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 99.63 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 99.62 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 99.61 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 99.55 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 99.54 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 99.54 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 99.53 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 99.5 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 99.49 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 99.49 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 99.46 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 99.46 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 99.42 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 99.42 | |
| cd08988 | 279 | GH43_ABN Glycosyl hydrolase family 43. This glycos | 99.4 | |
| cd08982 | 295 | GH43_3 Glycosyl hydrolase family 43. This glycosyl | 99.37 | |
| cd09003 | 311 | GH43_AXH_1 Glycosyl hydrolase family 43. This glyc | 99.36 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 99.34 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 99.34 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 99.3 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 99.3 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 99.3 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 99.28 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 99.28 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 99.22 | |
| cd09003 | 311 | GH43_AXH_1 Glycosyl hydrolase family 43. This glyc | 99.21 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 99.19 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 99.19 | |
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 99.19 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 99.18 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 99.16 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 99.16 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 99.15 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 99.12 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 99.11 | |
| cd08988 | 279 | GH43_ABN Glycosyl hydrolase family 43. This glycos | 99.09 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 99.09 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 99.04 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 99.03 | |
| cd08987 | 303 | GH62 Glycosyl hydrolase family 62, characterized a | 98.94 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 98.92 | |
| cd08987 | 303 | GH62 Glycosyl hydrolase family 62, characterized a | 98.9 | |
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 98.87 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 98.85 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 98.82 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 98.68 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 98.67 | |
| COG3507 | 549 | XynB Beta-xylosidase [Carbohydrate transport and m | 98.63 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 98.61 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 98.52 | |
| cd08982 | 295 | GH43_3 Glycosyl hydrolase family 43. This glycosyl | 98.51 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 98.51 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 98.41 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 98.4 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 98.4 | |
| COG3507 | 549 | XynB Beta-xylosidase [Carbohydrate transport and m | 98.29 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 98.24 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 98.02 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 98.01 | |
| PF02435 | 428 | Glyco_hydro_68: Levansucrase/Invertase; InterPro: | 97.78 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 97.7 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 97.68 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 97.63 | |
| COG3940 | 324 | Predicted beta-xylosidase [General function predic | 97.6 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 97.41 | |
| COG3940 | 324 | Predicted beta-xylosidase [General function predic | 97.38 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 97.22 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 97.06 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 96.49 | |
| cd00260 | 351 | Sialidase Sialidases or neuraminidases function to | 96.38 | |
| PF13810 | 316 | DUF4185: Domain of unknown function (DUF4185) | 96.23 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 96.18 | |
| COG2152 | 314 | Predicted glycosylase [Carbohydrate transport and | 95.68 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 95.5 | |
| cd00260 | 351 | Sialidase Sialidases or neuraminidases function to | 95.48 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 95.37 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 94.75 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 94.22 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 93.84 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 93.61 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 93.55 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 93.47 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 93.44 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 92.93 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 92.76 | |
| PF13859 | 310 | BNR_3: BNR repeat-like domain; PDB: 3B69_A. | 92.55 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 92.44 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 92.32 | |
| PF13859 | 310 | BNR_3: BNR repeat-like domain; PDB: 3B69_A. | 92.16 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 92.15 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 92.01 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 91.85 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 91.73 | |
| KOG0228 | 571 | consensus Beta-fructofuranosidase (invertase) [Car | 91.61 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 91.36 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 91.27 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 91.26 | |
| PF02435 | 428 | Glyco_hydro_68: Levansucrase/Invertase; InterPro: | 90.69 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 90.38 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 90.16 | |
| COG2152 | 314 | Predicted glycosylase [Carbohydrate transport and | 89.91 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 89.75 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 89.07 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 87.73 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 87.69 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 86.97 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 86.73 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 84.74 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 84.09 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 84.07 | |
| PLN02193 | 470 | nitrile-specifier protein | 83.94 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 82.95 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 81.88 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 81.18 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 81.14 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 80.71 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 80.71 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 80.47 |
| >KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-127 Score=1047.18 Aligned_cols=676 Identities=45% Similarity=0.716 Sum_probs=615.6
Q ss_pred HHHHHHHHHHHhhheeecCCcccc---CCCCCCCcccCCCCCeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeec
Q 045656 98 CFVVYVFVGFLYGWLALKKPYTVA---AGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMT 174 (802)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~c~~~~~~~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt 174 (802)
|+.+|++|+..+||..+ .|-.|. +...+.+|+.+++| +||.+++++||+++|+|+.+ .+.+||++||++|
T Consensus 1 ~~~~~~fv~~~~A~~~~-~p~~hr~~~vt~~slv~~~l~ag--f~~w~~s~sp~~~~~~ekR~----i~d~~~v~~pa~~ 73 (691)
T KOG1022|consen 1 CFGFYAFVAATYAWFVF-PPHIHRTDHVTSSSLVCRELNAG--FIGWFYSDSPFSLKPIEKRN----ISDAWPVTNPAIT 73 (691)
T ss_pred Cccceeeeeccceeeec-CCccceeeeechhhhhhhhhccc--ceeeecCCCCcCCCcccccc----cccCccccccccC
Confidence 46789999999999766 777766 55778889999999 99999999999999999855 5689999999999
Q ss_pred cccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEE
Q 045656 175 CASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIY 254 (802)
Q Consensus 175 ~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iY 254 (802)
|+.-+ |-++.|+||||.+.+. +|+|.+-+....|+|.-+.|.|.+.||+..++.|.|.||+|+||+|..+++.|
T Consensus 74 p~~e~--g~~sc~~~dcf~~y~c----~~~~~KvyIy~l~~~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~acl 147 (691)
T KOG1022|consen 74 PASET--GLPSCFLADCFLYYQC----LFFETKVYIYMLGDIVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACL 147 (691)
T ss_pred ccccc--CCccceehhhhhhhhc----cccccceeEEehhhhhhhhcccccccccHHHHHHHHHHHhccceecCCCceEE
Confidence 99888 5688999999999777 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 255 MMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
|+||+..-++. |+.|+++++.+.....+.+...|.|-+||-+++...+++-++.+..++++.+++|.|+.|+
T Consensus 148 f~Ps~d~lnQn--------~l~~kl~~~ala~l~~wdrg~nH~~fnmLpGg~p~yntaldv~~d~a~~~gggf~tW~yr~ 219 (691)
T KOG1022|consen 148 FMPSSDELNQN--------PLSWKLEKVALAKLLVWDRGVNHEGFNMLPGGDPTYNTALDVGQDEAWYSGGGFGTWKYRK 219 (691)
T ss_pred EecchhhhccC--------cchHHHHHHHHhcccchhcccceeeEeeccCCCCCccccccCCcceeEEecCCcCcccccC
Confidence 99998766554 8899999998888999999999999999999998777877888999999999999999999
Q ss_pred CCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec-------cccCCCCCCcccccc
Q 045656 335 KNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE-------GRNAWNGARYHHLDA 407 (802)
Q Consensus 335 ~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~-------~~~~w~~~~~Hhld~ 407 (802)
+|||.... ++.+++|+.|..+|..||+.|+|...||..++.-.++-+.+.+++|.+ ....| +.+-||.|+
T Consensus 220 g~dv~ipv--~Sp~~v~~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r-~~~qhH~~~ 296 (691)
T KOG1022|consen 220 GNDVYIPV--RSPGNVGRAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSR-GVRQHHFDV 296 (691)
T ss_pred CCcccccc--ccccccCccccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhcccccccc-chhhccccc
Confidence 99998864 568899999999999999999999999999999999888998888877 55666 788999999
Q ss_pred ccCCCCCeEEEEeCcccCCCCcchhhhhhHHHHHHHHHHHHHHHHhhcceeeeecccccc-ccCCCCCCccccccccccc
Q 045656 408 QQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIPLNWCA-QYSGKRSDSLLTWERESML 486 (802)
Q Consensus 408 ~~l~~g~~i~vvDG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 486 (802)
.+...++.+.+.||+|+.+|+..++.+||++..+.++++.+.++.++|.+.|.+|.-||+ .+.++.-+.|..++.+...
T Consensus 297 ~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~ 376 (691)
T KOG1022|consen 297 KYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGIC 376 (691)
T ss_pred ccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999 4466778889999998889
Q ss_pred chhhhhhccccccccccccccccCCcccchhhHHHHHHHhhheeeeeeeeeeCCCCCCcccccCCCCCceEEEEEecccC
Q 045656 487 CSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDAR 566 (802)
Q Consensus 487 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~g~~~qFTvvI~Ty~~R 566 (802)
+-+.||..+++||.....+.....+++++...+-++.....+.. ++.+.+++|+++.++.+.+++.++||++|+||+ |
T Consensus 377 sl~~r~~~~rl~rf~~~~~~~l~~~~~i~~~llp~v~~s~~~w~-~~~~~~~s~s~~~~~~~ik~~~qgFTlim~TYd-R 454 (691)
T KOG1022|consen 377 SLQLRRIGSRLNRFPPFKRGFLLLLSSIGKRLLPVVAISSRLWN-VGVRYIYSGSNPLFLPPIKGHSQGFTLIMLTYD-R 454 (691)
T ss_pred hhhhhhhhhhHhhcchHHHHHHHHHHHHhhhhhheeeecccccc-ccceecccCCCccccCCCCCcccceeeeeehHH-H
Confidence 99999999999999999998888777777765555444444445 889999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEeCC--CCCCCCCC-CCCCCcEEEEEcCCcCccccCccCCCCCccEEEEecCCcccCH
Q 045656 567 LWNLKMYVKHYSRCSSVKEIVVVWNK--GEPPKLSD-LDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTC 643 (802)
Q Consensus 567 ~~~L~~~v~hya~~p~v~kIvVVWn~--~~pP~~~~-~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLslDDDv~l~~ 643 (802)
.++|+++|+||++||+|+||+||||| .+||+..+ ....|||+|+++++|||||||.|+++|||+|||++|||++++|
T Consensus 455 ~d~L~k~v~~ys~vPsL~kIlVVWNnq~k~PP~es~~~~~~VPlr~r~qkeNsLnNRF~~~peieT~AVL~IDDDIim~~ 534 (691)
T KOG1022|consen 455 VDLLKKLVKHYSRVPSLKKILVVWNNQGKNPPPESLEPDIAVPLRFRQQKENSLNNRFEPYPEIETEAVLEIDDDIIMPC 534 (691)
T ss_pred HHHHHHHHHHHhhCCCcceEEEEecCCCCCCChhhccccCCccEEEEehhhhhhhcccccCcccccceeEEecCceeeec
Confidence 99999999999999999999999998 45555543 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceeecccccccCCCCCccccee-cccCcccceeeccceeeehhhhhhhccchhHHHHHHhhccCC
Q 045656 644 DDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKY-ARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFF 722 (802)
Q Consensus 644 deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y-~~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p~~iR~~VDe~~ 722 (802)
|||+|||+||||||||||||+||.|.++. .|..|+| ++|+++||||||||||+|++| +++|++.||+.+|++||+++
T Consensus 535 ddldFgf~VWrefPD~lVGF~pR~H~~t~-s~~k~~y~sewt~qySMVLtGAAFfhk~y-~~lYt~~mPa~ir~~vDe~~ 612 (691)
T KOG1022|consen 535 DDLDFGFEVWREFPDRLVGFVPRFHVWTM-SYSKWKYESEWTNQYSMVLTGAAFFHKKY-LDLYTSDMPADIRVFVDEHM 612 (691)
T ss_pred chhHHHHHHHHhCccceeccCcceeeccc-ccchhhheeecCCceEEEEechhHHHHHH-HHHhhhcccchHHHhhhccc
Confidence 99999999999999999999999998664 3444555 459999999999999999976 88999999999999999999
Q ss_pred CchhhHHHHHHHHhhCCCccccccCceecccCCcccccccCCCCchhhHHHHHHHHHHHHhCCCCceeeeecccCCCCCC
Q 045656 723 NCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802 (802)
Q Consensus 723 NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg~~iS~~~~~H~~~Rs~Cln~F~~~fG~mPL~~~~f~~~~~~~~~ 802 (802)
|||||||||||||+||+++|+ ++|+..++++.++|+..++++.+|+.+|++|||+|+++||.|||+.++|+.+..|||.
T Consensus 613 NCEDIAMNFLiANatg~~aI~-Vkp~~~~~~~~~sg~~gls~~~~H~~kRS~CInrFv~iyGsMPLr~~e~~a~~~~~~~ 691 (691)
T KOG1022|consen 613 NCEDIAMNFLIANATGKPAIK-VKPRKKFKCPECSGVAGLSNDNQHMRKRSKCINRFVDIYGSMPLRYVEFRADPVGFDD 691 (691)
T ss_pred CHHHHHHHHHhhhccCCCceE-EeCcccccCcccccceeeccchHHHHHHHHHHHHHHHHhcCCceeEEEeeeccccCCC
Confidence 999999999999999999877 4577778999999987777789999999999999999999999999999999999983
|
|
| >KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-79 Score=669.23 Aligned_cols=326 Identities=28% Similarity=0.381 Sum_probs=294.1
Q ss_pred eeeccccccccCCC--CCCcccccccccccchhhhhhccccccccccccccccCCcccchhhHHHHHHHhhhee------
Q 045656 459 CIIPLNWCAQYSGK--RSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALT------ 530 (802)
Q Consensus 459 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------ 530 (802)
++.|...+++.... .+..|+++|+ ||.|++++| |++-..++.+..||.|..++|+++.+++++.++
T Consensus 545 sf~p~gsdpnv~~n~d~e~~lgp~Ep-py~Sp~y~r-----NfT~~~~~~y~~WN~~~~Pfyl~p~lpfdp~LPsEAkF~ 618 (907)
T KOG2264|consen 545 SFAPKGSDPNVQANFDDEYLLGPLEP-PYESPSYAR-----NFTEFQLYSYDFWNIIMSPFYLKPFLPFDPELPSEAKFF 618 (907)
T ss_pred cCCcCCCCCCcccCCCcccccCCCCC-CCCCchHhh-----hhhhhhhHHHHHhhhcCCccccCccCCCCccCcchhhhh
Confidence 45666665543222 5778999999 999999999 999999999999999999999999999999994
Q ss_pred --eeeeeee---eCCCCCCcccccCCC--CCceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC--CC
Q 045656 531 --CTGVKFI---YGGNGADEAYMWKGH--YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS--DL 601 (802)
Q Consensus 531 --~~~~~~~---~gg~g~~~~~~~~g~--~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~--~~ 601 (802)
.+||||| .||+|+|++.+++|+ ++||||||+||+ |..-|.-.+..+...|+++|||||||++++|+.+ |.
T Consensus 619 gs~tGFRPIg~g~gGsGkEF~~aLGGN~pREQFTvVmLTYE-Re~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WP 697 (907)
T KOG2264|consen 619 GSKTGFRPIGPGAGGSGKEFSKALGGNRPREQFTVVMLTYE-REAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWP 697 (907)
T ss_pred ccCcCcccCCCCCCCchHHHHHHhcCCCccceEEEEEEEeh-HHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCc
Confidence 7899999 779999999999997 599999999999 7888988999999999999999999999988775 45
Q ss_pred CCCCcEEEEEcCCcCccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCCccccee-
Q 045656 602 DSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKY- 680 (802)
Q Consensus 602 ~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y- 680 (802)
+.+|||.|++.++|||||||+|++.|+|+||||+|||+.+.+|||.|||+||||++||||||++|.|.|+... .+|.|
T Consensus 698 digvPv~viR~~~NsLNNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFPgRyHAwd~p~-~sw~YN 776 (907)
T KOG2264|consen 698 DIGVPVEVIRVAENSLNNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFPGRYHAWDGPH-DSWFYN 776 (907)
T ss_pred CCCCceEEEEcccccccccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCCcccccccCCC-cceeec
Confidence 7799999999999999999999999999999999999999999999999999999999999999999887532 23444
Q ss_pred cccCcccceeeccceeeehhhhhhhccchhHHHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCCccccc
Q 045656 681 ARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVA 760 (802)
Q Consensus 681 ~~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg~~ 760 (802)
+..+++.|||||||||+||||+ +.|+..||++||++||+.+|||||||||||||+|+||||+ ++.+|.+.|+++. ++
T Consensus 777 SNysCelSMvLTGAAF~HKyYl-ylYtY~mPqaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiK-vTSRWTfrCPgCp-~s 853 (907)
T KOG2264|consen 777 SNYSCELSMVLTGAAFIHKYYL-YLYTYEMPQAIRDHVDEYKNCEDIAMNFLVSHITRKPPIK-VTSRWTFRCPGCP-ES 853 (907)
T ss_pred CCcceEEeeeehhhHHHHHHHH-HhhhhhchHHHHHHHHhhcCHHHHHHHHHHHHhccCCCce-eeceeEEeCCCCc-hh
Confidence 3458999999999999999984 5799999999999999999999999999999999999997 6789999999975 46
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhCCCCceeeeeccc
Q 045656 761 ISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGR 796 (802)
Q Consensus 761 iS~~~~~H~~~Rs~Cln~F~~~fG~mPL~~~~f~~~ 796 (802)
+|.+ ..||++|++|||.|++.||||||..+|||..
T Consensus 854 Ls~d-dtHF~eRHkCinfF~kvyGY~PLl~tQfRaD 888 (907)
T KOG2264|consen 854 LSKD-DTHFEERHKCINFFTKVYGYNPLLFTQFRAD 888 (907)
T ss_pred hccC-CchHHHHHHHHHHHHHHhccChhhhhhhhhh
Confidence 7764 7899999999999999999999999999864
|
|
| >PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=581.47 Aligned_cols=235 Identities=41% Similarity=0.676 Sum_probs=183.1
Q ss_pred eEEEEEe-cccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC--CCCCCCcEEEEEcCCcCccccCccCCCCCccEE
Q 045656 556 FTMLTMT-FDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS--DLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGV 632 (802)
Q Consensus 556 FTvvI~T-y~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~--~~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AV 632 (802)
|||||+| |+ |...|+++|+||++||+|+||+||||++++||+. +...++||+|+++++|||||||+|+++|+||||
T Consensus 1 fTvvi~t~~~-R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~T~AV 79 (247)
T PF09258_consen 1 FTVVINTSYK-RSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIETDAV 79 (247)
T ss_dssp EEEEEEE-SS--HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT--SSEE
T ss_pred CEEEEEeccc-chHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccccCcceE
Confidence 8999999 77 8999999999999999999999999997777643 345579999999999999999999999999999
Q ss_pred EEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCCcccceec-ccCcccceeeccceeeehhhhhhhccchhH
Q 045656 633 LELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYA-RRHKGYNMILTGAAFVDSQIAFNRYWSEQA 711 (802)
Q Consensus 633 LslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y~-~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p 711 (802)
|++|||+.++++||||||++||+||||||||+||+|.+++.+.+ |.|. +++++||||||+|||+|++| +++|++.+|
T Consensus 80 l~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~-~~Y~~~~~~~ySmvLt~aaf~h~~y-l~~Y~~~~p 157 (247)
T PF09258_consen 80 LSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGR-WKYTSEWSNEYSMVLTGAAFYHRYY-LELYTHWLP 157 (247)
T ss_dssp EEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTE-EEEE-SSS--BSEE-TTEEEEETHH-HHHHHT-S-
T ss_pred EEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccc-cccccCCCCcchhhhhhhHhhcchH-HHHHhcCcH
Confidence 99999999999999999999999999999999999976653333 4554 78999999999999999998 778999999
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCCccc---ccccCCCCchhhHHHHHHHHHHHHhCCCCc
Q 045656 712 KAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSG---VAISRNTQVHYHKRSECLRKFAEMYGSFAG 788 (802)
Q Consensus 712 ~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg---~~iS~~~~~H~~~Rs~Cln~F~~~fG~mPL 788 (802)
+++|++||+++||||||||||||++||+|||+ +.+.+.+++.+..+ .+||. +++|+++|++|||+|+++||+|||
T Consensus 158 ~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~-v~~~~~~~~~~~~~~~~~gls~-~~~H~~~R~~Cln~f~~~fG~mPL 235 (247)
T PF09258_consen 158 ASIREYVDEHFNCEDIAMNFLVSNLTGKPPIK-VTSRKKFKCSKCSGGGSSGLSS-RPGHFKQRSKCLNRFAEIFGYMPL 235 (247)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE---SSEEE-TTSSSS------CCC-STCHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhccCCCCc-ccccceeeccccccccccCCCC-CchhHHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999999987 45777776665443 56776 468999999999999999999999
Q ss_pred eeeeecc
Q 045656 789 RKWEFGG 795 (802)
Q Consensus 789 ~~~~f~~ 795 (802)
++++++.
T Consensus 236 ~~s~~r~ 242 (247)
T PF09258_consen 236 VYSQFRA 242 (247)
T ss_dssp --B-EEE
T ss_pred eeEeEEe
Confidence 9999886
|
They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B. |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=169.84 Aligned_cols=240 Identities=23% Similarity=0.309 Sum_probs=166.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC-----------
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED----------- 238 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~----------- 238 (802)
|||++ .++|||++++.++++|+|.+.... ...|.+++|+| +.+|+..+.+|+.+
T Consensus 1 NPv~~-----------~~~~DP~i~~~~~~yy~~~t~~~~---~~~i~~~~S~D-l~~W~~~g~~~~~~~~~~~~~~~~~ 65 (288)
T cd09000 1 NPILP-----------GFYPDPSICRVGDDYYLVTSSFEY---FPGVPIFHSKD-LVNWELIGHALTRPSQLDLDGLPDS 65 (288)
T ss_pred CCcCC-----------CCCCCCCEEEECCEEEEEECCccc---CCCceEEECCC-cCCcEEcccccCCcccccccCCCCC
Confidence 78877 378999999999999998665432 23599999887 89999999888532
Q ss_pred CceeeeEEEEeCCEEEEEeCCCC---CCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCCC-CCC
Q 045656 239 WHLSFPYVFDYHGQIYMMPESRA---KGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSGF-GTT 313 (802)
Q Consensus 239 ~HLSyP~VF~~dG~iYMiPEss~---sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~~-g~~ 313 (802)
..+|+|.|+..+|++||+..... ...+.+..+.+....|+ ++.++....+||++|+. ||++||++...... +..
T Consensus 66 ~~~WAP~v~~~~g~yy~yy~~~~~~~~~~~~v~~s~~p~gpw~-~~~~~~~~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~ 144 (288)
T cd09000 66 GGIWAPTIRYHDGTFYLITTNVDGMKDGGNFIVTADDPAGPWS-DPVWLDSGGIDPSLFFDDDGKVYLVGNGWDERRGYN 144 (288)
T ss_pred CceEcceEEEECCEEEEEEEecCCCCCCceEEEEeCCCCCCCc-CCEecCCCccCCceeEcCCCCEEEEecccCCccccC
Confidence 24899999999999999976544 45677777776656787 34445557899999999 89999987542110 001
Q ss_pred CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEe-
Q 045656 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKEL- 391 (802)
Q Consensus 314 ~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~- 391 (802)
....|.+...+.........+ .++.... ....+.|..+|+.+|++|++...|...+...+.+.+.++++ +++.+..
T Consensus 145 ~~~~i~~~~l~~~~~~~~~~~-~~~~~~~-~~~~~Egp~v~k~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~~~~~ 222 (288)
T cd09000 145 GHGGIWLQEIDLETGKLLGEP-KVIWNGT-GGRWPEGPHLYKRDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEPAPNN 222 (288)
T ss_pred CCCcEEEEEEccccCCCCCCc-EEEEeCC-CCCCcccCeEEEECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCccCCCC
Confidence 123566655443222111111 1222221 12468999999999999999987766677789999998886 5544321
Q ss_pred c---cc--cCCCCCCccccccccCCCCCeEEEEeCcccCCC
Q 045656 392 E---GR--NAWNGARYHHLDAQQLSSGEWIAVMDGDRALSG 427 (802)
Q Consensus 392 ~---~~--~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~~ 427 (802)
+ .. ..++-.+++|-++.+.++|+|++|+.+....++
T Consensus 223 ~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH~~~~~~~ 263 (288)
T cd09000 223 PILTNRDLPDSPIQATGHADLVQTPDGEWWAVFLATRPYGG 263 (288)
T ss_pred ceEEcCCCCCCcceeCCccceEECCCCCEEEEEEEEcCCCC
Confidence 1 11 234445788889999889999999998765443
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=157.64 Aligned_cols=226 Identities=17% Similarity=0.242 Sum_probs=155.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEE--CCEEEEEEEeeeccCCC--------ceEEEEEEeCCCCCceEeeeeecC
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQ--GNDLYLFYETKNSITMQ--------GDIGVAKSVDKGATWQQLGIALDE 237 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~--~g~~ylF~E~~~~~~~~--------G~I~va~S~D~g~tw~~~gvvLde 237 (802)
++|||+. . +|||+++.. ++++|||||.++..... ..|++++|.|.+.+|++.+.++..
T Consensus 3 ~~~~~~~-----------g-~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~ 70 (294)
T cd08984 3 FRDPVYD-----------G-AADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGL 70 (294)
T ss_pred ccCCCCC-----------C-CCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccC
Confidence 5799977 2 699999976 77999999976543222 379999987768999999876533
Q ss_pred -----CCceeeeEEEEeCCEEEEEe----CC----CCCCeeEEEEeccCCcCceeeeec-cC-CCccCCEEEEEC-CEEE
Q 045656 238 -----DWHLSFPYVFDYHGQIYMMP----ES----RAKGEVRLYRAVNFPLEWKLEKII-MK-KPLVDPFMINHD-GQYW 301 (802)
Q Consensus 238 -----~~HLSyP~VF~~dG~iYMiP----Es----s~sg~l~LYra~~FP~~We~~~~L-l~-~~~vDatI~~~d-G~ww 301 (802)
..++|+|.|+..+|++||+- .. .....+.+..+.++ ..|+.+..+ ++ ...+|+++|+.+ |+||
T Consensus 71 ~~~~~~~~~WAP~v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-~~w~~~~~~~~~~~~~iD~~vf~~~dg~~y 149 (294)
T cd08984 71 EFECGRNTFWAPEVVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-WDWTFVGRVDLDSDRVIDACVFKLPDGRWR 149 (294)
T ss_pred CCCCcccceeCceEEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCc-CcceECCccccCCCCcEEeEEEEeCCCEEE
Confidence 35699999999999999993 21 22345666667775 679876653 44 358999999986 9999
Q ss_pred EEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEec
Q 045656 302 LFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 302 LF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
||++... ....+.++.+++ +..|++.. +++... .-.|..+|+.+|++|++..+ .+ ++.+++.+
T Consensus 150 l~y~~~~-----~~~~~~~a~s~D-~~~w~~~~--~~i~~~----~~EgP~v~k~~g~yym~~~~---~~--g~~~~~S~ 212 (294)
T cd08984 150 MWYKDER-----RGSTTYAADSED-LYHWTVEG--PVLGDR----PHEGPNVFRWKGYYWMIIDE---WK--GLGVYRSK 212 (294)
T ss_pred EEEECCC-----CCeEEEEEECCC-CCEEEeCC--ccccCC----CCCCCCeeEECCEEEEEEcC---Cc--eEEEEECC
Confidence 9998631 122445555555 45798754 444421 34678899999999998633 23 48899999
Q ss_pred cCCccceEEec-cc-cCCCC---CCccccccccCCCCCeEEEEeCcccC
Q 045656 382 ILTKNEYKELE-GR-NAWNG---ARYHHLDAQQLSSGEWIAVMDGDRAL 425 (802)
Q Consensus 382 ~Lt~~~y~E~~-~~-~~w~~---~~~Hhld~~~l~~g~~i~vvDG~r~~ 425 (802)
++.+|+++... .. ..+.. .+=| -++-..+ ++|+.++=....+
T Consensus 213 D~~~W~~~~~~l~~~~~~~~~~~~~~H-~~i~~~~-~~~y~~Yh~~~~~ 259 (294)
T cd08984 213 DAENWERQGGILLKPGTRPDDGAKGRH-ADVVVTG-DRAYIFYFTHPGR 259 (294)
T ss_pred ChhhcEECCeeeccCCCCccccccccC-CcEEEeC-CEEEEEEEecCCC
Confidence 99999887655 11 11211 2223 3665444 4677776544443
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=153.21 Aligned_cols=194 Identities=22% Similarity=0.323 Sum_probs=131.5
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-----------C
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-----------D 238 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-----------~ 238 (802)
||||+ .++|||++++.++++|+|.+.... ...|.+.+|+| +.+|+..+.+++. .
T Consensus 1 NPvi~-----------~~~~DP~ii~~~~~yY~~~t~~~~---~~g~~~~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~ 65 (269)
T cd08989 1 NPILK-----------GDNPDPSIIRAGDDYYMASSTFEW---FPGVQIHHSTD-LVNWHLIGHPLDRLEDLDMKGNPYS 65 (269)
T ss_pred CCcCC-----------CCCCCCcEEEECCeEEEEECcccc---CCCcEEEECCc-cCCCEEccccccCccccccccCCCC
Confidence 88987 478999999999999999987432 23588999887 8999999988764 2
Q ss_pred CceeeeEEEEeCCEEEEEeCCC---CCCeeEEEEeccCCcCceee---------------------------------e-
Q 045656 239 WHLSFPYVFDYHGQIYMMPESR---AKGEVRLYRAVNFPLEWKLE---------------------------------K- 281 (802)
Q Consensus 239 ~HLSyP~VF~~dG~iYMiPEss---~sg~l~LYra~~FP~~We~~---------------------------------~- 281 (802)
.++|+|.|+.++|++||+--.+ ...++-+..+.+.-..|+.. +
T Consensus 66 ~~~WAP~v~~~~G~yy~yy~~~~~~~~~~i~va~sd~~~Gpw~~~~~~~~~~IDp~~f~D~dG~~Yl~~~~~~~i~l~~l 145 (269)
T cd08989 66 GGIWAPCLSYYDGKFWLIYTAVKVWKDCHNYLFTAEDITGPWSRPIFLNYGGFDPSLFHDDDGKKYLINMGWSGIRLQEY 145 (269)
T ss_pred CcEEcceEEEECCEEEEEEeccccCCCceEEEEEECCCCCCCcCCEECCCCcccCceEEcCCCCEEEEecCCCcEEEEEE
Confidence 3699999999999999983221 22334344442211122210 0
Q ss_pred -----ecc---------C----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCC-
Q 045656 282 -----IIM---------K----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGD- 342 (802)
Q Consensus 282 -----~Ll---------~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~- 342 (802)
.++ + ...+.|.+++++|+||||+|.. ..+ ......+++|++++|||++++.|||+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~-~~~--~~~~~~~~rs~~~~GP~~~~~~~pl~~~~~ 222 (269)
T cd08989 146 SPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEG-GTG--YIHEETIARSDKIHGPYEGRPDNPLVLWDT 222 (269)
T ss_pred ChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeC-CCC--CCeeEEEEEECCCCCCCCcCCCCcceeecC
Confidence 001 1 1268999999999999999863 222 23357789999999999999999975421
Q ss_pred -C-CCCcccCCccEEE-CCeEEEEcccCCC---CCCceEEEEEec
Q 045656 343 -K-SLGARNGGRPFVY-DGNLYRVGQDCAE---SYGRRVRTFKVE 381 (802)
Q Consensus 343 -~-~~~aR~GG~vF~~-dGkLyRp~QdC~~---~YG~~L~l~~It 381 (802)
. ...+-.++.+|.. ||+.|.+...... ..||.+.|.+|+
T Consensus 223 ~~~~~~g~GH~s~v~~~~G~~~~~~h~~~~~~~~~gR~~~l~~i~ 267 (269)
T cd08989 223 PGNPLQKCGHASLVETPDGKWYLAHLTGRPGFCPLGRETALQPIE 267 (269)
T ss_pred CCCCcccCCCcCeEECcCCCEEEEEEeeCCCCCccCcceEEEEEE
Confidence 1 1222344666765 8998876654333 457777777763
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=151.96 Aligned_cols=198 Identities=21% Similarity=0.292 Sum_probs=135.5
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-CCceeeeEE
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-DWHLSFPYV 246 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-~~HLSyP~V 246 (802)
++||||+ .++|||.+++.++++||+.+.+.. ...|.+.+|.| +.+|+..+.+|+. .-.+|+|.|
T Consensus 6 ~~nPv~~-----------~~~~DP~i~~~~~~yY~~~t~~~~---~~gi~i~~S~D-L~~W~~~g~~~~~~~~~~WAP~i 70 (280)
T cd09002 6 YRNPILA-----------GDYPDPSILRDGEDYYMTHSSFKY---TPGLVIWHSRD-LVNWTPVGPALPEYEGDVWAPDL 70 (280)
T ss_pred EeCCccC-----------CCCCCCEEEEECCEEEEEEcchhc---CCCEEEEECCC-cCCceEccccccCCCCCEEcCee
Confidence 6899988 356999999999999998876432 34699999887 8999999988865 456999999
Q ss_pred EEeCCEEEEEeCC---CCCCeeEEEEeccCCc-Ccee----------e------------------------e-------
Q 045656 247 FDYHGQIYMMPES---RAKGEVRLYRAVNFPL-EWKL----------E------------------------K------- 281 (802)
Q Consensus 247 F~~dG~iYMiPEs---s~sg~l~LYra~~FP~-~We~----------~------------------------~------- 281 (802)
++++|++||+--. .+..++-+..+. .|. .|+. + +
T Consensus 71 ~~~~gkyy~yys~~~~~~~~~~~va~ad-~p~Gpw~~~~~~~~~~~IDp~vf~DddG~~Yl~~~~~~~~~l~~d~~~~~g 149 (280)
T cd09002 71 CKYDGRYYIYFPAIPEGGNWTNMVIWAD-SPEGPWSKPIDLKIGGCIDPGHVVDEDGNRYLFLSGGDRVRLTADGLSTDG 149 (280)
T ss_pred EEECCEEEEEEEeecCCCCceEEEEEEC-CCCCCCcCCEecCCCCccCCceEEcCCCCEEEEECCeeEEEECccccEecC
Confidence 9999999999321 122333333332 221 1221 0 0
Q ss_pred --e-ccC-----------C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC--
Q 045656 282 --I-IMK-----------K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS-- 344 (802)
Q Consensus 282 --~-Ll~-----------~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~-- 344 (802)
+ +.. . .++.|.|++++|+||||+|.....+......+.+++|++|+|||++++.|||+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~ 229 (280)
T cd09002 150 KLEHVYDGWRYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQE 229 (280)
T ss_pred cCEEEecCcccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCC
Confidence 0 000 0 2699999999999999998632211111235678899999999999999999975321
Q ss_pred -CCcccCCccEEE-CCeEEEEcccCC---CCCCceEEEEEec
Q 045656 345 -LGARNGGRPFVY-DGNLYRVGQDCA---ESYGRRVRTFKVE 381 (802)
Q Consensus 345 -~~aR~GG~vF~~-dGkLyRp~QdC~---~~YG~~L~l~~It 381 (802)
..+-.++.+|.. +|+.|.+.-... ...||.+.|.+++
T Consensus 230 ~~~g~GH~~i~~~~~g~~~~vyH~~~~~~~~~gR~~~l~~l~ 271 (280)
T cd09002 230 PWWSKGHATLVDGPDGQWWMVYHAYEKGYLTLGRQTLLEPIE 271 (280)
T ss_pred CceeCCCCcEEECCCCCEEEEEEeecCCCCCCCcEEEEEEEE
Confidence 112234666765 788888765322 3568888888885
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=149.85 Aligned_cols=198 Identities=22% Similarity=0.358 Sum_probs=132.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------CCceee
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------DWHLSF 243 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------~~HLSy 243 (802)
|||+. .++|||++++.+|++|||++..........|.+++|.| +.+|+..+.+|.. ...+|.
T Consensus 1 NPv~~-----------g~~~DP~i~~~~g~yY~~~t~~~~~~~~~~~~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wA 68 (275)
T cd09004 1 NPILP-----------GWYADPEIRIFGGTYYIYPTSDGAGGEQTPFDVFSSKD-LVNWTKEGIILDMADVSWANRAAWA 68 (275)
T ss_pred CCcCC-----------CCCCCCCeEEECCEEEEEEeccCCCCCeeEEEEEECCC-CCCceECcccccccCCcccCCCcCC
Confidence 88987 47899999999999999998643221235688899877 8999999998863 246999
Q ss_pred eEEEEeCCEEEEE--------------eCC---------------------------CCCCeeEEEEe----------cc
Q 045656 244 PYVFDYHGQIYMM--------------PES---------------------------RAKGEVRLYRA----------VN 272 (802)
Q Consensus 244 P~VF~~dG~iYMi--------------PEs---------------------------s~sg~l~LYra----------~~ 272 (802)
|.|+.++|++||+ |+. ..+++..|+-. .+
T Consensus 69 P~v~~~~g~yy~yys~~~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~~~~~i~~l~~ 148 (275)
T cd09004 69 PSVIERNGKYYFYFSANGGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGGWGHCNVAKLNE 148 (275)
T ss_pred CeEEEECCEEEEEEEcCCcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEEcCcCCEEEEEECC
Confidence 9999999999998 210 01122222210 00
Q ss_pred CCcCceeeeec--cC--CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 273 FPLEWKLEKII--MK--KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 273 FP~~We~~~~L--l~--~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
-...|+.+... +. .-++.|.+++++|+||||+|... .. ..++.+.+++|++|+|||++... |++.+.......
T Consensus 149 d~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyl~ys~~~-~~-~~~Y~~~ya~s~~~~GP~~~~~~-~~~~~~~~~~~g 225 (275)
T cd09004 149 DMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGG-WT-DPDYHVAYAMADSPLGPFERPGN-IILQQDPGIATG 225 (275)
T ss_pred CcccccCcceeeeccCCCceecceEEEECCEEEEEEECCC-CC-CCCceEEEEEcCCCCCCcccCCc-EeeeCCCCCccc
Confidence 01112222212 22 13799999999999999999742 11 13568889999999999998764 555432222234
Q ss_pred cC-CccEEEC--CeEEEEcccCC----CCCCceEEEEEecc
Q 045656 349 NG-GRPFVYD--GNLYRVGQDCA----ESYGRRVRTFKVEI 382 (802)
Q Consensus 349 ~G-G~vF~~d--GkLyRp~QdC~----~~YG~~L~l~~It~ 382 (802)
+| +.+|... |+.|....... ...+|.+.|.+++=
T Consensus 226 ~gH~~~~~~~~~~~~~~~yh~~~~~~~~~~~R~~~i~~~~~ 266 (275)
T cd09004 226 PGHHSVVNVPGTDEWYIVYHRRPLPETDGNHRQTCIDRMEF 266 (275)
T ss_pred CCCCEEEEeCCCCeEEEEEeCCCCCCCCCceeeEEEEEEEE
Confidence 44 4556554 88888777653 25688888888853
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-14 Score=149.84 Aligned_cols=195 Identities=24% Similarity=0.292 Sum_probs=132.4
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCC-CCCceEeeeeecCC-----CceeeeEEEEe-CCEEEEEe
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDK-GATWQQLGIALDED-----WHLSFPYVFDY-HGQIYMMP 257 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~-g~tw~~~gvvLde~-----~HLSyP~VF~~-dG~iYMiP 257 (802)
..++| |.++..+|++||||........+.+|++++|.+- ...|+..+++++.. ...+.|.||.+ ||++||+-
T Consensus 56 ~~~wA-P~v~~~~g~yyl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~ 134 (288)
T cd08998 56 GNLWA-PDVIYLNGKYYLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSF 134 (288)
T ss_pred CCccC-CeEEEECCEEEEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEe
Confidence 34566 9999999999999998665445678999998875 47899988877643 46889999998 88999997
Q ss_pred CCCCCCeeEEEEe---ccCCcCceeeee-ccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCCC
Q 045656 258 ESRAKGEVRLYRA---VNFPLEWKLEKI-IMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSPF 327 (802)
Q Consensus 258 Ess~sg~l~LYra---~~FP~~We~~~~-Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSpl 327 (802)
.+.. +.+.+-+. +..|..|..+.+ +.. ...++|.|++++|+||||+|..... +...++.+.+++|++|+
T Consensus 135 ~~~~-~~i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~ 213 (288)
T cd08998 135 GSFW-GGIFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSIT 213 (288)
T ss_pred eecc-CCEEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCC
Confidence 6532 23333333 234555532222 332 2489999999999999999863222 11245678899999999
Q ss_pred CCCeeCCCCCeeeCCC--------CCCcccC-CccEEE-CCeEEEEc--ccCCCCCCceEEEEEec
Q 045656 328 GPWKPHKKNPIYNGDK--------SLGARNG-GRPFVY-DGNLYRVG--QDCAESYGRRVRTFKVE 381 (802)
Q Consensus 328 GPW~~hp~NPI~~~~~--------~~~aR~G-G~vF~~-dGkLyRp~--QdC~~~YG~~L~l~~It 381 (802)
|||++.+.+|++.... .....+| +.+|+. +|+.|... ++.....++.+.+.+|+
T Consensus 214 GP~~~~~g~~~~~~~~~~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~~~~~~~~~r~~~i~~l~ 279 (288)
T cd08998 214 GPYVDRNGNDMLNGGGTLYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHYYDANDGGDHELRIRQLF 279 (288)
T ss_pred CCcCCCCCCchhhCCCcceeeccCCeEEcCCCCEEEECCCCCEEEEEEEEeCCCCCccEEEEEEEE
Confidence 9999888888765310 1112344 455655 56777644 33333445677777764
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=146.80 Aligned_cols=239 Identities=19% Similarity=0.177 Sum_probs=167.2
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCC-------c
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDW-------H 240 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~-------H 240 (802)
++|||+. .++|||++++.++++|||++..... ..|.+++|.| +.+|+..+.+|.... .
T Consensus 1 ~~NPv~~-----------~~~~DP~i~~~~~~yY~~~t~~~~~---~~i~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~ 65 (286)
T PF04616_consen 1 YTNPVID-----------GDYADPSIVRFGDGYYLYGTTDPEG---PGIPVWSSKD-LVNWTDAGNVLPPPPDWDWANNG 65 (286)
T ss_dssp EESSSBT-----------SSECSEEEEEETTEEEEEEEEBTCE---SBEEEEEESS-SSSEEEEEECESSTTTTSTTTSE
T ss_pred CCCCccC-----------CCCCCCEEEEECCEEEEEEEcCCCC---CeEEEEECCC-Ccccccceeeecccccccccccc
Confidence 4799987 4889999999999999999884322 5799999877 999999998885531 1
Q ss_pred e-eeeEEEEeCCEEEEEeC---CCCCCeeEEEEeccCCcCceeeeecc--CCCccCCEEEEEC-CEEEEEEeCCCCCCCC
Q 045656 241 L-SFPYVFDYHGQIYMMPE---SRAKGEVRLYRAVNFPLEWKLEKIIM--KKPLVDPFMINHD-GQYWLFGSDHSGFGTT 313 (802)
Q Consensus 241 L-SyP~VF~~dG~iYMiPE---ss~sg~l~LYra~~FP~~We~~~~Ll--~~~~vDatI~~~d-G~wwLF~S~~~~~g~~ 313 (802)
. |+|.|++++|++||+-- ......+.+.++.+.-..|+....+. ....+||++|+.+ |++||+++..... .
T Consensus 66 ~~WAP~i~~~~g~yy~y~~~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~--~ 143 (286)
T PF04616_consen 66 NIWAPEIHYINGKYYMYYSDSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNG--D 143 (286)
T ss_dssp TTEEEEEEEETTEEEEEEEEESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTT--S
T ss_pred cccCCeEEEcCCeEEEEEEccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCC--c
Confidence 2 89999999999999954 45556677888766435788765543 5679999999997 9999999874211 1
Q ss_pred CCCcEEEEEEcCCCCCCeeCCCCCeeeCC--CCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEe
Q 045656 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKEL 391 (802)
Q Consensus 314 ~n~~L~i~~AdSplGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~ 391 (802)
....+.+..-+.....+...+...+.... .......|..+|+.+|++|++.=.+.......+.+.+.++++. -|+.+
T Consensus 144 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~y~v~~~~s~~~~g-p~~~~ 222 (286)
T PF04616_consen 144 PGGGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSPYQVGYARSDSPLG-PWEWK 222 (286)
T ss_dssp SEEEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTTTEEEEEEESSTTS-GGEET
T ss_pred cceeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCCceEEEeeccCCCC-ceeec
Confidence 12345566656666655544433333321 1234678899999999999987655444447777788887754 24444
Q ss_pred cc-------ccCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 392 EG-------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 392 ~~-------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
.. .......+..|-.+-+-++|+|..++=+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~g~gH~~~~~~~~g~~~~~yh~~~~ 262 (286)
T PF04616_consen 223 KGNPILFSRDGENGVYGPGHGSVFKDPDGRWYIVYHARNP 262 (286)
T ss_dssp TTCBCEGTTBTTSSCEEEEEEEEEEETTSEEEEEEEEEET
T ss_pred cCCeEEEeeccCCccccCccCCEEECCCCCEEEEEeeccC
Confidence 31 2233335566667777778888888766665
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=150.63 Aligned_cols=194 Identities=20% Similarity=0.339 Sum_probs=134.6
Q ss_pred CCCCCCC---CCCeeccccccCCCCCCceeeCee-eEEECCEEEEEEEeeeccC---------------CCceEEEEEEe
Q 045656 162 DSAAWPV---ANPIMTCASVSSAGFPSNFVADPF-FYLQGNDLYLFYETKNSIT---------------MQGDIGVAKSV 222 (802)
Q Consensus 162 ~~~~w~~---~NPVlt~~~v~d~~~~~~F~ADPF-ll~~~g~~ylF~E~~~~~~---------------~~G~I~va~S~ 222 (802)
.+.+|+- .-|++..+ . ....+.+||+ ++..+|+|||+|....... ..-+|.+|+|.
T Consensus 13 ~~~~~f~~~~~~p~~~~~---~--e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~ 87 (349)
T cd08992 13 KGPEWFCEFRIYPKGGLG---Y--EEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSK 87 (349)
T ss_pred cCcHHHhhcccCcccccc---c--ccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECC
Confidence 3455654 45655422 1 1235789997 8899999999998532110 24579999987
Q ss_pred CCCCCceEeeeeecC-C------CceeeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCc-Cceeeee-cc--
Q 045656 223 DKGATWQQLGIALDE-D------WHLSFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPL-EWKLEKI-IM-- 284 (802)
Q Consensus 223 D~g~tw~~~gvvLde-~------~HLSyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~-~We~~~~-Ll-- 284 (802)
| +.+|+..+.+|.. + ..+++|.|++++|++||+-... ...++.+-.+.+ |. .|+.... ++
T Consensus 88 D-gv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdS-p~GpWtr~d~Pil~p 165 (349)
T cd08992 88 D-GWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADS-PYGPWTKSDEPILSP 165 (349)
T ss_pred C-CCCceECCccccCCCCCCccccceECcEEEEECCEEEEEEEecccccCCCCcceEEEEEECC-cccccccCCCcEecC
Confidence 7 8999999988853 1 3489999999999999996431 124566666644 44 4764321 11
Q ss_pred ----------------------C-CCccCCEEEEECCEEEEEEeCCCCCCC-----CCCCcEEEEEEcCCCCCCeeCCCC
Q 045656 285 ----------------------K-KPLVDPFMINHDGQYWLFGSDHSGFGT-----TQNGQLEIWYSSSPFGPWKPHKKN 336 (802)
Q Consensus 285 ----------------------~-~~~vDatI~~~dG~wwLF~S~~~~~g~-----~~n~~L~i~~AdSplGPW~~hp~N 336 (802)
+ ..++||.|++++|+|||||+.+. ++. ..+..+++++|++|+|||++++.|
T Consensus 166 ~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~~~~g~yyL~Y~G~~-~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~n 244 (349)
T cd08992 166 SNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLFPFNGKFYLYYKGEQ-MGEEMTMGGRETKWGVAIADDPEGPYVKSPYN 244 (349)
T ss_pred CcCCceeeccCceeEeccCCCcccCceECCEEEEECCEEEEEEEccc-cCcccccCCCCceEEEEEECCCCCCCEeCCCC
Confidence 1 14789999999999999998753 222 124479999999999999999999
Q ss_pred CeeeCCCCCCcccCCccEEECCeE-EEEcccCCC
Q 045656 337 PIYNGDKSLGARNGGRPFVYDGNL-YRVGQDCAE 369 (802)
Q Consensus 337 PI~~~~~~~~aR~GG~vF~~dGkL-yRp~QdC~~ 369 (802)
||+.... . .-++.++|.+ .+++-||-+
T Consensus 245 Pi~~~~~-----~-~~~~~~~~~~~~~~~~d~~~ 272 (349)
T cd08992 245 PITNSGH-----E-TCVWQYKGGIAAMLTTDGPE 272 (349)
T ss_pred cccCCCC-----c-eEEEecCCceEEEEeccCCC
Confidence 9986421 1 1345556677 888888754
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-13 Score=140.67 Aligned_cols=195 Identities=18% Similarity=0.242 Sum_probs=134.5
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeee----cCCCceeeeEEEEe-CCEEEEEeCCC
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIAL----DEDWHLSFPYVFDY-HGQIYMMPESR 260 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvL----de~~HLSyP~VF~~-dG~iYMiPEss 260 (802)
.++| |-++..+|++||||...+.......|++++++|....|+..+.++ +.......|.||.+ ||++||+=.+.
T Consensus 61 ~~wa-P~v~~~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~ 139 (287)
T cd08999 61 DFWA-PDVSYVNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSD 139 (287)
T ss_pred CccC-ceEEEECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEecc
Confidence 4566 999999999999999876544556899999877556898766433 34567899999999 89999995432
Q ss_pred CC---CeeEEEEe--ccCCcCceeeee-cc-------CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCC
Q 045656 261 AK---GEVRLYRA--VNFPLEWKLEKI-IM-------KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPF 327 (802)
Q Consensus 261 ~s---g~l~LYra--~~FP~~We~~~~-Ll-------~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSpl 327 (802)
.. +...||.+ ..-...|+.+.. ++ ...++.|.|++++|+||||+|..........+.+.+++|++++
T Consensus 140 ~~~~~~~~~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~ 219 (287)
T cd08999 140 GNSIGKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSKSLL 219 (287)
T ss_pred CCCCCCCceEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeCCCc
Confidence 22 12224433 222234543332 22 1248999999999999999997422111125578899999999
Q ss_pred CCCeeCCCCCeee--CCCCCCcccCCccEEE-CCeEEEEcccCCC----CCCceEEEEEec
Q 045656 328 GPWKPHKKNPIYN--GDKSLGARNGGRPFVY-DGNLYRVGQDCAE----SYGRRVRTFKVE 381 (802)
Q Consensus 328 GPW~~hp~NPI~~--~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~----~YG~~L~l~~It 381 (802)
|||++.+.+|+.. ......+-.++.+|.. +|+.|........ ..||.+.|.+|+
T Consensus 220 Gpw~~~~~~~~~~~~~~~~~~g~gh~~~~~~~~g~~~~~yh~~~~~~~~~~~R~~~i~~~~ 280 (287)
T cd08999 220 GPYVKAPGPPLLTSSGNGRWVGPGHNTVVTDDDGRDWLLYHAWDKADSGFTGRQMYLDRLE 280 (287)
T ss_pred CCcCCCCCCcceeccCCCeEEcCCCCeEEECCCCCEEEEEEEEcCCCCCCCCceEEEEEEE
Confidence 9999999888886 2211222234577776 7998887665433 578888888884
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=142.57 Aligned_cols=200 Identities=22% Similarity=0.290 Sum_probs=146.1
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEE--CCEEEEEEEeeecc---CCCceEEEEEEeCCCCCceEeeeeecC---CCc
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQ--GNDLYLFYETKNSI---TMQGDIGVAKSVDKGATWQQLGIALDE---DWH 240 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~--~g~~ylF~E~~~~~---~~~G~I~va~S~D~g~tw~~~gvvLde---~~H 240 (802)
.||||+.. + + ..-+.||++++. +|+||||++..... .....|.+++|.| +.+|+..+.++.. .-+
T Consensus 5 ~~pvl~~~-~---g--~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~D-Lv~W~~~~~~~~~~~~~~~ 77 (276)
T cd08983 5 GNPVLTST-A---G--TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTD-LVNWTFQRLVKVNPPNAGN 77 (276)
T ss_pred CceEEeCC-c---C--CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCc-ccCCcccceeecCCCCcCc
Confidence 58999942 2 2 245799999987 89999999986421 1234799999977 9999999877522 357
Q ss_pred eeeeEEEEe--CCEEEEEeCCC------CCCeeEEEEecc-CCcCceeeeeccCC--CccCCEEEEECCEEEEEEeCCCC
Q 045656 241 LSFPYVFDY--HGQIYMMPESR------AKGEVRLYRAVN-FPLEWKLEKIIMKK--PLVDPFMINHDGQYWLFGSDHSG 309 (802)
Q Consensus 241 LSyP~VF~~--dG~iYMiPEss------~sg~l~LYra~~-FP~~We~~~~Ll~~--~~vDatI~~~dG~wwLF~S~~~~ 309 (802)
+|+|+||.+ +|++||+=-+. ......+|-++. -+..|+..+.+++. ..+|+++++.+|+||||+.+..
T Consensus 78 ~WAPev~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~~~~~~~ID~~v~~~~g~~Yl~~k~~~- 156 (276)
T cd08983 78 TWAPEAFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWIDLGANVIDTTVVKVGGTYYRFYKNEG- 156 (276)
T ss_pred EeCccceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCcccccCCCeEeecCCCCeEeeEEEEeCCEEEEEEecCC-
Confidence 999999977 68999993221 245677777763 23578876666653 5899999999999999997741
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECC--eEEEEcccCCCCCCceEEEEEeccCCccc
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDG--NLYRVGQDCAESYGRRVRTFKVEILTKNE 387 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dG--kLyRp~QdC~~~YG~~L~l~~It~Lt~~~ 387 (802)
+..+.++.++++.|+|+..... +... .....|..+|+.++ ++|++...+. +++-..++.+++....
T Consensus 157 -----~~~i~~~~s~~l~g~~~~~~~~-~~~~---~~~~EgP~v~k~~~~~~y~L~~d~y~---~~~Y~~~~t~d~~~~~ 224 (276)
T cd08983 157 -----SKDIELARSKSLTGPWTIVGTG-DAGW---GGAVEGPTVFKLNNGGGWYLYGDNYS---GGGYYPFDTSDLASTS 224 (276)
T ss_pred -----CCcEEEEEeCCCCCCceEeccc-ccCC---CCceeCCeEEEECCCCEEEEEEEECC---CCCeEEEEecCcCCCc
Confidence 2468889999999999876532 2111 23688999999976 8898888765 4566777787775544
Q ss_pred e
Q 045656 388 Y 388 (802)
Q Consensus 388 y 388 (802)
+
T Consensus 225 ~ 225 (276)
T cd08983 225 W 225 (276)
T ss_pred e
Confidence 3
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-13 Score=139.54 Aligned_cols=203 Identities=21% Similarity=0.288 Sum_probs=139.9
Q ss_pred CCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeee-----cCCC
Q 045656 165 AWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIAL-----DEDW 239 (802)
Q Consensus 165 ~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvL-----de~~ 239 (802)
.|-....+++..+.... ....++| |.++..++++||||...+. .....|++++|++....|+..+.+. ....
T Consensus 43 ~W~~~g~~l~~~~~~~~-~~~~~wA-P~i~~~~g~yy~yy~~~~~-~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~ 119 (274)
T cd08990 43 NWTDHGVILSVTDFPAW-AKGQAWA-PDVVEKNGKYYLYFPARDK-DGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGW 119 (274)
T ss_pred CcEECcccccCCCCCcc-ccCCcCc-CeEEEECCEEEEEEEeecC-CCceEEEEEEeCCCCCCCCCCCCccccccCCCCC
Confidence 35455666664433211 1345777 9999999999999998644 3467899999987566798876432 2356
Q ss_pred ceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEeccCCcCceeeeeccC----------CCccCCEEEEECCEEEEEEeCCC
Q 045656 240 HLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMK----------KPLVDPFMINHDGQYWLFGSDHS 308 (802)
Q Consensus 240 HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll~----------~~~vDatI~~~dG~wwLF~S~~~ 308 (802)
....|.||.+ ||++||+-.+. ..+.+-+..+-...|+-+...+. ...+.|.|++++|+||||+|...
T Consensus 120 ~~iDp~vf~d~dG~~yl~~~~~--~~~~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~ 197 (274)
T cd08990 120 YSIDPAVFIDDDGQAYLYWGGG--LGLRVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD 197 (274)
T ss_pred CccCCcEEECCCCCEEEEECCc--CCEEEEEeCccccccCCCcEEEEeccccCCCCCCcccceeEEEECCEEEEEEECCC
Confidence 7889999887 68999996543 34555554433456754443221 23799999999999999999741
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC----CCCCceEEEEEec
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA----ESYGRRVRTFKVE 381 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~----~~YG~~L~l~~It 381 (802)
...+.+++|++|+|||+.. .+++... ....-.++.+|..+|+.|.+..... ..+||.+.|.+++
T Consensus 198 ------~~~~~~a~s~~p~GP~~~~--g~~~~~~-~~~g~gh~~~~~~~g~~y~~yh~~~~~~~~~~~R~~~~~~~~ 265 (274)
T cd08990 198 ------PEEIAYATSDSPLGPFTYR--GVILDPP-VNGGTNHGSIVEFKGQWYLFYHRATLSGGGDFRRSVCIDELE 265 (274)
T ss_pred ------CcEEEEEEcCCCCCCcccC--cEEecCC-CCCCCCCCeEEEECCeEEEEEECCcCCCCCCcceeEEEEEEE
Confidence 4578899999999999864 3555422 1223344666777899998776554 3467778888875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=137.62 Aligned_cols=189 Identities=26% Similarity=0.354 Sum_probs=136.8
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-CEEEEEeCCCCC----
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-GQIYMMPESRAK---- 262 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-G~iYMiPEss~s---- 262 (802)
+| |.++..+|++||||. .........|.|+++++....|+..+.+.........|.||+++ |+.||+-.+...
T Consensus 68 WA-P~i~~~~g~yy~y~~-~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~ 145 (286)
T PF04616_consen 68 WA-PEIHYINGKYYMYYS-DSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPG 145 (286)
T ss_dssp EE-EEEEEETTEEEEEEE-EESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSE
T ss_pred cC-CeEEEcCCeEEEEEE-ccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccc
Confidence 78 999999999999999 33334566799999988667999988765557889999999998 999999654433
Q ss_pred CeeEEEEeccCCcCceeee-e-ccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 263 GEVRLYRAVNFPLEWKLEK-I-IMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 263 g~l~LYra~~FP~~We~~~-~-Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
..+.+-+..+--..+..+. . +.. ...+.|.+++++|+||||+|.. +....+++.+++|++|+|||+..
T Consensus 146 ~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~---~~~~~y~v~~~~s~~~~gp~~~~ 222 (286)
T PF04616_consen 146 GGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAG---GTGSPYQVGYARSDSPLGPWEWK 222 (286)
T ss_dssp EEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEES---GSSTTTEEEEEEESSTTSGGEET
T ss_pred eeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEecc---CCCCCceEEEeeccCCCCceeec
Confidence 4555555433222333333 2 111 1489999999999999999963 22234789999999999999999
Q ss_pred CCCCeeeC---CCCCCcccCCccEEE-CCeEEEEcccCCC-----CCCceEEEEEec
Q 045656 334 KKNPIYNG---DKSLGARNGGRPFVY-DGNLYRVGQDCAE-----SYGRRVRTFKVE 381 (802)
Q Consensus 334 p~NPI~~~---~~~~~aR~GG~vF~~-dGkLyRp~QdC~~-----~YG~~L~l~~It 381 (802)
+.+|++.. ......-.++.+|.. ||+.|+..+.... ..+|.+.+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~g~gH~~~~~~~~g~~~~~yh~~~~~~~~~~~~R~~~i~~v~ 279 (286)
T PF04616_consen 223 KGNPILFSRDGENGVYGPGHGSVFKDPDGRWYIVYHARNPGGGGTGGGRSTRIQPVT 279 (286)
T ss_dssp TTCBCEGTTBTTSSCEEEEEEEEEEETTSEEEEEEEEEETSTSTGTTCEEEEEEEEE
T ss_pred cCCeEEEeeccCCccccCccCCEEECCCCCEEEEEeeccCCCCCCCCCcEEEEEEEE
Confidence 98998763 111222334667777 8999988776543 678888888874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=132.10 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=156.2
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec----C-----CCceeeeEEEEeCCEEEEEeCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD----E-----DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd----e-----~~HLSyP~VF~~dG~iYMiPEs 259 (802)
|||++++.+|++|||++.... ....|.+++|.| +.+|+..+.+|. . ...++.|.|+.++|++||+--+
T Consensus 1 ~DP~v~~~~~~yyl~~t~~~~--~~~~i~i~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~y~~ 77 (271)
T cd08978 1 ADPYILRYNGKYYLYGSTDDA--AGPGVQVWSSKD-LVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYYEGKYYLYYSV 77 (271)
T ss_pred CCCcEEEECCEEEEEEecCCc--CCCcEEEEECCc-cCCcEECCcccccccccCCcccCCceeCCeEEEECCEEEEEEEc
Confidence 799999999999999998643 234689999887 899999998774 1 2469999999999999999654
Q ss_pred C----CCCeeEEEEeccCCcCceeee-----eccCCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 260 R----AKGEVRLYRAVNFPLEWKLEK-----IIMKKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 260 s----~sg~l~LYra~~FP~~We~~~-----~Ll~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
. ....+.+..+.+ |..|.... ...+...+||++|..+ |++||+++... .+ .....+.++..++.+..
T Consensus 78 ~~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~-~~-~~~~~i~~~~l~~~~~~ 154 (271)
T cd08978 78 SDFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGD-PG-AGFGGIYISELTDDLTK 154 (271)
T ss_pred ccCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEeccc-CC-CCCCcEEEEEECccccc
Confidence 3 234555555544 45543322 1123468999999997 99999997631 11 12456777777766555
Q ss_pred CeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCC-CCCceEEEEEeccCC-ccceEEec------cccCCCCCC
Q 045656 330 WKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAE-SYGRRVRTFKVEILT-KNEYKELE------GRNAWNGAR 401 (802)
Q Consensus 330 W~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~-~YG~~L~l~~It~Lt-~~~y~E~~------~~~~w~~~~ 401 (802)
+...+..+..... ......|..+|+.+|++|++...+.. .++..+.+.+.+.+. +++.+... ..... ..+
T Consensus 155 ~~~~~~~~~~~~~-~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~-~~~ 232 (271)
T cd08978 155 PTGPPVLSASSGN-NNAVTEGPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFV-GVG 232 (271)
T ss_pred ccCCceeeeeecc-CCCceEccEEEEECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCc-ccc
Confidence 5422211001111 12356889999999999998877654 677888888887663 44432111 11111 134
Q ss_pred ccccccccCCCCCeEEEEeCcccCCCCcchh
Q 045656 402 YHHLDAQQLSSGEWIAVMDGDRALSGDSVQR 432 (802)
Q Consensus 402 ~Hhld~~~l~~g~~i~vvDG~r~~~~~~~~~ 432 (802)
..|-++-+.++++|.+++=+.+...++.-|+
T Consensus 233 ~gh~~~~~~~~g~~~~~yh~~~~~~~~~~r~ 263 (271)
T cd08978 233 LGHGSVVRDKNGEWYLVYHAYNANSDNPNRK 263 (271)
T ss_pred CCCceEEECCCCCEEEEEEeecCCCCCCCce
Confidence 4454676666789999999888654333343
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=135.35 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=146.1
Q ss_pred CceeeCeeeEEEC-CEEEEEEEeeeccCC------CceEEEEEEeCCCCCceEeeeeecCC-------CceeeeEEEEeC
Q 045656 185 SNFVADPFFYLQG-NDLYLFYETKNSITM------QGDIGVAKSVDKGATWQQLGIALDED-------WHLSFPYVFDYH 250 (802)
Q Consensus 185 ~~F~ADPFll~~~-g~~ylF~E~~~~~~~------~G~I~va~S~D~g~tw~~~gvvLde~-------~HLSyP~VF~~d 250 (802)
..++=||-+++.+ |+|||||........ ...|++|+|+|....|++.++||... .+.+.|.|++.+
T Consensus 10 ~~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~~ 89 (291)
T cd08994 10 DYSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRFD 89 (291)
T ss_pred CeEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEEC
Confidence 3455569999765 699999998654322 34699999988656899999999543 268899999999
Q ss_pred CEEEEEeCCCC----------CCeeEEEEeccCCcCcee-eeecc-CC-------CccCCEEEEE-CCEEEEEEeCCCCC
Q 045656 251 GQIYMMPESRA----------KGEVRLYRAVNFPLEWKL-EKIIM-KK-------PLVDPFMINH-DGQYWLFGSDHSGF 310 (802)
Q Consensus 251 G~iYMiPEss~----------sg~l~LYra~~FP~~We~-~~~Ll-~~-------~~vDatI~~~-dG~wwLF~S~~~~~ 310 (802)
|++||+..... ...+-+..+.+.-..|+. +..++ .. .++||++++. +|+|||+|+.....
T Consensus 90 g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~ 169 (291)
T cd08994 90 GKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYN 169 (291)
T ss_pred CEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccC
Confidence 99999965422 244555555443347876 33333 21 2799999999 99999999875321
Q ss_pred CCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCC---CCceEEEEEeccCCccc
Q 045656 311 GTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAES---YGRRVRTFKVEILTKNE 387 (802)
Q Consensus 311 g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~---YG~~L~l~~It~Lt~~~ 387 (802)
.......+.+++|+++.|+|+++...||.... .........+|+.+|++|+..-.+... -...+.+++.+++-.|+
T Consensus 170 ~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~-~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a~S~Dg~~W~ 248 (291)
T cd08994 170 PTKGNRKYGVAIADSPTGPYTKVSGPPFIEPG-DNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYFRSKDGIHWK 248 (291)
T ss_pred CCCCcEEEEEEEeCCCCCCCEECCCCccccCC-CCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEEECCCCCCce
Confidence 11123357899999999999999887875221 123445678899999999988776531 24588899999988887
Q ss_pred eEE
Q 045656 388 YKE 390 (802)
Q Consensus 388 y~E 390 (802)
++.
T Consensus 249 ~~~ 251 (291)
T cd08994 249 LAP 251 (291)
T ss_pred ecC
Confidence 663
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-12 Score=133.51 Aligned_cols=221 Identities=19% Similarity=0.253 Sum_probs=145.8
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-C--------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-D-------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-~-------- 238 (802)
++||||+ ..+|||.+++.+++||+|.+.... .-.|.+.+|.| +.+|+..+.+++. +
T Consensus 2 ~~NPv~~-----------~~~~DP~v~~~~~~yY~~~t~~~~---~~gi~v~~S~D-l~~W~~~g~~~~~~~~~~~~~~~ 66 (269)
T cd09001 2 YTNPIIY-----------ADYPDPDVIRVGDDYYMVSTTMHY---SPGAPILHSKD-LVNWEIIGYVYDRLDDGDAYNLE 66 (269)
T ss_pred ccCCccC-----------CCCCCCeEEEECCEEEEEECCccc---CCCCEEEEccc-ccCCeEccccccccccccccccc
Confidence 5799987 366999999999999999997432 12488999877 8999999977642 1
Q ss_pred -------CceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCc-CceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCC
Q 045656 239 -------WHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPL-EWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSG 309 (802)
Q Consensus 239 -------~HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~-~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~ 309 (802)
..+|+|.|...+|++||+--.. ...+.+..+.+ |. .|+.+..+. ..+||++|.. ||+.||++...
T Consensus 67 ~~~~~~~~~~WAP~v~~~~gkyy~yys~~-~~~~~v~~a~~-p~Gpw~~~~~~~--~~iDp~~f~D~dG~~Yl~~~~~-- 140 (269)
T cd09001 67 NGGNAYGKGQWAPSLRYHNGTFYVFFCTN-TGGTYIYTADD-PEGPWTKTALDG--GYHDPSLLFDDDGTAYLVYGGG-- 140 (269)
T ss_pred ccCCCCCCCEECCceEEECCEEEEEEEec-CCCeEEEEcCC-CCCCCcCCCcCC--CcccCceEEcCCCCEEEEeCCC--
Confidence 2589999999999999994333 34567777654 54 576543221 6799999985 89999998531
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC--CCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccC-Ccc
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS--LGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEIL-TKN 386 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~--~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~L-t~~ 386 (802)
.+.+..=++.+.... ...+++..... .....|..+|+.+|++|++.=.+. ..+..+.+.+.+++ .|+
T Consensus 141 -------~i~~~~l~~d~~~~~--~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~-~~~~~~~~~~s~~~~GP~ 210 (269)
T cd09001 141 -------TIRLVELSPDLTGVG--GKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWG-GGGRTQTCLRSKSLTGPY 210 (269)
T ss_pred -------cEEEEEECcccCCcC--CCceEEEeCCCccccccccCeEEEECCEEEEEEecCC-CCCceEEEEEeCCCCCCc
Confidence 344443222222221 11222222111 236788999999999998764332 33457777787764 565
Q ss_pred ceEEeccccCCCCCCccccccccCCCCCeEEEE
Q 045656 387 EYKELEGRNAWNGARYHHLDAQQLSSGEWIAVM 419 (802)
Q Consensus 387 ~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vv 419 (802)
+.+.......-...+.||-++-+.++|+|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~gh~~~~~~~~G~~~~~~ 243 (269)
T cd09001 211 ESKVVLEDGSTGGNGPHQGGIVDTPDGEWYFML 243 (269)
T ss_pred CCcceecCCCCCCCCCCCEEEEECCCCCEEEEE
Confidence 544322211112346888778887888877665
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-12 Score=132.30 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=147.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------Cceee
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------WHLSF 243 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSy 243 (802)
|||+. ..+|||++++.+++||||++... ...|.+++|.| +.+|+..+.+|+.. ..+|.
T Consensus 1 nPv~~-----------~~~~DP~i~~~~g~yy~~~t~~~----~~~i~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wa 64 (287)
T cd08999 1 NPVID-----------GDFPDPSVIRVDGTYYAYATNGN----GPNVPIATSTD-LVNWTYLGDAFPKLPRWWTGGDFWA 64 (287)
T ss_pred CCccC-----------CCCCCCeEEEECCEEEEEEeCCC----CCcEEEEECCC-CCCcEECCcccCCCCCcccCCCccC
Confidence 89987 36799999999999999999742 26899999988 99999999888652 35999
Q ss_pred eEEEEeCCEEEEEeCCCC--CCeeEEEEec-cCCc-Cceeeee--cc--C--CCccCCEEEEE-CCEEEEEEeCCCCCCC
Q 045656 244 PYVFDYHGQIYMMPESRA--KGEVRLYRAV-NFPL-EWKLEKI--IM--K--KPLVDPFMINH-DGQYWLFGSDHSGFGT 312 (802)
Q Consensus 244 P~VF~~dG~iYMiPEss~--sg~l~LYra~-~FP~-~We~~~~--Ll--~--~~~vDatI~~~-dG~wwLF~S~~~~~g~ 312 (802)
|.|+..+|++||+--... .....++.|+ +-|. .|+.... +. + ...+||++++. ||++||++..... +.
T Consensus 65 P~v~~~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~-~~ 143 (287)
T cd08999 65 PDVSYVNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGN-SI 143 (287)
T ss_pred ceEEEECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCC-CC
Confidence 999999999999943221 2333444332 3343 5765432 22 1 25899999999 9999999975311 11
Q ss_pred CCCCcEEEEEEcCCCCCCeeCCCCCeeeCC--CCCCcccCCccEEECCeEEEEccc--C-CCCCCceEEEEEeccCC-cc
Q 045656 313 TQNGQLEIWYSSSPFGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDGNLYRVGQD--C-AESYGRRVRTFKVEILT-KN 386 (802)
Q Consensus 313 ~~n~~L~i~~AdSplGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dGkLyRp~Qd--C-~~~YG~~L~l~~It~Lt-~~ 386 (802)
.....+.+..-+.-.-.|...+. .|+... .......|..+|+.+|++|++.-. | ...-...+.+.+.+++. ++
T Consensus 144 ~~~~~i~~~~ls~d~~~~~~~~~-~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw 222 (287)
T cd08999 144 GKPTPIYLQELSADGLTLTGEPV-RLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPY 222 (287)
T ss_pred CCCceEEEEEeCCCCccccCCcE-eeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCc
Confidence 11112333321211223433221 121110 012246777889999999997643 2 22113457777777765 76
Q ss_pred ceEEec---cc-cCCCCCCccccccccCCCCCeEEEEeCcccCC
Q 045656 387 EYKELE---GR-NAWNGARYHHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 387 ~y~E~~---~~-~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
+.+... .. ..=.-.+..|-++-+-++|+|.+|+=+.+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~gh~~~~~~~~g~~~~~yh~~~~~~ 266 (287)
T cd08999 223 VKAPGPPLLTSSGNGRWVGPGHNTVVTDDDGRDWLLYHAWDKAD 266 (287)
T ss_pred CCCCCCcceeccCCCeEEcCCCCeEEECCCCCEEEEEEEEcCCC
Confidence 654332 10 11001235566776666788888886666544
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=131.48 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=129.4
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee-ecCCCceeeeEEEEeC-CEEEEEeCCCC--
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA-LDEDWHLSFPYVFDYH-GQIYMMPESRA-- 261 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv-Lde~~HLSyP~VF~~d-G~iYMiPEss~-- 261 (802)
.++| |.++..+|+|||||...........|++|+|+|....|+..+.. +........|.||.++ |++||+-....
T Consensus 54 ~~wa-P~v~~~~g~yyl~ys~~~~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~ 132 (294)
T cd08991 54 GFWA-PEVYYYNGKFYMYYSANDRDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYG 132 (294)
T ss_pred cEEc-cEEEEECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCC
Confidence 4555 99999999999999987554456789999987755678776533 3333456789999776 89999943211
Q ss_pred C--CeeEEEEeccCCcCceeeee-----cc-----------------C-CCccCCEEEEECCEEEEEEeCCCCCCCCCCC
Q 045656 262 K--GEVRLYRAVNFPLEWKLEKI-----IM-----------------K-KPLVDPFMINHDGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 262 s--g~l~LYra~~FP~~We~~~~-----Ll-----------------~-~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~ 316 (802)
. +.+.+.+...--..|+-+.+ +. + .-.+.|.|++++|+||||||.. .+. ..++
T Consensus 133 ~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~-~~~-~~~y 210 (294)
T cd08991 133 NRVSDIYGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSAN-HYE-NEDY 210 (294)
T ss_pred CcccceEEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECC-CCC-CCCc
Confidence 1 23444443221112221111 00 0 1389999999999999999863 222 2345
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeCCCC--CCcccCCccEEE-C-CeEEEEcccCCC---CCCceEEEEEec
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNGDKS--LGARNGGRPFVY-D-GNLYRVGQDCAE---SYGRRVRTFKVE 381 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~~~~--~~aR~GG~vF~~-d-GkLyRp~QdC~~---~YG~~L~l~~It 381 (802)
.+.+++|++++|||++++.+||+..... ..+-.++.+|.. | |+.|++.+.... ..||.+.|.+|+
T Consensus 211 ~~~~a~s~~~~gp~~~~~~~pl~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~~~~~R~~~~~~~~ 282 (294)
T cd08991 211 GVGYATADSPLGPWTKYSNNPILRRNGDKGVEGTGHNSVVKSPDGGELYIVYHAHNATDEVEPRTMRIDPLY 282 (294)
T ss_pred eEEEEEcCCCCCCcEecCCCceEeeCCCCceEeCCCCceEECCCCCEEEEEEeeecCCCCCCCceEEEEEEE
Confidence 7889999999999999989999986422 222233556665 4 788887775432 258889888885
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=130.86 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=128.2
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCC---
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESR--- 260 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss--- 260 (802)
..++| |.++..++++||||...+.. ....|.|+++++....|+.... +.. ....|.||.+ ||+.||+=.+.
T Consensus 66 ~~~WA-P~v~~~~g~yy~yy~~~~~~-~~~~~~v~~s~~p~gpw~~~~~-~~~--~~iDp~vf~d~dG~~Y~~~~~~~~~ 140 (288)
T cd09000 66 GGIWA-PTIRYHDGTFYLITTNVDGM-KDGGNFIVTADDPAGPWSDPVW-LDS--GGIDPSLFFDDDGKVYLVGNGWDER 140 (288)
T ss_pred CceEc-ceEEEECCEEEEEEEecCCC-CCCceEEEEeCCCCCCCcCCEe-cCC--CccCCceeEcCCCCEEEEecccCCc
Confidence 46788 99999999999999986532 3457888988775567875432 322 5678999998 78999984332
Q ss_pred ----CCCeeEEEEeccCCcCceee--e-eccC----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 261 ----AKGEVRLYRAVNFPLEWKLE--K-IIMK----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 261 ----~sg~l~LYra~~FP~~We~~--~-~Ll~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
..+.|.+-+.. +..|+.. . .+.+ ...+.|.|++++|+||||+|.. +......+.+++|++++||
T Consensus 141 ~~~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~---~~~~~~~v~~~~s~~~~Gp 215 (288)
T cd09000 141 RGYNGHGGIWLQEID--LETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEG---GTGYGHSVTVARSRSITGP 215 (288)
T ss_pred cccCCCCcEEEEEEc--cccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecC---CCCCCeEEEEEEeCCCCCC
Confidence 12456665543 3334332 1 1222 2489999999999999999863 2223457889999999999
Q ss_pred CeeCCCCCeeeCCC---CCCcccC-CccEEE-CCeEEEEcccCC-------CCCCceEEEEEec
Q 045656 330 WKPHKKNPIYNGDK---SLGARNG-GRPFVY-DGNLYRVGQDCA-------ESYGRRVRTFKVE 381 (802)
Q Consensus 330 W~~hp~NPI~~~~~---~~~aR~G-G~vF~~-dGkLyRp~QdC~-------~~YG~~L~l~~It 381 (802)
|++.+.+||+.... .....+| +.+|.. ||+.|....... ...||.+.|.+|+
T Consensus 216 ~~~~~~~~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH~~~~~~~~~~~~~~R~~~i~~~~ 279 (288)
T cd09000 216 YEPAPNNPILTNRDLPDSPIQATGHADLVQTPDGEWWAVFLATRPYGGKGFCPLGRETFLAPVT 279 (288)
T ss_pred CccCCCCceEEcCCCCCCcceeCCccceEECCCCCEEEEEEEEcCCCCCccCcCccccEEEEEE
Confidence 99988899987531 0111233 556766 899888765432 1457888888875
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08988 GH43_ABN Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-11 Score=126.90 Aligned_cols=193 Identities=19% Similarity=0.324 Sum_probs=127.2
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCC-----ceEeeeeecC----CCceeeeEEEEe-CCEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGAT-----WQQLGIALDE----DWHLSFPYVFDY-HGQIY 254 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~t-----w~~~gvvLde----~~HLSyP~VF~~-dG~iY 254 (802)
..++| |.++..+|++||||..-+.......|+++++++.... |+..+.++.. ......|.||.+ ||+.|
T Consensus 55 ~~~WA-P~v~~~~G~yylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Y 133 (279)
T cd08988 55 GHLWA-PDIYQHNGKFYLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPW 133 (279)
T ss_pred CCEec-ceEEEECCEEEEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEE
Confidence 35889 9999999999999987544444578999998774444 4333344332 234689998866 58999
Q ss_pred EEeCCCCCCeeEEEEeccCCcC----ceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEc
Q 045656 255 MMPESRAKGEVRLYRAVNFPLE----WKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSS 324 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~----We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~Ad 324 (802)
|+=.+.. +.+.+-+..+--.+ .+. ..++. .-++.|.|++++|+||||+|...++ +....+.+.+++|+
T Consensus 134 l~~g~~~-~gi~~~eL~~d~~~~~~~~~~-~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~ 211 (279)
T cd08988 134 LSFGSFW-GGIKLFELDKDTMKPAEPGEL-HSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSK 211 (279)
T ss_pred EEecccC-CCEEEEEECcccCCccCCCcc-eEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeC
Confidence 9954321 34555444321011 111 12332 2479999999999999999874322 12245678899999
Q ss_pred CCCCCCeeCCCCCeeeCC--------CCCCcccCCccEEECCeEEEEcc--cCCCCCCceEEEEEe
Q 045656 325 SPFGPWKPHKKNPIYNGD--------KSLGARNGGRPFVYDGNLYRVGQ--DCAESYGRRVRTFKV 380 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~--------~~~~aR~GG~vF~~dGkLyRp~Q--dC~~~YG~~L~l~~I 380 (802)
+|+|||+..+.||++... ....+..++.+|..+|+.|.... ++.....+.+.|.+|
T Consensus 212 ~~~GPy~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~g~~~~~yH~~~~~~~~~r~~~i~~l 277 (279)
T cd08988 212 NITGPYLDKTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDDGKDYLVLHAYDAADNGEPKLKILPL 277 (279)
T ss_pred CCCCCCCCCCCCCcccCCceEEEcCCCcEEcCCCCEEEeCCCCEEEEEEEeeCCCCCCcEEEEEec
Confidence 999999998889987531 11222245677777888887665 445666777766665
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla |
| >cd08982 GH43_3 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=131.11 Aligned_cols=178 Identities=25% Similarity=0.409 Sum_probs=120.1
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeEE
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRL 267 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~L 267 (802)
+|||++++.+++||++.+.. . ++.+|.| +.+|+..+.++. ..++|+|.|+.++|++||.-... .+.+
T Consensus 3 ~~DP~i~~~~g~YY~~~T~~-----~---~i~~S~D-L~~W~~~g~~~~-~~~~WAP~i~~~~g~~Y~~~~~~---~~~v 69 (295)
T cd08982 3 AADPVVILFKGEYYLFASMS-----G---GYWHSSD-LIDWDFIPTNSL-PDEGYAPAVFVYDGTLYYTASTY---NSRI 69 (295)
T ss_pred CCCCeEEEECCEEEEEEeCC-----C---CeEECCC-cCCceECCcccC-CCCcCcCEEEEECCEEEEEEeCC---CceE
Confidence 59999999999999998872 1 2578777 899999998765 66799999999999999872111 1122
Q ss_pred EEeccCCcC--ceee-------------------------------------------------eeccC-----------
Q 045656 268 YRAVNFPLE--WKLE-------------------------------------------------KIIMK----------- 285 (802)
Q Consensus 268 Yra~~FP~~--We~~-------------------------------------------------~~Ll~----------- 285 (802)
+.+.+ |.. |... ..++.
T Consensus 70 ~~s~~-p~gp~w~~~~~~~~~~~IDp~vf~DdDGk~Yl~~g~~~~~~i~~~eL~~d~~~~~g~~~~l~~~~~~~~~We~~ 148 (295)
T cd08982 70 YKTAD-PLSGPWEEVDKSFPPGLADPALFIDDDGRLYLYYGCSNNYPLRGVEVDPDTFRPIGEPVELIPGNPDKHGWERF 148 (295)
T ss_pred EEeCC-CCCCCccccccccCCCccCCceEECCCCCEEEEEecCCCCCeEEEEECcccCCccCcceEEEeCCCCCcCeEec
Confidence 22210 110 1100 00110
Q ss_pred ----------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc-CCccE
Q 045656 286 ----------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN-GGRPF 354 (802)
Q Consensus 286 ----------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~-GG~vF 354 (802)
.-.++|.+++++|+||||||.. +.+ ...+.+.+++|++|+|||+..+.|||+.+.......+ ++.+|
T Consensus 149 g~~~~~~~~~~~~EGP~i~k~~G~YYL~yS~~-~~~-~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~GH~s~v 226 (295)
T cd08982 149 GENNDNPDKTPWMEGAWMTKHNGKYYLQYAAP-GTE-FNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGAGHGSTF 226 (295)
T ss_pred CcccccccCCccccccEEEEECCEEEEEEeCC-Ccc-cCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecCCcccEE
Confidence 0257899999999999999863 111 1345688999999999999988899987532111223 45666
Q ss_pred EE-CCeEEEEcc--cC-CCCCCceEEEEEec
Q 045656 355 VY-DGNLYRVGQ--DC-AESYGRRVRTFKVE 381 (802)
Q Consensus 355 ~~-dGkLyRp~Q--dC-~~~YG~~L~l~~It 381 (802)
.. +|+.|.+.. .. ....+|.+.+.+|+
T Consensus 227 ~~~~G~~~~~yh~~~~~~~~~~R~~~i~pv~ 257 (295)
T cd08982 227 QDKYGNYWHVGTMTVSVKHGFERRIGLFPAF 257 (295)
T ss_pred ECCCCCEEEEEEEECCCCCCCCceeEEEEEE
Confidence 64 899888742 22 24567888888886
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=129.48 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=125.2
Q ss_pred ceeeCeeeEEEC----CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe-e-eeecCC-------CceeeeEEEEe-CC
Q 045656 186 NFVADPFFYLQG----NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL-G-IALDED-------WHLSFPYVFDY-HG 251 (802)
Q Consensus 186 ~F~ADPFll~~~----g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~-g-vvLde~-------~HLSyP~VF~~-dG 251 (802)
..+| |.++..+ +++||||.+ ....|+||+|++....|+.. + .++... ..-..|.||.+ ||
T Consensus 77 ~~WA-P~v~~~~~~~~gkyylyy~~-----~~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG 150 (311)
T cd09003 77 NSWA-PSIAVKKINGKGKFYLYFAN-----GGGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDG 150 (311)
T ss_pred ccCC-CceEEeccCCCCEEEEEEec-----CCCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCC
Confidence 4688 9999888 999999975 23469999988866789875 3 333321 23579999987 79
Q ss_pred EEEEEeCCCC-------CCeeEEEEeccCCcCceeeeeccCC--CccCCEEEEECCEEEEEEeCCCC---CCCCCCCcEE
Q 045656 252 QIYMMPESRA-------KGEVRLYRAVNFPLEWKLEKIIMKK--PLVDPFMINHDGQYWLFGSDHSG---FGTTQNGQLE 319 (802)
Q Consensus 252 ~iYMiPEss~-------sg~l~LYra~~FP~~We~~~~Ll~~--~~vDatI~~~dG~wwLF~S~~~~---~g~~~n~~L~ 319 (802)
+.||+=.+.. .+.+.+-+..+-...-+-+.+.+.. ..|.|.|++++|+|||++|...+ .+...++.+.
T Consensus 151 ~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~v~ 230 (311)
T cd09003 151 QGYLYFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAPYFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGRIA 230 (311)
T ss_pred CEEEEECCccCCCccccCCCEEEEEeCCCceeccCCceEccCCCceEeeeEEEECCEEEEEEeCCCCccCCCCCCceeEE
Confidence 9999964322 2456666654322221112232322 47999999999999999986421 1233456788
Q ss_pred EEEEcCCCCCCeeCCCCCeeeCCCC---CCcccCCccEEECCeEEEEcccCC--------CCCCceEEEEEec
Q 045656 320 IWYSSSPFGPWKPHKKNPIYNGDKS---LGARNGGRPFVYDGNLYRVGQDCA--------ESYGRRVRTFKVE 381 (802)
Q Consensus 320 i~~AdSplGPW~~hp~NPI~~~~~~---~~aR~GG~vF~~dGkLyRp~QdC~--------~~YG~~L~l~~It 381 (802)
+++|++|+|||++. .||+..... ...-.++.+|..+|+.|.+..... ..++|.+.|.+++
T Consensus 231 y~~s~~~~GP~~~~--g~il~~~~~~~~~~g~gH~s~~~~~g~~y~vyH~~~~~~~~~~~~~~~R~~~i~~~~ 301 (311)
T cd09003 231 YMTSKNPMGPFTYK--GIILKNPGAFFGNGGNNHHSIFEFKGKWYIAYHARTLAKALGGATAGYRSPHIDELT 301 (311)
T ss_pred EEEcCCCCCCcccC--CEeccCCccccCCccCCCccEEEeCCeEEEEEeCCcCCccccCCCCceEEEEEEEEE
Confidence 89999999999973 466654321 112234567766999998776432 2456888888885
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose |
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=120.43 Aligned_cols=188 Identities=16% Similarity=0.242 Sum_probs=126.4
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec---------CCCceeeeEEEEeC-CEEEEEeC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD---------EDWHLSFPYVFDYH-GQIYMMPE 258 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd---------e~~HLSyP~VF~~d-G~iYMiPE 258 (802)
+||.++..+|++|||++..... ....|++++|.| +.+|+..+.+|. ....++.|.|+..+ |++||+--
T Consensus 1 ~DP~i~~~~g~yyl~~~~~~~~-~~~~~~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt 78 (286)
T cd08772 1 ADPNLIKYNGTYYIFFSGDDKN-GNPGIAHATSKD-LVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYT 78 (286)
T ss_pred CCCeEEEECCEEEEEEEccCCC-CCceEEEEECCC-cCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEE
Confidence 6999999999999999986543 456799999988 999999998873 13579999999998 99999943
Q ss_pred C----CCCCeeEEEEeccCCcCceeee--ecc--------CCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEE
Q 045656 259 S----RAKGEVRLYRAVNFPLEWKLEK--IIM--------KKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYS 323 (802)
Q Consensus 259 s----s~sg~l~LYra~~FP~~We~~~--~Ll--------~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~A 323 (802)
+ .....+.+..+.+.-..|+... .++ ....+||++++.+ |+|||+++... ......+.++.+
T Consensus 79 ~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~---~~~~~~i~~~~s 155 (286)
T cd08772 79 DVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGD---HHNFGGIFLYES 155 (286)
T ss_pred eecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEcccc---CCCCCeEEEEEc
Confidence 3 2345566666655433455321 111 1248999999997 99999996531 112346777777
Q ss_pred cCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCC---CCCceEEEEEecc
Q 045656 324 SSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAE---SYGRRVRTFKVEI 382 (802)
Q Consensus 324 dSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~---~YG~~L~l~~It~ 382 (802)
+++ ..|+..+..++.........-.|..+|+.+|++|++.--... ..+.++...+.+.
T Consensus 156 ~d~-~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 156 DDD-TTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred CCC-CCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 654 457655533222221122355778889999999987643321 3345566666654
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=120.10 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=129.8
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeecCCCceeeeEEEEeC-CEEEEEeCCC---
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALDEDWHLSFPYVFDYH-GQIYMMPESR--- 260 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLde~~HLSyP~VF~~d-G~iYMiPEss--- 260 (802)
.+-+|-++..+|+|||||...........|+++++.|-..-|+..+ ...........|.||.++ |++||+=.+.
T Consensus 58 ~~waP~v~~~~g~yyl~y~~~~~~~~~~~i~~a~s~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~ 137 (271)
T cd08978 58 GLWAPEVIYYEGKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPG 137 (271)
T ss_pred ceeCCeEEEECCEEEEEEEcccCCCCcccEEEEECCCCCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCC
Confidence 3456999999999999999865433467899999877333344321 223345678899999987 9999994332
Q ss_pred -CCCeeEEEEeccCCcCceeeeec------cCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 261 -AKGEVRLYRAVNFPLEWKLEKII------MKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 261 -~sg~l~LYra~~FP~~We~~~~L------l~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
+.+.|.+.+..+-...+..+.++ .....++|.+++++|+||||++... +. ...+.+.+++|++++|||+++
T Consensus 138 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~-~~-~~~y~~~~~~s~~~~Gp~~~~ 215 (271)
T cd08978 138 AGFGGIYISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNGYYYLTYSANG-TG-DYGYNIGYATSDSIDGPYVKK 215 (271)
T ss_pred CCCCcEEEEEECcccccccCCceeeeeeccCCCceEccEEEEECCEEEEEEEeCC-CC-CCCceEEEEECCCCCCCcCcC
Confidence 25677787776533333222221 1124899999999999999998742 11 245688999999999999998
Q ss_pred CCCC--eeeCCCCCCccc-CCccEEE-CCeEEEEcccCC---CCCCceEEEEEec
Q 045656 334 KKNP--IYNGDKSLGARN-GGRPFVY-DGNLYRVGQDCA---ESYGRRVRTFKVE 381 (802)
Q Consensus 334 p~NP--I~~~~~~~~aR~-GG~vF~~-dGkLyRp~QdC~---~~YG~~L~l~~It 381 (802)
..+| ...........+ ++.+|.. +|+.|...+-.. ...++.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~gh~~~~~~~~g~~~~~yh~~~~~~~~~~r~~~~~~~~ 270 (271)
T cd08978 216 GGNAGLESDSAGFVGVGLGHGSVVRDKNGEWYLVYHAYNANSDNPNRKLVINPLV 270 (271)
T ss_pred CCCcceEeccCCCccccCCCceEEECCCCCEEEEEEeecCCCCCCCceEEEEecc
Confidence 7763 221111112233 3566665 589999887654 3567888777763
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-10 Score=120.90 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=118.0
Q ss_pred ceeeCeeeEEECCEEEEEEEeeecc----CCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-CEEEEEeCCC
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-GQIYMMPESR 260 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-G~iYMiPEss 260 (802)
.++| |.++..+|+|||||...... .....|++++|.| +.+|+..++++........|.||..+ |++||+-...
T Consensus 78 ~~WA-P~v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~ 155 (294)
T cd08984 78 TFWA-PEVVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDE 155 (294)
T ss_pred ceeC-ceEEEECCEEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccCCCCcEEeEEEEeCCCEEEEEEECC
Confidence 4667 99999999999999975432 2346899999887 78999988763334557899999876 8999995322
Q ss_pred CCCeeEEEEe-ccCCcCceeeeeccCC-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 261 AKGEVRLYRA-VNFPLEWKLEKIIMKK-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 261 ~sg~l~LYra-~~FP~~We~~~~Ll~~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
..+. .++-+ .+-+..|+....++.. ..+||.+++++|+|||++.. ...+.+|.|+++. +|++.. .++
T Consensus 156 ~~~~-~~~~a~s~D~~~w~~~~~~i~~~~~EgP~v~k~~g~yym~~~~--------~~g~~~~~S~D~~-~W~~~~-~~l 224 (294)
T cd08984 156 RRGS-TTYAADSEDLYHWTVEGPVLGDRPHEGPNVFRWKGYYWMIIDE--------WKGLGVYRSKDAE-NWERQG-GIL 224 (294)
T ss_pred CCCe-EEEEEECCCCCEEEeCCccccCCCCCCCCeeEECCEEEEEEcC--------CceEEEEECCChh-hcEECC-eee
Confidence 2222 22323 2335678875555543 47999999999999999843 1247899999988 999865 333
Q ss_pred eeCC---CCCCcccCCccEEECCeEEEEcccCC
Q 045656 339 YNGD---KSLGARNGGRPFVYDGNLYRVGQDCA 368 (802)
Q Consensus 339 ~~~~---~~~~aR~GG~vF~~dGkLyRp~QdC~ 368 (802)
.... .....-+.+.+|+.+|+.|++.....
T Consensus 225 ~~~~~~~~~~~~~~H~~i~~~~~~~y~~Yh~~~ 257 (294)
T cd08984 225 LKPGTRPDDGAKGRHADVVVTGDRAYIFYFTHP 257 (294)
T ss_pred ccCCCCccccccccCCcEEEeCCEEEEEEEecC
Confidence 3211 00111245788888899998887653
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=121.58 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=119.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKG 263 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg 263 (802)
..++| |.+...+|++||+|... ...|.|+++++....|+..+.+. .-..|.||.+ ||+.||+=.+.
T Consensus 74 ~~~WA-P~v~~~~gkyy~yys~~-----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl~~~~~--- 140 (269)
T cd09001 74 KGQWA-PSLRYHNGTFYVFFCTN-----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYLVYGGG--- 140 (269)
T ss_pred CCEEC-CceEEECCEEEEEEEec-----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEEEeCCC---
Confidence 45888 99999999999999873 34688888777666798776432 5678999874 78999996543
Q ss_pred eeEEEEeccCCcCce-eeeeccC------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCC
Q 045656 264 EVRLYRAVNFPLEWK-LEKIIMK------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKN 336 (802)
Q Consensus 264 ~l~LYra~~FP~~We-~~~~Ll~------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~N 336 (802)
.+.+.+..+--.... ..+++++ ...+.|.|++++|+||||+|.. + .....+.+++|++++|||++.
T Consensus 141 ~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~---~-~~~~~~~~~~s~~~~GP~~~~--- 213 (269)
T cd09001 141 TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAW---G-GGGRTQTCLRSKSLTGPYESK--- 213 (269)
T ss_pred cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecC---C-CCCceEEEEEeCCCCCCcCCc---
Confidence 555555432111221 1233443 2489999999999999999974 1 234577889999999999874
Q ss_pred CeeeCCCCCCcccC-CccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 337 PIYNGDKSLGARNG-GRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 337 PI~~~~~~~~aR~G-G~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
|++.........+| |.+|.. +|+.|...-.-....||.+.+.+++
T Consensus 214 ~~~~~~~~~~~~~gh~~~~~~~~G~~~~~~~~~~~~~gR~~~~~~~~ 260 (269)
T cd09001 214 VVLEDGSTGGNGPHQGGIVDTPDGEWYFMLFQDRGAVGRIPHLAPVT 260 (269)
T ss_pred ceecCCCCCCCCCCCEEEEECCCCCEEEEEcCCCCCCCCEEEEEEEE
Confidence 45543211223344 456765 7887665432234567877777774
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=121.74 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=140.4
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------------CceeeeEEEEeCCEEEE
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------------WHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------------~HLSyP~VF~~dG~iYM 255 (802)
++||.+++.++++|||++.. .|.+++|.| +.+|+..+.+|..+ ..+++|.|+..+|++||
T Consensus 1 ~~DP~v~~~~~~yyl~~t~~-------~i~i~~S~D-l~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~~g~yyl 72 (288)
T cd08998 1 VHDPSIIKEGDTYYLFSTGN-------GIAIAKSKD-LGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYLNGKYYL 72 (288)
T ss_pred CCCCeEEEECCEEEEEEcCC-------CeEEEECCC-CCCcEECCccccCCCccccccccCCCCCccCCeEEEECCEEEE
Confidence 47999999999999999873 799999987 89999999887542 45899999999999999
Q ss_pred EeCCC----CCCeeEEEEeccC-CcCceeeeeccCC-------CccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEE
Q 045656 256 MPESR----AKGEVRLYRAVNF-PLEWKLEKIIMKK-------PLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWY 322 (802)
Q Consensus 256 iPEss----~sg~l~LYra~~F-P~~We~~~~Ll~~-------~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~ 322 (802)
+-... ...++.+..+.+. ...|+....++.. ..+||++|.. +|++||++... ...+.+..
T Consensus 73 ~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~-------~~~i~~~~ 145 (288)
T cd08998 73 YYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSF-------WGGIFLVE 145 (288)
T ss_pred EEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeec-------cCCEEEEE
Confidence 95432 2334566666665 3679875544431 4899999999 99999998642 12344444
Q ss_pred EcCCCCCCeeCC-CCC--eeeCCCCCCcccCCccEEECCeEEEEccc--CC--CCCCceEEEEEeccCC-ccceEEec--
Q 045656 323 SSSPFGPWKPHK-KNP--IYNGDKSLGARNGGRPFVYDGNLYRVGQD--CA--ESYGRRVRTFKVEILT-KNEYKELE-- 392 (802)
Q Consensus 323 AdSplGPW~~hp-~NP--I~~~~~~~~aR~GG~vF~~dGkLyRp~Qd--C~--~~YG~~L~l~~It~Lt-~~~y~E~~-- 392 (802)
-+...+.=. +. ..+ |...........|..+|+.+|++|++.=. |. ...+..|.+++.+.+. |++..+..
T Consensus 146 l~~~~~~~~-~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~ 224 (288)
T cd08998 146 LDPKTGKPL-YPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDM 224 (288)
T ss_pred eCcccCCcc-CCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCch
Confidence 333221100 00 012 12111012357889999999999997432 22 1345578888887653 54322211
Q ss_pred -c----------ccCCCCCCccccccccCCCCCeEEEEeCcccC
Q 045656 393 -G----------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRAL 425 (802)
Q Consensus 393 -~----------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~ 425 (802)
. ...+. +.-|-++-+-++|+|.+|+=+....
T Consensus 225 ~~~~~~~~~~~~~~~~~--g~GH~~~~~~~~g~~~~~yH~~~~~ 266 (288)
T cd08998 225 LNGGGTLYLLSSNGGYV--GPGHNSVFTDDDGKDYLVYHYYDAN 266 (288)
T ss_pred hhCCCcceeeccCCeEE--cCCCCEEEECCCCCEEEEEEEEeCC
Confidence 0 11121 2334466666777888887665543
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=116.61 Aligned_cols=178 Identities=22% Similarity=0.310 Sum_probs=122.5
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eee------cCCCceeeeEEEEeC-CEEEE
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IAL------DEDWHLSFPYVFDYH-GQIYM 255 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvL------de~~HLSyP~VF~~d-G~iYM 255 (802)
..+| |.++..+ |++||||+..........|++++|.|....|+..+ +++ .+..+...|.||+++ |++||
T Consensus 59 ~~wa-p~v~~~~~g~~~l~yt~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~ 137 (286)
T cd08772 59 GIWA-PSIVYIENGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYL 137 (286)
T ss_pred cEec-ceEEEcCCCCEEEEEEeecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEE
Confidence 3555 9999888 99999999876434567899999988555676543 122 134678999999998 99999
Q ss_pred EeCCC---CCCeeEEEEeccCCcCceeeeec--c-----CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 256 MPESR---AKGEVRLYRAVNFPLEWKLEKII--M-----KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 256 iPEss---~sg~l~LYra~~FP~~We~~~~L--l-----~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+=.+. ..+.|.+++..+. ..|+..... . ....+.|.+++++|+||||+|...+......+.+.++++++
T Consensus 138 ~~~~~~~~~~~~i~~~~s~d~-~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 138 VFGSGDHHNFGGIFLYESDDD-TTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred EEccccCCCCCeEEEEEcCCC-CCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 96543 3577889988764 678765431 1 12589999999999999999975321113456888999999
Q ss_pred CCCCCeeCCCCCeee----CCCCCCcccCCccEEE-CCeEEEEcc
Q 045656 326 PFGPWKPHKKNPIYN----GDKSLGARNGGRPFVY-DGNLYRVGQ 365 (802)
Q Consensus 326 plGPW~~hp~NPI~~----~~~~~~aR~GG~vF~~-dGkLyRp~Q 365 (802)
++|||++...+|+.. .......-.++.+|.. +|+.|++.-
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (286)
T cd08772 217 DTGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDAGGRVVLVYH 261 (286)
T ss_pred CCCCcccCCCCCCccccccccCCCCCCCccEEEECCCCCEEEEEE
Confidence 999999887765321 1111112233455554 477766544
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=116.17 Aligned_cols=192 Identities=17% Similarity=0.252 Sum_probs=126.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeec-cCCCceEEEEEEeC---CCCCceEeeeee-cCCCceeeeEEEEeCCEEEEEeC-
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNS-ITMQGDIGVAKSVD---KGATWQQLGIAL-DEDWHLSFPYVFDYHGQIYMMPE- 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~-~~~~G~I~va~S~D---~g~tw~~~gvvL-de~~HLSyP~VF~~dG~iYMiPE- 258 (802)
..++| |-+...+|++||||..... ......|.++++++ ....|++.+.++ +....-..|.||.++|+.||+=-
T Consensus 53 ~~~WA-P~i~~~~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~ddG~~Yl~~~~ 131 (288)
T cd08980 53 GNLWA-PELHYIDGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEHNGQLYFVWSG 131 (288)
T ss_pred ccEEC-ceEEEECCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEECCEEEEEEEc
Confidence 46899 9999999999999987543 12345788888764 356899988654 33556789999999999999942
Q ss_pred --CCC--CCeeEEEEeccCCcCceeeeecc-C----------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEE
Q 045656 259 --SRA--KGEVRLYRAVNFPLEWKLEKIIM-K----------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYS 323 (802)
Q Consensus 259 --ss~--sg~l~LYra~~FP~~We~~~~Ll-~----------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~A 323 (802)
... ...+.+-+..+ +..+.-+.+.+ . ...+.|.+++++|+||||||.. .+. ...+.+.++++
T Consensus 132 ~~~~~~~~~~i~~~~l~~-~~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~-~~~-~~~Y~v~~a~~ 208 (288)
T cd08980 132 WEGRTNGNQNLYIAKMSN-PWTLTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSAS-GSW-TPDYCLGLLTA 208 (288)
T ss_pred cCCCCCCCccEEEEECCC-CCccCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECC-CCC-CCCCEEEEEEE
Confidence 211 12333333222 22332122211 1 1379999999999999999974 221 24567778887
Q ss_pred cC---CCCC--CeeCCCCCeeeCCC--CCCcccCCccEEE-CCe-EEEEcccCC----CCCCceEEEEEec
Q 045656 324 SS---PFGP--WKPHKKNPIYNGDK--SLGARNGGRPFVY-DGN-LYRVGQDCA----ESYGRRVRTFKVE 381 (802)
Q Consensus 324 dS---plGP--W~~hp~NPI~~~~~--~~~aR~GG~vF~~-dGk-LyRp~QdC~----~~YG~~L~l~~It 381 (802)
++ |++| |++.+ +||+.... ......++.+|.. +|+ .|+..+... ...+|.+.+.+|.
T Consensus 209 ~~~~~~~~~~~~~~~~-~pil~~~~~~~~~g~GH~~iv~~~~G~~~~~~yH~~~~~~~~~~~R~~~i~~v~ 278 (288)
T cd08980 209 DGGADLLDPASWTKSP-TPVFQSSPENGVYGPGHNSFTKSPDGTEDWIVYHARPYPNGCGGNRHTRAQKVT 278 (288)
T ss_pred cCCCCCCChhhCcCCC-CCceecCCCCccCcCCccceEECCCCCEEEEEEccccCCCCCCCCceEEEEEEE
Confidence 64 4776 88765 79887542 2222344555654 787 898888653 2567888888875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-10 Score=116.36 Aligned_cols=222 Identities=16% Similarity=0.138 Sum_probs=142.3
Q ss_pred eCeeeEEECCEEEEEEEeeeccCC-----CceEEEEEEeCCCCCceEeeeeecC-------CCceeeeEEEEeCCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITM-----QGDIGVAKSVDKGATWQQLGIALDE-------DWHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~-----~G~I~va~S~D~g~tw~~~gvvLde-------~~HLSyP~VF~~dG~iYMi 256 (802)
|||.+++.++++|+|.+....... ...|.+++|.| +.+|+..+.||+. ...++.|.|..++|++||+
T Consensus 1 ~DP~~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~D-l~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~~g~yy~y 79 (274)
T cd08990 1 ADPAAHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPD-LVNWTDHGVILSVTDFPAWAKGQAWAPDVVEKNGKYYLY 79 (274)
T ss_pred CCCCcEEECCEEEEEeCCCCCCCCCCccccceEEEEECCC-CCCcEECcccccCCCCCccccCCcCcCeEEEECCEEEEE
Confidence 799999999999999987533211 12489999888 9999999988852 2458999999999999999
Q ss_pred eCCC---CCCeeEEEEeccCCc-Cceeeee--cc-----CCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 257 PESR---AKGEVRLYRAVNFPL-EWKLEKI--IM-----KKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 257 PEss---~sg~l~LYra~~FP~-~We~~~~--Ll-----~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
--.. ....+-+..+.+ |. .|+.... ++ ....+||++|.. ||++||+++.. ..+.+..-+
T Consensus 80 y~~~~~~~~~~igva~s~~-p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--------~~~~~~~l~ 150 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDS-PAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG--------LGLRVAKLK 150 (274)
T ss_pred EEeecCCCceEEEEEEeCC-CCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc--------CCEEEEEeC
Confidence 4332 234555666543 54 5876542 22 235899999998 69999999641 234433323
Q ss_pred CCCCCCeeCCCCCeee----CCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccC-CccceEEeccccCCCC
Q 045656 325 SPFGPWKPHKKNPIYN----GDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEIL-TKNEYKELEGRNAWNG 399 (802)
Q Consensus 325 SplGPW~~hp~NPI~~----~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~L-t~~~y~E~~~~~~w~~ 399 (802)
.-+..|+..+. .|.. .........|..+|+.+|++|++.=.+. ...+...+.+.+ .|++++...-. .-..
T Consensus 151 ~d~~~~~~~~~-~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~---~~~~~~a~s~~p~GP~~~~g~~~~-~~~~ 225 (274)
T cd08990 151 PDMLSLKGEPV-EIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD---PEEIAYATSDSPLGPFTYRGVILD-PPVN 225 (274)
T ss_pred ccccccCCCcE-EEEeccccCCCCCCcccceeEEEECCEEEEEEECCC---CcEEEEEEcCCCCCCcccCcEEec-CCCC
Confidence 22445654321 2221 0111234678999999999999865543 345666555554 36554332211 1112
Q ss_pred CCccccccccCCCCCeEEEEeCcccCC
Q 045656 400 ARYHHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 400 ~~~Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
.+..|-++-+- +|+|+++..+.+...
T Consensus 226 ~g~gh~~~~~~-~g~~y~~yh~~~~~~ 251 (274)
T cd08990 226 GGTNHGSIVEF-KGQWYLFYHRATLSG 251 (274)
T ss_pred CCCCCCeEEEE-CCeEEEEEECCcCCC
Confidence 34556566654 478999999988654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=117.93 Aligned_cols=237 Identities=17% Similarity=0.214 Sum_probs=144.7
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccC-----------CCceEEEEEEeCCCCCceEeeeeec-C
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSIT-----------MQGDIGVAKSVDKGATWQQLGIALD-E 237 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~-----------~~G~I~va~S~D~g~tw~~~gvvLd-e 237 (802)
||||. ..|.|||++++.++++|+|.+.-.... .-..|.+++|.| +.+|+..+.||+ .
T Consensus 1 NPi~~----------~~~~aDP~~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~D-L~~W~~~g~v~~~~ 69 (311)
T cd09003 1 NPIID----------HRYGADPTAVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDD-MVNWTDHGEIFVPN 69 (311)
T ss_pred CCccC----------CCccCCCCeEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCC-CCCcEEcccccCcC
Confidence 78876 358899999999999999998743211 012599999877 899999999986 2
Q ss_pred ---C--CceeeeEEEEeC----CEEEEEeCCCCCCeeEEEEeccCCc-Cceee--eeccCC---------CccCCEEEEE
Q 045656 238 ---D--WHLSFPYVFDYH----GQIYMMPESRAKGEVRLYRAVNFPL-EWKLE--KIIMKK---------PLVDPFMINH 296 (802)
Q Consensus 238 ---~--~HLSyP~VF~~d----G~iYMiPEss~sg~l~LYra~~FP~-~We~~--~~Ll~~---------~~vDatI~~~ 296 (802)
+ .++|+|.|++++ |++||+-... ...+-+..+.+ |. .|+.. +.|+.. ..+||++|..
T Consensus 70 ~~~~w~~~~WAP~v~~~~~~~~gkyylyy~~~-~~~igva~Sds-P~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~D 147 (311)
T cd09003 70 GIAKWAGNSWAPSIAVKKINGKGKFYLYFANG-GGGIGVLTADS-PVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVD 147 (311)
T ss_pred CCCCcccccCCCceEEeccCCCCEEEEEEecC-CCeEEEEEcCC-CCCCcccCCCCeeecCCCCCccCCccccCCCeEEC
Confidence 2 368999999998 9999996432 33466666544 54 68754 223321 1589999998
Q ss_pred -CCEEEEEEeCCCCCC-CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcc-c-C----C
Q 045656 297 -DGQYWLFGSDHSGFG-TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQ-D-C----A 368 (802)
Q Consensus 297 -dG~wwLF~S~~~~~g-~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Q-d-C----~ 368 (802)
||++||+++.....+ ......+.+..=+ .........++....+ ....|..+|+++|++|+..= . | .
T Consensus 148 dDG~~Yl~~g~~~~~~~~~~~~~i~i~~l~---~D~~~~~g~~~~i~~~--~~~Egp~~~K~~G~YYL~ys~~~~~~~~~ 222 (311)
T cd09003 148 DDGQGYLYFGGGVPGGRWANPNTARVIKLG---DDMISVDGSAVTIDAP--YFFEASGLHKINGTYYYSYCTNFGGRDPG 222 (311)
T ss_pred CCCCEEEEECCccCCCccccCCCEEEEEeC---CCceeccCCceEccCC--CceEeeeEEEECCEEEEEEeCCCCccCCC
Confidence 899999996421100 0111244444322 1122222233333221 35789999999999998542 2 2 0
Q ss_pred CCCCceEEEEEeccC-CccceEEec-c-ccCC-CCCCc-cccccccCCCCCeEEEEeCcccCC
Q 045656 369 ESYGRRVRTFKVEIL-TKNEYKELE-G-RNAW-NGARY-HHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 369 ~~YG~~L~l~~It~L-t~~~y~E~~-~-~~~w-~~~~~-Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
......|...+.+.+ -|++++... . .... .-.+. |+ ++-+. +|+|.+|+=+.+.+.
T Consensus 223 ~~~~y~v~y~~s~~~~GP~~~~g~il~~~~~~~~~~g~gH~-s~~~~-~g~~y~vyH~~~~~~ 283 (311)
T cd09003 223 KPPPGRIAYMTSKNPMGPFTYKGIILKNPGAFFGNGGNNHH-SIFEF-KGKWYIAYHARTLAK 283 (311)
T ss_pred CCCceeEEEEEcCCCCCCcccCCEeccCCccccCCccCCCc-cEEEe-CCeEEEEEeCCcCCc
Confidence 123445555555544 466553221 1 1101 11123 55 66654 678898987777653
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=115.17 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=137.0
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------CceeeeEEEEeCCEEEEEeCCC--
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------WHLSFPYVFDYHGQIYMMPESR-- 260 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSyP~VF~~dG~iYMiPEss-- 260 (802)
|||++++.++++|||++.... ...|.+++|.| +.+|+..+.++..+ ..++.|.|+..+|++||+--..
T Consensus 1 ~DP~v~~~~g~yyl~~t~~~~---~~~i~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~ys~~~~ 76 (294)
T cd08991 1 ADPFVLRYNGKYYAYGTGGAD---GRGFAVYSSPD-LVDWKLHGGALLALDDDWGRRGFWAPEVYYYNGKFYMYYSANDR 76 (294)
T ss_pred CCCeEEEECCEEEEEEeCCCC---CCeeEEEECCC-CCCceECCccccCCCCCccCCcEEccEEEEECCEEEEEEEeccC
Confidence 799999999999999987543 23589999877 88999999877543 3589999999999999994322
Q ss_pred --CCCeeEEEEeccCCc-Cceeee-eccC--CCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEE-EEcCCC---CC
Q 045656 261 --AKGEVRLYRAVNFPL-EWKLEK-IIMK--KPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIW-YSSSPF---GP 329 (802)
Q Consensus 261 --~sg~l~LYra~~FP~-~We~~~-~Ll~--~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~-~AdSpl---GP 329 (802)
....+.+..+.+ |. .|+... .++. ...+|+++|..+ |++||+++.....+ ....+.+. .+.+.+ +.
T Consensus 77 ~~~~~~i~~a~s~~-p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~~--~~~~i~~~~l~~d~~~~~~~ 153 (294)
T cd08991 77 DEKTEHIGVAVSDS-PLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGN--RVSDIYGTELVDDKLSIKTE 153 (294)
T ss_pred CCCcceEEEEEeCC-CCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCCC--cccceEEEEEccceeeeccc
Confidence 334555555433 43 465543 2332 358999999885 99999997531111 11223322 222221 11
Q ss_pred CeeCCCCCeee------------C-CCCCCcccCCccEEECCeEEEEccc-CCCCCCceEEEEEecc-CCccceEE-ec-
Q 045656 330 WKPHKKNPIYN------------G-DKSLGARNGGRPFVYDGNLYRVGQD-CAESYGRRVRTFKVEI-LTKNEYKE-LE- 392 (802)
Q Consensus 330 W~~hp~NPI~~------------~-~~~~~aR~GG~vF~~dGkLyRp~Qd-C~~~YG~~L~l~~It~-Lt~~~y~E-~~- 392 (802)
.+... .|+.. . ........|..+|+.+|++|++.-. +...-..++.+.+.+. +.+++... .+
T Consensus 154 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl 232 (294)
T cd08991 154 LVGPP-IPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPI 232 (294)
T ss_pred eeecc-ccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEecCCCce
Confidence 11111 11110 0 0012246778889999999998753 2112223566666664 35654431 11
Q ss_pred --cccCCCCCCccccccccCCC-CCeEEEEeCcccCC
Q 045656 393 --GRNAWNGARYHHLDAQQLSS-GEWIAVMDGDRALS 426 (802)
Q Consensus 393 --~~~~w~~~~~Hhld~~~l~~-g~~i~vvDG~r~~~ 426 (802)
......-.+..|-++-+-++ ++|..|.=+...+.
T Consensus 233 ~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~ 269 (294)
T cd08991 233 LRRNGDKGVEGTGHNSVVKSPDGGELYIVYHAHNATD 269 (294)
T ss_pred EeeCCCCceEeCCCCceEECCCCCEEEEEEeeecCCC
Confidence 12222223456657777777 56777777765543
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=117.32 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=124.8
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeecCCCceeeeEEEEe-CCEEEEEeC---
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALDEDWHLSFPYVFDY-HGQIYMMPE--- 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLde~~HLSyP~VF~~-dG~iYMiPE--- 258 (802)
..++| |.+...+|++||||..-+.......|+++++++-...|+..+ .+...++....|.+|.+ ||+.||+=.
T Consensus 66 ~~~WA-P~v~~~~G~yyly~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~ 144 (291)
T cd08981 66 DNFWA-PEVHEYKGRYYMFATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEW 144 (291)
T ss_pred ccccC-CeeeeeCCEEEEEEEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEecc
Confidence 35788 999999999999998754332334688999877666788764 34455667889999877 789999832
Q ss_pred -CCCCCeeEEEEeccCC---------------cCceeeee-cc---CC-CccCCEEEEE-CCEEEEEEeCCCCCCCCCCC
Q 045656 259 -SRAKGEVRLYRAVNFP---------------LEWKLEKI-IM---KK-PLVDPFMINH-DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP---------------~~We~~~~-Ll---~~-~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~ 316 (802)
....+.|.+-+..+-- ..|+...- .. .. ..+.|.++++ +|+||||+|.. + ...+
T Consensus 145 ~~~~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~---~-~~~Y 220 (291)
T cd08981 145 VQVYDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSF---S-DGGY 220 (291)
T ss_pred cccCCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEec---C-CCCE
Confidence 1223444444432100 11221110 00 11 2588999995 89999999852 2 3456
Q ss_pred cEEEEEEcC--CCCCCeeCCCCCeeeCCCCCCcccCCccEE-ECCeEEEEcccCCCCCCceEEEEEec
Q 045656 317 QLEIWYSSS--PFGPWKPHKKNPIYNGDKSLGARNGGRPFV-YDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 317 ~L~i~~AdS--plGPW~~hp~NPI~~~~~~~~aR~GG~vF~-~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
.+.+++|++ |+|||++.+ +||+... -.+|.+|. .+|+.|.+.-...+.-|+.+.+.+|.
T Consensus 221 ~~~~~rs~s~~~~GPy~~~~-~pi~~~~-----~GH~s~v~~~~G~~~~vyH~~~~~~~~~~~~~~~~ 282 (291)
T cd08981 221 AQGVARSESGTLLGPWVQEP-EPLISDD-----GGHGMLFRTFDGRLMLSLHTPNKHPDERPIFIEVD 282 (291)
T ss_pred EEEEEEcCCCCccCCcEECC-CcccCCC-----CCCCeeEEcCCCCEEEEEECCCCCCCeeeEEEEEe
Confidence 888999987 999999866 6876531 22366664 48998887766666777788888885
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=115.25 Aligned_cols=177 Identities=17% Similarity=0.208 Sum_probs=118.7
Q ss_pred CceeeCeeeEEE--CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCC
Q 045656 185 SNFVADPFFYLQ--GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRA 261 (802)
Q Consensus 185 ~~F~ADPFll~~--~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~ 261 (802)
...+| |-++.. ++++||||...+.......|+||+|++-...|+..+..+........|.||.+ ||+.||+=.+..
T Consensus 63 ~~~wa-P~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~ 141 (265)
T cd08985 63 RIIER-PKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRD 141 (265)
T ss_pred cEEEC-CeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCC
Confidence 45677 888864 58999999986543456789999998766789987765544556789999987 579999976655
Q ss_pred CCeeEEEEeccCCcCceeeee-ccC-CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCee
Q 045656 262 KGEVRLYRAVNFPLEWKLEKI-IMK-KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 262 sg~l~LYra~~FP~~We~~~~-Ll~-~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
...+.+.+..+--..+.-+.. +.. ...+.|.|++++|+||||+|... +. ......+++|++++|||+....-++.
T Consensus 142 ~~~i~i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t--~~-~~~~~~y~~s~s~~GP~~~~~~~~~~ 218 (265)
T cd08985 142 NSDLYIYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLT--GW-NPNDARYATATSILGPWTDLGNPGPG 218 (265)
T ss_pred CCceEEEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCC--Cc-cCCceEEEEecCCCCCccccCcCCCC
Confidence 677888887542233332222 222 35899999999999999998732 21 22367899999999999975422221
Q ss_pred eCCCCCCcccCCccEEECC---eEEEEcccC
Q 045656 340 NGDKSLGARNGGRPFVYDG---NLYRVGQDC 367 (802)
Q Consensus 340 ~~~~~~~aR~GG~vF~~dG---kLyRp~QdC 367 (802)
.+ ....+ -.+-++...| +.|+..-|.
T Consensus 219 ~~-~t~~s-q~~~v~~~~g~~~~~~~~~~dr 247 (265)
T cd08985 219 GS-TTYGS-QTTFVLPVPGSKQTTYIYMGDR 247 (265)
T ss_pred CC-cEECC-CcceEEEeCCCCCCEEEEEEcc
Confidence 11 11111 1233344454 666666654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=112.08 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=134.1
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee--ecC------CCceeeeEEEEeCCEEEEEeCCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA--LDE------DWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv--Lde------~~HLSyP~VF~~dG~iYMiPEss 260 (802)
|||++++.++++|++++... ..|.+++|.| +.+|+..+.+ ++. ..++|+|.|+.++|++||+--..
T Consensus 1 ~DP~v~~~~d~yY~~~T~~~-----~~~~i~~S~d-l~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~~~g~yylyys~~ 74 (288)
T cd08980 1 ADPWVIRHDGYYYFTATTGE-----DRIELRRSDT-LAGLATAESKVVWTPPDSGPYSGNLWAPELHYIDGKWYIYFAAG 74 (288)
T ss_pred CCCeEEEECCEEEEEEEeCC-----CcEEEEecCC-hhHhhcCCcEEEecCCCCCCccccEECceEEEECCEEEEEEEcc
Confidence 79999999999999998742 5699999877 8899876532 222 13699999999999999994322
Q ss_pred -----CCCeeEEEEecc--CC-cCceeeeecc---CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 261 -----AKGEVRLYRAVN--FP-LEWKLEKIIM---KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 261 -----~sg~l~LYra~~--FP-~~We~~~~Ll---~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
...++.+..+.+ -| ..|+....+. +...+||++++.+|++||+++.... +......+.+..-++ +
T Consensus 75 ~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~ddG~~Yl~~~~~~~-~~~~~~~i~~~~l~~---~ 150 (288)
T cd08980 75 DGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEHNGQLYFVWSGWEG-RTNGNQNLYIAKMSN---P 150 (288)
T ss_pred CCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEECCEEEEEEEccCC-CCCCCccEEEEECCC---C
Confidence 223444455543 13 4698765443 2358999999999999999975321 111122344333222 2
Q ss_pred CeeCCCCCeeeCCCC-------CCcccCCccEEECCeEEEEccc--C-CCCCCceEEEEEecc----CCccceEEec---
Q 045656 330 WKPHKKNPIYNGDKS-------LGARNGGRPFVYDGNLYRVGQD--C-AESYGRRVRTFKVEI----LTKNEYKELE--- 392 (802)
Q Consensus 330 W~~hp~NPI~~~~~~-------~~aR~GG~vF~~dGkLyRp~Qd--C-~~~YG~~L~l~~It~----Lt~~~y~E~~--- 392 (802)
++.. ..|++...+. .....|..+|+.+|++|+..=. | ...| .+.+.+++. +.+..++...
T Consensus 151 ~~~~-g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y--~v~~a~~~~~~~~~~~~~~~~~~~pi 227 (288)
T cd08980 151 WTLT-GPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDY--CLGLLTADGGADLLDPASWTKSPTPV 227 (288)
T ss_pred CccC-CcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCC--EEEEEEEcCCCCCCChhhCcCCCCCc
Confidence 3221 1222221110 0235788889999999986532 2 3444 555555542 3343333211
Q ss_pred --cc--cCCCCCCccccccccCCCCC-eEEEEeCcccC
Q 045656 393 --GR--NAWNGARYHHLDAQQLSSGE-WIAVMDGDRAL 425 (802)
Q Consensus 393 --~~--~~w~~~~~Hhld~~~l~~g~-~i~vvDG~r~~ 425 (802)
.. ..+. +..|-++-+-++|+ |.+|+=+.+.+
T Consensus 228 l~~~~~~~~~--g~GH~~iv~~~~G~~~~~~yH~~~~~ 263 (288)
T cd08980 228 FQSSPENGVY--GPGHNSFTKSPDGTEDWIVYHARPYP 263 (288)
T ss_pred eecCCCCccC--cCCccceEECCCCCEEEEEEccccCC
Confidence 11 1333 34565777767887 88887666543
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=114.63 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=135.7
Q ss_pred eeCeeeEEE-CCEEEEEEEeeecc-------CCCceEEEEEEeCCCCCceEeeeeecCC-----------------Ccee
Q 045656 188 VADPFFYLQ-GNDLYLFYETKNSI-------TMQGDIGVAKSVDKGATWQQLGIALDED-----------------WHLS 242 (802)
Q Consensus 188 ~ADPFll~~-~g~~ylF~E~~~~~-------~~~G~I~va~S~D~g~tw~~~gvvLde~-----------------~HLS 242 (802)
+.||++++. ++.|||+.|..... .....|.+++|.| +.+|+..+.|++.. ..+|
T Consensus 2 ~rDP~v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~D-Lv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKD-LKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEEecCCCcEEEEEccCCccccccccccCCCceEEEeCcc-ccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 689999977 56999999976432 1235799999988 99999999887532 2589
Q ss_pred eeEEEEeCCEEEEEeCCC--C--CCeeEEEEeccCCc-Cceeeeec-cCCCccCCEEEEE-CCEEEEEEeCCCCCCCCCC
Q 045656 243 FPYVFDYHGQIYMMPESR--A--KGEVRLYRAVNFPL-EWKLEKII-MKKPLVDPFMINH-DGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss--~--sg~l~LYra~~FP~-~We~~~~L-l~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n 315 (802)
+|.|+.++|++||+--.. . ...+-+..+ +-|. .|+..... .....+|+++|.. ||++||++.... -.
T Consensus 81 AP~v~~~~g~yyl~~s~~~~~~~~~~i~va~a-~~p~Gp~~~~~~~~~~~~~iD~~~f~D~DG~~Yl~~~~~~--i~--- 154 (269)
T cd08986 81 APELHYIKGRWYLVACMNNPGYGGSSILLSTS-GKIEGPYKHITGNKPLFPGIDPSLFEDDDGKVYLVWHNTL--IA--- 154 (269)
T ss_pred CceEEEECCEEEEEEEccCCCCCceEEEEEeC-CCCCCCcEeccCCCCCCCccCCceEEcCCCCEEEEeeCCc--eE---
Confidence 999999999999994221 1 122333333 3343 57653221 1124799999998 699999985420 00
Q ss_pred CcEEEEEEcCCCCCCeeCCCCCeeeCCC-----CCCcccCCccEEECCeEEEEc--ccC--CCCCCceEEEEEeccCC-c
Q 045656 316 GQLEIWYSSSPFGPWKPHKKNPIYNGDK-----SLGARNGGRPFVYDGNLYRVG--QDC--AESYGRRVRTFKVEILT-K 385 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp~NPI~~~~~-----~~~aR~GG~vF~~dGkLyRp~--QdC--~~~YG~~L~l~~It~Lt-~ 385 (802)
+| +++.+ ... ..|+..... ......|..+|+.+|++|++. ..| ....+..+.+.+.+.++ |
T Consensus 155 -~l----~~d~~-~~~---~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GP 225 (269)
T cd08986 155 -RL----KDDLS-GLA---GDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGP 225 (269)
T ss_pred -ec----cCccc-ccc---CCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCC
Confidence 01 11111 111 112111100 112578899999999999985 333 12456678888888775 5
Q ss_pred cceEEeccccCCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 386 NEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 386 ~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
.+.++. .+ .+.+|-++-+.++|+|.+++=+..
T Consensus 226 y~~~~~----~~--~g~Gh~~~v~~~~G~~~~~~h~~~ 257 (269)
T cd08986 226 YGARYF----AG--RFLGHNTPFQDLDGRWWCTAFFNP 257 (269)
T ss_pred ccccCc----cc--cccCCCceEECCCCCEEEEEEcCC
Confidence 443322 12 345566888888999999988776
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-09 Score=114.42 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=135.9
Q ss_pred ceeeCeeeEEE--CCEEEEEEEeeecc--CCCceEEEEEEeCCCCCceEeeeeecCC------CceeeeEEEEeCCEEEE
Q 045656 186 NFVADPFFYLQ--GNDLYLFYETKNSI--TMQGDIGVAKSVDKGATWQQLGIALDED------WHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 186 ~F~ADPFll~~--~g~~ylF~E~~~~~--~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSyP~VF~~dG~iYM 255 (802)
..++||+++.. +++||+|.+..... .....|.+.+|+| +.+|+..+.|++.+ ..+|+|.|++++|++||
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~G~yyl 82 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKD-LKDWEGPYPVFRPPDDFWADDNFWAPEVHEYKGRYYM 82 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCC-hhcccccceeeccCCCcCccccccCCeeeeeCCEEEE
Confidence 36799999987 99999999985321 1123589999987 89999999888532 35899999999999999
Q ss_pred EeCCC----CCCeeEEEEeccCCc-Cceeee--eccC--CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 256 MPESR----AKGEVRLYRAVNFPL-EWKLEK--IIMK--KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 256 iPEss----~sg~l~LYra~~FP~-~We~~~--~Ll~--~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+-..+ ....+.+..+.+ |. .|+... .+.. ...+||++|.. ||++||++... .....+..+.+..
T Consensus 83 y~s~~~~~~~~~~~~va~s~~-p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~--~~~~~~~~i~~~e--- 156 (291)
T cd08981 83 FATFHNPGGERRGTAILVSDS-PEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHE--WVQVYDGTIEAVR--- 156 (291)
T ss_pred EEEeccCCCceeeEEEEECCC-CCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEec--ccccCCCCEEEEE---
Confidence 94222 123455666543 55 477542 2223 25899999988 79999988531 0111123444333
Q ss_pred CCCCCeeCCCCCe--eeCC--------------CCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc--C-Cc
Q 045656 326 PFGPWKPHKKNPI--YNGD--------------KSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI--L-TK 385 (802)
Q Consensus 326 plGPW~~hp~NPI--~~~~--------------~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~--L-t~ 385 (802)
+..+++.-...|+ +... ......+|..+|+. +|++|+..=-+. .-+..+.+.+.+. + .|
T Consensus 157 L~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~-~~~Y~~~~~rs~s~~~~GP 235 (291)
T cd08981 157 LSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFS-DGGYAQGVARSESGTLLGP 235 (291)
T ss_pred eCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecC-CCCEEEEEEEcCCCCccCC
Confidence 1122221111121 1100 00113466677774 788887542221 3345667777664 3 45
Q ss_pred cceEEeccccCCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 386 NEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 386 ~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
|++... + ....+..|-++-+-++|+|.+|+=+..
T Consensus 236 --y~~~~~-p-i~~~~~GH~s~v~~~~G~~~~vyH~~~ 269 (291)
T cd08981 236 --WVQEPE-P-LISDDGGHGMLFRTFDGRLMLSLHTPN 269 (291)
T ss_pred --cEECCC-c-ccCCCCCCCeeEEcCCCCEEEEEECCC
Confidence 433321 1 123356676877778888888886663
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=113.90 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=108.3
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKG 263 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg 263 (802)
..++| |.+...+|++||||...+.......|.++++++....|+..... +.......|.||.+ ||+.||+-.+..
T Consensus 77 ~~~WA-P~v~~~~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~-~~~~~~iD~~~f~D~DG~~Yl~~~~~~-- 152 (269)
T cd08986 77 NAVWA-PELHYIKGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGN-KPLFPGIDPSLFEDDDGKVYLVWHNTL-- 152 (269)
T ss_pred CCcCC-ceEEEECCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCC-CCCCCccCCceEEcCCCCEEEEeeCCc--
Confidence 35788 99999999999999875443345679999877655678865321 12245788999877 589999964321
Q ss_pred eeEEEEeccCCcCceeeee-cc-------C-CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCCCCCCeeC
Q 045656 264 EVRLYRAVNFPLEWKLEKI-IM-------K-KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 264 ~l~LYra~~FP~~We~~~~-Ll-------~-~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSplGPW~~h 333 (802)
+.+..+-.....-+.+ +. + ...++|.|++++|+||||+|..... +...++.+.+++|++++|||++.
T Consensus 153 ---i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~ 229 (269)
T cd08986 153 ---IARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGAR 229 (269)
T ss_pred ---eEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCcccc
Confidence 1121111011111111 11 1 2379999999999999999864221 22345578899999999999986
Q ss_pred CCCCeeeCCCCCCcccCCccEEE-CCeEEEEcc
Q 045656 334 KKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQ 365 (802)
Q Consensus 334 p~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~Q 365 (802)
+ +|+. .-.++.+|.. ||++|....
T Consensus 230 ~-~~~~-------g~Gh~~~v~~~~G~~~~~~h 254 (269)
T cd08986 230 Y-FAGR-------FLGHNTPFQDLDGRWWCTAF 254 (269)
T ss_pred C-cccc-------ccCCCceEECCCCCEEEEEE
Confidence 5 3421 1234567765 899987654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-09 Score=116.33 Aligned_cols=157 Identities=23% Similarity=0.345 Sum_probs=104.5
Q ss_pred ceeeCeeeE-EECCEEEEEEEeeecc-----CCCceEEEEEEeCCC---CCceEeeeeecC-------------------
Q 045656 186 NFVADPFFY-LQGNDLYLFYETKNSI-----TMQGDIGVAKSVDKG---ATWQQLGIALDE------------------- 237 (802)
Q Consensus 186 ~F~ADPFll-~~~g~~ylF~E~~~~~-----~~~G~I~va~S~D~g---~tw~~~gvvLde------------------- 237 (802)
..|+ +-.+ ..+++++|||+..... ...-+|+++++.+.. ..|+....+++.
T Consensus 70 g~wS-Gsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~ 148 (349)
T cd08997 70 REWS-GSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGD 148 (349)
T ss_pred CeEc-ceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEeccccccccccCc
Confidence 3445 4444 3459999999986321 222357777655410 122222222211
Q ss_pred CCceeeeEEEEeC--CEEEEEeCCCCC------------------------------CeeEEEEecc-CCcCceeeeecc
Q 045656 238 DWHLSFPYVFDYH--GQIYMMPESRAK------------------------------GEVRLYRAVN-FPLEWKLEKIIM 284 (802)
Q Consensus 238 ~~HLSyP~VF~~d--G~iYMiPEss~s------------------------------g~l~LYra~~-FP~~We~~~~Ll 284 (802)
.+++=.|+||+++ |++||+-|+... +.|-|.++.+ ...+||..+.|+
T Consensus 149 ~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~ 228 (349)
T cd08997 149 IKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLL 228 (349)
T ss_pred cCcccCCEEEecCCCCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcCccc
Confidence 4667889999998 999999775333 4455666542 236799888776
Q ss_pred CC-----CccCCEEEEECCEEEEEEeCCCC-CC--CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC
Q 045656 285 KK-----PLVDPFMINHDGQYWLFGSDHSG-FG--TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK 343 (802)
Q Consensus 285 ~~-----~~vDatI~~~dG~wwLF~S~~~~-~g--~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~ 343 (802)
+. ..++|.+|+++|+||||+|.... +. ...+..+..|+|++++|||++++.++++.+.+
T Consensus 229 ~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~~~g~vsdsl~GP~~~~n~sglvl~~p 295 (349)
T cd08997 229 EANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDGLYGFVSDSLRGPYKPLNGSGLVLGNP 295 (349)
T ss_pred cCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCcEEEEEeCCCCCCCccCCCCcceeCCC
Confidence 42 48999999999999999985321 11 11233577889999999999999999988753
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-09 Score=109.85 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=116.4
Q ss_pred EEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeec------cC
Q 045656 138 SIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNS------IT 211 (802)
Q Consensus 138 sig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~------~~ 211 (802)
.||++..++|.. | |-..++||....-.. ....-.-+|.++..+|++||||+.... ..
T Consensus 47 ~i~~A~S~~~~g--~-------------w~~~g~vl~~~~~~~--wd~~~~~~P~vi~~~g~yyl~Y~~~~~~~~~~~~~ 109 (291)
T cd08994 47 EIVHAVSDTPEG--P-------------YTFQEVVLPGRGGGY--WDARTTHNPTIKRFDGKYYLYYIGNTDPGPRPGHR 109 (291)
T ss_pred eEEEEEcCCCCC--C-------------cEEeeeEcCCCCCCc--ccCCCccCCeEEEECCEEEEEEEcccCCcccccCC
Confidence 389998888642 1 223455654221100 011234579999999999999997643 23
Q ss_pred CCceEEEEEEeCCCCCceE-eeeeecC------CCceeeeEEEEe-CCEEEEEeCCC------CCCeeEEEEeccCCcCc
Q 045656 212 MQGDIGVAKSVDKGATWQQ-LGIALDE------DWHLSFPYVFDY-HGQIYMMPESR------AKGEVRLYRAVNFPLEW 277 (802)
Q Consensus 212 ~~G~I~va~S~D~g~tw~~-~gvvLde------~~HLSyP~VF~~-dG~iYMiPEss------~sg~l~LYra~~FP~~W 277 (802)
.+..|+++.|.+....|+. .++||.. ..+.+.|.|+.. +|++||+-... ....+.|..+.+.-..|
T Consensus 110 ~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~ 189 (291)
T cd08994 110 NNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPY 189 (291)
T ss_pred CCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCC
Confidence 4678999998764568988 5677743 256899999998 89999996433 23455666665543568
Q ss_pred eeee-ecc-----CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 278 KLEK-IIM-----KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 278 e~~~-~Ll-----~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
+... ..+ ...++||.|++.+|+|||+++..........+.+.+|.|++.. .|+.++
T Consensus 190 ~~~~~~~v~~~~~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a~S~Dg~-~W~~~~ 251 (291)
T cd08994 190 TKVSGPPFIEPGDNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYFRSKDGI-HWKLAP 251 (291)
T ss_pred EECCCCccccCCCCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEEECCCCC-CceecC
Confidence 7754 222 2358999999999999999987422111123355555555433 898874
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >cd08988 GH43_ABN Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-09 Score=109.76 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=129.8
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------------CCceeeeEEEEeCCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------------DWHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------------~~HLSyP~VF~~dG~iYMi 256 (802)
|||++++.+++||||.+.. .|.+++|.| +.+|+..+.+|+. ...+|+|.|..++|++||+
T Consensus 1 ~DP~vi~~~~~YY~~~T~~-------g~~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yyly 72 (279)
T cd08988 1 HDPVIIKEGDTWYVFGTGP-------GITILSSKD-LVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQHNGKFYLY 72 (279)
T ss_pred CCCEEEEECCEEEEEEecC-------CEEEEECCC-cCCccccCccccCCCccccccCCCCCCCEecceEEEECCEEEEE
Confidence 7999999999999999862 588999987 8999999988852 1369999999999999998
Q ss_pred eCC--C--CCCeeEEEEeccC--Cc---CceeeeeccC------CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEE
Q 045656 257 PES--R--AKGEVRLYRAVNF--PL---EWKLEKIIMK------KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEI 320 (802)
Q Consensus 257 PEs--s--~sg~l~LYra~~F--P~---~We~~~~Ll~------~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i 320 (802)
--. . ....+-+..+.+. |+ .|+....++. ...+||++|.. ||++||++... ...+.+
T Consensus 73 ys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~-------~~gi~~ 145 (279)
T cd08988 73 YSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFGSF-------WGGIKL 145 (279)
T ss_pred EEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEeccc-------CCCEEE
Confidence 422 2 2234444444331 21 2653233332 24799999988 59999998541 123333
Q ss_pred EE-EcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEc--ccCC--CCCCceEEEEEeccCC-ccceEEec--
Q 045656 321 WY-SSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG--QDCA--ESYGRRVRTFKVEILT-KNEYKELE-- 392 (802)
Q Consensus 321 ~~-AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~--QdC~--~~YG~~L~l~~It~Lt-~~~y~E~~-- 392 (802)
.. .++.+.+=.+-....|...........|..+|+.+|++|++. ..|. ...+..+.+.+.+.+. |++.++..
T Consensus 146 ~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~~~~~p~ 225 (279)
T cd08988 146 FELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLDKTGRSM 225 (279)
T ss_pred EEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCCCCCCCc
Confidence 22 111111100000111222211123568899999999999965 2242 2345578888888774 54443322
Q ss_pred -c---------ccCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 393 -G---------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 393 -~---------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
. ...|.+.+ |+ ++-+= .++|.+|.=+...
T Consensus 226 ~~~~~~~~~~~~~~~~g~G-H~-~v~~~-~g~~~~~yH~~~~ 264 (279)
T cd08988 226 LQGGGTILDKGNDRWVGPG-HN-SAYTD-DGKDYLVLHAYDA 264 (279)
T ss_pred ccCCceEEEcCCCcEEcCC-CC-EEEeC-CCCEEEEEEEeeC
Confidence 1 11122222 33 55443 3677777766554
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla |
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-09 Score=109.39 Aligned_cols=184 Identities=16% Similarity=0.278 Sum_probs=120.8
Q ss_pred CeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeec--C----CCceeeeEEEEeCCEEEEEeCCC-
Q 045656 190 DPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALD--E----DWHLSFPYVFDYHGQIYMMPESR- 260 (802)
Q Consensus 190 DPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLd--e----~~HLSyP~VF~~dG~iYMiPEss- 260 (802)
||.++.++|++||||+.... ..+-.|++|+|.| +.+|+..+ +++. + ..++..|.|++.+|++||+--+.
T Consensus 2 nP~v~~~~G~y~l~y~~~~~-~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~~g~y~m~Yta~~ 79 (268)
T cd08993 2 NPAVVYDNGEFYLLYRAAGN-DGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKIDDTYYITYAARP 79 (268)
T ss_pred cCeEEEECCEEEEEEEEECC-CCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEECCEEEEEEEccC
Confidence 79999999999999987543 2467899999988 88998765 3334 1 36789999999999999996432
Q ss_pred ---CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE--ECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCC
Q 045656 261 ---AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN--HDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKK 335 (802)
Q Consensus 261 ---~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~--~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~ 335 (802)
...++.+++..++ .+|+.+...+.....|++++. .+|+|||+++... .+......+.+++|+++. .|+.|.
T Consensus 80 ~~~~~~~i~lA~S~D~-~~W~~~~~~~~~~~~d~~~~p~~~~g~y~m~~r~~~-~~~~~~~~I~lA~S~Dl~-~W~~~~- 155 (268)
T cd08993 80 NAPNGTRIGLATTKDF-ITFERLGTSLVPNNRDGILFPEKINGKYVMLHRPFE-YGGTSPPDMWLSFSPDLV-HWGNHR- 155 (268)
T ss_pred CCCCCcEEEEEEeCCc-ceEEEecccCCCCCCCEEEeeEEECCEEEEEEcccc-CCCCCCCcEEEEECCCcC-ccCCCe-
Confidence 3467888888775 789887654443356888885 5999999996431 111123466666666654 798664
Q ss_pred CCeeeCCC----CCCcccCCccEEE-CCeEEEEcccC----CCCCCceEEEEEec
Q 045656 336 NPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQDC----AESYGRRVRTFKVE 381 (802)
Q Consensus 336 NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~QdC----~~~YG~~L~l~~It 381 (802)
|++...+ ....-.|..++.. +|.| ++..-+ ...|--++.+...+
T Consensus 156 -~~~~~~~~~wd~~~ig~g~~pi~~~~g~l-~~yhg~~~~~~~~Y~~g~~lld~~ 208 (268)
T cd08993 156 -FVLSPRPNHWEQLKIGAGTPPIKTEEGWL-VLYHGVDQSCGSVYRLGAALLDLE 208 (268)
T ss_pred -EEecCCCCceeeceecCCCCCcCcCCCEE-EEEeccCCCCCcEEeeeEEEEccc
Confidence 6654311 1112233556644 5654 444322 24566666665443
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=107.99 Aligned_cols=170 Identities=17% Similarity=0.276 Sum_probs=116.9
Q ss_pred eCeeeEEECCEEEEEEEeeeccCC----CceEEEEEEeCCCCCceEeeeeecC------CCceeeeEEEEeCCEEEEEeC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITM----QGDIGVAKSVDKGATWQQLGIALDE------DWHLSFPYVFDYHGQIYMMPE 258 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~----~G~I~va~S~D~g~tw~~~gvvLde------~~HLSyP~VF~~dG~iYMiPE 258 (802)
|||-++..+|+|||||........ .-.+++++|.| +.+|++.+++|.. ...++.|.++.++|++||+--
T Consensus 1 ~d~~~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~D-lv~W~~~~~al~~~~~~~d~~g~~sgs~~~~~g~~~l~YT 79 (280)
T cd08995 1 GDPMPFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKD-LVNYEDHGEAIPRGGDEDDDDAIGTGSVIKGEGTYHAFYT 79 (280)
T ss_pred CCccceEECCEEEEEEEcCCCCCCcccCCceEEEEEccC-cCccEECcceecCCCCcccccCceEeEEEeeCCEEEEEEE
Confidence 699999999999999997655332 23499999988 9999999988854 245888999999999999943
Q ss_pred CC-----CCCeeEEEEeccCCcCceeee--eccC-------CCccCCEEEEEC--CEEEEEEeCCCCCCC-CCCCcEEEE
Q 045656 259 SR-----AKGEVRLYRAVNFPLEWKLEK--IIMK-------KPLVDPFMINHD--GQYWLFGSDHSGFGT-TQNGQLEIW 321 (802)
Q Consensus 259 ss-----~sg~l~LYra~~FP~~We~~~--~Ll~-------~~~vDatI~~~d--G~wwLF~S~~~~~g~-~~n~~L~i~ 321 (802)
.. ....+.+..+.+ +..|+... .+++ ....||.+++++ |+|||++......+. .....+.++
T Consensus 80 g~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~ 158 (280)
T cd08995 80 GHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALF 158 (280)
T ss_pred EECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEE
Confidence 21 223455655555 47898754 2343 136799999985 999999865321111 122356677
Q ss_pred EEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEc
Q 045656 322 YSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG 364 (802)
Q Consensus 322 ~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~ 364 (802)
.|++ +-.|+.+. ++.... ....-.+..+|..+|+.|++.
T Consensus 159 ~S~D-l~~W~~~~--~~~~~~-~~~~~E~P~l~~~~g~~~L~~ 197 (280)
T cd08995 159 TSKD-LKNWEYEE--PFYAPG-LYFMPECPDLFKMGDWWYLVY 197 (280)
T ss_pred EeCC-cCcceecC--ceecCC-CcceeecceEEEECCEEEEEE
Confidence 7665 44798763 554321 112346678899999998865
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=104.44 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=103.2
Q ss_pred eeeCeeeEEECCEEEEEEEeeecc-CCCceEEEEEEeCCCCCceEee--eeecC-----CCceeeeEEEEeC--CEEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSI-TMQGDIGVAKSVDKGATWQQLG--IALDE-----DWHLSFPYVFDYH--GQIYMM 256 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va~S~D~g~tw~~~g--vvLde-----~~HLSyP~VF~~d--G~iYMi 256 (802)
.++ |.+++.++++||||+..... .....|++|+|.| +.+|+..+ ++++. ..++..|.||.++ |++||+
T Consensus 62 ~~s-gs~~~~~g~~~l~YTg~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~ 139 (280)
T cd08995 62 IGT-GSVIKGEGTYHAFYTGHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWML 139 (280)
T ss_pred ceE-eEEEeeCCEEEEEEEEECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEE
Confidence 444 99999999999999986532 2345799999877 78998764 45542 2457899999875 999998
Q ss_pred e--CC-----CCCCeeEEEEeccCCcCceeeeeccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 257 P--ES-----RAKGEVRLYRAVNFPLEWKLEKIIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 257 P--Es-----s~sg~l~LYra~~FP~~We~~~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
= .. ...+.+.+|+..++ ..|+....+... ..+-|.+++++|+||||+|... ...+..++++++
T Consensus 140 ~g~~~~~~~~~~~g~i~~~~S~Dl-~~W~~~~~~~~~~~~~~~E~P~l~~~~g~~~L~~s~~~-----~~~~~~Y~~~~~ 213 (280)
T cd08995 140 LATRLLDGPYNRRGCIALFTSKDL-KNWEYEEPFYAPGLYFMPECPDLFKMGDWWYLVYSEFS-----ENRKTHYRVSKS 213 (280)
T ss_pred EEeccCCCCCCCCeEEEEEEeCCc-CcceecCceecCCCcceeecceEEEECCEEEEEEEecc-----CCCcEEEEEeCC
Confidence 3 22 34578889988775 689887655432 3788999999999999998742 234566778888
Q ss_pred CCCCCee
Q 045656 326 PFGPWKP 332 (802)
Q Consensus 326 plGPW~~ 332 (802)
+.|||+.
T Consensus 214 ~~g~~~~ 220 (280)
T cd08995 214 PFGPWRA 220 (280)
T ss_pred CCCCeEc
Confidence 8999864
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-08 Score=106.04 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=125.7
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec-------CCCceeeeEEE--EeCCEEEEE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD-------EDWHLSFPYVF--DYHGQIYMM 256 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd-------e~~HLSyP~VF--~~dG~iYMi 256 (802)
-.+|||+++.++|++|||.+.-+. .+...++.| ..+|+..+.|+. ..+-.++|.|| +.++++||+
T Consensus 22 ~~lkDPtiv~~nGkYyvYgT~~~~---~~~~s~~~S---f~~Ws~~g~A~q~~l~~~~~~~~fwAPqVfyf~pk~kwYL~ 95 (303)
T cd08987 22 VAIKDPTVVYYNGRYHVYATTADA---GNYGSMYFN---FTDWSQAASATQYYLQNGNMTGYRVAPQVFYFAPQNKWYLI 95 (303)
T ss_pred eeecCCeEEEECCEEEEEEccCCC---CCceeeeec---ccCHhHhccchhhcccCCCCCcccccCEEeeeccCCEEEEE
Confidence 368999999999999999997442 233456665 779988887764 35668999998 778999999
Q ss_pred eCCCCCCeeEEEEeccC---CcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC
Q 045656 257 PESRAKGEVRLYRAVNF---PLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP 326 (802)
Q Consensus 257 PEss~sg~l~LYra~~F---P~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp 326 (802)
-.. + ... |+..+- |.+|...+.|.+ ...||.+|+-.|++.|||.++ .|+ .||+|+-+
T Consensus 96 Yq~-~--~~~-yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~vI~Dd~~~YLff~~-------dnG--~iyra~~~ 162 (303)
T cd08987 96 YQW-W--PAA-YSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWVICDDTNCYLFFSD-------DNG--KLYRSSTT 162 (303)
T ss_pred Eec-C--ceE-EEeCCCCCCCCccCCCcccccCcccCCCCCccceeEEeCCCCEEEEEec-------CCC--eEEEEecc
Confidence 775 2 233 766544 568998887743 247999999999999999976 233 79999999
Q ss_pred CCCCeeCCCCCeeeCC--CCCCcccCCccEEECC--eEEEEcccC---CCCCCceEEEEEeccC-CccceE
Q 045656 327 FGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDG--NLYRVGQDC---AESYGRRVRTFKVEIL-TKNEYK 389 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dG--kLyRp~QdC---~~~YG~~L~l~~It~L-t~~~y~ 389 (802)
++.+..-..+++.... ....-=+|..|++.+| ++++++--- .+.|.++ .-.+.| -+|+-.
T Consensus 163 ~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs---~Ts~Sl~GpWt~~ 230 (303)
T cd08987 163 LGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRS---WTATSLDGPWTPL 230 (303)
T ss_pred hhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEE---EEcCCCCCCceec
Confidence 8866544444544432 1111225678888877 777765322 2356666 444555 366554
|
The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr |
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=103.61 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=104.0
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeec-cCCCceEEEEEEeCCCCCceEeeeee-----c-------CCCceeeeEEEEeC-
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNS-ITMQGDIGVAKSVDKGATWQQLGIAL-----D-------EDWHLSFPYVFDYH- 250 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~-~~~~G~I~va~S~D~g~tw~~~gvvL-----d-------e~~HLSyP~VF~~d- 250 (802)
..+.||.++..+ ++++|||+.... ......|++|+|.| +.+|+..+.++ + +..+...|.||+++
T Consensus 64 ~~~~~p~v~~~~dg~~~~~Yt~~~~~~~~~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~ 142 (276)
T cd08979 64 GGVWTPSVVRDPDGTYRMFYTGYDRPKGAVQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEE 142 (276)
T ss_pred CCeEcceEEEcCCCeEEEEEecccCCCCCcceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECC
Confidence 456789999888 999999998753 12346899999877 88998877543 1 23568899999998
Q ss_pred -CEEEEEeCCC---CCCeeEEEEeccCCcCceeeeec---cC----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEE
Q 045656 251 -GQIYMMPESR---AKGEVRLYRAVNFPLEWKLEKII---MK----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLE 319 (802)
Q Consensus 251 -G~iYMiPEss---~sg~l~LYra~~FP~~We~~~~L---l~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~ 319 (802)
|++||+-... ..+.|.++++.++ ..|+....+ .. ..+++|.+++.+|+||||++... ...+..
T Consensus 143 ~g~y~m~~~~~~~~~~~~i~~a~S~D~-~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~~~~-----~~~~~~ 216 (276)
T cd08979 143 GGGWRMYYGARDADERGAIGLATSPDL-IHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYSGRN-----EDAKTG 216 (276)
T ss_pred CCEEEEEEEeEccCCCcEEEEEECCCC-CcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEEecC-----ccCCcc
Confidence 9999995543 3588889998776 679876653 11 25899999999999999998742 122344
Q ss_pred EEEEcCCCCCCee
Q 045656 320 IWYSSSPFGPWKP 332 (802)
Q Consensus 320 i~~AdSplGPW~~ 332 (802)
++++..+.++|++
T Consensus 217 y~vg~~~~~~~~~ 229 (276)
T cd08979 217 YRVGTALFGPGRP 229 (276)
T ss_pred EEEEecccCCccc
Confidence 5556666777764
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-08 Score=105.83 Aligned_cols=143 Identities=23% Similarity=0.305 Sum_probs=105.3
Q ss_pred CceeeCeeeE--EECCEEEEEEEeeeccCCCceEEEEEEeCC--CCCceEeeeee-----cCCCceeeeEEEEeCCEEEE
Q 045656 185 SNFVADPFFY--LQGNDLYLFYETKNSITMQGDIGVAKSVDK--GATWQQLGIAL-----DEDWHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 185 ~~F~ADPFll--~~~g~~ylF~E~~~~~~~~G~I~va~S~D~--g~tw~~~gvvL-----de~~HLSyP~VF~~dG~iYM 255 (802)
..|+| |-++ ..+++|||+|.. +.+++++++|- -..|...++.. ..+.+-..++|+.+|++.||
T Consensus 76 ~~fwA-PqVfyf~pk~kwYL~Yq~-------~~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~vI~Dd~~~YL 147 (303)
T cd08987 76 GYRVA-PQVFYFAPQNKWYLIYQW-------WPAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWVICDDTNCYL 147 (303)
T ss_pred ccccc-CEEeeeccCCEEEEEEec-------CceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeEEeCCCCEEE
Confidence 45888 9999 778999999975 35788888773 36687766643 34556789999999999999
Q ss_pred EeCCCCCCeeEEEEec----cCCcCceeeeeccC-----CCccCCEEEEECC--EEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 256 MPESRAKGEVRLYRAV----NFPLEWKLEKIIMK-----KPLVDPFMINHDG--QYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 256 iPEss~sg~l~LYra~----~FP~~We~~~~Ll~-----~~~vDatI~~~dG--~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
+--. .+| .|||+. +||..-.-..++++ +-.|.+.|++++| +|+|+++.+. +. ...+-.+ |+|+
T Consensus 148 ff~~-dnG--~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g-~~-~~rYfrs-~Ts~ 221 (303)
T cd08987 148 FFSD-DNG--KLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIG-SD-GGRYFRS-WTAT 221 (303)
T ss_pred EEec-CCC--eEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecC-CC-CCCeEEE-EEcC
Confidence 9732 333 899985 58865322223333 2389999999998 9999998862 21 1233445 9999
Q ss_pred CCCCCCeeC---CCCCeeeC
Q 045656 325 SPFGPWKPH---KKNPIYNG 341 (802)
Q Consensus 325 SplGPW~~h---p~NPI~~~ 341 (802)
||.|||+++ ..||+...
T Consensus 222 Sl~GpWt~~a~~e~nPfag~ 241 (303)
T cd08987 222 SLDGPWTPLATTESNPFAGA 241 (303)
T ss_pred CCCCCceecccccCCCcccc
Confidence 999999999 78998775
|
The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr |
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-07 Score=97.19 Aligned_cols=192 Identities=18% Similarity=0.119 Sum_probs=130.4
Q ss_pred eCeeeEEECCEEEEEEEeeecc-CCCceEEEEEEeCCCCCceEeeeeecCCC---------ceeeeEEEEe--CCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSI-TMQGDIGVAKSVDKGATWQQLGIALDEDW---------HLSFPYVFDY--HGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va~S~D~g~tw~~~gvvLde~~---------HLSyP~VF~~--dG~iYMi 256 (802)
.||-+++.++++|+|.|.+... .....|.+.+|.| +.+|+..+.||+... .++.|.|+.+ +|++||+
T Consensus 4 h~~~i~~~~~~yY~ygs~~~~~~~~~~gi~~~sS~D-LvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m~ 82 (265)
T cd08985 4 HGGGILKVGGTYYWYGENKGGGDTAFGGVSCYSSTD-LVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVMW 82 (265)
T ss_pred ccCceEEECCEEEEEEEecCCCCcccccEEEEECCC-CccceECceeccccccccccccCcEEECCeEEEeCCCCEEEEE
Confidence 5788899999999999997532 1346789999887 899999999996542 3899999775 5899998
Q ss_pred e--CCCCCCeeEEEEec-cCCc-Cceeeeecc--CCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 257 P--ESRAKGEVRLYRAV-NFPL-EWKLEKIIM--KKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 257 P--Ess~sg~l~LYra~-~FP~-~We~~~~Ll--~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
- +....+.-.+..|+ +-|. .|+...... ....+|+++|.. ||++||+++.. .+..+.|.. +..+
T Consensus 83 ~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~------~~~~i~i~~---L~~d 153 (265)
T cd08985 83 MHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDR------DNSDLYIYR---LTDD 153 (265)
T ss_pred EEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecC------CCCceEEEE---eCCC
Confidence 3 32223334455554 2344 477543322 345899999999 78999999753 133555544 2234
Q ss_pred CeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEec
Q 045656 330 WKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKELE 392 (802)
Q Consensus 330 W~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~~ 392 (802)
++.....+..... ...++|..+|+.+|++|++.=.|+.-.+..+...+.+.+. |++.....
T Consensus 154 ~~~~~~~~~~~~~--~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~ 215 (265)
T cd08985 154 YLSVTGEVTTVFV--GAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNP 215 (265)
T ss_pred cccccceEEEccC--CCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcC
Confidence 5444444432221 2478999999999999999877754455677888877764 66655543
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=98.92 Aligned_cols=171 Identities=19% Similarity=0.260 Sum_probs=115.0
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccCC---CceEEEEEEeCCCCCceEeeeee--c-----CCCceeeeEEEEeC-CEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSITM---QGDIGVAKSVDKGATWQQLGIAL--D-----EDWHLSFPYVFDYH-GQIYM 255 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~~---~G~I~va~S~D~g~tw~~~gvvL--d-----e~~HLSyP~VF~~d-G~iYM 255 (802)
.+.||=.++ |+++|||........ .-.|++++|.| +.+|+..+.+| . +...++.|.|+..+ |++||
T Consensus 5 ~~~~~~~~~--g~yhlfy~~~~~~~~~~~~~~~~~a~S~D-~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~ 81 (276)
T cd08979 5 IVFNPAVVV--GKYHLFYLAAPRGGGDGNTSRIGAASSDD-GTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRM 81 (276)
T ss_pred cccCCceEe--eeEEEEEEccCcCcCCCCcceeEEEEcCC-CCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEE
Confidence 345666666 899999998765431 34688999877 99999998777 1 12458999999998 99999
Q ss_pred EeCC-----CCCCeeEEEEeccCCcCceeeeecc-------------C-CCccCCEEEEEC--CEEEEEEeCCCCCCCCC
Q 045656 256 MPES-----RAKGEVRLYRAVNFPLEWKLEKIIM-------------K-KPLVDPFMINHD--GQYWLFGSDHSGFGTTQ 314 (802)
Q Consensus 256 iPEs-----s~sg~l~LYra~~FP~~We~~~~Ll-------------~-~~~vDatI~~~d--G~wwLF~S~~~~~g~~~ 314 (802)
+-.. .....+.+..+.+. ..|+.....+ + ....||.|++.+ |+|||+++.... ..
T Consensus 82 ~Yt~~~~~~~~~~~i~~A~S~D~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~---~~ 157 (276)
T cd08979 82 FYTGYDRPKGAVQRIGLATSKDL-IHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDA---DE 157 (276)
T ss_pred EEecccCCCCCcceEEEEECCCC-CceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEcc---CC
Confidence 9543 22355666666554 6788754321 1 248999999998 999999986321 12
Q ss_pred CCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcc
Q 045656 315 NGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQ 365 (802)
Q Consensus 315 n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Q 365 (802)
...+.+++|+++ -.|+.++..+..........-.+..+|..+|+.|++.-
T Consensus 158 ~~~i~~a~S~D~-~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~ 207 (276)
T cd08979 158 RGAIGLATSPDL-IHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYS 207 (276)
T ss_pred CcEEEEEECCCC-CcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEE
Confidence 346677776654 46988775531111111122356778888999988764
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=100.94 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=114.8
Q ss_pred eeeCeeeE-EECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCC
Q 045656 187 FVADPFFY-LQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKG 263 (802)
Q Consensus 187 F~ADPFll-~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg 263 (802)
|+.||-.+ ..+|+|||||....... +.-.+++++|.| +.+|++++++|..+
T Consensus 2 w~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~D-lv~W~~~~~al~p~------------------------- 55 (298)
T cd08996 2 WMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKD-LVHWEHLPVALAPD------------------------- 55 (298)
T ss_pred CcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecC-ccceeECCcccCCC-------------------------
Confidence 78899965 78899999998543322 245789999988 99999988776410
Q ss_pred eeEEEEeccCCcCceeeeeccCCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeee--
Q 045656 264 EVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYN-- 340 (802)
Q Consensus 264 ~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~-- 340 (802)
..+ -+..+...+++..+ |+++||||............+.+++|++....|++...+|++.
T Consensus 56 -----------~~~------d~~g~~sGsav~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~ 118 (298)
T cd08996 56 -----------DPY------DSGGCFSGSAVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPP 118 (298)
T ss_pred -----------Ccc------cCCeEEeCeEEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCC
Confidence 011 11235567777777 9999999974211111233677888887788999999999874
Q ss_pred CCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 341 GDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 341 ~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.......| -..+|..+|++|+..-.........+.+++.++|..|++....
T Consensus 119 ~~~~~~~R-DP~V~~~~g~~~m~~g~~~~~~~~~i~ly~S~Dl~~W~~~~~~ 169 (298)
T cd08996 119 DGYTTHFR-DPKVFWHDGKWYMVLGAGTEDGTGRILLYRSDDLKNWEYLGEL 169 (298)
T ss_pred CCCCCccc-CCeEEeECCEEEEEEEEEecCCCcEEEEEECCCCCCCEEccee
Confidence 21122345 5777888999999876655555678999999999999876543
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=94.38 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=123.7
Q ss_pred eEeeeeecCCCceeeeEEEEeCCEEEEEeCCC-CCCeeEEEEeccCCcCceeeeeccC---CCccCCEEEEECCEEEEEE
Q 045656 229 QQLGIALDEDWHLSFPYVFDYHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLEKIIMK---KPLVDPFMINHDGQYWLFG 304 (802)
Q Consensus 229 ~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~~~Ll~---~~~vDatI~~~dG~wwLF~ 304 (802)
++..+||...+ ..|.|++.++++||+-.+. ....+.+|++.++ ..|+.+...++ +.+..|.+++++|+|||++
T Consensus 5 ~~~nPv~~~~~--~DP~i~~~~~~yY~~~t~~~~~~gi~i~~S~DL-~~W~~~g~~~~~~~~~~WAP~i~~~~gkyy~yy 81 (280)
T cd09002 5 TYRNPILAGDY--PDPSILRDGEDYYMTHSSFKYTPGLVIWHSRDL-VNWTPVGPALPEYEGDVWAPDLCKYDGRYYIYF 81 (280)
T ss_pred cEeCCccCCCC--CCCEEEEECCEEEEEEcchhcCCCEEEEECCCc-CCceEccccccCCCCCEEcCeeEEECCEEEEEE
Confidence 34456776543 5999999999999986542 3468999999987 68998765443 3578999999999999999
Q ss_pred eCCCCCCCCCCCcEEEEEEcCCCCCCeeCC---CC----C-eeeCCC-C-------------------------------
Q 045656 305 SDHSGFGTTQNGQLEIWYSSSPFGPWKPHK---KN----P-IYNGDK-S------------------------------- 344 (802)
Q Consensus 305 S~~~~~g~~~n~~L~i~~AdSplGPW~~hp---~N----P-I~~~~~-~------------------------------- 344 (802)
|.... ..+....+++|++|.|||++.. .+ | |..+++ .
T Consensus 82 s~~~~---~~~~~~~va~ad~p~Gpw~~~~~~~~~~~IDp~vf~DddG~~Yl~~~~~~~~~l~~d~~~~~g~~~~~~~~~ 158 (280)
T cd09002 82 PAIPE---GGNWTNMVIWADSPEGPWSKPIDLKIGGCIDPGHVVDEDGNRYLFLSGGDRVRLTADGLSTDGKLEHVYDGW 158 (280)
T ss_pred EeecC---CCCceEEEEEECCCCCCCcCCEecCCCCccCCceEEcCCCCEEEEECCeeEEEECccccEecCcCEEEecCc
Confidence 97521 1244688999999999997632 01 1 111110 0
Q ss_pred ---------CCcccCCccEEECCeEEEEcc--cC-CCCCCceEEEEEeccC-CccceEEec---c--ccCCCCCCccccc
Q 045656 345 ---------LGARNGGRPFVYDGNLYRVGQ--DC-AESYGRRVRTFKVEIL-TKNEYKELE---G--RNAWNGARYHHLD 406 (802)
Q Consensus 345 ---------~~aR~GG~vF~~dGkLyRp~Q--dC-~~~YG~~L~l~~It~L-t~~~y~E~~---~--~~~w~~~~~Hhld 406 (802)
.....|..+++.+|++|++.= .| ...+++.+.+.+.+.+ .|+++++.. . ....+-.+..|-+
T Consensus 159 ~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~~~~g~GH~~ 238 (280)
T cd09002 159 RYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQEPWWSKGHAT 238 (280)
T ss_pred ccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCCCceeCCCCc
Confidence 002366777888999988663 33 2356778888887755 455544321 1 1111112455668
Q ss_pred cccCCCCCeEEEEeCc
Q 045656 407 AQQLSSGEWIAVMDGD 422 (802)
Q Consensus 407 ~~~l~~g~~i~vvDG~ 422 (802)
+-+-++|+|.+|.=+.
T Consensus 239 i~~~~~g~~~~vyH~~ 254 (280)
T cd09002 239 LVDGPDGQWWMVYHAY 254 (280)
T ss_pred EEECCCCCEEEEEEee
Confidence 7777788888887654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=96.82 Aligned_cols=125 Identities=21% Similarity=0.424 Sum_probs=93.1
Q ss_pred eeeeEEEEeCCEEEEEeCCCC----CCeeEEEEeccCCcCceeeeeccC--------CCccCCEEEEECCEEEEEEeCCC
Q 045656 241 LSFPYVFDYHGQIYMMPESRA----KGEVRLYRAVNFPLEWKLEKIIMK--------KPLVDPFMINHDGQYWLFGSDHS 308 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss~----sg~l~LYra~~FP~~We~~~~Ll~--------~~~vDatI~~~dG~wwLF~S~~~ 308 (802)
+..|.|++++|++||+..... ...+.+|+.+++ ..|+.+..++. ..+..|.+++++|+|||+||..
T Consensus 8 ~~DP~i~~~~g~yY~~~t~~~~~~~~~~~~~~~S~Dl-~~W~~~g~~l~~~~~~~~~~~~wAP~v~~~~g~yy~yys~~- 85 (275)
T cd09004 8 YADPEIRIFGGTYYIYPTSDGAGGEQTPFDVFSSKDL-VNWTKEGIILDMADVSWANRAAWAPSVIERNGKYYFYFSAN- 85 (275)
T ss_pred CCCCCeEEECCEEEEEEeccCCCCCeeEEEEEECCCC-CCceECcccccccCCcccCCCcCCCeEEEECCEEEEEEEcC-
Confidence 688999999999999975432 256889999887 78998765442 2488999999999999999873
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC-CCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEe
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK-SLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~-~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
..+.+++|++|.|||+....+|++.... ...++ -+.+|.+ ||+.|+....- ..+.+.++
T Consensus 86 -------~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~i-Dp~vf~d~dG~~yl~~~~~-----~~~~i~~l 146 (275)
T cd09004 86 -------GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPI-DPDVFIDDDGQAYLYWGGW-----GHCNVAKL 146 (275)
T ss_pred -------CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCcc-CCCeEECCCCCEEEEEcCc-----CCEEEEEE
Confidence 3688999999999999866678775421 11122 2567875 89999987541 34555555
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=98.20 Aligned_cols=236 Identities=19% Similarity=0.290 Sum_probs=150.3
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC--------C-
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE--------D- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde--------~- 238 (802)
++|||+. .|..||-+++.++.+||-.+.|+. ..| +.++.|.| +.+|+.....|+. .
T Consensus 21 i~NPvl~-----------gf~PDpSi~rvg~dyYia~stF~~--fpG-l~i~hS~D-L~nW~~v~tpl~~~~~ld~kgn~ 85 (549)
T COG3507 21 ILNPVLA-----------GFNPDPSIVRVGDDYYIATSTFEW--FPG-LAIHHSRD-LVNWTLVSTPLIRTSQLDLKGNF 85 (549)
T ss_pred ccCcccc-----------ccCCCCceEecCCceEEEcceEEE--cCc-eeeecccc-ccCcEEecccccCcchhhhhccc
Confidence 6899998 477999999999999998887765 345 88899988 9999998874433 2
Q ss_pred ---CceeeeEEEEeCCEEEEEeC----CC---CCCeeEEEEeccCCcCceeeeeccCC-CccCCEEEEE-CCEEEEEEeC
Q 045656 239 ---WHLSFPYVFDYHGQIYMMPE----SR---AKGEVRLYRAVNFPLEWKLEKIIMKK-PLVDPFMINH-DGQYWLFGSD 306 (802)
Q Consensus 239 ---~HLSyP~VF~~dG~iYMiPE----ss---~sg~l~LYra~~FP~~We~~~~Ll~~-~~vDatI~~~-dG~wwLF~S~ 306 (802)
--+|+|.|-.+||++||+-- .. ++....|+.|..---.|.. ++.+.. ..+||++|.. ||+-||++..
T Consensus 86 ~~S~giWAPdl~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsD-pi~l~~~~~iDPslf~D~dGr~wlv~~~ 164 (549)
T COG3507 86 PYSGGIWAPDLSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSD-PIKLNGSNAIDPSLFFDKDGRKWLVNGS 164 (549)
T ss_pred CCCCceeccceecCCCcEEEEEecccccCCcccccccEEEEecCCCCCccc-ceecCCcCccCCceeecCCCCEEEEecc
Confidence 34899999999999999952 22 3344666665443345753 333344 4999999998 9999999965
Q ss_pred CCCCCCCCC--CcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC-CCCCceEEEEEeccC
Q 045656 307 HSGFGTTQN--GQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA-ESYGRRVRTFKVEIL 383 (802)
Q Consensus 307 ~~~~g~~~n--~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~-~~YG~~L~l~~It~L 383 (802)
.+. +.... +.+-+=.-+....+-... .-+++-+-.....-.|..+++.+|-+|+.+-.|. ..||+.+.+.|...+
T Consensus 165 w~~-~~~~~~~~~i~l~~~~~~~~~l~g~-~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~gG~t~~gh~~~vaRSKsi 242 (549)
T COG3507 165 WDG-GIFMHSFAGIILQEYDKTTQKLVGQ-GYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSKSI 242 (549)
T ss_pred cCC-CcccccccceeeeeccccccccCCc-cceeEeccCCCccccCceeeccCCEEEEEEEcCCCCccceeEEEEeccCC
Confidence 321 11111 111111101111111100 0122222111234566777888999999999998 999999999999998
Q ss_pred CccceEEec----------cccCCCCCCccccccccCCCCCeEEEEe-Cccc
Q 045656 384 TKNEYKELE----------GRNAWNGARYHHLDAQQLSSGEWIAVMD-GDRA 424 (802)
Q Consensus 384 t~~~y~E~~----------~~~~w~~~~~Hhld~~~l~~g~~i~vvD-G~r~ 424 (802)
+-- |+-.+ ++..|.+++ |-++-.=+.|+|....- |.+.
T Consensus 243 dGP-Ye~~~~~pllt~~~~p~~~~q~~g--h~~~v~t~~g~w~~~~~~grp~ 291 (549)
T COG3507 243 DGP-YEDHPGNPLLTSRDNPENPLQKAG--HGTLVVTPTGEWYFAYLLGRPG 291 (549)
T ss_pred CCC-cccCCCCeeeeecCCCCChhhhcC--CcceEECCCCcEeeeeeccccC
Confidence 732 44443 233333222 22333344578888877 4443
|
|
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-07 Score=101.59 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=110.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||-.+ ..+|+|||||.-...... .-.+++++|.| +.+|+.+++||..
T Consensus 5 ~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~D-lv~W~~~~~aL~P----------------------- 60 (437)
T smart00640 5 PKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKD-LVHWTHLPVALAP----------------------- 60 (437)
T ss_pred CcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCC-cceeeecCcccCC-----------------------
Confidence 45699999954 788999999985433222 33689999987 9999998877641
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCC-CCCC--CCCCcEEEEEEcCCCCCCeeCCCCC
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHS-GFGT--TQNGQLEIWYSSSPFGPWKPHKKNP 337 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~-~~g~--~~n~~L~i~~AdSplGPW~~hp~NP 337 (802)
..+. -+..+.+.+++..+|+++||||... .... ....+..++.+++.+..|++++.||
T Consensus 61 --------------~~~~-----d~~g~~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~P 121 (437)
T smart00640 61 --------------DEWY-----DSNGVFSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNP 121 (437)
T ss_pred --------------CCcC-----CCCcEEEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCc
Confidence 1110 0123677888889999999999752 1110 1112334666677788999999999
Q ss_pred eeeCCCC---CCcccCCccEEEC-CeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 338 IYNGDKS---LGARNGGRPFVYD-GNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 338 I~~~~~~---~~aR~GG~vF~~d-GkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
|+...+. ...| -..+|..+ |++|+..-.....=+..+.+++.++|..|+|....
T Consensus 122 vi~~~p~~~~~~fR-DP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~S~Dl~~W~~~~~~ 179 (437)
T smart00640 122 VLVPPPGIGTEHFR-DPKVFWYDGDKWYMVIGASDEDKTGIALLYRSTDLKNWTLLGEL 179 (437)
T ss_pred EEeCCCCCCCCCcC-CCCccEECCCEEEEEEEEEecCCCeEEEEEECCCcccCeECCcc
Confidence 9975321 1122 25667766 48888653222111455999999999999987654
|
|
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-05 Score=85.19 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=91.8
Q ss_pred eeeCeeeEEEC-CEEEEEEEeeecc--CCCceEEEEEEeCCCCCceEee--eeec----CCCceeeeEEEEeCCEEEEEe
Q 045656 187 FVADPFFYLQG-NDLYLFYETKNSI--TMQGDIGVAKSVDKGATWQQLG--IALD----EDWHLSFPYVFDYHGQIYMMP 257 (802)
Q Consensus 187 F~ADPFll~~~-g~~ylF~E~~~~~--~~~G~I~va~S~D~g~tw~~~g--vvLd----e~~HLSyP~VF~~dG~iYMiP 257 (802)
.++ |-++..+ ++++|||+..... ..+..|++|.|.|++.+|+..+ +++. +..|.-.|+||.++|++||+-
T Consensus 63 ~~s-Gsav~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~g~~~m~~ 141 (298)
T cd08996 63 CFS-GSAVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHDGKWYMVL 141 (298)
T ss_pred EEe-CeEEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeECCEEEEEE
Confidence 344 7777777 9999999986531 3467889999987799998865 2331 235788999999999999995
Q ss_pred CCC---CCCeeEEEEeccCCcCceeeeecc-C-----CCccCCEEEEEC--CEEEEEEeCC
Q 045656 258 ESR---AKGEVRLYRAVNFPLEWKLEKIIM-K-----KPLVDPFMINHD--GQYWLFGSDH 307 (802)
Q Consensus 258 Ess---~sg~l~LYra~~FP~~We~~~~Ll-~-----~~~vDatI~~~d--G~wwLF~S~~ 307 (802)
-+. ..+.+.+|++.+. ..|+....+. . ...+=|-+|+.+ |+|+|++|..
T Consensus 142 g~~~~~~~~~i~ly~S~Dl-~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~ 201 (298)
T cd08996 142 GAGTEDGTGRILLYRSDDL-KNWEYLGELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQ 201 (298)
T ss_pred EEEecCCCcEEEEEECCCC-CCCEEcceecccCCCccceEeCCcEEEECCCCeEEEEECCC
Confidence 443 4589999998876 6798876542 1 247899999999 9999999875
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd08982 GH43_3 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=92.29 Aligned_cols=158 Identities=17% Similarity=0.320 Sum_probs=102.9
Q ss_pred eeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeee-ccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEE
Q 045656 241 LSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI-IMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLE 319 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~-Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~ 319 (802)
+..|.|++++|++||+..+.. .+|+++++ .+|+.+.. +....+.+|.|++++|++|++++.. +..
T Consensus 3 ~~DP~i~~~~g~YY~~~T~~~----~i~~S~DL-~~W~~~g~~~~~~~~WAP~i~~~~g~~Y~~~~~~---------~~~ 68 (295)
T cd08982 3 AADPVVILFKGEYYLFASMSG----GYWHSSDL-IDWDFIPTNSLPDEGYAPAVFVYDGTLYYTASTY---------NSR 68 (295)
T ss_pred CCCCeEEEECCEEEEEEeCCC----CeEECCCc-CCceECCcccCCCCcCcCEEEEECCEEEEEEeCC---------Cce
Confidence 467999999999999998843 27999886 78998765 4456799999999999999988752 356
Q ss_pred EEEEcCCCCC-CeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEEe------
Q 045656 320 IWYSSSPFGP-WKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKEL------ 391 (802)
Q Consensus 320 i~~AdSplGP-W~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~------ 391 (802)
+++|++|+|| |+.+.. + .. ..---+.+|++ ||+.|+..-. ....+|.+.|++.-+.....|.
T Consensus 69 v~~s~~p~gp~w~~~~~-~---~~---~~~IDp~vf~DdDGk~Yl~~g~---~~~~~i~~~eL~~d~~~~~g~~~~l~~~ 138 (295)
T cd08982 69 IYKTADPLSGPWEEVDK-S---FP---PGLADPALFIDDDGRLYLYYGC---SNNYPLRGVEVDPDTFRPIGEPVELIPG 138 (295)
T ss_pred EEEeCCCCCCCcccccc-c---cC---CCccCCceEECCCCCEEEEEec---CCCCCeEEEEECcccCCccCcceEEEeC
Confidence 8899999975 876521 1 10 01112577887 5999998632 1234577777642111111111
Q ss_pred -ccccCCCCCCcccccccc--CCCCCeEEEEeCc
Q 045656 392 -EGRNAWNGARYHHLDAQQ--LSSGEWIAVMDGD 422 (802)
Q Consensus 392 -~~~~~w~~~~~Hhld~~~--l~~g~~i~vvDG~ 422 (802)
.....|...+.|+.+... ..+|-++.-.+|.
T Consensus 139 ~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~G~ 172 (295)
T cd08982 139 NPDKHGWERFGENNDNPDKTPWMEGAWMTKHNGK 172 (295)
T ss_pred CCCCcCeEecCcccccccCCccccccEEEEECCE
Confidence 134568887877755422 3344455555554
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=91.58 Aligned_cols=124 Identities=17% Similarity=0.281 Sum_probs=90.1
Q ss_pred eeeeEEEEeCCEEEEEeCCC-CCCeeEEEEeccCCcCceeeeeccC-------------CCccCCEEEEECCEEEEEEeC
Q 045656 241 LSFPYVFDYHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLEKIIMK-------------KPLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~~~Ll~-------------~~~vDatI~~~dG~wwLF~S~ 306 (802)
...|.|+++++.+||+-.+. ....+.+|+++++ ..|+.+...++ ..+..|.|++++|+|||+++.
T Consensus 8 ~~DP~ii~~~~~yY~~~t~~~~~~g~~~~~S~DL-~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yy~yy~~ 86 (269)
T cd08989 8 NPDPSIIRAGDDYYMASSTFEWFPGVQIHHSTDL-VNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSYYDGKFWLIYTA 86 (269)
T ss_pred CCCCcEEEECCeEEEEECccccCCCcEEEECCcc-CCCEEccccccCccccccccCCCCCcEEcceEEEECCEEEEEEec
Confidence 35899999999999997553 2356999999987 78998643221 147899999999999999987
Q ss_pred CCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 307 HSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 307 ~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
... .....+++++|++|.|||+. |+.... .---+.+|.+ ||+.|+..-. ..+|.+.|++
T Consensus 87 ~~~---~~~~~i~va~sd~~~Gpw~~----~~~~~~----~~IDp~~f~D~dG~~Yl~~~~-----~~~i~l~~l~ 146 (269)
T cd08989 87 VKV---WKDCHNYLFTAEDITGPWSR----PIFLNY----GGFDPSLFHDDDGKKYLINMG-----WSGIRLQEYS 146 (269)
T ss_pred ccc---CCCceEEEEEECCCCCCCcC----CEECCC----CcccCceEEcCCCCEEEEecC-----CCcEEEEEEC
Confidence 522 22346889999999999984 554321 1112567875 8999998632 2567777764
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-06 Score=94.64 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=109.0
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||-.+ ..+|+|||||.-...... .-..++++|.| +.+|+++++||... .
T Consensus 22 ~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~D-lv~W~~~~~al~P~--------------------~- 79 (445)
T TIGR01322 22 QTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKD-LVHWEDEGVALAPD--------------------D- 79 (445)
T ss_pred CcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCC-ccccEECCccCcCC--------------------C-
Confidence 45799999987 669999999975433222 23578999987 99999998877411 0
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCC-CCcEEEEEEcCCCCCCeeCCCCCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQ-NGQLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~-n~~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
.|+ +..+...+++..+|+++||||......... .....+++|++ .+.|++.+. ||+
T Consensus 80 ---------------~~d------~~G~~sGsav~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~-pvi 136 (445)
T TIGR01322 80 ---------------PYD------SHGCYSGSAVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGI-VVI 136 (445)
T ss_pred ---------------ccc------CCceEECeEEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCC-ceE
Confidence 111 123557777889999999999742111111 11234777776 679999864 998
Q ss_pred eCCCCC---CcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKSL---GARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~~---~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
...+.. ..| -..+|..+|++|+..--....-+..+.+++.++|..|+|....
T Consensus 137 ~~~~~~~~~~fR-DP~V~~~~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W~~~g~~ 191 (445)
T TIGR01322 137 ELPPAGYTAHFR-DPKVWKHNGHWYMVIGAQTETEKGSILLYRSKDLKNWTFVGEI 191 (445)
T ss_pred eCCCCCCcCcCC-CCcEEeECCEEEEEEEEecCCCceEEEEEECCCcccCeEeccc
Confidence 753211 112 3567778999998764333333456899999999999887654
|
|
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=84.05 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=100.1
Q ss_pred ceeeCeeeEEE--CCEEEEEEEeeecc----CCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCC
Q 045656 186 NFVADPFFYLQ--GNDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 186 ~F~ADPFll~~--~g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEs 259 (802)
..+| |.++.. +++|+||+...... ...-.|.++.+.| ..+|+..++.++.......+.||+++|++||+-.+
T Consensus 77 ~~WA-Pev~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~D-f~tft~p~~~~~~~~~~ID~~v~~~~g~~Yl~~k~ 154 (276)
T cd08983 77 NTWA-PEAFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSD-FVTFTEPKVWIDLGANVIDTTVVKVGGTYYRFYKN 154 (276)
T ss_pred cEeC-ccceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCc-ccccCCCeEeecCCCCeEeeEEEEeCCEEEEEEec
Confidence 4566 999966 79999999986542 1223454444334 77899888888888889999999999999999655
Q ss_pred CCCCeeEEEEeccCCcCceeeee--ccC-CCccCCEEEEECC--EEEEEEeCCCCCCCCCCCcEEEEEEcCCC-CCCee
Q 045656 260 RAKGEVRLYRAVNFPLEWKLEKI--IMK-KPLVDPFMINHDG--QYWLFGSDHSGFGTTQNGQLEIWYSSSPF-GPWKP 332 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~~~--Ll~-~~~vDatI~~~dG--~wwLF~S~~~~~g~~~n~~L~i~~AdSpl-GPW~~ 332 (802)
...+.|.+.++.+.-..|+.... ... ...+.|++++.++ +||||+... + ......+.++++. +.|++
T Consensus 155 ~~~~~i~~~~s~~l~g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y---~---~~~Y~~~~t~d~~~~~~~~ 227 (276)
T cd08983 155 EGSKDIELARSKSLTGPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNY---S---GGGYYPFDTSDLASTSWTK 227 (276)
T ss_pred CCCCcEEEEEeCCCCCCceEecccccCCCCceeCCeEEEECCCCEEEEEEEEC---C---CCCeEEEEecCcCCCceec
Confidence 44577888888776556765432 122 3589999999987 999999763 2 3456677777774 45653
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=83.54 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=97.4
Q ss_pred CCeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCc
Q 045656 135 GSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQG 214 (802)
Q Consensus 135 ~~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G 214 (802)
+.=.||++...|-.+.+- ..+|++...+ +.......+.||.++..++++||+|+..+....+.
T Consensus 23 ~~~~ig~A~S~Dg~~~~~---------------~~~~~i~p~~--~~~~~~~gv~dP~v~~~~g~y~m~Yta~~~~~~~~ 85 (268)
T cd08993 23 GVIRLGLARSRDGLHFEI---------------DPDPPVWPPP--EDGFEEGGVEDPRIVKIDDTYYITYAARPNAPNGT 85 (268)
T ss_pred CceEEEEEEECCCceEEE---------------CCcceEcCCC--CCcccccCccCcEEEEECCEEEEEEEccCCCCCCc
Confidence 455788888877433211 1344443211 11112346779999999999999999976433567
Q ss_pred eEEEEEEeCCCCCceEeeeeecCCCceeeeEEE--EeCCEEEEE--eCC---CCCCeeEEEEeccCCcCceeeeeccCC-
Q 045656 215 DIGVAKSVDKGATWQQLGIALDEDWHLSFPYVF--DYHGQIYMM--PES---RAKGEVRLYRAVNFPLEWKLEKIIMKK- 286 (802)
Q Consensus 215 ~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF--~~dG~iYMi--PEs---s~sg~l~LYra~~FP~~We~~~~Ll~~- 286 (802)
.|++|+|.| +.+|+..+.+++... -.+.+| +.+|++||+ |.. .....|-|.+..+. ..|+.+..++..
T Consensus 86 ~i~lA~S~D-~~~W~~~~~~~~~~~--~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~Dl-~~W~~~~~~~~~~ 161 (268)
T cd08993 86 RIGLATTKD-FITFERLGTSLVPNN--RDGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPDL-VHWGNHRFVLSPR 161 (268)
T ss_pred EEEEEEeCC-cceEEEecccCCCCC--CCEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCCc-CccCCCeEEecCC
Confidence 899999977 899999886554322 245666 368999999 332 23566666666554 689876654421
Q ss_pred --------CccCCEEEEECCEEEEEEeC
Q 045656 287 --------PLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 287 --------~~vDatI~~~dG~wwLF~S~ 306 (802)
-...|..++.+..|+|+|..
T Consensus 162 ~~~wd~~~ig~g~~pi~~~~g~l~~yhg 189 (268)
T cd08993 162 PNHWEQLKIGAGTPPIKTEEGWLVLYHG 189 (268)
T ss_pred CCceeeceecCCCCCcCcCCCEEEEEec
Confidence 12346677666558999954
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=89.79 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=124.4
Q ss_pred CCceeeCeeeEEECCEEEEEEEeeeccC----CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEE-EeCCEEEEEeC
Q 045656 184 PSNFVADPFFYLQGNDLYLFYETKNSIT----MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVF-DYHGQIYMMPE 258 (802)
Q Consensus 184 ~~~F~ADPFll~~~g~~ylF~E~~~~~~----~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF-~~dG~iYMiPE 258 (802)
...-|| |-+..++|++||+|+...... ..+.+-+-.. +-...|.+... |... --..|.+| +.||+.||+=-
T Consensus 88 S~giWA-Pdl~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~-s~~G~WsDpi~-l~~~-~~iDPslf~D~dGr~wlv~~ 163 (549)
T COG3507 88 SGGIWA-PDLSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAE-SIDGPWSDPIK-LNGS-NAIDPSLFFDKDGRKWLVNG 163 (549)
T ss_pred CCceec-cceecCCCcEEEEEecccccCCcccccccEEEEec-CCCCCccccee-cCCc-CccCCceeecCCCCEEEEec
Confidence 345688 999999999999997654432 1133422221 22357877543 3322 13578884 66899999944
Q ss_pred CCCCC------eeEEEEecc---CCcCceeeeeccCC----CccCCEEEEECCEEEEEEeCCCCCC-CCCCCcEEEEEEc
Q 045656 259 SRAKG------EVRLYRAVN---FPLEWKLEKIIMKK----PLVDPFMINHDGQYWLFGSDHSGFG-TTQNGQLEIWYSS 324 (802)
Q Consensus 259 ss~sg------~l~LYra~~---FP~~We~~~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g-~~~n~~L~i~~Ad 324 (802)
+...+ ...++.+.+ ++..=+..++++++ -.+.|.+.+++|.|||+.+.. | +.-.....+++|.
T Consensus 164 ~w~~~~~~~~~~~i~l~~~~~~~~~l~g~~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~g---G~t~~gh~~~vaRSK 240 (549)
T COG3507 164 SWDGGIFMHSFAGIILQEYDKTTQKLVGQGYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEG---GLTTYGHAIRVARSK 240 (549)
T ss_pred ccCCCcccccccceeeeeccccccccCCccceeEeccCCCccccCceeeccCCEEEEEEEcC---CCCccceeEEEEecc
Confidence 33333 223333322 11111112333432 378999999999999999863 3 3334467799999
Q ss_pred CCCCCCeeCCCCCeeeCCC----CCCcccCCccEEE-CCeEEEEcccCCCCCC-ceEEEEEeccCCccceEEeccccCCC
Q 045656 325 SPFGPWKPHKKNPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQDCAESYG-RRVRTFKVEILTKNEYKELEGRNAWN 398 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG-~~L~l~~It~Lt~~~y~E~~~~~~w~ 398 (802)
++.|||+.||.||++.... ....+.+|..++. +|+.|...-...+.+| ....+-|.+.+-+=++.+ .||
T Consensus 241 sidGPYe~~~~~pllt~~~~p~~~~q~~gh~~~v~t~~g~w~~~~~~grp~~~~~~~~lGret~~~~v~w~~-----gwp 315 (549)
T COG3507 241 SIDGPYEDHPGNPLLTSRDNPENPLQKAGHGTLVVTPTGEWYFAYLLGRPGTGYGYCALGRETGLQPLTWHD-----GWP 315 (549)
T ss_pred CCCCCcccCCCCeeeeecCCCCChhhhcCCcceEECCCCcEeeeeeccccCCCCCceeccceeeeeEEEeec-----CCC
Confidence 9999999999999996421 1112234554444 7777775543334444 333444443333323333 577
Q ss_pred CCC-cccccccc
Q 045656 399 GAR-YHHLDAQQ 409 (802)
Q Consensus 399 ~~~-~Hhld~~~ 409 (802)
..+ .|..-+|+
T Consensus 316 ~i~~~~~~~~~~ 327 (549)
T COG3507 316 RIGEGHEIRVHQ 327 (549)
T ss_pred cccCCCccccee
Confidence 633 66655554
|
|
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=89.46 Aligned_cols=131 Identities=18% Similarity=0.380 Sum_probs=85.0
Q ss_pred ecCCCceeeeE-EEEeCCEEEEEe------CC-----CCC------CeeEEEEeccC-CcCceeeeeccC---------C
Q 045656 235 LDEDWHLSFPY-VFDYHGQIYMMP------ES-----RAK------GEVRLYRAVNF-PLEWKLEKIIMK---------K 286 (802)
Q Consensus 235 Lde~~HLSyP~-VF~~dG~iYMiP------Es-----s~s------g~l~LYra~~F-P~~We~~~~Ll~---------~ 286 (802)
.+++.+.++|. |+..+|++||.- |. ... ..-+|+.|+.- ...|+.+...+. .
T Consensus 31 ~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~~g~Wd~~ 110 (349)
T cd08992 31 YEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGEKGAYDDR 110 (349)
T ss_pred cccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCCCCCcccc
Confidence 45677888996 999999999962 11 000 12334444322 347987765332 1
Q ss_pred CccCCEEEEECCEEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC----------CCcc-------
Q 045656 287 PLVDPFMINHDGQYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS----------LGAR------- 348 (802)
Q Consensus 287 ~~vDatI~~~dG~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~----------~~aR------- 348 (802)
.+..|.|++++|+|||||+.... ........+.+++|+++.|||+++ .+||+..... ...+
T Consensus 111 ~vwaP~Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~-d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~ 189 (349)
T cd08992 111 SVFTPEVLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKS-DEPILSPSNDGIWKGDEDNRFLVKKKGSFDS 189 (349)
T ss_pred ceECcEEEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccC-CCcEecCCcCCceeeccCceeEeccCCCccc
Confidence 37889999999999999985321 111123478999999999999986 5788753210 0011
Q ss_pred ---cCCccEEECCeEEEEccc
Q 045656 349 ---NGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 349 ---~GG~vF~~dGkLyRp~Qd 366 (802)
.+..++..+|++|+...-
T Consensus 190 ~~v~~P~v~~~~g~yyL~Y~G 210 (349)
T cd08992 190 HKVHDPCLFPFNGKFYLYYKG 210 (349)
T ss_pred CceECCEEEEECCEEEEEEEc
Confidence 223578889999998744
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=79.56 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||-.+ ..+|+|+|||--...... .-.-++++|.| +.+|+++++||...
T Consensus 5 ~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~---------------------- 61 (308)
T PF00251_consen 5 PKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-LVHWEHLPVALPPD---------------------- 61 (308)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESS-SSSEEEEEEEE-SS----------------------
T ss_pred CCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCC-CCCceeCCceEccc----------------------
Confidence 45699999754 799999999976554433 33567899887 89999999887521
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCC-CCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKK-NPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~-NPI~ 339 (802)
++. -+..+.--+++.++++++||||.... .......+++|.+....|++++. |||+
T Consensus 62 ---------------~~~-----d~~g~~SGs~~~~~~~~~~~YTg~~~---~~~~~q~~A~s~d~~~~w~k~~~~~pvi 118 (308)
T PF00251_consen 62 ---------------EEY-----DADGCFSGSAVVDDDNLVLFYTGNNR---DGKQVQCLAYSTDDGITWTKYPQGNPVI 118 (308)
T ss_dssp ---------------SGG-----GTTEEEEEEEEEETTCEEEEEEEEET---TTEEEEEEEEESSTTSSEEE-TTTCESB
T ss_pred ---------------ccC-----CcCccCcceEEEECCEEEEEEeccCC---CCCeEEEEEEECCCCCceEEcCCCCcEE
Confidence 110 01123445577777789999997522 11224568888777789999994 9999
Q ss_pred eCCCCCCcccC---Ccc-EEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKSLGARNG---GRP-FVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~~~aR~G---G~v-F~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
...+.. ...+ ..+ +..+|++|++.-.... -+..+.+++.++|..|+|....
T Consensus 119 ~~~p~~-~~~~~RDP~v~~~~~~~~~m~~g~~~~-~~g~i~~y~S~Dl~~W~~~~~l 173 (308)
T PF00251_consen 119 PEPPPG-DTTDFRDPKVFWREDGRWYMLLGAGRD-GRGCILLYTSDDLIHWEYLGPL 173 (308)
T ss_dssp ESSSTT-SCTSEEEEEEEEECTTEEEEEEEEEET-TEEEEEEEEESSSSSEEEEEEE
T ss_pred EecccC-CCCccccCeEEEecCCEEEEEEecccc-CcceEEEEEcCCcccCceeCcc
Confidence 863211 1111 234 3337888887654433 5567999999999999998776
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-05 Score=86.79 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=86.2
Q ss_pred CeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEee-eeecCC-----CceeeeEEEEeCCEEEEEeC--
Q 045656 190 DPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLG-IALDED-----WHLSFPYVFDYHGQIYMMPE-- 258 (802)
Q Consensus 190 DPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~g-vvLde~-----~HLSyP~VF~~dG~iYMiPE-- 258 (802)
.|-++..++++++||+...... ..-...+|.|.| +.+|+..+ +||+.+ .|.-.|+||+++|++||+=-
T Consensus 88 sGsav~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~~g~~~M~~g~~ 166 (445)
T TIGR01322 88 SGSAVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGIVVIELPPAGYTAHFRDPKVWKHNGHWYMVIGAQ 166 (445)
T ss_pred ECeEEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCCceEeCCCCCCcCcCCCCcEEeECCEEEEEEEEe
Confidence 5788889999999999853211 112245677777 77998876 577542 47789999999999999832
Q ss_pred -CCCCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCC
Q 045656 259 -SRAKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~ 307 (802)
....+.+.||++.++ ..|+.+..+... ..+=|-+|+.+|+|+|++|..
T Consensus 167 ~~~~~g~i~ly~S~Dl-~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~k~vL~~s~~ 225 (445)
T TIGR01322 167 TETEKGSILLYRSKDL-KNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDGQDVLLFSPQ 225 (445)
T ss_pred cCCCceEEEEEECCCc-ccCeEecccccccccccCCccceEECCeEEEECCcEEEEEecc
Confidence 134578999998775 789987764321 256788999999999999864
|
|
| >PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=80.67 Aligned_cols=175 Identities=20% Similarity=0.345 Sum_probs=102.5
Q ss_pred CCCCCCCeeccccccCCCCCCceeeCeeeEEE-CCEEEEEEEeeecc---CCCceEE-----EEEEeCCC---CCceEee
Q 045656 165 AWPVANPIMTCASVSSAGFPSNFVADPFFYLQ-GNDLYLFYETKNSI---TMQGDIG-----VAKSVDKG---ATWQQLG 232 (802)
Q Consensus 165 ~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~-~g~~ylF~E~~~~~---~~~G~I~-----va~S~D~g---~tw~~~g 232 (802)
.|-.+-||+....- +. ...+=|+=--++.. ++++.|||+..... ..+-.|. .+...+++ ..|+.+.
T Consensus 112 ~W~~~G~vf~~g~~-~~-~~s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~ 189 (428)
T PF02435_consen 112 GWKNGGPVFPEGAS-FV-PGSREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHH 189 (428)
T ss_dssp G-EEEEESS-TTCC-CC-GCEEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEE
T ss_pred CceECcccCCCCCC-CC-ccCcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEcccccee
Confidence 57777777763222 00 00122232223434 79999999986541 1111322 22223323 2355556
Q ss_pred eeecCC------------CceeeeEEEEe--CCEEEEEeCC---------------------------C--------CCC
Q 045656 233 IALDED------------WHLSFPYVFDY--HGQIYMMPES---------------------------R--------AKG 263 (802)
Q Consensus 233 vvLde~------------~HLSyP~VF~~--dG~iYMiPEs---------------------------s--------~sg 263 (802)
.+++-+ +.+=.|++|++ +|+.||+-|. . +.+
T Consensus 190 ~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng 269 (428)
T PF02435_consen 190 ELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANG 269 (428)
T ss_dssp EEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EE
T ss_pred EeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecc
Confidence 667554 44778999999 9999999663 1 356
Q ss_pred eeEEEEeccCC-cCceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC---CCCCCCcEEEEEEcC-CCCCCeeC
Q 045656 264 EVRLYRAVNFP-LEWKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF---GTTQNGQLEIWYSSS-PFGPWKPH 333 (802)
Q Consensus 264 ~l~LYra~~FP-~~We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~---g~~~n~~L~i~~AdS-plGPW~~h 333 (802)
.|=|-++.+-. ..||.-+-|++ ++++=|-|++++|+||||++.+... +....+.+..+++++ +.|||+|-
T Consensus 270 ~iGi~~~~~~~~~~w~~~~PL~~a~~v~de~ERP~iv~~~gkyYLFt~s~~~~~a~g~~g~d~~yg~~~~~~L~g~y~PL 349 (428)
T PF02435_consen 270 AIGIAKLTNDDGTVWELLPPLLSANGVNDELERPHIVFMNGKYYLFTISHLSTFADGIVGPDGVYGFVVSDSLRGPYKPL 349 (428)
T ss_dssp EEEEEEESTTTTSEEEEEEEEEEETTTBS-EEEEEEEEETTEEEEEEEEEGGGBSTTHHTTSEEEEEEEESSTTS--EEG
T ss_pred eeeeEEecCCCCCccEEeCcceecccccccccCCcEEEECCEEEEEEEeccccccCCccCCCeEEEEEECccccCCceec
Confidence 67777776543 56998666554 4689999999999999999653221 222244688888877 99999987
Q ss_pred CCCCeeeC
Q 045656 334 KKNPIYNG 341 (802)
Q Consensus 334 p~NPI~~~ 341 (802)
-.+=++-.
T Consensus 350 NgsGlVl~ 357 (428)
T PF02435_consen 350 NGSGLVLG 357 (428)
T ss_dssp CCTSEEEE
T ss_pred CCCceEec
Confidence 76665554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A .... |
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00054 Score=74.57 Aligned_cols=139 Identities=20% Similarity=0.297 Sum_probs=98.3
Q ss_pred eeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe---eeeecC-----CCceeeeEE-EEeCCEEEEEe--CC
Q 045656 191 PFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL---GIALDE-----DWHLSFPYV-FDYHGQIYMMP--ES 259 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~---gvvLde-----~~HLSyP~V-F~~dG~iYMiP--Es 259 (802)
.-++..++++++||+...... .-.+.+|.|.|++.+|+.. .+||+. ..|+-.|+| +..++++||+= ..
T Consensus 72 Gs~~~~~~~~~~~YTg~~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~ 150 (308)
T PF00251_consen 72 GSAVVDDDNLVLFYTGNNRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGR 150 (308)
T ss_dssp EEEEEETTCEEEEEEEEETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEE
T ss_pred ceEEEECCEEEEEEeccCCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccc
Confidence 556678889999999987643 5677788887889999983 577764 468999999 77789999993 22
Q ss_pred CCCCeeEEEEeccCCcCceeeeeccCC------CccCCEEEEECCE--------EEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 260 RAKGEVRLYRAVNFPLEWKLEKIIMKK------PLVDPFMINHDGQ--------YWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~~~Ll~~------~~vDatI~~~dG~--------wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
...+.+.||++.++ ..|+....+... ..+=|.+|+.+++ |+|++|... .. .....-.+++.+-
T Consensus 151 ~~~g~i~~y~S~Dl-~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g-~~-~~~~~~~Y~vG~~ 227 (308)
T PF00251_consen 151 DGRGCILLYTSDDL-IHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQG-IE-DNGHGTYYMVGDF 227 (308)
T ss_dssp TTEEEEEEEEESSS-SSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEES-TT-TTTTEEEEEEEEE
T ss_pred cCcceEEEEEcCCc-ccCceeCcccccccccccccccceEEEECCcccccceEEEEEEecccc-cc-cccccceEEeEEe
Confidence 26789999999887 789998775432 3678888988766 788887631 11 1122333344432
Q ss_pred --CCCCCeeC
Q 045656 326 --PFGPWKPH 333 (802)
Q Consensus 326 --plGPW~~h 333 (802)
.-+.|++.
T Consensus 228 d~~~~~f~~~ 237 (308)
T PF00251_consen 228 DFDGGTFTPD 237 (308)
T ss_dssp ETTTTEEEES
T ss_pred cCCCCeeeee
Confidence 45567655
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0019 Score=70.95 Aligned_cols=188 Identities=21% Similarity=0.314 Sum_probs=111.3
Q ss_pred eeCeeeEEECCE--EEEEEEeeeccCCCceEEEEEEeCCCCCceEee-eee--cCC---CceeeeEEEEeCCEEEEEeC-
Q 045656 188 VADPFFYLQGND--LYLFYETKNSITMQGDIGVAKSVDKGATWQQLG-IAL--DED---WHLSFPYVFDYHGQIYMMPE- 258 (802)
Q Consensus 188 ~ADPFll~~~g~--~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g-vvL--de~---~HLSyP~VF~~dG~iYMiPE- 258 (802)
+=-|-+++.+|+ ++++|-..........|++|+|.| |.+|+... ++| +.+ +-.=.|-|.+.+|++||.-.
T Consensus 32 vfNpgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~D-Gi~f~~~~~pil~P~~~~e~~GvEDPRVt~i~d~yymtYta 110 (312)
T PF04041_consen 32 VFNPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDD-GIHFERDPEPILYPDTDYEEWGVEDPRVTKIDDTYYMTYTA 110 (312)
T ss_dssp EEEEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESS-SSS-EE-SS-SBEE-SSTTHTEEEEEEEEEETTEEEEEEEE
T ss_pred EEcCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccC-CcCceECCCCEEccCCCCcccCccceeEEEECCEEEEEEEE
Confidence 445888878887 788887765544445899999988 78897764 334 222 34677999999999999953
Q ss_pred -CCCCCeeEEEEeccCCcCceeeeeccCCC----------ccCCEEE--EECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 259 -SRAKGEVRLYRAVNFPLEWKLEKIIMKKP----------LVDPFMI--NHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP~~We~~~~Ll~~~----------~vDatI~--~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+...-++.|-...+| ..|+.....+... .-|.++| +.+|+|+||.- ...+.+++|++
T Consensus 111 ~~~~~~~~~la~s~D~-~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---------~~~i~la~S~D 180 (312)
T PF04041_consen 111 YSGKGPRIGLATSKDF-KHWERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---------DPSIWLAYSPD 180 (312)
T ss_dssp EESSSEEEEEEEESSS-SSEEEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---------SSSBEEEEESS
T ss_pred ecCCCcccceEEccch-HhhEEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---------CCCEEEEecCC
Confidence 334456777777777 6788766433211 1445555 44999999994 33677777765
Q ss_pred CCCCCeeCCCCCeeeCCC----CCCcccCCccEEE-CCeEEEEcc---cCCCCCCceEEEEEeccCCccceEE
Q 045656 326 PFGPWKPHKKNPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQ---DCAESYGRRVRTFKVEILTKNEYKE 390 (802)
Q Consensus 326 plGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~Q---dC~~~YG~~L~l~~It~Lt~~~y~E 390 (802)
+. .|+.+.. ++....+ ...-..|..++.. +|-|...-. +-...|--++.|+..+ +|++-.-
T Consensus 181 l~-~W~~~~~-~~~~~~~~~~d~~kiG~g~pPi~t~~GwL~iyHG~~~~~~~~Y~~g~~LlD~~--dP~kvi~ 249 (312)
T PF04041_consen 181 LI-HWGNHRE-PLLSPRPGWWDSSKIGAGPPPIKTDEGWLLIYHGNVTDEGRVYRLGAALLDLD--DPTKVIA 249 (312)
T ss_dssp SS-SEEEEBE-TSB--STTSSCSSEEEE-S-EEEETTEEEEEEEEEESSTTTEEEEEEEEE-SS--STTSEEE
T ss_pred cc-ccccccc-ccccCCCCcChhhcccCCCCceEecCCEEEEEeccccCCCCEEEEEEEEEcCC--CCcceEE
Confidence 54 5987753 3333211 1112344566766 564444442 2234665555555443 4444333
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=76.11 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=86.3
Q ss_pred eCeeeEEECCEEEEEEEeeecc-C----CCceEEEEEEeCCCCCceEe--eeeecCC-----CceeeeEEEEeCC-EEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSI-T----MQGDIGVAKSVDKGATWQQL--GIALDED-----WHLSFPYVFDYHG-QIYM 255 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~-~----~~G~I~va~S~D~g~tw~~~--gvvLde~-----~HLSyP~VF~~dG-~iYM 255 (802)
-++-+++.++++++||+..... + .+-.+.++.+.+++.+|+.. ++|+..+ .|+-.|+||.+++ ++||
T Consensus 70 ~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m 149 (437)
T smart00640 70 FSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYM 149 (437)
T ss_pred EEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEE
Confidence 3477788888999999985311 1 12223355566779999987 5777652 4778899998885 9999
Q ss_pred EeC---CCCCCeeEEEEeccCCcCceeeeeccC-------CCccCCEEEEECC-----EEEEEEeCC
Q 045656 256 MPE---SRAKGEVRLYRAVNFPLEWKLEKIIMK-------KPLVDPFMINHDG-----QYWLFGSDH 307 (802)
Q Consensus 256 iPE---ss~sg~l~LYra~~FP~~We~~~~Ll~-------~~~vDatI~~~dG-----~wwLF~S~~ 307 (802)
+=- ....|.+.||+..++ ..|+....+.. ...+=|-+|+.++ +|+|++|..
T Consensus 150 ~~g~~~~~~~G~i~ly~S~Dl-~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 150 VIGASDEDKTGIALLYRSTDL-KNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred EEEEEecCCCeEEEEEECCCc-ccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcC
Confidence 932 123678999999886 68998876543 1357799999988 999999874
|
|
| >COG3940 Predicted beta-xylosidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0065 Score=63.24 Aligned_cols=236 Identities=14% Similarity=0.181 Sum_probs=124.5
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------CCcee
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------DWHLS 242 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------~~HLS 242 (802)
.||.|. --||||++.+++-+|-|--..... .+-+|.-+.+.+ |..-....+|-.. .--.|
T Consensus 6 ~npfie------------qradp~iykh~dg~yyftasvpey-drie~rraktle-glr~aepvvvwrk~esgpms~liw 71 (324)
T COG3940 6 LNPFIE------------QRADPMIYKHNDGYYYFTASVPEY-DRIEVRRAKTLE-GLRNAEPVVVWRKHESGPMSNLIW 71 (324)
T ss_pred CChhhh------------hccCceEEEccCccEEEEeccCcc-ceeeeeeccchh-hhhccCceeEEeccCCCchhhccc
Confidence 488877 349999999887777665543322 223444444444 2211111122221 13378
Q ss_pred eeEEEEeCCEEEEEeCC-----CC----CCeeEEEEec-cCC--cCceeee---eccCCCccCCEEEEECCEEEEEEeCC
Q 045656 243 FPYVFDYHGQIYMMPES-----RA----KGEVRLYRAV-NFP--LEWKLEK---IIMKKPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEs-----s~----sg~l~LYra~-~FP--~~We~~~---~Ll~~~~vDatI~~~dG~wwLF~S~~ 307 (802)
.|.|-..+|++|++-.. .+ +.+.-..++. .-| .+|.... +-.+.=..|||.|+|+|+-|+.....
T Consensus 72 apeih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattfeh~gk~yyvwaqk 151 (324)
T COG3940 72 APEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTFEHNGKLYYVWAQK 151 (324)
T ss_pred ccceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeeeeeCCEEEEEEecc
Confidence 99999999999999321 11 1222233332 223 3575321 11222378999999999855444332
Q ss_pred CCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC-------CCcccCCccEEECCeEEEEcccC--CCCCCceEEEE
Q 045656 308 SGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS-------LGARNGGRPFVYDGNLYRVGQDC--AESYGRRVRTF 378 (802)
Q Consensus 308 ~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~-------~~aR~GG~vF~~dGkLyRp~QdC--~~~YG~~L~l~ 378 (802)
......+.+ ||.|+ ...||+-. ..||.-..+. .---.|..+++.+||++.-.--+ ...|.-+|--.
T Consensus 152 -dp~i~gnsn--iyiae-menpwtik-gepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasatd~nycmgllwa 226 (324)
T COG3940 152 -DPNIKGNSN--IYIAE-MENPWTIK-GEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCMGLLWA 226 (324)
T ss_pred -CCCccCCcc--eEEEe-ccCCceec-CceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEeccccccceeeeeeee
Confidence 122222334 55555 67899854 4677654321 11235677888899998854443 24677766544
Q ss_pred Eec-c-CCccceEEec----cccCCC-CCCccccccccCCCCC-eEEEEeCcc
Q 045656 379 KVE-I-LTKNEYKELE----GRNAWN-GARYHHLDAQQLSSGE-WIAVMDGDR 423 (802)
Q Consensus 379 ~It-~-Lt~~~y~E~~----~~~~w~-~~~~Hhld~~~l~~g~-~i~vvDG~r 423 (802)
+.. + |++.+...++ .-..-| +.|+-|-.+.+-++|+ ...|+-+..
T Consensus 227 nen~dlldpaswtksptpvf~ts~en~qygpghnsftvtedgkhdvlvyharn 279 (324)
T COG3940 227 NENSDLLDPASWTKSPTPVFKTSMENHQYGPGHNSFTVTEDGKHDVLVYHARN 279 (324)
T ss_pred cccCCcCCchhcccCCCcceeeehhccccCCCCCceEecCCCcccEEEEeccc
Confidence 433 2 3444333332 111111 2344454555555664 566665544
|
|
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=64.62 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=107.9
Q ss_pred CCCceEEEEEEeCCCCCceEeeeeecCC----CceeeeEEEEe-CCEEEEEeCCC-------CCCeeEEEEeccCC----
Q 045656 211 TMQGDIGVAKSVDKGATWQQLGIALDED----WHLSFPYVFDY-HGQIYMMPESR-------AKGEVRLYRAVNFP---- 274 (802)
Q Consensus 211 ~~~G~I~va~S~D~g~tw~~~gvvLde~----~HLSyP~VF~~-dG~iYMiPEss-------~sg~l~LYra~~FP---- 274 (802)
...-+|+++.|.| +.+|++.+.++... ...+-+-++.. ||+++|+--.. ..-.++|-+++.--
T Consensus 38 h~~~~wgh~~S~d-lv~W~~~~~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~ 116 (349)
T cd08997 38 HGDARIGYFYSRA-GGNWIDGGKVFPDGLSPGSREWSGSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVN 116 (349)
T ss_pred cCceEEEEEEeCC-CCcccCCCccCCCCcccCCCeEcceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceE
Confidence 4567899999988 99999977766443 34788888755 59999994221 12333444443211
Q ss_pred -cCceeeeeccC---------------------CCccCCEEEEEC--CEEEEEEeCCCCCC-------------------
Q 045656 275 -LEWKLEKIIMK---------------------KPLVDPFMINHD--GQYWLFGSDHSGFG------------------- 311 (802)
Q Consensus 275 -~~We~~~~Ll~---------------------~~~vDatI~~~d--G~wwLF~S~~~~~g------------------- 311 (802)
..|+.+..+++ ...=||-+|+.+ |+|||+...+....
T Consensus 117 ~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~ 196 (349)
T cd08997 117 LSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTV 196 (349)
T ss_pred ecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCccccccccccccccccc
Confidence 23433322221 136799999997 99999987653322
Q ss_pred -----CCCCCcEEEEEEcCC-CCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCc------eEEEEE
Q 045656 312 -----TTQNGQLEIWYSSSP-FGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGR------RVRTFK 379 (802)
Q Consensus 312 -----~~~n~~L~i~~AdSp-lGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~------~L~l~~ 379 (802)
...++.++++.+++. +-+|+-.+ |++....-..-.....+|+.+|++|++.=.+...+-. ++..+-
T Consensus 197 ~~~~a~~~~G~IGia~~~s~dl~~W~~~~--PL~~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~~~g~v 274 (349)
T cd08997 197 KPDGASYQNGNVGIAVAKNDDLTEWKLLP--PLLEANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDGLYGFV 274 (349)
T ss_pred cccccccccceEEEEEecCCCCCCcEEcC--ccccCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCcEEEEE
Confidence 112456788887765 66799766 7764321122377899999999999985422222221 355555
Q ss_pred eccCCccceEE
Q 045656 380 VEILTKNEYKE 390 (802)
Q Consensus 380 It~Lt~~~y~E 390 (802)
.+.|.- -|++
T Consensus 275 sdsl~G-P~~~ 284 (349)
T cd08997 275 SDSLRG-PYKP 284 (349)
T ss_pred eCCCCC-CCcc
Confidence 555542 2444
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >COG3940 Predicted beta-xylosidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.01 Score=61.78 Aligned_cols=169 Identities=18% Similarity=0.434 Sum_probs=102.8
Q ss_pred CCceeeCeeeEEECCEEEEEEEeeecc-C----CCceEEEEEEeCC---CCCceEeeeeecCCCc-eee-eEEEEeCCEE
Q 045656 184 PSNFVADPFFYLQGNDLYLFYETKNSI-T----MQGDIGVAKSVDK---GATWQQLGIALDEDWH-LSF-PYVFDYHGQI 253 (802)
Q Consensus 184 ~~~F~ADPFll~~~g~~ylF~E~~~~~-~----~~G~I~va~S~D~---g~tw~~~gvvLde~~H-LSy-P~VF~~dG~i 253 (802)
....+| |.+-.-+|+||+||.+-... + -+-+.-|++-.++ ...|...|.+ ..+|. +|- --.|+|+|+.
T Consensus 67 s~liwa-peih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqi-kt~wesfsldattfeh~gk~ 144 (324)
T COG3940 67 SNLIWA-PEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQI-KTAWESFSLDATTFEHNGKL 144 (324)
T ss_pred hhcccc-cceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceeccee-ccchhcceeeeeeeeeCCEE
Confidence 334566 88888899999999863322 1 1234445553332 2568888753 33333 222 3479999987
Q ss_pred EEE-e--CCCCCCeeEEEEeccCCcCcee--eeeccCC-----------CccCCEEEEECCEEEEEEeCCCCCCCCCCCc
Q 045656 254 YMM-P--ESRAKGEVRLYRAVNFPLEWKL--EKIIMKK-----------PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQ 317 (802)
Q Consensus 254 YMi-P--Ess~sg~l~LYra~~FP~~We~--~~~Ll~~-----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~ 317 (802)
|.+ + ..+-.|.-.||-|.- -..|.. +++++++ ..++|.+++++|+..+-||..+ +..++-
T Consensus 145 yyvwaqkdp~i~gnsniyiaem-enpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasa---td~nyc 220 (324)
T COG3940 145 YYVWAQKDPNIKGNSNIYIAEM-ENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASA---TDVNYC 220 (324)
T ss_pred EEEEeccCCCccCCcceEEEec-cCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEeccc---ccccee
Confidence 777 4 234446666776642 234543 4554432 3689999999999999998753 233444
Q ss_pred EEEEEE---cCCCCC--CeeCCCCCeeeCC-CCCCcccCCccEEE--CCe
Q 045656 318 LEIWYS---SSPFGP--WKPHKKNPIYNGD-KSLGARNGGRPFVY--DGN 359 (802)
Q Consensus 318 L~i~~A---dSplGP--W~~hp~NPI~~~~-~~~~aR~GG~vF~~--dGk 359 (802)
.++-++ ++++.| |++.| .||.+.. +...-.||.+.|.. |||
T Consensus 221 mgllwanen~dlldpaswtksp-tpvf~ts~en~qygpghnsftvtedgk 269 (324)
T COG3940 221 MGLLWANENSDLLDPASWTKSP-TPVFKTSMENHQYGPGHNSFTVTEDGK 269 (324)
T ss_pred eeeeeecccCCcCCchhcccCC-CcceeeehhccccCCCCCceEecCCCc
Confidence 454444 456665 99887 6888753 12234577888865 564
|
|
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0072 Score=70.10 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=108.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||=.+ ..+|+|+|||--..+... .=+=++++|.| ..+|+...++|-
T Consensus 37 ~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~piaL~------------------------ 91 (486)
T COG1621 37 PTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKD-LVHWEHLPIALA------------------------ 91 (486)
T ss_pred CcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCC-cccceECCceec------------------------
Confidence 46799999985 889999999987664433 33567888866 999999888774
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCC-cEEEEEEcCCCCCCeeCCCCCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNG-QLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~-~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
|..|- -+..+---+.+..+|.-+||||.+-..-..... ...+++++. .+.+++.++|||+
T Consensus 92 -------------Pd~~~-----d~~g~ySGSAV~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~ 152 (486)
T COG1621 92 -------------PDDDY-----DSHGCYSGSAVVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPII 152 (486)
T ss_pred -------------CCCcc-----ccCCceeeeEEEeCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCcee
Confidence 23331 011222334556667777788764321111111 345888877 6678777788888
Q ss_pred eCCCC--CCcccCCc-cEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKS--LGARNGGR-PFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~--~~aR~GG~-vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
..+.. ...| -.+ ++..+|+.|+..---...|...|.+|+.++|..|+|.-..
T Consensus 153 ~~p~~~t~hFR-DPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~~g~~ 207 (486)
T COG1621 153 DQPEGYTPHFR-DPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDDLKNWQFTGEF 207 (486)
T ss_pred cCCCcccccCC-CCcccccCCCcEEEEEEEecCCCCceEEEEeCCCccCcEEEEee
Confidence 75421 0111 145 3455888888766556788899999999999999986554
|
|
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.04 Score=60.75 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=94.9
Q ss_pred CeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCce
Q 045656 136 SWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGD 215 (802)
Q Consensus 136 ~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~ 215 (802)
+=.||++...+.... .+. ..||+...+--+. .-..||=++..+++|||+|++++.. ...
T Consensus 59 ~~~iglA~S~DGi~f------~~~---------~~pil~P~~~~e~----~GvEDPRVt~i~d~yymtYta~~~~--~~~ 117 (312)
T PF04041_consen 59 SSRIGLARSDDGIHF------ERD---------PEPILYPDTDYEE----WGVEDPRVTKIDDTYYMTYTAYSGK--GPR 117 (312)
T ss_dssp EEEEEEEEESSSSS-------EE----------SS-SBEE-SSTTH----TEEEEEEEEEETTEEEEEEEEEESS--SEE
T ss_pred eeEEEEEEccCCcCc------eEC---------CCCEEccCCCCcc----cCccceeEEEECCEEEEEEEEecCC--Ccc
Confidence 447999999886442 121 4788776543332 3489999999999999999998764 467
Q ss_pred EEEEEEeCCCCCceEeeeeecCCC------------ceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeee-
Q 045656 216 IGVAKSVDKGATWQQLGIALDEDW------------HLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI- 282 (802)
Q Consensus 216 I~va~S~D~g~tw~~~gvvLde~~------------HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~- 282 (802)
+++++|.| ..+|+.++.++.... -.-||. +.+|+++|+-. ...+.|-.+.+. ..|+.+..
T Consensus 118 ~~la~s~D-~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~--ki~Gky~m~~r---~~~i~la~S~Dl-~~W~~~~~~ 190 (312)
T PF04041_consen 118 IGLATSKD-FKHWERHGKIFPPFNGNEDYRDFWSKDGALFPE--KINGKYAMLHR---DPSIWLAYSPDL-IHWGNHREP 190 (312)
T ss_dssp EEEEEESS-SSSEEEEECTTTTTCTS-EEEEEEEECCEEEES--EETTEEEEEEE---SSSBEEEEESSS-SSEEEEBET
T ss_pred cceEEccc-hHhhEEeccccCcccccccccccccCceEEEEE--EECCEEEEEEC---CCCEEEEecCCc-ccccccccc
Confidence 88899877 899999986554321 244454 44899999977 556666666444 46887654
Q ss_pred ccCC--------C-ccCCEEEEECCEEEEEEeC
Q 045656 283 IMKK--------P-LVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 283 Ll~~--------~-~vDatI~~~dG~wwLF~S~ 306 (802)
++.. . =..+..++-+.-|.++|..
T Consensus 191 ~~~~~~~~~d~~kiG~g~pPi~t~~GwL~iyHG 223 (312)
T PF04041_consen 191 LLSPRPGWWDSSKIGAGPPPIKTDEGWLLIYHG 223 (312)
T ss_dssp SB--STTSSCSSEEEE-S-EEEETTEEEEEEEE
T ss_pred cccCCCCcChhhcccCCCCceEecCCEEEEEec
Confidence 3321 1 2446778886669989963
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.23 Score=52.23 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=112.7
Q ss_pred ceeeCeeeEE-ECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecC-CCceee----eEEEEeCCEEEEE-
Q 045656 186 NFVADPFFYL-QGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDE-DWHLSF----PYVFDYHGQIYMM- 256 (802)
Q Consensus 186 ~F~ADPFll~-~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde-~~HLSy----P~VF~~dG~iYMi- 256 (802)
.-+.||.++. .+|+++||++...... ....|....|.|+|.+|.....+-.. ...... |-|.-.+|.+++.
T Consensus 46 ~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~ 125 (275)
T PF13088_consen 46 RRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY 125 (275)
T ss_dssp CEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE
T ss_pred CcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE
Confidence 4668999985 5999999995443322 23455568899999999987643322 222222 2234457877775
Q ss_pred -eCCCCCCeeEEEEeccCCcCceeeeeccCC-CccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 257 -PESRAKGEVRLYRAVNFPLEWKLEKIIMKK-PLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 257 -PEss~sg~l~LYra~~FP~~We~~~~Ll~~-~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
.|........++...+.-..|+....+... ...-+++++. +|+.++++-.. .+..+.+++|.+--..|.+
T Consensus 126 ~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~------~~~~~~~~~S~D~G~TWs~- 198 (275)
T PF13088_consen 126 YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE------GNDDIYISRSTDGGRTWSP- 198 (275)
T ss_dssp EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC------SSTEEEEEEESSTTSS-EE-
T ss_pred eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc------CCCcEEEEEECCCCCcCCC-
Confidence 354556778888888887889876654343 4667777765 88999988541 1225666666665567986
Q ss_pred CCCCeeeCCCCCCcccCCcc-EEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEE
Q 045656 334 KKNPIYNGDKSLGARNGGRP-FVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKE 390 (802)
Q Consensus 334 p~NPI~~~~~~~~aR~GG~v-F~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E 390 (802)
|...+.+ ...++.. +.. +|+++.....- .-...|.|+...+ ...++++
T Consensus 199 ---~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~--~~r~~l~l~~S~D-~g~tW~~ 248 (275)
T PF13088_consen 199 ---PQPTNLP---NPNSSISLVRLSDGRLLLVYNNP--DGRSNLSLYVSED-GGKTWSR 248 (275)
T ss_dssp ---EEEEECS---SCCEEEEEEECTTSEEEEEEECS--STSEEEEEEEECT-TCEEEEE
T ss_pred ---ceecccC---cccCCceEEEcCCCCEEEEEECC--CCCCceEEEEEeC-CCCcCCc
Confidence 2211111 1222322 332 78998888732 2256677766543 2334443
|
... |
| >cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.38 Score=52.73 Aligned_cols=184 Identities=18% Similarity=0.204 Sum_probs=113.9
Q ss_pred eeeCeeeEEECCEEEEEEEeeecc-CC---CceEEEEEEeCCCCCceEeeeeecCC---CceeeeEEEEeC-CEEEEE--
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSI-TM---QGDIGVAKSVDKGATWQQLGIALDED---WHLSFPYVFDYH-GQIYMM-- 256 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~-~~---~G~I~va~S~D~g~tw~~~gvvLde~---~HLSyP~VF~~d-G~iYMi-- 256 (802)
.|.=|.++...+.+..|+|.+... .. .-.|.+..|.|.|.+|....++.+.+ .-++.|.++... |++||+
T Consensus 15 ~~RiPsl~~~~~~lla~~e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p~~v~~~~g~l~l~~~ 94 (351)
T cd00260 15 SFRIPSLVCTPGTLLAFADARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDPTVVVDGLGRVFLLVG 94 (351)
T ss_pred EEecceEEEECCEEEEEEEEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcceEEEcCCCCEEEEEE
Confidence 455599998888999999987532 22 34688888999999999986655543 346789998887 999999
Q ss_pred --eCCC---------CCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCCCCCCCCCC
Q 045656 257 --PESR---------AKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 257 --PEss---------~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n 315 (802)
|+.. ....+.+.+..+--..|.....+... ....+.+...+|++.+...... .. ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~--~~-~~ 171 (351)
T cd00260 95 SFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGN--AG-GR 171 (351)
T ss_pred ECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEc--CC-CC
Confidence 3321 23567788887766679754433221 1223345555899887764321 11 11
Q ss_pred CcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 316 GQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
....+.+|++---.|+.-...+. . ..-.-+++++. ||+|++..-. .. +..+.+++.++
T Consensus 172 ~~~~~~~S~D~G~tW~~~~~~~~--~----~~~~e~~i~el~dG~l~~~~R~-~~--~~~~~~~~S~D 230 (351)
T cd00260 172 VSSAIIYSDDSGKTWKLGEGVND--A----GGCSECSVVELSDGKLYMYTRD-NS--GGRRPVYESRD 230 (351)
T ss_pred EEEEEEEECCCCCCcEECCCCCC--C----CCCcCCEEEEecCCEEEEEEee-CC--CCcEEEEEEcC
Confidence 24556777765446975332221 0 01123677887 9999886544 22 34455555554
|
They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| >PF13810 DUF4185: Domain of unknown function (DUF4185) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.088 Score=58.29 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=87.6
Q ss_pred EECCEEEEEEEeeeccCC-Cc-----eEEEEEEeCCCCCceEeeeeecCCC--c-----eeeeEE----EEeCCEEEEE-
Q 045656 195 LQGNDLYLFYETKNSITM-QG-----DIGVAKSVDKGATWQQLGIALDEDW--H-----LSFPYV----FDYHGQIYMM- 256 (802)
Q Consensus 195 ~~~g~~ylF~E~~~~~~~-~G-----~I~va~S~D~g~tw~~~gvvLde~~--H-----LSyP~V----F~~dG~iYMi- 256 (802)
.-+++.||.|-..+.-.. .| .=+++.|+|++.+|+...-....+. | ...+|- ...||-+||+
T Consensus 102 ~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~g 181 (316)
T PF13810_consen 102 SVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYG 181 (316)
T ss_pred EECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEe
Confidence 467899998887643222 10 2235888899999998762222221 1 112332 2468889999
Q ss_pred eCCCCCCeeEEEEecc----CCcCcee----------e----eeccCCCccCCEEEEE--CCEEEEEEeCCCCCCCCCCC
Q 045656 257 PESRAKGEVRLYRAVN----FPLEWKL----------E----KIIMKKPLVDPFMINH--DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 257 PEss~sg~l~LYra~~----FP~~We~----------~----~~Ll~~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~ 316 (802)
-+....+.+.|+|... -+..||. . +.++.+++---++..+ +|+|-|.|.+. .+.
T Consensus 182 t~~~R~g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~------~~~ 255 (316)
T PF13810_consen 182 TPFGRNGGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDA------GTG 255 (316)
T ss_pred CCCCCCCcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecc------cCC
Confidence 3455589999999742 1223332 1 1244444445566777 99999999763 346
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeC
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNG 341 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~ 341 (802)
.+.+.+|++|.|||.+.+ +++..
T Consensus 256 ~I~~RtA~~P~GpWs~~~--~l~~~ 278 (316)
T PF13810_consen 256 GIVLRTAPSPTGPWSEPK--PLVTV 278 (316)
T ss_pred cEEEEecCCCCCCCCCCe--eEEeC
Confidence 899999999999998533 44443
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0031 Score=58.87 Aligned_cols=111 Identities=18% Similarity=0.118 Sum_probs=78.8
Q ss_pred EEEEEecccChhhHHHHHHHhcCC-CCcceEEEEeCCCCCCCCC---C-CCCCCcEEEEEcCCcC--ccccCccCCCCCc
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRC-SSVKEIVVVWNKGEPPKLS---D-LDSAVPVRIRVEKQNS--LNNRFKLDPLIKT 629 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~-p~v~kIvVVWn~~~pP~~~---~-~~s~vPVrv~~~~~NS--LNNRF~P~~~I~T 629 (802)
||||-||+ +...|.+.|+.+.+. ..-.||+||-|+..+.... . .+...+++++..+.|. -.+|-.-....++
T Consensus 1 Svvip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~ 79 (169)
T PF00535_consen 1 SVVIPTYN-EAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKG 79 (169)
T ss_dssp EEEEEESS--TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--S
T ss_pred CEEEEeeC-CHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccce
Confidence 79999998 577888888877654 6678999998887322111 1 1246789999888773 2344444567889
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccc
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLV 668 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h 668 (802)
+-|+.+|||..++.+-|+-.++.-++++..+|.......
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 118 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYI 118 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEe
Confidence 999999999999999999999999998777666555443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.65 Score=51.14 Aligned_cols=206 Identities=23% Similarity=0.296 Sum_probs=119.2
Q ss_pred CCCeeccccccCCCCCCc----eeeCeeeEEECCEEEEEEEe----eeccCCCceEEEEEEeCCCCC-ceEee-eee-c-
Q 045656 169 ANPIMTCASVSSAGFPSN----FVADPFFYLQGNDLYLFYET----KNSITMQGDIGVAKSVDKGAT-WQQLG-IAL-D- 236 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~----F~ADPFll~~~g~~ylF~E~----~~~~~~~G~I~va~S~D~g~t-w~~~g-vvL-d- 236 (802)
+||+++..++.- ...+ .+=-|-+...++++.|++-. +.+.+..++|.++.|.| |.. |+... +++ .
T Consensus 10 ~npIi~~~~~~~--~~~~~~~~~vFNpav~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~d-gi~~~~~e~ep~~~P~ 86 (314)
T COG2152 10 TNPIITRSDYIP--PHARFIVVSVFNPAVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDD-GIGEFEIEPEPTLWPA 86 (314)
T ss_pred CCCceeeccccC--CCCceeEEEEecceeEEECCEEEEEEEEeccccccCccceEEEEEeccc-CCCceecCCcceEecC
Confidence 689988666532 1233 45568888999999999876 22234679999999877 666 65433 222 2
Q ss_pred ----CCCceeeeEEEEeCCEEEEEeCC--CCCCeeEEEEeccCCcCceeeeeccCCCccCCEEE--EECCEEEEEEeCCC
Q 045656 237 ----EDWHLSFPYVFDYHGQIYMMPES--RAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMI--NHDGQYWLFGSDHS 308 (802)
Q Consensus 237 ----e~~HLSyP~VF~~dG~iYMiPEs--s~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~--~~dG~wwLF~S~~~ 308 (802)
|.|-.=.|-|+..++++||.--. ....+.+|--..+|+. |++...++....-|+.++ +.+|+|.|+.-...
T Consensus 87 ~~~~e~~G~EDPRvt~I~~~y~mtYTa~s~~g~~~~la~t~~f~n-~~rig~i~~pdn~~~~lfP~~~ngk~~~lhr~~~ 165 (314)
T COG2152 87 NYPYEIYGIEDPRVTKIGGRYYMTYTAYSDKGPRLALAVTKDFLN-WERIGAIFPPDNKDAALFPKKINGKYALLHRPVL 165 (314)
T ss_pred CCchhhhcccCceEEEECCEEEEEEEecCCCCcccchhhhhhhhh-hhhcccccCCCCCCceEeeEEecCcEEEEEeecc
Confidence 12445569999999999999654 4445566766778865 998776443244455554 45999999984321
Q ss_pred CCCCCCCCcEEEEEEcCCCC-CCeeCCC--CCeeeCC-CCCCcccCCccEEE-CCeEEE---EcccCCCCCCceEEEEEe
Q 045656 309 GFGTTQNGQLEIWYSSSPFG-PWKPHKK--NPIYNGD-KSLGARNGGRPFVY-DGNLYR---VGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplG-PW~~hp~--NPI~~~~-~~~~aR~GG~vF~~-dGkLyR---p~QdC~~~YG~~L~l~~I 380 (802)
+... ....+|.|-|+.. .|.-|.. -++..+. ....-..|-.+++- +|-|.+ ..++|+ .|=-++.++..
T Consensus 166 --~~~~-~~~niwia~S~dl~~w~~~~~~l~~~~~~~~d~~KIG~g~~Pikt~egwLvlyHgv~~~~~-~Yr~GaALlDl 241 (314)
T COG2152 166 --GEYG-MKGNIWIAFSPDLEHWGIHRKLLGPRMGGWWDELKIGWGTPPIKTEEGWLVLYHGVDETLT-VYRLGAALLDL 241 (314)
T ss_pred --cccC-ccCceEEEEcCCccCCCccceeeccccCCcchhhhccCCCCCcCcccceEEEEeeccCccc-eEEeeeEEEcC
Confidence 1111 0233555555533 4766542 1111100 00111222234533 776654 233333 57777777766
Q ss_pred cc
Q 045656 381 EI 382 (802)
Q Consensus 381 t~ 382 (802)
++
T Consensus 242 ed 243 (314)
T COG2152 242 ED 243 (314)
T ss_pred CC
Confidence 54
|
|
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.71 Score=49.42 Aligned_cols=198 Identities=19% Similarity=0.262 Sum_probs=117.7
Q ss_pred CCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee----ecCCCce
Q 045656 166 WPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA----LDEDWHL 241 (802)
Q Consensus 166 w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv----Lde~~HL 241 (802)
|-...|++..++ + .--+-||-++.++|+++||++..+....=|-.....+. +|.+.+.+ |+. .-
T Consensus 9 WtStg~L~~Pk~----g--~~slKD~T~V~ynGk~~VyAtt~d~~~~y~sm~f~~Ft----dws~~~sA~q~~m~~--~~ 76 (271)
T PF03664_consen 9 WTSTGPLAQPKS----G--WVSLKDFTIVPYNGKHHVYATTADTGGGYGSMNFGPFT----DWSQMASASQNYMDQ--SA 76 (271)
T ss_pred eccCCccccCCC----C--ceeccCceEEeECCEEEEEEEeccCCCccceEeeeccC----CHHHhhccccccCCc--cc
Confidence 444556655333 1 12357999999999999999997654333323333322 35443321 222 24
Q ss_pred eeeEEEEe--CCEEEEEeCCCCCCeeEEEEeccC---CcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCC
Q 045656 242 SFPYVFDY--HGQIYMMPESRAKGEVRLYRAVNF---PLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSG 309 (802)
Q Consensus 242 SyP~VF~~--dG~iYMiPEss~sg~l~LYra~~F---P~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~ 309 (802)
-+|.||-. .+.+||+-+... .---|+...- |..|...+.|.. ...+|.+++-.+-.-|||.++-
T Consensus 77 vAP~vFYFaPk~~W~L~yQwg~--~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~D-- 152 (271)
T PF03664_consen 77 VAPQVFYFAPKNIWYLAYQWGP--AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGD-- 152 (271)
T ss_pred ccceEEEecCCcEEEEEEecCC--CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCC--
Confidence 57998644 678999976442 2235666544 557988877642 2479999999999999999762
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCC-CCeeeC-CCCCCcccCCccEEEC--CeEEEEcccCCCCCCceEEEEEeccCC-
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKK-NPIYNG-DKSLGARNGGRPFVYD--GNLYRVGQDCAESYGRRVRTFKVEILT- 384 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~-NPI~~~-~~~~~aR~GG~vF~~d--GkLyRp~QdC~~~YG~~L~l~~It~Lt- 384 (802)
|+ .||+|..++|.+-.--. ++++.. +....-=+|..|++.+ +++.++ =+|-+.=||-.+-+-.+.|+
T Consensus 153 -----nG--kiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmi-VEaiGs~gRyFRSfTa~sL~G 224 (271)
T PF03664_consen 153 -----NG--KIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMI-VEAIGSDGRYFRSFTATSLDG 224 (271)
T ss_pred -----CC--cEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEE-EEEecCCCcEEEeeecCCCCC
Confidence 32 47899999987744333 454432 1111122456666663 344443 34544445666666666664
Q ss_pred ccc
Q 045656 385 KNE 387 (802)
Q Consensus 385 ~~~ 387 (802)
+|+
T Consensus 225 ~Wt 227 (271)
T PF03664_consen 225 PWT 227 (271)
T ss_pred cce
Confidence 443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
| >cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.4 Score=46.54 Aligned_cols=190 Identities=14% Similarity=0.219 Sum_probs=109.3
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeecc---------CCCceEEEEEEeCCCCCceEeeeeecC----CCceeeeE----EE
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNSI---------TMQGDIGVAKSVDKGATWQQLGIALDE----DWHLSFPY----VF 247 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~~---------~~~G~I~va~S~D~g~tw~~~gvvLde----~~HLSyP~----VF 247 (802)
..+-||.++... ++++||+...... .....+.+..|.|+|.+|.....+... .+...+|- |.
T Consensus 74 ~~~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~ 153 (351)
T cd00260 74 SRVKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQ 153 (351)
T ss_pred CcEEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEE
Confidence 345789999887 9999999876432 124578889999999999876544333 23333322 33
Q ss_pred EeCCEEEEEeCC--C-CCCeeEEEEeccCCcCceeeeeccC-CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEE
Q 045656 248 DYHGQIYMMPES--R-AKGEVRLYRAVNFPLEWKLEKIIMK-KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWY 322 (802)
Q Consensus 248 ~~dG~iYMiPEs--s-~sg~l~LYra~~FP~~We~~~~Ll~-~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~ 322 (802)
..+|.++|--.. . ......+..+.+-=..|+....... .....++|++. ||+.+|+..... .....+++
T Consensus 154 l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~------~~~~~~~~ 227 (351)
T cd00260 154 MKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNS------GGRRPVYE 227 (351)
T ss_pred ecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCC------CCcEEEEE
Confidence 446776655222 1 1223344445554457976443333 44678999999 999988875421 34667888
Q ss_pred EcCCCCCCeeCCCCCeee-CCCCCCcccC--CccEEE--C-C-eEEEEcccCCCCCCceEEEEEec
Q 045656 323 SSSPFGPWKPHKKNPIYN-GDKSLGARNG--GRPFVY--D-G-NLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 323 AdSplGPW~~hp~NPI~~-~~~~~~aR~G--G~vF~~--d-G-kLyRp~QdC~~~YG~~L~l~~It 381 (802)
|++---.|++....+... +.......++ |.++.. + | ++....+......=..+.+.-.+
T Consensus 228 S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~ 293 (351)
T cd00260 228 SRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTD 293 (351)
T ss_pred EcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEe
Confidence 876544798755432210 0000011223 555544 2 4 55666666554344455555443
|
They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.046 Score=54.00 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=73.0
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC----CC-CCCCcEEEEEcCCcC-c-cccCccCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS----DL-DSAVPVRIRVEKQNS-L-NNRFKLDPL 626 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~----~~-~s~vPVrv~~~~~NS-L-NNRF~P~~~ 626 (802)
++||+|-+|++.+..|.+.|+.+.+...- -+|+||-++...+... .+ .....++++..+.|. . ..|=.-...
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 81 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALEL 81 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHh
Confidence 48999999984337788888888664433 3899998876443221 11 122346666555542 2 111112235
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
.++|-|+.+|+|..+.++-|+...+...++|+.-+.+..
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~ 120 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSD 120 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEcc
Confidence 678999999999999999999999999777765333333
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.15 Score=52.51 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=69.8
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC---CCCCCCcEEEEEcCCcC--ccccCccC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS---DLDSAVPVRIRVEKQNS--LNNRFKLD 624 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~---~~~s~vPVrv~~~~~NS--LNNRF~P~ 624 (802)
...+||||-+|+ +...|.+.|+.+.+-... -||+||=++....... .+... .|+++..+.|. -.+|-.-.
T Consensus 28 ~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~v~~i~~~~~~g~~~a~n~gi 105 (251)
T cd06439 28 LPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-GVKLLRFPERRGKAAALNRAL 105 (251)
T ss_pred CCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-cEEEEEcCCCCChHHHHHHHH
Confidence 457999999998 667788888887553322 3788884443332221 12112 57777666542 23333334
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 625 PLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 625 ~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
...++|.|+.+|+|..++++.|+-....++....-+|+
T Consensus 106 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 143 (251)
T cd06439 106 ALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVS 143 (251)
T ss_pred HHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEE
Confidence 56778999999999999999898888777533323443
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.12 Score=52.01 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=70.5
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcc---eEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcCcc---ccCccC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVK---EIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNSLN---NRFKLD 624 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~---kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NSLN---NRF~P~ 624 (802)
+.+|+|-+|++....|++.++.+.+...-. ||+|| .+.+...... +....+++++..+.|... ++=.-.
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVL-DDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEE-cCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHH
Confidence 479999999844456888888887766655 78887 4433322211 222224555554444321 111112
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeec
Q 045656 625 PLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGF 663 (802)
Q Consensus 625 ~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF 663 (802)
...+.|-|+.+|+|..++++.|+.....+.++|+- +|+.
T Consensus 81 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~ 120 (234)
T cd06421 81 AHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQT 120 (234)
T ss_pred HhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEec
Confidence 34589999999999999999999999999987664 5543
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.82 Score=46.37 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=65.3
Q ss_pred EEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC-CC-CCCcEEEEEcCCcC-----ccccCccCCCCCcc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD-LD-SAVPVRIRVEKQNS-----LNNRFKLDPLIKTR 630 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~-~~-s~vPVrv~~~~~NS-----LNNRF~P~~~I~T~ 630 (802)
+||-+|+..+..|.+.|+.+.+- ..+|+||=|+.. +.... .. ...+++++..+.|. +|.=+.-.....+|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d 77 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGAD 77 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCC
Confidence 47889985447888888887764 678988844332 22221 11 24567777766552 11111111112569
Q ss_pred EEEEecCCcccCHHHHHHHHHHHhhC---CCceeecccccc
Q 045656 631 GVLELDDDIMMTCDDIERGFQVWRQH---PDRIVGFYPRLV 668 (802)
Q Consensus 631 AVLslDDDv~l~~deLeFAF~vWr~~---PdRLVGF~~R~h 668 (802)
-|+.+|||+.++++.|+... .|... -..+..+.|+..
T Consensus 78 ~v~~lD~D~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~ 117 (237)
T cd02526 78 YVLLFDQDSVPPPDMVEKLL-AYKILSDKNSNIGAVGPRII 117 (237)
T ss_pred EEEEECCCCCcCHhHHHHHH-HHHHhhccCCCeEEEeeeEE
Confidence 99999999999999999997 44432 233444555443
|
Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.23 Score=49.36 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=61.5
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCC----CCCCCCcEEEEEcCCcC-----ccccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLS----DLDSAVPVRIRVEKQNS-----LNNRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~----~~~s~vPVrv~~~~~NS-----LNNRF~P~~~I 627 (802)
|||-||+ +...|.+.|+.+.+... -.+|+|+ ++....... .+....+++++..++|. +|.=+.--...
T Consensus 1 viI~~~n-~~~~l~~~l~sl~~q~~~~~eiiiv-D~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~ 78 (202)
T cd04185 1 AVVVTYN-RLDLLKECLDALLAQTRPPDHIIVI-DNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred CEEEeeC-CHHHHHHHHHHHHhccCCCceEEEE-ECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhcc
Confidence 5889998 66778888888865432 3466555 554433222 12233457777666552 22212111145
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHh
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWR 654 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr 654 (802)
..|.|+.+|||..++++-|+...+.++
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 689999999999999999999888887
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.17 Score=56.96 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCCCC-CcEEEEEcCCcC--ccccCccCC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLDSA-VPVRIRVEKQNS--LNNRFKLDP 625 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~s~-vPVrv~~~~~NS--LNNRF~P~~ 625 (802)
...+||+|-+|+ +...+.+.++...+..+- -||+||=++..+.... .+... ..++++..++|. -.++=.-..
T Consensus 53 ~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~ 131 (420)
T PRK11204 53 YPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAA 131 (420)
T ss_pred CCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999998 466788888877654332 4888887654433222 11122 237777644432 111111123
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccccc
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPRLV 668 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R~h 668 (802)
..+.|-|+.+|+|..++++-|+...+..+++|+- +|+-.++..
T Consensus 132 ~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~ 175 (420)
T PRK11204 132 AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIR 175 (420)
T ss_pred HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceec
Confidence 4678999999999999999999998888877753 555555543
|
|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.17 Score=54.29 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=72.9
Q ss_pred EEEEEecccChhhHHHHHHHhcC-CC-C-cceEEEEeCCCCCCCCCCC------CCCCcEEEEEcCCcC--ccccCccCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSR-CS-S-VKEIVVVWNKGEPPKLSDL------DSAVPVRIRVEKQNS--LNNRFKLDP 625 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~-~p-~-v~kIvVVWn~~~pP~~~~~------~s~vPVrv~~~~~NS--LNNRF~P~~ 625 (802)
+|||.+|+.....|.+.|+.+.+ .+ . ..|||||=|+...+..... .....|+++..+.|. -..|=.-..
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 58999998543788888887753 32 2 2489888776544332211 123468888777653 111111123
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
.-+.|-|+.+|+|+.++++-|+-..+.-.++|..+|+
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~ 117 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVC 117 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 4578999999999999999999999988899998887
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.52 Score=47.21 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=64.9
Q ss_pred eEEEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCCCCCCCCcEEEEEcCCcCccccCccCCCCCccEEEE
Q 045656 556 FTMLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLE 634 (802)
Q Consensus 556 FTvvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~~~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLs 634 (802)
.||+|-+|+ +...|...|+.+.+-. .--+|+|| ++...+...+.-....+++...+.+.=..|=.-....+++-|+.
T Consensus 1 vsvii~~~n-~~~~l~~~l~sl~~q~~~~~evivv-dd~s~d~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~~~i~~ 78 (221)
T cd02522 1 LSIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVV-DGGSTDGTVAIARSAGVVVISSPKGRARQMNAGAAAARGDWLLF 78 (221)
T ss_pred CEEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEE-eCCCCccHHHHHhcCCeEEEeCCcCHHHHHHHHHHhccCCEEEE
Confidence 489999998 4456766676665432 34578888 55443322221112445555444332122222334567999999
Q ss_pred ecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 635 LDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 635 lDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
+|+|..++.+-|+..+...+..+. .+|...
T Consensus 79 ~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~ 108 (221)
T cd02522 79 LHADTRLPPDWDAAIIETLRADGA-VAGAFR 108 (221)
T ss_pred EcCCCCCChhHHHHHHHHhhcCCc-EEEEEE
Confidence 999999999999988776665544 555443
|
Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.4 Score=44.52 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=103.3
Q ss_pred CEEEEEEEeeeccCCCceEEEEEE--eCCCCCceEeeeeecCC---CceeeeEEEE-eCCEEEEEe----CCC--CCCee
Q 045656 198 NDLYLFYETKNSITMQGDIGVAKS--VDKGATWQQLGIALDED---WHLSFPYVFD-YHGQIYMMP----ESR--AKGEV 265 (802)
Q Consensus 198 g~~ylF~E~~~~~~~~G~I~va~S--~D~g~tw~~~gvvLde~---~HLSyP~VF~-~dG~iYMiP----Ess--~sg~l 265 (802)
|+++++++. ....+..+|.+..| +|.|.+|....+|.+-+ ..+.-|.++. .+|+++|+= ... ....+
T Consensus 1 G~l~a~~~~-~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~ 79 (275)
T PF13088_consen 1 GRLLAVWEG-GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRI 79 (275)
T ss_dssp SEEEEEEEE-SSCSCCEEEEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEE
T ss_pred CeEEEEEEC-CcccCCCCEEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeE
Confidence 567888887 33334667777888 99999999998878766 6688999875 589999984 111 22333
Q ss_pred EEEEeccCCcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 266 RLYRAVNFPLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 266 ~LYra~~FP~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
..++..+--..|.....|.. .+.-+..+...+|++++-+... ........++++++---.|+.....+
T Consensus 80 ~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~----~~~~~~~~~~~S~D~G~tW~~~~~~~- 154 (275)
T PF13088_consen 80 YYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHE----SGGSFSAFVYYSDDGGKTWSSGSPIP- 154 (275)
T ss_dssp EEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEE----SSCEEEEEEEEESSTTSSEEEEEECE-
T ss_pred EEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeec----cccCcceEEEEeCCCCceeecccccc-
Confidence 34777776678987654332 1233334566699988875431 11224566777776666797643211
Q ss_pred eeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 339 YNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 339 ~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
.. ..-.-..++.. ||+++....+.. ...+.+.+.++
T Consensus 155 -~~----~~~~e~~~~~~~dG~l~~~~R~~~---~~~~~~~~S~D 191 (275)
T PF13088_consen 155 -DG----QGECEPSIVELPDGRLLAVFRTEG---NDDIYISRSTD 191 (275)
T ss_dssp -CS----EEEEEEEEEEETTSEEEEEEEECS---STEEEEEEESS
T ss_pred -cc----CCcceeEEEECCCCcEEEEEEccC---CCcEEEEEECC
Confidence 10 00111233333 789988887741 11555555554
|
... |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.37 Score=48.83 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=69.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCC---CcceEEEEeCCCCCCCCC---CC-CCCCcEEEEEcCCcCcc-ccCccCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCS---SVKEIVVVWNKGEPPKLS---DL-DSAVPVRIRVEKQNSLN-NRFKLDPL 626 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p---~v~kIvVVWn~~~pP~~~---~~-~s~vPVrv~~~~~NSLN-NRF~P~~~ 626 (802)
+++|||-+|+ +...|.+.++.+.+-. .--||+||=|+....... .+ .....|+++..+.+... .+=.-...
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~ 79 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRN 79 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHH
Confidence 4799999998 5667888888875432 345888883332222111 11 12234777755443321 11111234
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
.++|-|+.+|||..++++.|+...+.-++.+..+|+...
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 589999999999999999999988877766666665443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.5 Score=45.78 Aligned_cols=141 Identities=17% Similarity=0.293 Sum_probs=79.1
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-------CEEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-------GQIYM 255 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-------G~iYM 255 (802)
...+.+|..+..++++||++..++... ....|-++++.+.+.+|.....++.+..+ +-...+--. +...+
T Consensus 57 ~v~v~rPTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~-~~~~figgGGSGV~m~dGTLV 135 (310)
T PF13859_consen 57 RVDVSRPTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQ-SWKQFIGGGGSGVVMEDGTLV 135 (310)
T ss_dssp T-EEEEEEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-E-EEEEEEE-SEE-EE-TTS-EE
T ss_pred ccccceeeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhcc-ccceeecCCCCceEEcCCCEE
Confidence 346779999999999999999987532 34567788888888899887765554431 111223222 12222
Q ss_pred Ee-CC---CCC--CeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCC
Q 045656 256 MP-ES---RAK--GEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328 (802)
Q Consensus 256 iP-Es---s~s--g~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplG 328 (802)
+| |. ... -.+.+|- ++--..|++-+-.-.....||+|++. +|+--|.+... +++.-+|.|.+-=-
T Consensus 136 FPv~a~~~~~~~~~SlIiYS-~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~-------~g~rrVYeS~DmG~ 207 (310)
T PF13859_consen 136 FPVQATKKNGDGTVSLIIYS-TDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACD-------DGRRRVYESGDMGT 207 (310)
T ss_dssp EEEEEEETT---EEEEEEEE-SSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-T-------TS---EEEESSTTS
T ss_pred EEEeeeccCccceEEEEEEE-CCCccceEeccccCCCCcceEEEEeccCCeeEEEEecc-------cceEEEEEEcccce
Confidence 34 21 222 3456674 45457899876655677899999999 89999987541 33456888765444
Q ss_pred CCeeCC
Q 045656 329 PWKPHK 334 (802)
Q Consensus 329 PW~~hp 334 (802)
.|++..
T Consensus 208 tWtea~ 213 (310)
T PF13859_consen 208 TWTEAL 213 (310)
T ss_dssp S-EE-T
T ss_pred ehhhcc
Confidence 699854
|
|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.18 Score=46.87 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=68.0
Q ss_pred EEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCCC---C-CC-CCcEEEEEcCCc--CccccCccCCCCCc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLSD---L-DS-AVPVRIRVEKQN--SLNNRFKLDPLIKT 629 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~~---~-~s-~vPVrv~~~~~N--SLNNRF~P~~~I~T 629 (802)
|+|-+|+ +...|...|+.+.+-. .--+|+||-++........ . .. ...+.++..++| .-.+|-.-....++
T Consensus 1 Viip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 1 IIVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred CeecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence 5788998 5577877788775532 3468999977754332221 1 11 123444444443 23333334456699
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccccc
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRL 667 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~ 667 (802)
|.|+.+|+|..+..+.|+-....+.+.++ +.+..++.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~~-~~~v~~~~ 116 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFADPK-VGAVQGRV 116 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccCCC-eeeEeeeE
Confidence 99999999999999999887677777655 34444443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.26 Score=49.89 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=65.7
Q ss_pred eEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC---CCCCCcEEEEEcCCcC-ccccCccCCCCCccE
Q 045656 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD---LDSAVPVRIRVEKQNS-LNNRFKLDPLIKTRG 631 (802)
Q Consensus 556 FTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~---~~s~vPVrv~~~~~NS-LNNRF~P~~~I~T~A 631 (802)
.||||-+|+.....|.+.|+++.+.. -.+|+||=++...+.... ......++++..+... -+++-.-....++|-
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~a~~d~ 80 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRHVTTDI 80 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 68999999854378888888886643 458888855443332221 1122335555433322 222222334568999
Q ss_pred EEEecCCcccCHHHHHHHHHHHhhCC
Q 045656 632 VLELDDDIMMTCDDIERGFQVWRQHP 657 (802)
Q Consensus 632 VLslDDDv~l~~deLeFAF~vWr~~P 657 (802)
|+.+|||..+..+.|+-..+..+ +|
T Consensus 81 v~~lD~D~~~~~~~l~~l~~~~~-~~ 105 (235)
T cd06434 81 VVLLDSDTVWPPNALPEMLKPFE-DP 105 (235)
T ss_pred EEEECCCceeChhHHHHHHHhcc-CC
Confidence 99999999999999999998887 44
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A | Back alignment and domain information |
|---|
Probab=92.16 E-value=10 Score=42.09 Aligned_cols=184 Identities=20% Similarity=0.291 Sum_probs=96.6
Q ss_pred eeeEEECCEEEEEEEeeecc-CCC--ceEEEEEEeCCCCCceEeeeeecC-----CCceeeeEEEEeCCEEEEEeCC---
Q 045656 191 PFFYLQGNDLYLFYETKNSI-TMQ--GDIGVAKSVDKGATWQQLGIALDE-----DWHLSFPYVFDYHGQIYMMPES--- 259 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~-~~~--G~I~va~S~D~g~tw~~~gvvLde-----~~HLSyP~VF~~dG~iYMiPEs--- 259 (802)
|=++.-+|.+..|+|++.+. ... -.|+...+.+++.+|+....+++. .-+++-|-....++++||+-.+
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 77888899999999998553 223 444555577889999987766643 2447889999999999999643
Q ss_pred ---CCCCeeEEEEeccCCcCceeeeeccCCCc---------cCCEEEEECCE--EEEEEeCCCCCCCCCCCc-EE-EEEE
Q 045656 260 ---RAKGEVRLYRAVNFPLEWKLEKIIMKKPL---------VDPFMINHDGQ--YWLFGSDHSGFGTTQNGQ-LE-IWYS 323 (802)
Q Consensus 260 ---s~sg~l~LYra~~FP~~We~~~~Ll~~~~---------vDatI~~~dG~--wwLF~S~~~~~g~~~n~~-L~-i~~A 323 (802)
...-.+.|++..+--.+|.....|..... -.+-|.-.||. +=+-.+.. .+.+ .. |-||
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~------~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKK------NGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEET------T---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeecc------CccceEEEEEEE
Confidence 23345788876543334765443322111 11112222332 11112221 1111 22 5556
Q ss_pred cCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 324 SSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 324 dSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.+---.|+-...-| . ..++ ..+++++ +|+|.+.+. |. +| .-++||..++-. +..|-.
T Consensus 156 ~d~g~~W~lskg~s---~---~gC~-~psv~EWe~gkLlM~~~-c~--~g-~rrVYeS~DmG~-tWtea~ 213 (310)
T PF13859_consen 156 TDDGKTWKLSKGMS---P---AGCS-DPSVVEWEDGKLLMMTA-CD--DG-RRRVYESGDMGT-TWTEAL 213 (310)
T ss_dssp SSTTSS-EE-S----------TT-E-EEEEEEE-TTEEEEEEE--T--TS----EEEESSTTS-S-EE-T
T ss_pred CCCccceEeccccC---C---CCcc-eEEEEeccCCeeEEEEe-cc--cc-eEEEEEEcccce-ehhhcc
Confidence 65566798655333 0 1233 4788999 899999986 54 23 568999988854 234544
|
|
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=92.15 E-value=3.9 Score=44.02 Aligned_cols=157 Identities=21% Similarity=0.356 Sum_probs=95.3
Q ss_pred eeeE--EECCEEEEEEEeeeccCCCceEEEEEEeC--CCCCceEeeeee-----cCCCceeeeEEEEeCCEEEEEeCCCC
Q 045656 191 PFFY--LQGNDLYLFYETKNSITMQGDIGVAKSVD--KGATWQQLGIAL-----DEDWHLSFPYVFDYHGQIYMMPESRA 261 (802)
Q Consensus 191 PFll--~~~g~~ylF~E~~~~~~~~G~I~va~S~D--~g~tw~~~gvvL-----de~~HLSyP~VF~~dG~iYMiPEss~ 261 (802)
|-++ ...+.|||.|.. +....+..++.| +-..|....... ....--....|+-++-..||.--...
T Consensus 79 P~vFYFaPk~~W~L~yQw-----g~~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~Dn 153 (271)
T PF03664_consen 79 PQVFYFAPKNIWYLAYQW-----GPAAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDN 153 (271)
T ss_pred ceEEEecCCcEEEEEEec-----CCCcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCC
Confidence 7665 678899998874 222334445555 235576655432 22233467788888888999854322
Q ss_pred CCeeEEEEec----cCCcCceeee-eccCC----CccCCEEEEE--CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 262 KGEVRLYRAV----NFPLEWKLEK-IIMKK----PLVDPFMINH--DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 262 sg~l~LYra~----~FP~~We~~~-~Ll~~----~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
| .|||+. +||..+.-.. ++++. -.+.+.|.+. .++|.|+-=.. |... .-.--|+|+++-|+|
T Consensus 154 -G--kiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEai---Gs~g-RyFRSfTa~sL~G~W 226 (271)
T PF03664_consen 154 -G--KIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEAI---GSDG-RYFRSFTATSLDGPW 226 (271)
T ss_pred -C--cEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEEe---cCCC-cEEEeeecCCCCCcc
Confidence 2 578875 8999886444 34432 3677788877 35788887443 3211 233478999999999
Q ss_pred eeCC---CCCeeeCCCCCCcccCCccEEE---CCeEEEEcc
Q 045656 331 KPHK---KNPIYNGDKSLGARNGGRPFVY---DGNLYRVGQ 365 (802)
Q Consensus 331 ~~hp---~NPI~~~~~~~~aR~GG~vF~~---dGkLyRp~Q 365 (802)
++.. .||.... -|-|..-.. -|.|+|-.-
T Consensus 227 tp~A~tEsnPFAg~------aNsg~~WT~dISHGeliR~~~ 261 (271)
T PF03664_consen 227 TPQAATESNPFAGK------ANSGATWTNDISHGELIRSGP 261 (271)
T ss_pred eeccccccCCcccc------ccCCCccccccccceeeecCC
Confidence 9877 4664332 223444433 377777443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.33 Score=45.64 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=63.7
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCCC-CCCCcEEEEEcCCcC--ccccCccCCCCCccEEE
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSDL-DSAVPVRIRVEKQNS--LNNRFKLDPLIKTRGVL 633 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~~-~s~vPVrv~~~~~NS--LNNRF~P~~~I~T~AVL 633 (802)
|+|.+|+ |...|.+.++.+.+... -.+|+|+=++...+..... .....++++..+.|. -..|=.-.....++-|+
T Consensus 1 vii~~~~-~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~ 79 (166)
T cd04186 1 IIIVNYN-SLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVL 79 (166)
T ss_pred CEEEecC-CHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEE
Confidence 5788998 57888888988876543 3355554333332221111 111136666554432 23333334556899999
Q ss_pred EecCCcccCHHHHHHHHHHHhhCCCcee
Q 045656 634 ELDDDIMMTCDDIERGFQVWRQHPDRIV 661 (802)
Q Consensus 634 slDDDv~l~~deLeFAF~vWr~~PdRLV 661 (802)
.+|||..++++.++...+.=+++|+-.+
T Consensus 80 ~~D~D~~~~~~~l~~~~~~~~~~~~~~~ 107 (166)
T cd04186 80 LLNPDTVVEPGALLELLDAAEQDPDVGI 107 (166)
T ss_pred EECCCcEECccHHHHHHHHHHhCCCceE
Confidence 9999999999988887776666665533
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.5 Score=51.32 Aligned_cols=89 Identities=26% Similarity=0.451 Sum_probs=61.4
Q ss_pred EEECCEEEEEEEee--eccCCCceEE-EEEEeCCCCCceE--eeeeecCC----CceeeeE-EEEeCCEEEEE--eCC-C
Q 045656 194 YLQGNDLYLFYETK--NSITMQGDIG-VAKSVDKGATWQQ--LGIALDED----WHLSFPY-VFDYHGQIYMM--PES-R 260 (802)
Q Consensus 194 l~~~g~~ylF~E~~--~~~~~~G~I~-va~S~D~g~tw~~--~gvvLde~----~HLSyP~-VF~~dG~iYMi--PEs-s 260 (802)
+..++...+||+.- +....+.... +|.|.| +.++.. ..++++.| -|+..|. |+..+|++||| .++ .
T Consensus 107 V~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~ 185 (486)
T COG1621 107 VVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGED 185 (486)
T ss_pred EEeCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCC
Confidence 46788999999942 2222333333 466667 555555 44666554 4999999 67889999999 333 4
Q ss_pred CCCeeEEEEeccCCcCceeeeecc
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIM 284 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll 284 (802)
..|++.||++.+. .+|.....+.
T Consensus 186 ~~g~i~lY~S~DL-~~W~~~g~~~ 208 (486)
T COG1621 186 LKGTILLYESDDL-KNWQFTGEFG 208 (486)
T ss_pred CCceEEEEeCCCc-cCcEEEEeec
Confidence 4579999999884 7899877643
|
|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.14 Score=51.87 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=57.9
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcc-eEEEEeCCCCCCCCCCC-----C-CCCcEEEEEcCCcC-----ccccCc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVK-EIVVVWNKGEPPKLSDL-----D-SAVPVRIRVEKQNS-----LNNRFK 622 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~-kIvVVWn~~~pP~~~~~-----~-s~vPVrv~~~~~NS-----LNNRF~ 622 (802)
+.||+|-+|+ +...|.+.|+.+.+..+-+ +|+||=|+...+..... . ....|+++..+.|. -.++-.
T Consensus 2 ~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 2 RVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp -EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 4799999998 5567888898888764433 33443344333322211 1 14567877665422 111222
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
-...+++|-|+.+|||+.++++-|+...+..+...-.+||-..
T Consensus 81 ~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 81 ALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp HHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred HHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 2335679999999999999999999988888333344666333
|
|
| >KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.98 Score=52.70 Aligned_cols=147 Identities=22% Similarity=0.341 Sum_probs=89.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceE--EEEEEeCCCCCceEeeeeecCCC--cee----eeEEEEeCCEEEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDI--GVAKSVDKGATWQQLGIALDEDW--HLS----FPYVFDYHGQIYMM 256 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I--~va~S~D~g~tw~~~gvvLde~~--HLS----yP~VF~~dG~iYMi 256 (802)
..|+-|| +.++|.|+|||--=.+..-=|+| ++++|.| +.+|+.+.++|-..- -.+ =--++..+|..-|+
T Consensus 59 k~wMN~P--~~ykG~yHLFyQyNP~gavwg~ivWGHavSkD-LinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vil 135 (571)
T KOG0228|consen 59 KGWMNDP--MYYKGKYHLFYQYNPKGAVWGNIVWGHAVSKD-LINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVIL 135 (571)
T ss_pred cccccCc--cccCcEEEEEEecCCCCceeeeeEeeeecchh-hccccccCcccCCCCccccCccccceEEEccCCCeEEE
Confidence 4699999 77899999999742222223444 5778877 999999999885433 222 22356666665555
Q ss_pred eCC--CCCCeeEEEEecc---CC--cCceeee--eccC---------CCccCCEEEEE--CCEEEEEEeCCCCCCCCCCC
Q 045656 257 PES--RAKGEVRLYRAVN---FP--LEWKLEK--IIMK---------KPLVDPFMINH--DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 257 PEs--s~sg~l~LYra~~---FP--~~We~~~--~Ll~---------~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~ 316 (802)
-.. ...+.+.+|.... -| ..|.+.. +++. ...=||+.+.+ +|+|.|..... .+..
T Consensus 136 ytg~d~~~rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk-----~~q~ 210 (571)
T KOG0228|consen 136 YTGIDPNNRQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSK-----IKQR 210 (571)
T ss_pred ecccCcCceEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEee-----cCcc
Confidence 322 2235555655321 11 1365432 1111 13789999998 89999988432 1233
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeee
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYN 340 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~ 340 (802)
.+.+.|+..-+-.|++++ .|+..
T Consensus 211 g~a~~Y~S~Df~~W~k~~-~~~h~ 233 (571)
T KOG0228|consen 211 GKAIIYSSDDFKHWTKSS-VPLHS 233 (571)
T ss_pred ceEEEEeccchhhhhccc-ccccc
Confidence 555556555677899887 35443
|
|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.85 Score=48.34 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=89.7
Q ss_pred ecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCC-CCCC-CCCCCcEEEEEcCCcC-c----cccCccCCCCCccEEEE
Q 045656 562 TFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPP-KLSD-LDSAVPVRIRVEKQNS-L----NNRFKLDPLIKTRGVLE 634 (802)
Q Consensus 562 Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP-~~~~-~~s~vPVrv~~~~~NS-L----NNRF~P~~~I~T~AVLs 634 (802)
||+|....|+..|+.+.+- ..+|+||=|+.... .... ......|+++..+.|. + |.=+.--.+-.+|.|+.
T Consensus 2 tyn~~~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~ 79 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLL 79 (281)
T ss_pred ccCccHHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEE
Confidence 7886678888888887764 35666665543222 1111 2223457788776662 2 11110001126799999
Q ss_pred ecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCC-Cccccee----------ccc--Ccccceeeccceeeehhh
Q 045656 635 LDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPL-RYRGEKY----------ARR--HKGYNMILTGAAFVDSQI 701 (802)
Q Consensus 635 lDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~-~y~~~~y----------~~~--~~~YSMVLTgaAF~Hr~Y 701 (802)
+|||..++.+.|+...+.+.+.+..+.-.-||..+.... .+..... ... ...-+.+++++++++++.
T Consensus 80 lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~ 159 (281)
T TIGR01556 80 LDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREV 159 (281)
T ss_pred ECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHH
Confidence 999999999999999999988764544444554321111 1110000 000 112345677778888875
Q ss_pred hhhhccchhHHHHHHhhcc--CCCchhhHHHHHHHH
Q 045656 702 AFNRYWSEQAKAGREFVDK--FFNCEDVLLNYLYAN 735 (802)
Q Consensus 702 ~~~~Y~~~~p~~iR~~VDe--~~NCEDIaMNFLVS~ 735 (802)
+...- .-|+ ...+||.-+.+-+..
T Consensus 160 -~~~iG---------~fde~~fi~~~D~e~~~R~~~ 185 (281)
T TIGR01556 160 -YQRLG---------MMDEELFIDHVDTEWSLRAQN 185 (281)
T ss_pred -HHHhC---------CccHhhcccchHHHHHHHHHH
Confidence 32210 0122 235788888776554
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.1 Score=50.45 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=74.2
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CC----CCCCcEEEEEcCCcCccc----
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DL----DSAVPVRIRVEKQNSLNN---- 619 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~----~s~vPVrv~~~~~NSLNN---- 619 (802)
....+|||-+|+ ....|.+.++.+.+. |.--||+||=++....... .+ +....++++..+.+.-+.
T Consensus 39 ~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~ 117 (384)
T TIGR03469 39 WPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKL 117 (384)
T ss_pred CCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchH
Confidence 446999999998 567888888888553 3234888884433222111 11 111246666432211110
Q ss_pred --cCccCCCCC-----ccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccccccc
Q 045656 620 --RFKLDPLIK-----TRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVN 669 (802)
Q Consensus 620 --RF~P~~~I~-----T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~ 669 (802)
.-.-....+ .|-|+.+|+|+.++++.|+...+..++.+..+|+..+|...
T Consensus 118 ~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~ 174 (384)
T TIGR03469 118 WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC 174 (384)
T ss_pred HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC
Confidence 000112233 89999999999999999999999988888788888777643
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.4 Score=47.39 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred EEEEEeccc-ChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 557 TMLTMTFDA-RLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 557 TvvI~Ty~~-R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
||+|-||+. +...|.+.|+.+.+-.. -.+|+||=++...+.... +....|++++..+.|. -.+|-.-...-+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 689999974 23578888888765332 357777655543332211 2233468887766653 233333334567
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eee
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVG 662 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVG 662 (802)
+|.|+.+|+|..++++.|+...+.++++|+- +|+
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~ 115 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVG 115 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEc
Confidence 8999999999999999999999999888754 554
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.2 Score=51.35 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=54.7
Q ss_pred eeeCeeeEEE--CCEEEEEEEeeecc----------------------C---------CCceEEEEEEeCCC-CCceEee
Q 045656 187 FVADPFFYLQ--GNDLYLFYETKNSI----------------------T---------MQGDIGVAKSVDKG-ATWQQLG 232 (802)
Q Consensus 187 F~ADPFll~~--~g~~ylF~E~~~~~----------------------~---------~~G~I~va~S~D~g-~tw~~~g 232 (802)
-|-|||.++. +|+.||+||.--.. . ..|.|+++++.++- ..|+...
T Consensus 209 afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~ 288 (428)
T PF02435_consen 209 AFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLP 288 (428)
T ss_dssp --EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEE
T ss_pred cccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeC
Confidence 3689999988 99999999963221 0 36999999988754 5699888
Q ss_pred eeecC---CCceeeeEEEEeCCEEEEEeCC
Q 045656 233 IALDE---DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 233 vvLde---~~HLSyP~VF~~dG~iYMiPEs 259 (802)
++|+- .-.+==|.|+..+|++||.--+
T Consensus 289 PL~~a~~v~de~ERP~iv~~~gkyYLFt~s 318 (428)
T PF02435_consen 289 PLLSANGVNDELERPHIVFMNGKYYLFTIS 318 (428)
T ss_dssp EEEEETTTBS-EEEEEEEEETTEEEEEEEE
T ss_pred cceecccccccccCCcEEEECCEEEEEEEe
Confidence 77654 3457779999999999998543
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A .... |
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.77 Score=46.46 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred EEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC----CCC---CCCcEEEEEcCCcC-----cc-ccCc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS----DLD---SAVPVRIRVEKQNS-----LN-NRFK 622 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~----~~~---s~vPVrv~~~~~NS-----LN-NRF~ 622 (802)
|+|-+|+ +...|.+.|+.+.+- +.--||+|| ++....... .+. ...+++++....+. +. .|=.
T Consensus 1 ViIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVv-Dd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~ 78 (219)
T cd06913 1 IILPVHN-GEQWLDECLESVLQQDFEGTLELSVF-NDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEE-eCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHH
Confidence 5889998 567888888887543 322488888 433332211 111 12356655433221 11 1111
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecc
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~ 664 (802)
=....+.|-|+.+|+|..+.++.|+..+..+.++|+.+||..
T Consensus 79 g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 79 AIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 234557899999999999999999988899989999888853
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. |
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.58 Score=48.32 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCCCCCCCcEEEEEcCCcCc-cccCccCCCCCccEEE
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSL-NNRFKLDPLIKTRGVL 633 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~~~s~vPVrv~~~~~NSL-NNRF~P~~~I~T~AVL 633 (802)
++|++|.||+ ....|.+.|+++... ..||+||=|....... +......++|+..+.... ..|=.-....++|-|+
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~--~~eiivvD~gStD~t~-~i~~~~~~~v~~~~~~g~~~~~n~~~~~a~~d~vl 76 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWA--VDEIIVVDSGSTDRTV-EIAKEYGAKVYQRWWDGFGAQRNFALELATNDWVL 76 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcc--cCEEEEEeCCCCccHH-HHHHHcCCEEEECCCCChHHHHHHHHHhCCCCEEE
Confidence 4799999998 567788888888654 3589988775432211 111112345554422111 1122223467889999
Q ss_pred EecCCcccCHHHHHHHHHHHhhCCC
Q 045656 634 ELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 634 slDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
.+|.|..++++-++...+.-++.|.
T Consensus 77 ~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 77 SLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred EEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 9999999999999988877777776
|
UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. |
| >COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.91 E-value=7.5 Score=43.13 Aligned_cols=165 Identities=16% Similarity=0.253 Sum_probs=107.6
Q ss_pred eEEEEeCCEEEEEe-------CC-CCCCeeEEEEeccCCcCceeee--eccC-C------CccCCEEEEECCEEEEEEeC
Q 045656 244 PYVFDYHGQIYMMP-------ES-RAKGEVRLYRAVNFPLEWKLEK--IIMK-K------PLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 244 P~VF~~dG~iYMiP-------Es-s~sg~l~LYra~~FP~~We~~~--~Ll~-~------~~vDatI~~~dG~wwLF~S~ 306 (802)
|-|...++++.|++ |. +.-+++.+-+..+--.+|+.+. ++.. + .++||=+++.||+|+|.||.
T Consensus 34 pav~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I~~~y~mtYTa 113 (314)
T COG2152 34 PAVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTKIGGRYYMTYTA 113 (314)
T ss_pred ceeEEECCEEEEEEEEeccccccCccceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEEECCEEEEEEEe
Confidence 44555666777764 22 3457788877776655577754 3443 2 49999999999999999998
Q ss_pred CCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccE--EECCeEEEEcccCCCCCC--ceEEEEEecc
Q 045656 307 HSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPF--VYDGNLYRVGQDCAESYG--RRVRTFKVEI 382 (802)
Q Consensus 307 ~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF--~~dGkLyRp~QdC~~~YG--~~L~l~~It~ 382 (802)
....| ....++.+.+.+. |++-. ++..-+ .| .+.+| +.+||+.+..+--...|| ..+++.-..+
T Consensus 114 ~s~~g----~~~~la~t~~f~n-~~rig--~i~~pd----n~-~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~S~d 181 (314)
T COG2152 114 YSDKG----PRLALAVTKDFLN-WERIG--AIFPPD----NK-DAALFPKKINGKYALLHRPVLGEYGMKGNIWIAFSPD 181 (314)
T ss_pred cCCCC----cccchhhhhhhhh-hhhcc--cccCCC----CC-CceEeeEEecCcEEEEEeecccccCccCceEEEEcCC
Confidence 53222 2455666666655 87643 333211 12 13333 569999999998888888 7889988888
Q ss_pred CCccceEEec----cccCCCC----CCccccccccCCCCCeEEEEeCccc
Q 045656 383 LTKNEYKELE----GRNAWNG----ARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 383 Lt~~~y~E~~----~~~~w~~----~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
|-.|.+..+. ....|.. -+.+.+... .+|+..+-|-+.
T Consensus 182 l~~w~~~~~~l~~~~~~~~d~~KIG~g~~Pikt~----egwLvlyHgv~~ 227 (314)
T COG2152 182 LEHWGIHRKLLGPRMGGWWDELKIGWGTPPIKTE----EGWLVLYHGVDE 227 (314)
T ss_pred ccCCCccceeeccccCCcchhhhccCCCCCcCcc----cceEEEEeeccC
Confidence 8888777666 3334443 234444442 368888887664
|
|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.1 Score=46.35 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=66.8
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC----CCC--CCCcEEEEEcCCcC--ccccCcc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS----DLD--SAVPVRIRVEKQNS--LNNRFKL 623 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~----~~~--s~vPVrv~~~~~NS--LNNRF~P 623 (802)
.+||+|-+|+ ....|...|+.+.+..+- -||+||=++. .+... .+. ....|+++....|. -..+=.-
T Consensus 2 ~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 2 VYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred eEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHH
Confidence 5899999998 456788888888665332 3677774432 22111 111 12334433322220 0011112
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccc
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPR 666 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R 666 (802)
....+.|-|+.+|+|..++++.|+...+.+++....++...++
T Consensus 80 ~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 80 LAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred HHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 2356789999999999999999999999998764555444344
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.65 Score=47.43 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=61.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC---CC-----CCCCcEEEEEcCCc-C--cccc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS---DL-----DSAVPVRIRVEKQN-S--LNNR 620 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~---~~-----~s~vPVrv~~~~~N-S--LNNR 620 (802)
.+||||-+|+ ....|.+.|+.+.+..+. -+|+|| ++....... .+ ...++|+++....| . -.++
T Consensus 2 ~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVv-D~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 2 MVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVL-DDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred ceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEE-ECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 4899999998 456788888888654332 367776 332211111 11 12467776654332 1 1111
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
=.=....+.|-|+.+|.|..++++-|+-... ..++|+
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~-~~~~~~ 116 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDFLQKTPP-YFADPK 116 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHHHHHhhh-hhcCCC
Confidence 1122456899999999999999999988433 334554
|
Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we |
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.3 Score=44.26 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=64.0
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC---cceEEEEeCCCCCCCCCCC-----CCCCcEEEEEcCCcCccccCc------c
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS---VKEIVVVWNKGEPPKLSDL-----DSAVPVRIRVEKQNSLNNRFK------L 623 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~---v~kIvVVWn~~~pP~~~~~-----~s~vPVrv~~~~~NSLNNRF~------P 623 (802)
|+|-||+ +...|.+.|+.+.+-.. .-||+||-++......... .....|+++..+. -.|+.+ -
T Consensus 1 viip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARN-EAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR--VSISGKKNALTTA 77 (229)
T ss_pred CEEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC--cccchhHHHHHHH
Confidence 5789998 56778888888754322 2589999876533222111 1234455554432 111111 1
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecc
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~ 664 (802)
.....+|-|+.+|+|..+.++-|+...+.-++++.-+|...
T Consensus 78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 23467899999999999999999988876565554444433
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.7 Score=44.78 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=67.4
Q ss_pred EEEEecccChhhHHHHHHHhcCCC---CcceEEEEeCCCCCCCCCC---C-CCCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS---SVKEIVVVWNKGEPPKLSD---L-DSAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p---~v~kIvVVWn~~~pP~~~~---~-~s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
|+|.+|+ +...|++.++.+.+.. ...||+||=|+........ + .....++++..+.|. -.++=.-....+
T Consensus 1 iii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~ 79 (185)
T cd04179 1 VVIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR 79 (185)
T ss_pred CeecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc
Confidence 5788997 5567777788776653 3678888866644322211 1 111234566555552 222223335567
Q ss_pred ccEEEEecCCcccCHHHHHHHHHH-HhhCCCceeecc
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQV-WRQHPDRIVGFY 664 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~v-Wr~~PdRLVGF~ 664 (802)
+|.|+.+|+|..++++.|+...+. .+..++=++|..
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 799999999999999999999888 444555566653
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=86.97 E-value=4.5 Score=39.97 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=67.7
Q ss_pred EEEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCC---CCC--CCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLS---DLD--SAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~---~~~--s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
+|+|-||+ +...|.+.|+.+.+.. .--||+||=++....... .+. ....+++...+.|. -.++-.-....+
T Consensus 1 sIvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~ 79 (214)
T cd04196 1 AVLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD 79 (214)
T ss_pred CEEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC
Confidence 58999998 5567888787765432 134888883333222111 111 12456666665552 222222245678
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccc
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPR 666 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R 666 (802)
+|-|+.+|+|..+.++.|+-..+...+.|.- +++...+
T Consensus 80 g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 118 (214)
T cd04196 80 GDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLE 118 (214)
T ss_pred CCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcE
Confidence 9999999999999999999888876666654 4444333
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.1 Score=44.82 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=64.4
Q ss_pred EEEEecccChhhHHHHHHHhcCCC--CcceEEEEeCCCCCCCCCC----C-CCCCcEEEEEcCCc-CccccC-ccCCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS--SVKEIVVVWNKGEPPKLSD----L-DSAVPVRIRVEKQN-SLNNRF-KLDPLIK 628 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p--~v~kIvVVWn~~~pP~~~~----~-~s~vPVrv~~~~~N-SLNNRF-~P~~~I~ 628 (802)
|||.+|+ +...|.++|+.+.+.. .--||+|| ++..+..... + .....++++..+.| ...+.+ .=....+
T Consensus 1 ViIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiV-Dd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 1 IIIPTYN-ERENIPELIERLDAALKGIDYEIIVV-DDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred CeEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEE-eCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcC
Confidence 5889998 5667888787775533 34678888 4443322211 2 11223566655554 222211 2234577
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhC-CCceee
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQH-PDRIVG 662 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~-PdRLVG 662 (802)
+|.|+.+|+|..++++.|+...+.+.+. ++=++|
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8999999999999999999999986554 444444
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.5 Score=42.88 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred EEEEecccChhhHHHHHHHhcC----CCCcceEEEEeCCCCCCCCC---CCCC-CCcEEEEEcCCcC-c-cccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSR----CSSVKEIVVVWNKGEPPKLS---DLDS-AVPVRIRVEKQNS-L-NNRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~----~p~v~kIvVVWn~~~pP~~~---~~~s-~vPVrv~~~~~NS-L-NNRF~P~~~I 627 (802)
|+|-||+ +...|..+++.+.+ ...--||+||=++....... .+.. ...|+++...+|. . +.+-.-....
T Consensus 1 viIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a 79 (181)
T cd04187 1 IVVPVYN-EEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHA 79 (181)
T ss_pred CEEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhc
Confidence 5789998 44555555554432 22334888884433221111 1111 2236776665552 1 1111122356
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHhhCCCceeec
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF 663 (802)
+.|.|+.+|+|..++.+.|+...+...+..+-+.|.
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~ 115 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGV 115 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEE
Confidence 779999999999999999999999854444444443
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=84.09 E-value=3 Score=46.68 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCC---CCCcEEEEEcCCc-----Ccccc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLD---SAVPVRIRVEKQN-----SLNNR 620 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~---s~vPVrv~~~~~N-----SLNNR 620 (802)
....||+|-+|+ ....|...|+.+.+-.+= -||+|+=++...+... .+. ..+.|+++..+++ +.+|-
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l 118 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNL 118 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHH
Confidence 456999999997 456788888877554322 5777762222222111 111 1345777655432 12221
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC-ceeecccc
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD-RIVGFYPR 666 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd-RLVGF~~R 666 (802)
..-.+.-+.|-|+.+|+|+.++++-|+......+ +|+ -+|+-.++
T Consensus 119 ~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~ 164 (373)
T TIGR03472 119 INMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYR 164 (373)
T ss_pred HHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEecccc
Confidence 1123567899999999999999999998877664 554 36644343
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=84.07 E-value=3.2 Score=45.95 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=66.4
Q ss_pred CceEEEEEecccChhhHHHHHHHh----cCCCCcceEEEEeCCCCCCCCCC----C-C-CCCcEEEEEcCCcCc--cccC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHY----SRCSSVKEIVVVWNKGEPPKLSD----L-D-SAVPVRIRVEKQNSL--NNRF 621 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hy----a~~p~v~kIvVVWn~~~pP~~~~----~-~-s~vPVrv~~~~~NSL--NNRF 621 (802)
.+++|||-+|+ ....|..+++.+ .+.+.--||+|| ++.+.....+ . . ....|+++..++|.= ..+-
T Consensus 6 ~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 6 KKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLI-DDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHH
Confidence 46999999997 344555555443 333333588888 4433322111 1 1 134455554444421 2222
Q ss_pred ccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeec
Q 045656 622 KLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF 663 (802)
.=...-+.|.|+.+|+|...++++|+...+.|++..| +||-
T Consensus 84 ~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~D-vV~~ 124 (325)
T PRK10714 84 AGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYD-VVGT 124 (325)
T ss_pred HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCC-EEEE
Confidence 2223457899999999999999999999999987766 6654
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=83.94 E-value=93 Score=36.29 Aligned_cols=179 Identities=13% Similarity=0.178 Sum_probs=95.6
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeC----CCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC-CCCCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD----KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE-SRAKG 263 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D----~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE-ss~sg 263 (802)
..||.+ .++++..|...-.. .--.|++..+.- ...+|......-+.|..-+.--....++.+|++=- .....
T Consensus 113 g~~f~~-~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~ 189 (470)
T PLN02193 113 GVKFVL-QGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ 189 (470)
T ss_pred CCEEEE-cCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC
Confidence 467887 68999998854211 233566665431 12578765432122322233345566889999821 11111
Q ss_pred ee--EEEEeccCCcCceeeeec--cCC-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 264 EV--RLYRAVNFPLEWKLEKII--MKK-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 264 ~l--~LYra~~FP~~We~~~~L--l~~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
.+ .+|+...--.+|+..+.. +.. .....++...+++-|+|.-.. +......+.+| |.....|+.-+..+
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~---~~~~~ndv~~y--D~~t~~W~~l~~~~- 263 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD---ASRQYNGFYSF--DTTTNEWKLLTPVE- 263 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC---CCCCCccEEEE--ECCCCEEEEcCcCC-
Confidence 11 255543333579753321 111 235778888999999998421 11112244443 54467798644221
Q ss_pred eeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 339 YNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 339 ~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.. ..+|.+......++++|.+.-.....+-..+..+.+
T Consensus 264 -~~---P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 264 -EG---PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred -CC---CCCccceEEEEECCEEEEECCCCCCCCcceEEEEEC
Confidence 11 136777777788999999886432223233444433
|
|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.5 Score=39.57 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=60.9
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCCC----CCCCcEEEEEcCCc--CccccCccCCCCCcc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSDL----DSAVPVRIRVEKQN--SLNNRFKLDPLIKTR 630 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~~----~s~vPVrv~~~~~N--SLNNRF~P~~~I~T~ 630 (802)
++|.+|. +...|...++++.+... ..+|+|+=|.......... ....++..+....+ .-.++-.-.....+|
T Consensus 1 iii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 79 (156)
T cd00761 1 VIIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE 79 (156)
T ss_pred CEEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence 4788887 56778888888877753 4567766555443322211 11123333333332 222233333445899
Q ss_pred EEEEecCCcccCHHHHHHHHHHHhhCCCc
Q 045656 631 GVLELDDDIMMTCDDIERGFQVWRQHPDR 659 (802)
Q Consensus 631 AVLslDDDv~l~~deLeFAF~vWr~~PdR 659 (802)
-|+.+|+|..+..+.++........+++.
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAELLADPEA 108 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHHhcCCCc
Confidence 99999999999999888764555555543
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=81.88 E-value=4.2 Score=40.61 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=59.8
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CC---CCCCcEEEEEcCCc-Ccc----ccC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DL---DSAVPVRIRVEKQN-SLN----NRF 621 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~---~s~vPVrv~~~~~N-SLN----NRF 621 (802)
.+||||-+|+ ....|.+.|+.+.+- +. -||+||=++....... .+ .....++++...+| ..+ ++=
T Consensus 2 ~vsviip~~n-~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 2 GVSILKPLCG-VDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CeEEEEecCC-CCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHH
Confidence 3799999997 445677778877542 33 4777765554322111 11 11234666655544 221 111
Q ss_pred ccCCCCCccEEEEecCCcccCHHHHHHHHHHH
Q 045656 622 KLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~l~~deLeFAF~vW 653 (802)
.-....++|.|+.+|+|..++++-|+...+.-
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 12344678999999999999999998777653
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
Probab=81.18 E-value=3.6 Score=39.85 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=55.3
Q ss_pred EEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCCC----CC--CCCcEEEEEcCCcCcc---ccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLSD----LD--SAVPVRIRVEKQNSLN---NRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~~----~~--s~vPVrv~~~~~NSLN---NRF~P~~~I 627 (802)
|||-+|+ +...|++.|+.+.+-... .||+| .++..+..... +. ...+++.+....+... +|=.-.+..
T Consensus 1 ivip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a 78 (182)
T cd06420 1 LIITTYN-RPEALELVLKSVLNQSILPFEVII-ADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA 78 (182)
T ss_pred CEEeecC-ChHHHHHHHHHHHhccCCCCEEEE-EeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh
Confidence 5789998 567789889988664333 36555 46554332211 11 1233433333322110 111112346
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHH
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVW 653 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vW 653 (802)
+.|-|+.+|+|..++.+-|+...+.-
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 78999999999999999888776654
|
Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=1.1e+02 Score=35.87 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=90.7
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEE---eCCCC-CCeeEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMM---PESRA-KGEVRLY 268 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMi---PEss~-sg~l~LY 268 (802)
....++++|++--.-. ......+.+. +....+|+.... + +..-+..-+...+|++|++ .+... ...+..|
T Consensus 338 ~~~~~~~lyv~GG~~~-~~~~~~v~~y--d~~~~~W~~~~~-l--p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~y 411 (534)
T PHA03098 338 VTVFNNRIYVIGGIYN-SISLNTVESW--KPGESKWREEPP-L--IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECF 411 (534)
T ss_pred EEEECCEEEEEeCCCC-CEecceEEEE--cCCCCceeeCCC-c--CcCCccceEEEECCEEEEECCcCCCCcccceEEEE
Confidence 4567899999765321 1111223222 224568986543 2 2223344456678999998 22221 2445455
Q ss_pred EeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 269 ra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
-.. -.+|+....+ ..+....+...++|+.|+++-............ ++.=|.-.+.|+.-+.-| ..|
T Consensus 412 d~~--t~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--v~~yd~~~~~W~~~~~~~--------~~r 478 (534)
T PHA03098 412 SLN--TNKWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI--VESYNPVTNKWTELSSLN--------FPR 478 (534)
T ss_pred eCC--CCeeeecCCC-CccccCceEEEECCEEEEECCccCCCCCcccce--EEEecCCCCceeeCCCCC--------ccc
Confidence 432 2579764432 233445677788999999873210000000112 333354577898765333 135
Q ss_pred cCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 349 ~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.+......+|++|.+...+...+-..+..|..
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 55556677999999987765544444555543
|
|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.9 Score=46.97 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=65.9
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCcc---eEEEEeCCCCCCCCCC----C-CCCCcEEEEEcCCc-----Cccc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVK---EIVVVWNKGEPPKLSD----L-DSAVPVRIRVEKQN-----SLNN 619 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~---kIvVVWn~~~pP~~~~----~-~s~vPVrv~~~~~N-----SLNN 619 (802)
...+||+|-+|+ ....|...|+.+.+..+-. +|+|| ++.......+ . .....++++..++| .+|.
T Consensus 48 ~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVV-Dd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~ 125 (439)
T TIGR03111 48 LPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILA-NNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNA 125 (439)
T ss_pred CCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEE-ECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHH
Confidence 457999999998 4577888888886654322 68888 5444332211 1 11123444433332 1222
Q ss_pred cCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc
Q 045656 620 RFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR 659 (802)
Q Consensus 620 RF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR 659 (802)
=+ ...+.|-|+.+|+|..+.++.|+...+...++|+-
T Consensus 126 gl---~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v 162 (439)
T TIGR03111 126 AI---YNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDI 162 (439)
T ss_pred HH---HHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCe
Confidence 22 34678899999999999999999888888778763
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.9 Score=41.64 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=62.5
Q ss_pred EEEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCC-C---CC--CCCCcEEEEEcCCcC-c--cccCccCCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKL-S---DL--DSAVPVRIRVEKQNS-L--NNRFKLDPL 626 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~-~---~~--~s~vPVrv~~~~~NS-L--NNRF~P~~~ 626 (802)
+|||-+|+.....|.+.++++.+..+ --||+||=|+...+.. . .+ .....++++....|. . .++-.-...
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 58999998544678888888876543 2488888544332221 0 11 112345555443321 1 111111122
Q ss_pred C--CccEEEEecCCcccCHHHHHHHHHHHhhCCC-ceee
Q 045656 627 I--KTRGVLELDDDIMMTCDDIERGFQVWRQHPD-RIVG 662 (802)
Q Consensus 627 I--~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd-RLVG 662 (802)
. .+|.|+.+|+|..++++.|+......+ +|+ -+|+
T Consensus 81 a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~ 118 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQ 118 (236)
T ss_pred cCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEe
Confidence 2 279999999999999999998887764 443 3454
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=80.47 E-value=3 Score=40.42 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred EEEEEecccChhhHHHHHHHhcC--CCCcceEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcCc-cccCccCCCCCc
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSR--CSSVKEIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNSL-NNRFKLDPLIKT 629 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~--~p~v~kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NSL-NNRF~P~~~I~T 629 (802)
||||-+|+ +...|.+.++.+.+ .+. -||+|| ++...+...+ +... .+.++..+.... ..|=.-....+.
T Consensus 1 sivi~~~n-~~~~l~~~l~sl~~q~~~~-~evivv-Dd~s~d~~~~~~~~~~~~-~~~~~~~~~~g~~~a~n~~~~~a~~ 76 (202)
T cd06433 1 SIITPTYN-QAETLEETIDSVLSQTYPN-IEYIVI-DGGSTDGTVDIIKKYEDK-ITYWISEPDKGIYDAMNKGIALATG 76 (202)
T ss_pred CEEEeccc-hHHHHHHHHHHHHhCCCCC-ceEEEE-eCCCCccHHHHHHHhHhh-cEEEEecCCcCHHHHHHHHHHHcCC
Confidence 68999998 55778777877743 444 478888 4433332211 1111 233333222211 111111235678
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
|-|+.+|||..+..+.++.......+.|+
T Consensus 77 ~~v~~ld~D~~~~~~~~~~~~~~~~~~~~ 105 (202)
T cd06433 77 DIIGFLNSDDTLLPGALLAVVAAFAEHPE 105 (202)
T ss_pred CEEEEeCCCcccCchHHHHHHHHHHhCCC
Confidence 99999999999999999988878877764
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 802 | ||||
| 1omx_A | 293 | Crystal Structure Of Mouse Alpha-1,4-N- Acetylhexos | 2e-23 |
| >pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N- Acetylhexosaminyltransferase (Extl2) Length = 293 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 802 | |||
| 1omz_A | 293 | Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro | 100.0 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 99.64 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 99.63 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 99.6 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 99.6 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 99.58 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 99.56 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 99.53 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 99.53 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 99.53 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 99.52 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 99.51 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 99.5 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 99.49 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 99.49 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 99.47 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 99.46 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 99.45 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 99.42 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 99.39 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 99.39 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 99.36 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 99.36 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 99.36 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 99.34 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 99.33 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 99.33 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 99.31 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 99.28 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 99.26 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 99.24 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 99.12 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 99.11 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 99.08 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 99.05 | |
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 99.03 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 98.93 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 98.92 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 98.89 | |
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 98.88 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 98.84 | |
| 2yfr_A | 571 | Levansucrase, inulosucrase; fructosyltransferase, | 98.76 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 98.71 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 98.58 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 98.51 | |
| 3vss_A | 496 | Beta-fructofuranosidase; glycoside hydrolase famil | 98.5 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 98.5 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 98.43 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 98.4 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 98.36 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 98.32 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 98.29 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 98.25 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 98.23 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 98.22 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 98.21 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 98.14 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 98.1 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 97.95 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 97.84 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 97.69 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 97.68 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 97.65 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 97.5 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 97.49 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 97.44 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 97.42 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 97.15 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 97.11 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 97.02 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 96.97 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 96.89 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 96.72 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 96.66 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 95.99 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 95.98 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 95.79 | |
| 2yfr_A | 571 | Levansucrase, inulosucrase; fructosyltransferase, | 95.78 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 95.02 | |
| 1ms9_A | 648 | Trans-sialidase; trans-glycosylation, protein-acrb | 94.53 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 94.37 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 94.2 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 94.19 | |
| 4fj6_A | 523 | Glycoside hydrolase family 33, candidate sialidas; | 94.17 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 94.09 | |
| 3sil_A | 379 | Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 | 93.88 | |
| 3vss_A | 496 | Beta-fructofuranosidase; glycoside hydrolase famil | 93.82 | |
| 2sli_A | 679 | Intramolecular trans-sialidase; hydrolase, neurami | 93.2 | |
| 2xzi_A | 386 | KDNAse, extracellular sialidase/neuraminidase, put | 93.08 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 92.61 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 92.27 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 92.25 | |
| 2jkb_A | 686 | Sialidase B; intramolecular trans-sialidase, lyase | 91.94 | |
| 2bf6_A | 449 | Sialidase, EXO-alpha-sialidase; sialic acid, hydro | 91.85 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 91.57 | |
| 2xzi_A | 386 | KDNAse, extracellular sialidase/neuraminidase, put | 91.03 | |
| 1so7_A | 382 | Sialidase 2; neuraminidase, ganglioside, sugar-ind | 90.95 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 90.94 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 90.87 | |
| 3sil_A | 379 | Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 | 90.47 | |
| 4fj6_A | 523 | Glycoside hydrolase family 33, candidate sialidas; | 90.1 | |
| 1so7_A | 382 | Sialidase 2; neuraminidase, ganglioside, sugar-ind | 89.54 | |
| 2jkb_A | 686 | Sialidase B; intramolecular trans-sialidase, lyase | 89.43 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 89.27 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 88.74 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.72 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 88.09 | |
| 2bf6_A | 449 | Sialidase, EXO-alpha-sialidase; sialic acid, hydro | 87.06 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 86.95 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 86.8 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 86.79 | |
| 2w20_A | 471 | Sialidase A; secreted, cell WALL, hydrolase, glyco | 86.33 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 84.67 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 83.82 | |
| 2sli_A | 679 | Intramolecular trans-sialidase; hydrolase, neurami | 83.02 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 82.63 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 82.12 | |
| 4hbs_A | 416 | Putative hydrolase; 5-bladed beta-propeller, struc | 81.56 | |
| 2w20_A | 471 | Sialidase A; secreted, cell WALL, hydrolase, glyco | 80.36 | |
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 80.29 |
| >1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-73 Score=599.48 Aligned_cols=244 Identities=25% Similarity=0.476 Sum_probs=203.0
Q ss_pred CCCCceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC-CC----CCCCcEEEEEcCCcCccccCccCC
Q 045656 551 GHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS-DL----DSAVPVRIRVEKQNSLNNRFKLDP 625 (802)
Q Consensus 551 g~~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~-~~----~s~vPVrv~~~~~NSLNNRF~P~~ 625 (802)
.+.+||||||+||+ |...|+++|+||++||+|+||+||||++++|+|. .| ++.|||+|+++++|||||||+|++
T Consensus 25 ~~~~~FTvvi~ty~-R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p~~ 103 (293)
T 1omz_A 25 SALDSFTLIMQTYN-RTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFP 103 (293)
T ss_dssp -CTTCEEEEEEESS-CHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCT
T ss_pred CCCCceEEEEEeec-ccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccCCCc
Confidence 34689999999998 7889999999999999999999999999766665 23 346999999999999999999999
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCC---CCccccee----cccCcccceeeccceeee
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSP---LRYRGEKY----ARRHKGYNMILTGAAFVD 698 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~---~~y~~~~y----~~~~~~YSMVLTgaAF~H 698 (802)
+|+|||||++|||+.++|+||||||+|||+||||||||+||+|.+++ +.|..+.+ .+++++||||||||||+|
T Consensus 104 ~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~~R~H~~~~~~~w~Y~~~~~~~p~~~~~~~YSmVLTgaAF~H 183 (293)
T 1omz_A 104 EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFN 183 (293)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTSCCCSSSSSCCBSEECTTEEEEE
T ss_pred cCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCchhhhccCCCCccccccccccccccCCCCeEEEEECchHHhc
Confidence 99999999999999999999999999999999999999999997653 22322222 146889999999999999
Q ss_pred hhhhhhhccchhHHHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCC--cccccccCCCCchhhHHHHHH
Q 045656 699 SQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSK--FSGVAISRNTQVHYHKRSECL 776 (802)
Q Consensus 699 r~Y~~~~Y~~~~p~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~--~sg~~iS~~~~~H~~~Rs~Cl 776 (802)
|+| +++|+ .+|+++|++||+++||||||||||||++||+||+.+++|.......+ .+..++|. +.+|+++|++||
T Consensus 184 r~Y-l~lyt-~~p~~ir~~VDe~~NCEDIaMNFlVA~~T~~pP~i~vk~~~~~~~~~~~~~~~gis~-~~~H~~~R~~Cl 260 (293)
T 1omz_A 184 SKY-LELFQ-KQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWH-RAEHFLQRSYCI 260 (293)
T ss_dssp THH-HHHHH-TSCHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECCSSEEECC-------------CHHHHHHHHHH
T ss_pred cHH-HHHHH-HhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcceeccccccccccccccccCCCC-CcchhHHHHHHH
Confidence 998 45676 58999999999999999999999999999999966666532211222 12346675 579999999999
Q ss_pred HHHHHHhCCCCceeeeecccCC
Q 045656 777 RKFAEMYGSFAGRKWEFGGRKD 798 (802)
Q Consensus 777 n~F~~~fG~mPL~~~~f~~~~~ 798 (802)
|+|+++||+|||+.+++|..+=
T Consensus 261 n~f~~~fG~mPL~~s~~r~d~~ 282 (293)
T 1omz_A 261 NKLVNIYDGMPLKYSNIMISQF 282 (293)
T ss_dssp HHHHHHHTSCCCCCBCEEEEET
T ss_pred HHHHHHHCCCCCeeeEEeecCC
Confidence 9999999999999999986543
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=160.73 Aligned_cols=195 Identities=21% Similarity=0.282 Sum_probs=142.5
Q ss_pred ceeeCee-eEEECCEEEEEEEeeeccC---------------CCceEEEEEEeCCCCCceEeeeeecCC----C---cee
Q 045656 186 NFVADPF-FYLQGNDLYLFYETKNSIT---------------MQGDIGVAKSVDKGATWQQLGIALDED----W---HLS 242 (802)
Q Consensus 186 ~F~ADPF-ll~~~g~~ylF~E~~~~~~---------------~~G~I~va~S~D~g~tw~~~gvvLde~----~---HLS 242 (802)
.+.+||. ++..+|+|||||+..+... ..-+|++++|.| +.+|+..+.+|..+ | .++
T Consensus 93 v~~~DP~~vi~~dG~Yylfyt~~~~~~~G~~~~~~~~~~~p~~~~~i~~A~S~D-lv~W~~~g~~l~~~~~~~wd~~gv~ 171 (408)
T 3p2n_A 93 VVRRDPSAIIKENGKYYVWYSKSTGPTQGFGGDIEKDKVFPWDRCDIWYATSED-GWTWKEEGPAVTRGEKGAYDDRSVF 171 (408)
T ss_dssp EEEECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESS-SSEEEEEEEEECCCSTTSTTSSEEE
T ss_pred cEeCCCCEEEEECCEEEEEEEeCCCcccccccccccccccccccceEEEEEcCC-CCeeeEeCceeCCCCCCCcccCceE
Confidence 4789999 7799999999999765211 135799999988 89999999999642 2 589
Q ss_pred eeEEEEeCCEEEEEeCC------C-CCCeeEEEEeccCCcCceeee-eccCC-------------------------Ccc
Q 045656 243 FPYVFDYHGQIYMMPES------R-AKGEVRLYRAVNFPLEWKLEK-IIMKK-------------------------PLV 289 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEs------s-~sg~l~LYra~~FP~~We~~~-~Ll~~-------------------------~~v 289 (802)
.|.|++++|++||+-.. . ..+.+.+..+.+--..|+... .+++. .++
T Consensus 172 aPsVi~~dGkYyL~Yt~~~~~~~~~~~~~i~va~A~S~DG~W~~~~~pli~~~~~~~~~~e~d~~~~~~~~~~wd~~~v~ 251 (408)
T 3p2n_A 172 TVEIMKWEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPWTKSEEPILSPADNGVWKGEEQDRFAVIKKGDFDSHKVH 251 (408)
T ss_dssp EEEEEEETTEEEEEEEEECSSCCTTCCCEEEEEEESSTTCCCEECSSCSBCCCSCCEECSSSCCTTCEEECCSTTSSEEE
T ss_pred eeEEEEECCEEEEEEEeecCCCCCcCCCceEEEEEECCCCCEEECCcceeCCCCCceEEEecCCcccccccceecCCCeE
Confidence 99999999999997432 1 134566666543223498753 23321 278
Q ss_pred CCEEEEECCEEEEEEeCCCCCC-----CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEE
Q 045656 290 DPFMINHDGQYWLFGSDHSGFG-----TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRV 363 (802)
Q Consensus 290 DatI~~~dG~wwLF~S~~~~~g-----~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp 363 (802)
||++++++|+|||||+... .+ ......+++++|++++|||++++.|||+... +...+|.+ ||+++++
T Consensus 252 ~P~v~~~~G~yyl~Ys~~~-~g~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPVl~~~------~dp~Vw~~~dG~y~mi 324 (408)
T 3p2n_A 252 DPCIIPYKGKFYLYYKGEQ-MGEAITFGGRQIRHGVAIADNPKGPYVKSPYNPISNSG------HEICVWPYNGGIASLI 324 (408)
T ss_dssp EEEEEEETTEEEEEEEEEC-TTCCEETTEECCEEEEEEESSTTCCCEECTTCCSCSSC------SSCCEEEETTEEEEEE
T ss_pred cceEEEECCEEEEEEEccc-CccccccCCCccEEEEEEECCCCCCcEECCCCCcccCC------CCCeeEecCCCEEEEE
Confidence 9999999999999999752 11 0123578999999999999999999998642 23567765 6777888
Q ss_pred cccCCCCCCceEEEEEeccCCccceEEec
Q 045656 364 GQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 364 ~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.|+.. |+ ..+++.+++..|++.-+.
T Consensus 325 ~~~g~---gh-~~i~~S~Dg~~W~~~~~i 349 (408)
T 3p2n_A 325 TTDGP---EK-NTIQWAPDGINFEIKSVI 349 (408)
T ss_dssp CSSST---TC-SEEEEESSSSCCEEEEEC
T ss_pred EECCC---Cc-EEEEECCCCCEEEEEeec
Confidence 77633 33 335788999999887655
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=157.55 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=142.1
Q ss_pred ceeeCe-eeEEECCEEEEEEEeeeccC---------------CCceEEEEEEeCCCCCceEeeeeecCC-------Ccee
Q 045656 186 NFVADP-FFYLQGNDLYLFYETKNSIT---------------MQGDIGVAKSVDKGATWQQLGIALDED-------WHLS 242 (802)
Q Consensus 186 ~F~ADP-Fll~~~g~~ylF~E~~~~~~---------------~~G~I~va~S~D~g~tw~~~gvvLde~-------~HLS 242 (802)
.+++|| +++..+|+|||||+...... ....|++++|.| +.+|+..+.+|..+ ..++
T Consensus 48 ~~~~DP~~v~~~dG~Yymfyt~~~~~~~G~~~~~~~~~~~~w~~~~i~~a~S~D-Lv~W~~~g~~l~~~~~~~~d~~gvw 126 (374)
T 3r4z_A 48 VIRRDPSAVLKVDDEYHVWYTKGEGETVGFGSDNPEDKVFPWDKTEVWHATSKD-KITWKEIGPAIQRGAAGAYDDRAVF 126 (374)
T ss_dssp EEEECCCCBEEETTEEEEEEEEEESCCCCSSCSCTTSCSSTTTTCEEEEEEESS-SSEEEEEEEEECCCCTTSTTSSEEE
T ss_pred cCcCCCCeEEEECCEEEEEEEcCCCcccccccccccccccccCccEEEEEECCC-CcCcEeCcccCCCCCCCCccCCCEE
Confidence 478999 78899999999999754311 233699999988 89999999998652 2589
Q ss_pred eeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCcCceeeee-ccCC-------------------------Ccc
Q 045656 243 FPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPLEWKLEKI-IMKK-------------------------PLV 289 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~~We~~~~-Ll~~-------------------------~~v 289 (802)
.|.|+.++|++||+-... ....+.+..+.+.-..|+.... +++. .++
T Consensus 127 aPsvi~~dGkyyL~Yt~~~~~~~~~~~~~igvA~Sdd~~Gpw~~~~~Pvi~~~~~~~w~~ddd~~~~~~~~~~~d~~~~~ 206 (374)
T 3r4z_A 127 TPEVLRHNGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKSDAPILSPENDGVWDTDEDNRFLVKEKGSFDSHKVH 206 (374)
T ss_dssp EEEEEEETTEEEEEEEEECSSCCTTCCBEEEEEEESSTTCCCEECSSCSBCCCCCSEECSSSSCTTCEEECCSTTSSEEE
T ss_pred CCEEEEECCEEEEEEEeccCCCCCCCcceEEEEEECCCCCCeEECCCCEeCCCcCCceeecCCceEEEecCCccccCccc
Confidence 999999999999984321 2245666666553346775321 2221 268
Q ss_pred CCEEEEECCEEEEEEeCCCCCCC---C--CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeE-EEE
Q 045656 290 DPFMINHDGQYWLFGSDHSGFGT---T--QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNL-YRV 363 (802)
Q Consensus 290 DatI~~~dG~wwLF~S~~~~~g~---~--~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkL-yRp 363 (802)
||.+++++|+|||||+... .+. . ....+++++|++++|||++++.|||+... ....+|..++++ +++
T Consensus 207 ~P~v~~~~g~yyl~Y~~~~-~~~~~~~~~~~~~igvA~sds~~Gpw~~~~~~Pi~~~~------~dp~V~~~~~g~~~mv 279 (374)
T 3r4z_A 207 DPCLMFFNNRFYLYYKGET-MGESMNMGGREIKHGVAIADSPLGPYTKSEYNPITNSG------HEVAVWPYKGGMATML 279 (374)
T ss_dssp EEEEEEETTEEEEEEEEEC-TTCCEETTEECEEEEEEEESSTTCCCEECTTCCCCSSC------SSCCEEEETTEEEEEE
T ss_pred cceEEEECCEEEEEEEecC-CCCccccCCCcceEEEEEECCCCCCCEECCCCCEeCCC------CCCceEEeCCEEEEEE
Confidence 9999999999999998742 111 0 12368899999999999999999998742 135888887777 666
Q ss_pred cccCCCCCCceEEEEEeccCCccceEEec
Q 045656 364 GQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 364 ~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.++. -+++ .+++.+++..|+|.-+.
T Consensus 280 ~~~g---~~~~-~l~~S~Dg~~W~~~~~i 304 (374)
T 3r4z_A 280 TTDG---PEKN-TCQWAEDGINFDIMSHI 304 (374)
T ss_dssp CSSS---TTCS-EEEEETTSSSCEEEEEC
T ss_pred EecC---CCce-EEEECCCcCCeEEccee
Confidence 6552 2334 67778999999987555
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=165.07 Aligned_cols=196 Identities=23% Similarity=0.309 Sum_probs=136.9
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
+.||||. .++|||.+++.+++||||++.+.. ...|.+++|.| +.+|+..+.+|+.+
T Consensus 5 ~~NPil~-----------g~~~DP~i~~~~~~yY~~~s~~~~---~~gi~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~ 69 (528)
T 1yrz_A 5 IQNPILP-----------GFHPDPSIVRVGDDYYIATSTFEW---FPGVRIHHSRD-LKHWRFVSSPLTRTSQLDMKGNM 69 (528)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTE---ESBCEEEEESS-SSSCEEEECSBCSTTTCCCTTCC
T ss_pred ccCCccC-----------CCCCCCeEEEECCEEEEEEccCcc---CCCeEEEECCC-ccCceECccccCCcccccccCCC
Confidence 5799998 488999999999999999987543 23588999988 99999999888642
Q ss_pred --CceeeeEEEEeCCEEEEEeCCCC--CC-----eeEEEEeccCCcCceee-----------------------------
Q 045656 239 --WHLSFPYVFDYHGQIYMMPESRA--KG-----EVRLYRAVNFPLEWKLE----------------------------- 280 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPEss~--sg-----~l~LYra~~FP~~We~~----------------------------- 280 (802)
..+|+|.|+.++|++||+-.... .+ ++.+..+.+.-..|+..
T Consensus 70 ~~~~~wAP~i~~~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~~~iDp~vf~D~dG~~Yl~~~~~~~ 149 (528)
T 1yrz_A 70 NSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSSGFDPSLFHDDDGRKWLVNMIWDY 149 (528)
T ss_dssp TTCEECSCEEEEETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEECCCSCSCCEEEECTTSCEEEEEEEECC
T ss_pred CCCCEECCeEEEECCEEEEEEecccCCCCCcccceEEEEEeCCCCCCccccEECCCCcCCCceEECCCCCEEEEEeeccC
Confidence 34899999999999999843211 11 24455554321123310
Q ss_pred --------------------------eeccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 281 --------------------------KIIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 281 --------------------------~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
+.+.+. ..+.|.|++++|+||||+|.. +......+.+++|++|+|||
T Consensus 150 ~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~~---g~~~~~~~~~~rs~~~~GP~ 226 (528)
T 1yrz_A 150 RKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEG---GTEYEHAATLARSQSIDGPY 226 (528)
T ss_dssp CTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESSTTCCC
T ss_pred CCCCCCCCeEEEEEECCccCCCCCCCEEEEcCCCCCccCCCEEEEECCEEEEEEeCC---CCCCCcEEEEEEECCCCCCC
Confidence 001111 257788888888888888762 23334578999999999999
Q ss_pred eeCCCCCeeeCCC---CCCcccC-CccEEE-CCeEEEEcccCC------CCCCceEEEEEec
Q 045656 331 KPHKKNPIYNGDK---SLGARNG-GRPFVY-DGNLYRVGQDCA------ESYGRRVRTFKVE 381 (802)
Q Consensus 331 ~~hp~NPI~~~~~---~~~aR~G-G~vF~~-dGkLyRp~QdC~------~~YG~~L~l~~It 381 (802)
++++.|||+.... .....+| |.+|.. +|+.|++...+. ..+||.+.+.+|+
T Consensus 227 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~~~~~~~~~~~~~~~~~~~gR~~~l~~v~ 288 (528)
T 1yrz_A 227 ETDPSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVN 288 (528)
T ss_dssp EECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCBTTTBCTTCSEEEEEEEE
T ss_pred CcCCCCeEEEecCCCCCceEcCCcCeEEECCCCCEEEEEEEecCCCCCCCCCCcEEEEEEEE
Confidence 9999999997531 1112233 666766 799998887543 3567778777773
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=150.63 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=130.6
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC-----CceeeeEEEEe--CCEEEEEe
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED-----WHLSFPYVFDY--HGQIYMMP 257 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~-----~HLSyP~VF~~--dG~iYMiP 257 (802)
..++|||.+++.+++||||++.... ....|.+++|.| +.+|+..+.+|... .+++.|.|+.. +|++||+-
T Consensus 21 ~~~~~DP~i~~~~g~yyl~~t~~~~--~~~~i~~~~S~D-Lv~W~~~g~~l~~~~~~~~~~~wAP~v~~~~~~g~~yl~y 97 (306)
T 3kst_A 21 YLPIADPYVMFYNNKYYAYGTGGTT--AGEGFACFSSDD-LKNWKREGQALSATDSYGTWGFWAPEVYYVESKKKFYLFY 97 (306)
T ss_dssp SBCCEEEEEEEETTEEEEEEESCCS--SSSEEEEEEESS-SSEEEEEEEEEEGGGSSCSSCCEEEEEEEETTTTEEEEEE
T ss_pred cccCCCCEEEEECCEEEEEEecCCc--CCCCEEEEEeCC-ccccEECceecCCCCcccccccccCeEEEECCCCEEEEEE
Confidence 3578999999999999999997542 234799999988 99999999988542 46999999877 99999982
Q ss_pred --------------CC----------------------CCCCeeEEEEe-------------ccCCcCceeeee--cc--
Q 045656 258 --------------ES----------------------RAKGEVRLYRA-------------VNFPLEWKLEKI--IM-- 284 (802)
Q Consensus 258 --------------Es----------------------s~sg~l~LYra-------------~~FP~~We~~~~--Ll-- 284 (802)
+. ..+|+..|+-. .+--..|+.+.. ++
T Consensus 98 t~~~~i~va~s~~p~Gpw~~~~~~p~~~~~~iDp~vf~D~dG~~Yl~~~~~~~g~~i~~~~ls~d~~~~~~~~~~~~~~~ 177 (306)
T 3kst_A 98 SAEEHICVATSTTPEGPFRQEVKQPIWSEKSIDTSLFIDDDGTPYLYFVRFTDGNVIWVAQMTDDLMSIKTETLNQCIKA 177 (306)
T ss_dssp EETTEEEEEEESSTTCCCBCSSCCCSSSSCCEEEEEEECTTSCEEEEEEEESSSEEEEEEEBCTTSSCBCGGGCEEEECC
T ss_pred ECCCcEEEEEcCCCCCCcEeCCCccccCCCcccceEEEeCCCCEEEEEEEeCCCCEEEEEEeCcccccccCcceeeeccC
Confidence 10 11222222210 000001221110 11
Q ss_pred --------CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeC--CCCCCcccCCccE
Q 045656 285 --------KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNG--DKSLGARNGGRPF 354 (802)
Q Consensus 285 --------~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~--~~~~~aR~GG~vF 354 (802)
....+.|.|++++|+||||+|... ....++.+.+++|++|+|||++++.|||+.. .....+-.++.+|
T Consensus 178 ~~~w~~~~~~~~EgP~i~k~~G~YYL~~S~~~--~~~~~y~v~~a~S~s~~GPw~~~~~~pil~~~~~~~~~g~GH~~~v 255 (306)
T 3kst_A 178 EVSWELLQGKVAEGPSLLKKNGVYYLIYSANH--YENKGYGVGYATSDTPMGPWVKYSKNPLLQGDAATGLVGTGHGAPF 255 (306)
T ss_dssp CSGGGCSSSSBEEEEEEEEETTEEEEEEEESC--TTSTTCEEEEEEESSTTCCCEECTTCCSBSSBTTTTBCSCEEEEEE
T ss_pred CccceecCCCceecceEEEECCEEEEEEEeCC--CCCCCceEEEEEeCCCCCCCEeCCCCeeEeecCCCceecCCCCceE
Confidence 113679999999999999998742 2234668999999999999999999999984 2112222335566
Q ss_pred EE-CCeEEEEcccCC---CCCCceEEEEEec
Q 045656 355 VY-DGNLYRVGQDCA---ESYGRRVRTFKVE 381 (802)
Q Consensus 355 ~~-dGkLyRp~QdC~---~~YG~~L~l~~It 381 (802)
.. +|+.|++..... ...||.+.+.+++
T Consensus 256 ~~~~G~~~~vyh~~~~~~~~~~R~~~~~~v~ 286 (306)
T 3kst_A 256 QCKDGSWKYIFHAHWSAAEIQPRTSYIKDFA 286 (306)
T ss_dssp ECTTSCEEEEEEECSSSSCCCSCEEEEEEEE
T ss_pred ECCCCCEEEEEecccCCCCCCCceEEEEEEE
Confidence 65 899988765432 2467888888875
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=151.06 Aligned_cols=195 Identities=21% Similarity=0.352 Sum_probs=138.7
Q ss_pred cee-eCeeeE-EECCEEEEEEEeeeccC---------------CCceEEEEEEeCCCCCceEeeeeecCC----C---ce
Q 045656 186 NFV-ADPFFY-LQGNDLYLFYETKNSIT---------------MQGDIGVAKSVDKGATWQQLGIALDED----W---HL 241 (802)
Q Consensus 186 ~F~-ADPFll-~~~g~~ylF~E~~~~~~---------------~~G~I~va~S~D~g~tw~~~gvvLde~----~---HL 241 (802)
.++ +||.++ ..+|+|||||...+... ..-.|++++|.| +.+|+..+.||..+ | .+
T Consensus 87 g~~~~DP~~v~~~dG~yymfY~~~~~~~~G~~~~~~~~~~~~~~~~~i~~a~S~D-lv~W~~~g~~L~~~~~~~wd~~gv 165 (404)
T 4ak5_A 87 GVVRRDPSAMLKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKD-GLTWKEQGIAVKRGEKGAYDDRSV 165 (404)
T ss_dssp TEEEECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESS-SSEEEEEEEEECCCSTTSTTSSEE
T ss_pred ceeecCCcEEEEECCEEEEEEEeCCCcccccccccccccccccCccEEEEEECCC-CCCceeCceEeecCCCCccccCCE
Confidence 354 999955 66999999999876311 134799999987 89999999999752 2 38
Q ss_pred eeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCcCceeeee-ccC-------------------------CCc
Q 045656 242 SFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPLEWKLEKI-IMK-------------------------KPL 288 (802)
Q Consensus 242 SyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~~We~~~~-Ll~-------------------------~~~ 288 (802)
+.|.|++++|++||+-... ...+|.+..+.+--..|+.... ++. ..+
T Consensus 166 ~aP~Vi~~~Gkyym~Yt~~~~~~~~~~~~~IgvA~Sdsp~Gpwt~~~~Pvl~~~~~~~W~~ddd~~~~~~~~~~wD~~~~ 245 (404)
T 4ak5_A 166 FTPEVMEWKGKYYLCYQAVKSPYTVRVKNTIGMACADSPEGLWTKTDKPVLEPSDTGEWEGDEDNRFKVVSKGDFDSHKV 245 (404)
T ss_dssp EEEEEEEETTEEEEEEEEECSCCCTTCCCEEEEEEESSTTCCCEECSSCSBCCCSCCEECSSSSCTTCEEECCSTTSSEE
T ss_pred EeeEEEEECCEEEEEEEeccCCCCCCCcceEEEEEEeCCCCCceECCCceecCCCCcceeeccCceeeeccCCcccCCcE
Confidence 8999999999999984321 1233444444331134765322 221 125
Q ss_pred cCCEEEEECCEEEEEEeCCCCCCC---C--CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeE-EE
Q 045656 289 VDPFMINHDGQYWLFGSDHSGFGT---T--QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNL-YR 362 (802)
Q Consensus 289 vDatI~~~dG~wwLF~S~~~~~g~---~--~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkL-yR 362 (802)
+||++++++|+|||||+... .+. . ....+++++|++++|||++++.|||+... . -..+|..++.+ |+
T Consensus 246 ~~P~v~~~~g~yyl~Ysg~~-~~~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPv~~~~-----~-e~~Vw~~~dg~~~l 318 (404)
T 4ak5_A 246 HDPCIIPYNGKFYMYYKGER-MGEEITWGGREIKHGVAIAENPMGPYVKSEYNPISNSG-----H-EVCVWPYKGGIASL 318 (404)
T ss_dssp EEEEEEEETTEEEEEEEEEC-TTCCEETTEECCEEEEEEESSTTCCCEECTTCCSCSSC-----S-SCCEEEETTEEEEE
T ss_pred ECCEEEEECCEEEEEEECCC-CCCccccCCCcceEEEEEECCCCCCcEECCCCceecCC-----C-cceEEEeCCcEEEE
Confidence 79999999999999998742 121 0 13578999999999999999999998642 1 23888886666 77
Q ss_pred EcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 363 VGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 363 p~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
+.++. . +.+ .++..+++..|+|.-+.
T Consensus 319 l~~~g-~--~~g-~l~~S~Dg~~W~~~~~l 344 (404)
T 4ak5_A 319 ITTDG-P--EKN-TLQWSPDGINFEIMSVV 344 (404)
T ss_dssp ECSSS-T--TCS-EEEEESSSSCCEEEEEC
T ss_pred EEecC-C--Cce-EEEECCCCCeEEEeeee
Confidence 87763 2 333 67779999999987666
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-14 Score=149.70 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=137.2
Q ss_pred ceeeCeeeEEE----CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee-eeecCC----CceeeeEEEEe--CCEEE
Q 045656 186 NFVADPFFYLQ----GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG-IALDED----WHLSFPYVFDY--HGQIY 254 (802)
Q Consensus 186 ~F~ADPFll~~----~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g-vvLde~----~HLSyP~VF~~--dG~iY 254 (802)
..+| |-++.. +|++||||+..........|+||+|++....|++.+ +++... ++...|.||.+ ||++|
T Consensus 76 ~~wA-P~v~~~~~~~~Gkyylyyt~~~~~~~~~~i~va~s~~p~Gpw~~~~~p~~~~~~~g~~~~iDp~vf~dd~dG~~y 154 (311)
T 3qz4_A 76 NAWA-PCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSY 154 (311)
T ss_dssp EEEE-EEEEEEEETTEEEEEEEEEEEETTCSSCEEEEEEESSTTCCCEECSSCSBCSCTTSSSBSCCCEEEECTTTCCEE
T ss_pred CcCC-CeeEEeeecCCCEEEEEEEeccCCCCCeeEEEEEECCCCCCceECCcceEcCCCCCCcccccccEEEECCCCcEE
Confidence 4667 999988 999999999876554567899999887556899877 344332 67899999998 79999
Q ss_pred EEeCCCCCCeeEEEEeccCCcCceeeee-ccC--C-------CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 255 MMPESRAKGEVRLYRAVNFPLEWKLEKI-IMK--K-------PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~We~~~~-Ll~--~-------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
|+-.+ +.+.+.+..+--..|+-+.+ ++. + ..+.|.|++++|+||||+|... . ...++.+.+++|+
T Consensus 155 l~~g~---~~i~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~g~YyL~~s~~~-~-~~~~y~~~~~~S~ 229 (311)
T 3qz4_A 155 LYWGN---GYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDD-T-GSPNYHVVYGTAQ 229 (311)
T ss_dssp EEECB---SSCEEEEBCTTSSSBCGGGCEECCCCCCCTTTTCCCEEEEEEEETTEEEEEEEESC-T-TSTTCEEEEEEES
T ss_pred EEEcC---CCEEEEEeCCcccccCCCceEEeCCCCCcccccceeeccEEEEECCEEEEEEEcCC-C-CCCCceEEEEEcC
Confidence 99754 67777775443335543322 222 1 3799999999999999999742 1 1235689999999
Q ss_pred CCCCCCeeCCCCCeeeCCC--CCCcccCCccEEEC-C-eEEEEcccC-------CCCCCceEEEEEec
Q 045656 325 SPFGPWKPHKKNPIYNGDK--SLGARNGGRPFVYD-G-NLYRVGQDC-------AESYGRRVRTFKVE 381 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~~--~~~aR~GG~vF~~d-G-kLyRp~QdC-------~~~YG~~L~l~~It 381 (802)
+|+|||++++.|||+...+ ...+-.++.+|... | +.|++.+.. ...+||.+.|.+++
T Consensus 230 ~~~GPw~~~~~~pil~~~~~~~~~g~gH~~~~~~~~g~~w~~~yh~~~~~~~~~~~~~~R~~~~~~~~ 297 (311)
T 3qz4_A 230 SPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRME 297 (311)
T ss_dssp STTCCCEEEEEEEEECCBGGGTBEEEEEEEEEECTTSSCEEEEEEEECGGGTTSSGGGCEEEEEEEEC
T ss_pred CCCCCCEeCCCCcEEecCCCCceEcCCCCeEEEcCCCCEEEEEEecCcccCCCCCCCCCceEEEEEEE
Confidence 9999999998889887421 11122335566664 3 788877762 23468888888885
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=144.50 Aligned_cols=194 Identities=21% Similarity=0.369 Sum_probs=133.9
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeC--CCCC---ceEeeeeecC-----CCceeeeEEEE-eCCEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD--KGAT---WQQLGIALDE-----DWHLSFPYVFD-YHGQI 253 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D--~g~t---w~~~gvvLde-----~~HLSyP~VF~-~dG~i 253 (802)
...+| |-++..+|++||||+..........|+++++++ .... |+..+.++.. .++...|.||. +||+.
T Consensus 62 ~~~wA-P~v~~~~g~~ylyyt~~~~~~~~~~igva~s~~~dp~gp~~~w~~~~~v~~~~~~~~~~~~iDp~vf~D~dG~~ 140 (318)
T 1gyh_A 62 GHLWA-PDIYQHKGLFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQV 140 (318)
T ss_dssp SEEEE-EEEEEETTEEEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCE
T ss_pred ccccc-CeEEEECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCCcceecCCcccccCCCCCCCCcccCCeEECCCCCE
Confidence 45778 999999999999999754433456899999876 1233 9998876643 36789999997 58999
Q ss_pred EEEeCCCCCCeeEEEEecc------CCcCceee-----ee-ccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCC
Q 045656 254 YMMPESRAKGEVRLYRAVN------FPLEWKLE-----KI-IMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQN 315 (802)
Q Consensus 254 YMiPEss~sg~l~LYra~~------FP~~We~~-----~~-Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n 315 (802)
||+-.+. .+.+.+.+..+ .|..|+.. .. +.+ ...+.|.|++++|+||||+|...++ |...+
T Consensus 141 Yl~~g~~-~~~i~~~~l~~d~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~g~yYL~~s~~~~~~g~~~~ 219 (318)
T 1gyh_A 141 WMSFGSF-WGGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDST 219 (318)
T ss_dssp EEEECBS-TTCEEEEEBCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEETTEEEEEEEESCCSCGGGCC
T ss_pred EEEeecc-CCCEEEEEeCCccccccceeecceecccCcceeecccCCCCcceeccEEEEECCEEEEEEEeCCCcCCCCCc
Confidence 9996442 35677777532 35567532 11 221 2489999999999999999864222 34456
Q ss_pred CcEEEEEEcCCCCCCeeCCCCCeeeCC--------CCCCcccCCccEEECCeEEEEcccCCC-CCCc-eEEEEEe
Q 045656 316 GQLEIWYSSSPFGPWKPHKKNPIYNGD--------KSLGARNGGRPFVYDGNLYRVGQDCAE-SYGR-RVRTFKV 380 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp~NPI~~~~--------~~~~aR~GG~vF~~dGkLyRp~QdC~~-~YG~-~L~l~~I 380 (802)
+.+.+++|++|+|||++.+.||++... ....+-.++.+|..+|+.|++...+.. ..|+ .+.+.++
T Consensus 220 y~~~~~rS~s~~GP~~~~~g~p~~~~~g~~~~~~~~~~~g~GH~~~~~~~G~~~~~yh~~~~~~~g~~~~~~~~~ 294 (318)
T 1gyh_A 220 YHLVVGRSKQVTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDGKDYLVLHAYEAADNYLQKLKILNL 294 (318)
T ss_dssp CEEEEEEESSTTSCCBCTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEETTEEEEEEEEEEGGGTTEEEEEEEEC
T ss_pred ceEEEEEcCCCCCCCCcCCCCEeecCCCcEEecCCCcEEcCCCCEEEEcCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 689999999999999999889987531 111122346667779999888765432 2343 3444444
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-13 Score=140.07 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=113.4
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCC-CCceEeeeeecC----CCceeeeEEEE-eCCEEEEEeC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKG-ATWQQLGIALDE----DWHLSFPYVFD-YHGQIYMMPE 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g-~tw~~~gvvLde----~~HLSyP~VF~-~dG~iYMiPE 258 (802)
...+| |-++..+|++||||+..........|++++++|.. ..|++.+.+|.. .++...|.||. .||+.||+-.
T Consensus 71 ~~~wA-P~v~~~~G~yylyyt~~~~~~~~~~i~va~s~~p~~Gpw~~~~~~l~~~~~~~~~~iDp~vf~d~dG~~Yl~~g 149 (293)
T 1uv4_A 71 QNQWA-PDIQYYNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFG 149 (293)
T ss_dssp SBCEE-EEEEEETTEEEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEEC
T ss_pred Cceec-ceEEEECCEEEEEEEecCCCCCcceEEEEECCCCCCCCCccCCccEecCCCCCCCCCCCCeEECCCCCEEEEEE
Confidence 35677 99999999999999975443345679999987743 489998876643 56889999996 5899999964
Q ss_pred CCCCCeeEEEEeccCCcCceeee-eccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCCCCCCe
Q 045656 259 SRAKGEVRLYRAVNFPLEWKLEK-IIMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSPFGPWK 331 (802)
Q Consensus 259 ss~sg~l~LYra~~FP~~We~~~-~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSplGPW~ 331 (802)
+. .+.+.+++..+--.++.-+. .++. ...+.|.|++++|+||||+|...++ |...++.+.+++|++|+|||+
T Consensus 150 ~~-~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~~EgP~i~k~~g~yyL~~s~~~~~~g~~~~y~~~~~~s~~~~GP~~ 228 (293)
T 1uv4_A 150 SF-WSGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYL 228 (293)
T ss_dssp BS-TTCEEEEEECTTTCSEEEEEEEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCB
T ss_pred ec-CCCEEEEEECchhCccCCcceEEeecCCCCCccCccEEEEECCEEEEEEEeCCCcCCCCCcceEEEEEeCCCCCCCC
Confidence 42 35677877643212232222 2332 2489999999999999999874222 233445788999999999999
Q ss_pred eCCCCCeeeC
Q 045656 332 PHKKNPIYNG 341 (802)
Q Consensus 332 ~hp~NPI~~~ 341 (802)
+.+.||++..
T Consensus 229 ~~~~~p~~~~ 238 (293)
T 1uv4_A 229 DKSGKSMLEG 238 (293)
T ss_dssp CTTSCBGGGT
T ss_pred ccCCCeeecC
Confidence 9989998754
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=143.15 Aligned_cols=232 Identities=14% Similarity=0.090 Sum_probs=154.2
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEEC--CEEEEEEEeeeccC-CCceEEEEEEeCCCCCceEeeeeecCC------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQG--NDLYLFYETKNSIT-MQGDIGVAKSVDKGATWQQLGIALDED------ 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~--g~~ylF~E~~~~~~-~~G~I~va~S~D~g~tw~~~gvvLde~------ 238 (802)
..||||+ .++|||.+++.+ ++||||++...... ....|.+++|.| +.+|++.+.+|+.+
T Consensus 6 ~~NPi~~-----------g~~~DP~i~~~~~dg~yyl~~t~~~~~~~~~~~~~~~~S~D-Lv~W~~~g~~l~~~~~~~~~ 73 (311)
T 3qz4_A 6 SGNPILP-----------GFHADPEVLYSHQTKRYYIYPTSDGFPGWGGSYFKVFSSKN-LKTWKEETVILEMGKNVSWA 73 (311)
T ss_dssp CCSCCSS-----------SSEEEEEEEEETTTTEEEEEEEECSSGGGCCCEECCEEESS-SSSCEECCCCEEBTTTBTTE
T ss_pred CCCCccC-----------CCcCCceEEEECCCCEEEEEEecCCCCCCCCcEEEEEECCC-CCCcEECceecccccCCCcc
Confidence 4799998 478999988877 99999998522211 123499999987 99999999988542
Q ss_pred -CceeeeEEEEe----CCEEEEEeCC----CCCCeeEEEEeccCCc-Cceeeee-ccC------CCccCCEEEEE--CCE
Q 045656 239 -WHLSFPYVFDY----HGQIYMMPES----RAKGEVRLYRAVNFPL-EWKLEKI-IMK------KPLVDPFMINH--DGQ 299 (802)
Q Consensus 239 -~HLSyP~VF~~----dG~iYMiPEs----s~sg~l~LYra~~FP~-~We~~~~-Ll~------~~~vDatI~~~--dG~ 299 (802)
.+++.|.|+.+ +|++||+--. ....++.+..+.+ |. .|+.... ++. ...+||++|+. ||+
T Consensus 74 ~~~~wAP~v~~~~~~~~Gkyylyyt~~~~~~~~~~i~va~s~~-p~Gpw~~~~~p~~~~~~~g~~~~iDp~vf~dd~dG~ 152 (311)
T 3qz4_A 74 NGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADS-PTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGK 152 (311)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSCEEEEEEESS-TTCCCEECSSCSBCSCTTSSSBSCCCEEEECTTTCC
T ss_pred cCCcCCCeeEEeeecCCCEEEEEEEeccCCCCCeeEEEEEECC-CCCCceECCcceEcCCCCCCcccccccEEEECCCCc
Confidence 36899999999 9999999422 2235566666544 44 6886432 332 24799999999 899
Q ss_pred EEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC----CCCcccCCccEEECCeEEEEcccCCC-CCCce
Q 045656 300 YWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK----SLGARNGGRPFVYDGNLYRVGQDCAE-SYGRR 374 (802)
Q Consensus 300 wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~dGkLyRp~QdC~~-~YG~~ 374 (802)
+||++.. ..+.++.-+..+..++..+ .++..... ......|..+|+.+|++|++.=.+.. .....
T Consensus 153 ~yl~~g~---------~~i~~~~l~~d~~~~~~~~-~~i~~~~~~~~~~~~~~EgP~i~k~~g~YyL~~s~~~~~~~~y~ 222 (311)
T 3qz4_A 153 SYLYWGN---------GYMAGAELNDDMLSIKEET-TVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGSPNYH 222 (311)
T ss_dssp EEEEECB---------SSCEEEEBCTTSSSBCGGG-CEECCCCCCCTTTTCCCEEEEEEEETTEEEEEEEESCTTSTTCE
T ss_pred EEEEEcC---------CCEEEEEeCCcccccCCCc-eEEeCCCCCcccccceeeccEEEEECCEEEEEEEcCCCCCCCce
Confidence 9999853 2455554333344454322 12222110 01246788899999999997655432 23357
Q ss_pred EEEEEeccCC-ccceEEec----cccCCCCCCccccccccCCCC-CeEEEEeCc
Q 045656 375 VRTFKVEILT-KNEYKELE----GRNAWNGARYHHLDAQQLSSG-EWIAVMDGD 422 (802)
Q Consensus 375 L~l~~It~Lt-~~~y~E~~----~~~~w~~~~~Hhld~~~l~~g-~~i~vvDG~ 422 (802)
+.+.+.+++. |++++... ......-.+..|-++-+.++| +|++|+=+.
T Consensus 223 ~~~~~S~~~~GPw~~~~~~pil~~~~~~~~~g~gH~~~~~~~~g~~w~~~yh~~ 276 (311)
T 3qz4_A 223 VVYGTAQSPLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRI 276 (311)
T ss_dssp EEEEEESSTTCCCEEEEEEEEECCBGGGTBEEEEEEEEEECTTSSCEEEEEEEE
T ss_pred EEEEEcCCCCCCCEeCCCCcEEecCCCCceEcCCCCeEEEcCCCCEEEEEEecC
Confidence 8889998875 77776522 222223345677788888876 688887774
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-13 Score=142.00 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=132.3
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeC--CCCC---ceEeeeeecC----CCceeeeEEEE-eCCEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD--KGAT---WQQLGIALDE----DWHLSFPYVFD-YHGQIY 254 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D--~g~t---w~~~gvvLde----~~HLSyP~VF~-~dG~iY 254 (802)
...+| |.++..+|++||||+..........|+++++++ .... |++.+.++.. .++..+|.||. +||+.|
T Consensus 80 ~~~wA-P~v~~~~g~yylyyt~~~~~~~~~~igva~s~~~dP~gp~~~w~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Y 158 (314)
T 3cu9_A 80 DHLWA-PDICFYNGIYYLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPW 158 (314)
T ss_dssp CEEEE-EEEEEETTEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEE
T ss_pred Cceec-CcEEEECCEEEEEEEeccCCCCCceEEEEEeCCCCCCCCCcCcccCCeEecCCCCCCCCccCCCeEEcCCCCEE
Confidence 35677 999999999999999754433456899999866 1233 9998876653 46789999997 589999
Q ss_pred EEeCCCCCCeeEEEEeccC---Cc-CceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEc
Q 045656 255 MMPESRAKGEVRLYRAVNF---PL-EWKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSS 324 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~F---P~-~We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~Ad 324 (802)
|+-.+. .+.+.+.+..+- +. .|+.. .+.. ...+.|.|++++|+||||+|...++ |....+.+.+++|+
T Consensus 159 l~~g~~-~~~i~~~~l~~d~~~~~~~~~~~-~~~~~~~~~~~~EgP~i~k~~G~yyL~~s~~~~~~g~~~~y~~~~~~s~ 236 (314)
T 3cu9_A 159 LSFGSF-WSGIQLIQLDTETMKPAAQAELL-TIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAVGRSK 236 (314)
T ss_dssp EEECBS-TTCEEEEECCTTTCSCCTTCCCE-EEECCSSSSCCEEEEEEEEETTEEEEEEEESCCSSGGGCCCEEEEEEES
T ss_pred EEEecc-CCcEEEEEECcccCcccCCCceE-EecccCCCCCccCccEEEEECCEEEEEEEcCCcccCCCCcceEEEEEeC
Confidence 997553 245777775321 11 23321 1221 2489999999999999999863222 34456689999999
Q ss_pred CCCCCCeeCCCCCeeeCC--------CCCCcccCCccEEECCeEEEEcccCCC-CCC-ceEEEEEe
Q 045656 325 SPFGPWKPHKKNPIYNGD--------KSLGARNGGRPFVYDGNLYRVGQDCAE-SYG-RRVRTFKV 380 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~--------~~~~aR~GG~vF~~dGkLyRp~QdC~~-~YG-~~L~l~~I 380 (802)
+++|||++.+.||++... ....+-.++.+|..+|+.|++...+.. ..| +.+.+.++
T Consensus 237 s~~GP~~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~~~~~~g~~~~~yh~~~~~~~g~r~~~~~~~ 302 (314)
T 3cu9_A 237 DITGPYVDKNGVSMMQGGGTILDEGNDRWIGPGHCAVYFSGVSAILVNHAYDALKNGEPTLQIRPL 302 (314)
T ss_dssp STTSCCBCTTSCBGGGTCCEEEECCCSSEEEEEEEEEEEETTEEEEEEEEEETTTTTEEEEEEEEE
T ss_pred CCCCCCCcCCCCccccCCCcEeecCCCcEEcCCCCEEEEcCCCEEEEEEeeeCCCCCeeEEEEEEE
Confidence 999999999889986531 111112345667779999888775432 234 34455555
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-13 Score=153.32 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=159.7
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
+.||||. .|+|||.+++.+++||||.+.+.. ...|.+++|.| +.+|+..+.+|+.+
T Consensus 4 ~~NPil~-----------g~~~DP~i~~~~~~yY~~~s~~~~---~~gi~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~ 68 (535)
T 2exh_A 4 IKNPILT-----------GFHPDPSICRVGDDYYIAVSTFEW---FPGVRIYHSKD-LKNWRLVARPLNRLSQLNMIGNP 68 (535)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTE---ESBCEEEEESS-SSSCEEEECCBCSTTTCCCTTCC
T ss_pred ccCCccC-----------CCCCCCEEEEECCEEEEEECCCCC---CCCeEEEECCC-CCCcEECccccCCcccccccCCC
Confidence 5799998 488999999999999999887532 23688999988 99999999988653
Q ss_pred --CceeeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCC
Q 045656 239 --WHLSFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHS 308 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~ 308 (802)
..+|+|.|+.++|++||+-... ....+.+..+.+.-..|+. +..++...+||++|.. ||++||++....
T Consensus 69 ~~~~~WAP~i~~~~g~~ylyyt~~~~~~g~~~~~~~~va~s~~~~Gpw~~-p~~~~~~~iDp~vf~DddG~~Yl~~~~~~ 147 (535)
T 2exh_A 69 DSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSD-PIYLNSSGFDPSLFHDEDGRKYLVNMYWD 147 (535)
T ss_dssp TTCBBCSCEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCC-CEECCCSCSCCEEEECTTSCEEEEEEEEC
T ss_pred CCCCEECCeEEEECCEEEEEEEeccCCCCCccccceEEEEeCCCCCCccc-cEecCCCcCCCceEECCCCCEEEEEEecC
Confidence 3589999999999999984321 1235566666553335875 3445667899999998 899999986321
Q ss_pred -CCCCCCCCcEEEEEEcCCCCCCeeCC-CCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-c
Q 045656 309 -GFGTTQNGQLEIWYSSSPFGPWKPHK-KNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-K 385 (802)
Q Consensus 309 -~~g~~~n~~L~i~~AdSplGPW~~hp-~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~ 385 (802)
..+......+.++.-+..+ |+.-. ...|..+. ......|..+|+.+|++|++.-.....+++++.+.+.+.++ |
T Consensus 148 ~~~~~~~~~~i~~~~l~~d~--~~~~g~~~~i~~~~-~~~~~EgP~i~k~~G~YYL~~s~ggt~~~~~~~~~rs~s~~GP 224 (535)
T 2exh_A 148 HRVDHHPFYGIVLQEYSVEQ--KKLVGEPKIIFKGT-DLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGP 224 (535)
T ss_dssp CCTTSCSEEEEEEEEEETTT--TEEEEEEEEEECCC-TTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCC
T ss_pred CccCCCCCCcEEEEEECCcc--CCCCCCcEEEEcCC-CCCccccceEEEECCEEEEEEeCCCCCCCeEEEEEEeCCCCCC
Confidence 0011111244444423332 22111 11233322 12357889999999999998866545678899999998775 5
Q ss_pred cceEEe-c---cc--cCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 386 NEYKEL-E---GR--NAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 386 ~~y~E~-~---~~--~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
++.+.. + .. ..-.-.+..|-++-+-++|+|++|.-+.|-
T Consensus 225 ~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~~ 269 (535)
T 2exh_A 225 YEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRP 269 (535)
T ss_dssp CEECTTCCSEESTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECC
T ss_pred CccCCCcceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEccC
Confidence 443321 1 11 011112455678888889999999987763
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-13 Score=151.78 Aligned_cols=234 Identities=15% Similarity=0.199 Sum_probs=158.5
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
+.||||. .|+|||.+++.+++|||+.+.+.. ...|.+++|.| +.+|+..+.+|+.+
T Consensus 3 ~~NPil~-----------~~~~DP~i~~~~~~yY~~~s~~~~---~~gi~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~ 67 (538)
T 3c2u_A 3 IQNPVLK-----------GFNPDPSIVRAGDDYYIATSTFEW---FPGVQIHHSKD-LVHWHLVAHPLSTTEFLDMKGNP 67 (538)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTE---ESBCEEEEESS-SSSCEEEECSBCSTTTCCCTTCC
T ss_pred ccCCccC-----------CCCCCCEEEEECCEEEEEEccCCC---CCCeEEEECCC-CCCcEECccccCCcccccccCCC
Confidence 4799998 488999999999999999887532 23688999988 99999999888643
Q ss_pred --CceeeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCC
Q 045656 239 --WHLSFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHS 308 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~ 308 (802)
..+|+|.|+.++|++||+-... ...++.+..+.+.-..|+. ++.++...+||++|.. ||+.||++....
T Consensus 68 ~~~~~WAP~i~~~~g~~yly~t~~~~~~g~~~~~~~~va~s~~p~Gpw~~-p~~~~~~~iDp~~f~DddG~~Yl~~~~~~ 146 (538)
T 3c2u_A 68 DSGGIWAPDLSYADGKFWLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSK-PILLNGAGFDASLFHDPSGKKYLVNMYWD 146 (538)
T ss_dssp TTCEECSCEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTCCCCC-CEEEECSCSCCEEEECTTSCEEEEEEEEC
T ss_pred CCCCEECCeEEEECCEEEEEEEeccCCCCCcccccEEEEEECCCCCCccc-cEecCCCcCCCeeEECCCCCEEEEEEecC
Confidence 3489999999999999994321 1235666666653335975 3445667899999997 899999986311
Q ss_pred -CCCCCCCCcEEEEEEcCCC----CCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccC
Q 045656 309 -GFGTTQNGQLEIWYSSSPF----GPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEIL 383 (802)
Q Consensus 309 -~~g~~~n~~L~i~~AdSpl----GPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~L 383 (802)
..+......+.++.-+..+ |+.+ .|..+. ......|..+|+.+|++|++.-.....+++++.+.+.+.+
T Consensus 147 ~~~~~~~~~~i~~~~l~~d~~~~~g~~~-----~i~~~~-~~~~~EgP~i~k~~G~YYL~~s~gg~~~~~~~~~~rS~s~ 220 (538)
T 3c2u_A 147 QRVYHHNFYGIALQEYSVAEEKLIGKPE-----IIYKGT-DIAYTEGPHLYYINDMYYLMTAEGGTTYQHSETIARSKTI 220 (538)
T ss_dssp CCTTSCSEEEEEEEEEETTTTEECSCCE-----EEECCC-TTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESST
T ss_pred CccCCCCCCCEEEEEECCccCCCCCCCE-----EEecCC-CCCccccceEEEECCEEEEEEecCCCCCCeEEEEEEECCC
Confidence 1111112245554433332 3322 233322 1236788999999999999987765567889999999988
Q ss_pred C-ccceEEe-c--ccc---CCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 384 T-KNEYKEL-E--GRN---AWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 384 t-~~~y~E~-~--~~~---~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
+ |++.+.. + ... .-.-.+..|-++-+-++|+|++|.=+.+
T Consensus 221 ~GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~ 267 (538)
T 3c2u_A 221 HGPYEIQPDYPLLSAWKEVHNPLQKCGHASLVETQNGQWYLAHLTGR 267 (538)
T ss_dssp TCCCEECTTCCSBCCTTCTTCSSEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCCccCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEcc
Confidence 6 5443321 1 110 1111245566888888899988876654
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-13 Score=150.32 Aligned_cols=238 Identities=15% Similarity=0.193 Sum_probs=157.7
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
+.||||. .++|||.+++.+++||||.+.+... ..|.+++|.| +.+|+..+.+|+.+
T Consensus 3 ~~NPil~-----------g~~~DP~ii~~~~~yY~~~s~~~~~---~gi~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~ 67 (533)
T 1yif_A 3 ITNPVLK-----------GFNPDPSICRAGEDYYIAVSTFEWF---PGVQIHHSKD-LVNWHLVAHPLQRVSQLDMKGNP 67 (533)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTEE---SBCEEEEESS-SSSEEEEECSBCSTTTCCCTTCC
T ss_pred ccCCccC-----------CCCCCCeEEEECCEEEEEEecCCCC---CCeEEEEeCC-CCCCeECCccccCcccccccCCC
Confidence 4799998 4789999999999999998875432 3589999988 99999999888642
Q ss_pred --CceeeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCC
Q 045656 239 --WHLSFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHS 308 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~ 308 (802)
..+|+|.|+.++|++||+-... ...++.+..+.+....|+. ++.++...+||++|.. ||++||++....
T Consensus 68 ~~~~~WAP~i~~~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~-p~~~~~~~iDp~~f~D~dG~~Yl~~~~~~ 146 (533)
T 1yif_A 68 NSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSE-PIKLNSSGFDASLFHDTDGKKYLLNMLWD 146 (533)
T ss_dssp TTCBBCSCEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCC-CEECCCSCSCCEEEECTTSCEEEEEEEEC
T ss_pred CCCCEECceEEEECCEEEEEEEeccCCCCCcccccEEEEEeCCCCCCccc-cEEcCCCcCCCceEECCCCCEEEEEEecc
Confidence 4589999999999999994321 1234566666553236975 4455667899999985 899999986311
Q ss_pred -CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-cc
Q 045656 309 -GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KN 386 (802)
Q Consensus 309 -~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~ 386 (802)
..+......+.++.-+..+..... +...|..+. ......|..+|+.+|++|++.-.....+++++.+.+.+.++ |+
T Consensus 147 ~~~g~~~~~~i~~~~l~~d~~~~~g-~~~~i~~~~-~~~~~EgP~i~k~~G~YYL~~s~gg~~~~~~v~~~rs~s~~GP~ 224 (533)
T 1yif_A 147 HRIDRHSFGGIVIQEYSDKEQKLIG-KPKVIFEGT-DRKLTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPY 224 (533)
T ss_dssp CCTTSCSEEEEEEEEEETTTTEECS-CCEEEECCC-TTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cccCCCCCCCEEEEEECCccCCCCC-CcEEEEcCC-CCCccccceEEEECCEEEEEEeCCCCCCCeEEEEEEECCCCcee
Confidence 111111224444442222211110 012233322 12357889999999999998876555678899999998876 54
Q ss_pred ceEEe-c---ccc--CCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 387 EYKEL-E---GRN--AWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 387 ~y~E~-~---~~~--~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
+.+.. + ... .-.-.+.-|-++-+-++|+|++|.=+.+
T Consensus 225 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~ 267 (533)
T 1yif_A 225 EVHPDNPILTSWHDPGNPLQKCGHASIVQTHTDEWYLAHLTGR 267 (533)
T ss_dssp EECTTCCSEECTTCTTSSSEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred eeCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEcc
Confidence 43321 1 110 0111234456888888899999987766
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=138.22 Aligned_cols=183 Identities=18% Similarity=0.164 Sum_probs=134.1
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCC-CceEEEEEEeCCCCCceE-ee-eeec--------CCCceeeeEEEEe-CCEE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITM-QGDIGVAKSVDKGATWQQ-LG-IALD--------EDWHLSFPYVFDY-HGQI 253 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~-~G~I~va~S~D~g~tw~~-~g-vvLd--------e~~HLSyP~VF~~-dG~i 253 (802)
..+| |-++..+|++||||+....... ...|+||++++....|++ .+ +++. ..++...|.||.+ ||+.
T Consensus 74 ~~WA-P~i~~~~Gkyylyyt~~~~~~~~~~~i~va~s~~p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~DddG~~ 152 (307)
T 3qee_A 74 DAWA-SQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQA 152 (307)
T ss_dssp EEEE-EEEEEETTEEEEEEEEEECTTSCSEEEEEEEESSTTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEECTTSCE
T ss_pred CccC-ceEEEECCEEEEEEEeccCCCCCceEEEEEEECCCCCCCEeCCCCeeEecCccccCCCCcCcccCceEECCCCCE
Confidence 4788 9999999999999998654322 368999998876678998 34 3343 2467899999986 7899
Q ss_pred EEEeCCCCCCeeEEEEeccCCcCceeeeeccC---CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 254 YMMPESRAKGEVRLYRAVNFPLEWKLEKIIMK---KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 254 YMiPEss~sg~l~LYra~~FP~~We~~~~Ll~---~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
||+=.+. .+.+.+..+-...|+-+...+. ...+.|.|++++|+||||+|.. ....+.+++|++++|||
T Consensus 153 Yl~~g~~---~i~~~~l~~d~~~~~g~~~~i~~~~~~~EgP~i~k~~g~YyL~~s~~------~~~~~~~~~s~~~~GP~ 223 (307)
T 3qee_A 153 YLFWGNT---RPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMG------FPEKIGYAMGKSIKGPW 223 (307)
T ss_dssp EEEECSS---SCEEEEECTTSSSEEEEEEECCCCTTEEEEEEEEECC-CEEEEEEET------TTTEEEEEEESSTTCCC
T ss_pred EEEEeCC---cEEEEEECCccccccCceEEeCCCCCccCceEEEEECCEEEEEEECC------CCcEEEEEECCCCCCCc
Confidence 9996543 5666666544456655444333 2489999999999999999872 35689999999999999
Q ss_pred eeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC-----CCCCceEEEEEec
Q 045656 331 KPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA-----ESYGRRVRTFKVE 381 (802)
Q Consensus 331 ~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~-----~~YG~~L~l~~It 381 (802)
+.. ||+.......+-+++.+|..+|+.|++..... ..+||.+.+.+++
T Consensus 224 ~~~---~il~~~~~~~g~gH~~~v~~~G~~~~~yh~~~~~~~g~~~~R~~~~~~~~ 276 (307)
T 3qee_A 224 VYK---GILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELF 276 (307)
T ss_dssp EEE---EEEECCCBTCSCCCCEEEEETTEEEEEEEESCCTTTCBTTBCEEEEEEEC
T ss_pred EEC---CEEecCCCcccCCCccEEEeCCcEEEEEccCcccCCCCCcceEEEEEEEE
Confidence 976 57776433334455677777999998766543 2467888888885
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=144.98 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=131.0
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeecc------------CCCceEEEEEEeCCCCCceEeeeee
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSI------------TMQGDIGVAKSVDKGATWQQLGIAL 235 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~------------~~~G~I~va~S~D~g~tw~~~gvvL 235 (802)
..|||+. ..|.|||.+++.++++|||.+..... .....|.+++|.| +.+|++++.||
T Consensus 12 ~~NPi~~----------~~~~~DP~i~~~~g~yYly~t~~~~~~~~~g~~~~~~~~~~~~i~i~~S~D-Lv~W~~~g~v~ 80 (487)
T 3c7f_A 12 NSNPLID----------HHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSAD-MVNWTDHGAIP 80 (487)
T ss_dssp CCCSSCC----------SSCCEEEEEEEETTEEEEEEECCCCEECTTSCEECCCSTTCCSEEEEEESS-SSSEEEEEEEC
T ss_pred CCCCccC----------CCcCCCCCeEEECCEEEEEEcCCcccccccccccccccccccceEEEECCC-CcCcEEccccc
Confidence 5899988 35789999999999999999863210 1235789999987 99999999887
Q ss_pred cCC--------------CceeeeEEEEe--C--CEEEEEeCCCCCCeeEEEEeccCCcC-cee-----------------
Q 045656 236 DED--------------WHLSFPYVFDY--H--GQIYMMPESRAKGEVRLYRAVNFPLE-WKL----------------- 279 (802)
Q Consensus 236 de~--------------~HLSyP~VF~~--d--G~iYMiPEss~sg~l~LYra~~FP~~-We~----------------- 279 (802)
... -++|+|.|..+ | |++||+--.. ...+-+..+.+ |.. |+.
T Consensus 81 ~~~~~~~~~g~~~~~w~~~~WAP~v~~~~~~g~g~yylyyt~~-~~~i~va~s~~-p~Gpw~~~~g~pli~~~~~g~~~~ 158 (487)
T 3c7f_A 81 VAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANS-GGGIGVLTADS-PIGPWTDPIGKPLVTPSTPGMSGV 158 (487)
T ss_dssp CBCSTTGGGGTCSBTTCSCCEEEEEEEEEETTEEEEEEEEEST-TBCEEEEEESS-TTCCCBCSSSSCSBCTTSTTCTTC
T ss_pred cCCcccccccccccCccccCcchheEEEecCCCCeEEEEEEcC-CcEEEEEEeCC-CCCCcccCCCCeEeecCCCCccCC
Confidence 542 25899999876 4 6999983221 12233333221 111 211
Q ss_pred -------------------------------------------------------eeeccCCC--ccCCEEEEECCEEEE
Q 045656 280 -------------------------------------------------------EKIIMKKP--LVDPFMINHDGQYWL 302 (802)
Q Consensus 280 -------------------------------------------------------~~~Ll~~~--~vDatI~~~dG~wwL 302 (802)
+.+.++.+ .+.|.|++++|+|||
T Consensus 159 ~~~iDp~vf~DddG~~Yl~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~g~~~~i~~p~~~Egp~i~k~~G~YYl 238 (487)
T 3c7f_A 159 VWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDSGLHKYNGTYYY 238 (487)
T ss_dssp SSBCCCEEEECTTSCEEEEEECCCSSTTSCCHHHHHCCCCEEEEEECTTSSSEEEEEEEECCTTEEEEEEEEEETTEEEE
T ss_pred CCccCCceEEcCCCCEEEEECCcccCccccccccccCCCceEEEEECCCeeeccCccEEecCCceEecceEEEECCEEEE
Confidence 01111112 567778889999999
Q ss_pred EEeCCCCCCC----CCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC---CCCcccCCccEEECCeEEEEcccCCC------
Q 045656 303 FGSDHSGFGT----TQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK---SLGARNGGRPFVYDGNLYRVGQDCAE------ 369 (802)
Q Consensus 303 F~S~~~~~g~----~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~---~~~aR~GG~vF~~dGkLyRp~QdC~~------ 369 (802)
++|... .++ ...+.+.+++|++|+|||+.. +||+.... ....-+++.+|..+|+.|+..+....
T Consensus 239 ~ys~~~-~~t~~~~~~~~~i~~~~S~s~~GP~~~~--~~il~~~~~~~~~~g~gH~~v~~~~G~w~~~yh~~~~~~~~~g 315 (487)
T 3c7f_A 239 SYCINF-GGTHPADKPPGEIGYMTSSSPMGPFTYR--GHFLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFG 315 (487)
T ss_dssp EEEECS-SSCCCTTSCTTSEEEEEESSTTCCCEEE--EEEECCHHHHHSSCCCCCEEEEEETTEEEEEEEESHHHHHHHS
T ss_pred EEECCC-CCCcccCCCCceeEEEEcCCCCCCceEC--ceeccCCCcccCCCCCCCceEEEECCeEEEEEecccccccccC
Confidence 887631 111 134689999999999999986 78887521 01122345677779999998876531
Q ss_pred --CCCceEEEEEec
Q 045656 370 --SYGRRVRTFKVE 381 (802)
Q Consensus 370 --~YG~~L~l~~It 381 (802)
..+|.+.+.+++
T Consensus 316 ~~~~~R~~~i~~v~ 329 (487)
T 3c7f_A 316 AGKGYRSPHINKLV 329 (487)
T ss_dssp SCTTCCEEEEEECC
T ss_pred CCCCccceEEEEEE
Confidence 235778887774
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-12 Score=134.43 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=150.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeecc-----CCCceEEEEEEeCCCCCceEeeeeecC---CC
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSI-----TMQGDIGVAKSVDKGATWQQLGIALDE---DW 239 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~-----~~~G~I~va~S~D~g~tw~~~gvvLde---~~ 239 (802)
..||||+ ..|.|||.+++.+|++|||++..... .....|.+++|.| +.+|++.+.||+. +|
T Consensus 2 ~~NPil~----------~~~~~DP~i~~~~g~yYl~~t~~~~~~~~~~~~~~~~~v~~S~D-Lv~W~~~g~~l~~~~~~~ 70 (307)
T 3qee_A 2 AENPIFT----------DVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDD-MANWEAHGPGLRAKDFTW 70 (307)
T ss_dssp CCSSSCS----------SSEEEEEEEEEETTEEEEEEEEECCSSSSSCCCEEEEEEEEESS-SSSCEEEEEEEEGGGSTT
T ss_pred CCCCCCC----------CCccCCCceEEECCEEEEEEccCcccCCccccccCcEEEEECCC-CCCceECccccccCCCCc
Confidence 4799988 35789999999999999999854321 1235788999887 8999999999863 33
Q ss_pred ---ceeeeEEEEeCCEEEEEeCC----CC-CCeeEEEEeccCCc-Cceee--eeccC----------CCccCCEEEEE-C
Q 045656 240 ---HLSFPYVFDYHGQIYMMPES----RA-KGEVRLYRAVNFPL-EWKLE--KIIMK----------KPLVDPFMINH-D 297 (802)
Q Consensus 240 ---HLSyP~VF~~dG~iYMiPEs----s~-sg~l~LYra~~FP~-~We~~--~~Ll~----------~~~vDatI~~~-d 297 (802)
.+|.|.|+.++|++||+--. .. ...+.+..+.+ |. .|+.. +.|+. ...+||++|+. |
T Consensus 71 ~~~~~WAP~i~~~~Gkyylyyt~~~~~~~~~~~i~va~s~~-p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~Ddd 149 (307)
T 3qee_A 71 AKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDS-PIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDD 149 (307)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTSCSEEEEEEEESS-TTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEECTT
T ss_pred ccCCccCceEEEECCEEEEEEEeccCCCCCceEEEEEEECC-CCCCCEeCCCCeeEecCccccCCCCcCcccCceEECCC
Confidence 58999999999999999321 11 23455555543 43 68862 22443 13899999997 8
Q ss_pred CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEE
Q 045656 298 GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRT 377 (802)
Q Consensus 298 G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l 377 (802)
|++||++... .+.+..-+..+..|... +..... ......|..+|+.+|++|++.=.+ ....+.+
T Consensus 150 G~~Yl~~g~~---------~i~~~~l~~d~~~~~g~---~~~i~~-~~~~~EgP~i~k~~g~YyL~~s~~---~~~~~~~ 213 (307)
T 3qee_A 150 GQAYLFWGNT---------RPRYAKLKKNMVELDGP---IRAIEG-LPEFTEAIWVHKYQDNYYLSYAMG---FPEKIGY 213 (307)
T ss_dssp SCEEEEECSS---------SCEEEEECTTSSSEEEE---EEECCC-CTTEEEEEEEEECC-CEEEEEEET---TTTEEEE
T ss_pred CCEEEEEeCC---------cEEEEEECCccccccCc---eEEeCC-CCCccCceEEEEECCEEEEEEECC---CCcEEEE
Confidence 9999998541 23333322223344422 111110 123568888999999999976443 4678888
Q ss_pred EEeccCC-ccceEEec-cccCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 378 FKVEILT-KNEYKELE-GRNAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 378 ~~It~Lt-~~~y~E~~-~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
.+.+++. |++++-.. ....|.+ .-|+ ++-+. +|+|.+|+=+.+.
T Consensus 214 ~~s~~~~GP~~~~~il~~~~~~~g-~gH~-~~v~~-~G~~~~~yh~~~~ 259 (307)
T 3qee_A 214 AMGKSIKGPWVYKGILNEVAGNTP-TNHQ-AIIEF-NNKHYFIYHTGAG 259 (307)
T ss_dssp EEESSTTCCCEEEEEEECCCBTCS-CCCC-EEEEE-TTEEEEEEEESCC
T ss_pred EECCCCCCCcEECCEEecCCCccc-CCCc-cEEEe-CCcEEEEEccCcc
Confidence 8888876 77766433 2223332 2344 67776 7889999888775
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=136.16 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=134.9
Q ss_pred CCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--------
Q 045656 167 PVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED-------- 238 (802)
Q Consensus 167 ~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~-------- 238 (802)
+++||++. ..+++||.+++.+++||||++. ..|.+++|.| +.+|+..+.+|+..
T Consensus 13 ~~~nP~~~----------~~~~~DP~i~~~~g~yYl~~t~-------~~i~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~ 74 (314)
T 3cu9_A 13 EMDWSLKG----------DLWAHDPVIAKEGSRWYVFHTG-------SGIQIKTSED-GVHWENMGWVFPSLPDWYKQYV 74 (314)
T ss_dssp GSCCCCEE----------CCBCSSCEEEEETTEEEEEESE-------ETSEEEEESS-SSEEEEEEESCSSCCTTHHHHC
T ss_pred ccCCcccC----------CcCcCCCEEEEECCEEEEEECC-------CCeeEEECcC-CCCccCCCcccCCcchhhhccC
Confidence 45799987 3578999999999999999976 2588999988 99999999988653
Q ss_pred -----CceeeeEEEEeCCEEEEEeCCC----CCCeeEEEEeccC-CcC----ceeeeeccC------CCccCCEEEE-EC
Q 045656 239 -----WHLSFPYVFDYHGQIYMMPESR----AKGEVRLYRAVNF-PLE----WKLEKIIMK------KPLVDPFMIN-HD 297 (802)
Q Consensus 239 -----~HLSyP~VF~~dG~iYMiPEss----~sg~l~LYra~~F-P~~----We~~~~Ll~------~~~vDatI~~-~d 297 (802)
..++.|.|+.++|++||+-... ...++.+..+.+. |.. |+....++. ...+||++|+ .|
T Consensus 75 ~~~~~~~~wAP~v~~~~g~yylyyt~~~~~~~~~~igva~s~~~dP~gp~~~w~~~~~~~~~~~~~~~~~iDp~vf~D~d 154 (314)
T 3cu9_A 75 PEKDEDHLWAPDICFYNGIYYLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQE 154 (314)
T ss_dssp TTCCSCEEEEEEEEEETTEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTT
T ss_pred CCcccCceecCcEEEECCEEEEEEEeccCCCCCceEEEEEeCCCCCCCCCcCcccCCeEecCCCCCCCCccCCCeEEcCC
Confidence 4589999999999999994322 2234555566553 554 987544432 2489999998 58
Q ss_pred CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe-eeC-CCCCCcccCCccEEECCeEEEEccc---CC-CCC
Q 045656 298 GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI-YNG-DKSLGARNGGRPFVYDGNLYRVGQD---CA-ESY 371 (802)
Q Consensus 298 G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI-~~~-~~~~~aR~GG~vF~~dGkLyRp~Qd---C~-~~Y 371 (802)
|++||++... ...+.++.-+..++..... ..++ +.. ........|..+|+.+|++|++.-. |. ...
T Consensus 155 G~~Yl~~g~~-------~~~i~~~~l~~d~~~~~~~-~~~~~~~~~~~~~~~~EgP~i~k~~G~yyL~~s~~~~~~g~~~ 226 (314)
T 3cu9_A 155 GQPWLSFGSF-------WSGIQLIQLDTETMKPAAQ-AELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIES 226 (314)
T ss_dssp SCEEEEECBS-------TTCEEEEECCTTTCSCCTT-CCCEEEECCSSSSCCEEEEEEEEETTEEEEEEEESCCSSGGGC
T ss_pred CCEEEEEecc-------CCcEEEEEECcccCcccCC-CceEEecccCCCCCccCccEEEEECCEEEEEEEcCCcccCCCC
Confidence 9999999652 2356666544444432210 1121 111 1112356788889999999997642 32 345
Q ss_pred CceEEEEEeccCC-ccceE
Q 045656 372 GRRVRTFKVEILT-KNEYK 389 (802)
Q Consensus 372 G~~L~l~~It~Lt-~~~y~ 389 (802)
+.++.+.+.+.++ |++.+
T Consensus 227 ~y~~~~~~s~s~~GP~~~~ 245 (314)
T 3cu9_A 227 TYKIAVGRSKDITGPYVDK 245 (314)
T ss_dssp CCEEEEEEESSTTSCCBCT
T ss_pred cceEEEEEeCCCCCCCCcC
Confidence 6689999998875 65543
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=146.23 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=131.1
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC----------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE---------- 237 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde---------- 237 (802)
+.||||. .++|||.+++.+++||||.+.+... -.|.+.+|.| +.+|+..+.+|+.
T Consensus 8 ~~NPil~-----------g~~~DP~iir~~~~YY~~~st~~~~---pg~~i~~S~D-LvnW~~~g~~l~~~~~~~~~~~~ 72 (542)
T 3zxk_A 8 FTNPVLW-----------EDHPALEVFRVGSVFYYSSSTFAYS---PGAPVLKSYD-LVHWTPVTHSVPRLNFGSNYDLP 72 (542)
T ss_dssp EESCSCC-----------SCCCSCEEEEETTEEEEECCCBTEE---SEEEEEEESS-SSSCEEEEEEESSCCSCGGGGCC
T ss_pred ccCCccC-----------CCCCCCeEEEECCEEEEEEecCccC---CCeEEEEcCC-CCCccccccccccCCcccccccc
Confidence 5799998 4789999999999999998875432 2588999988 9999999999854
Q ss_pred -------CCceeeeEEEEeC--CEEEEEeCCCCCCeeEEEEeccCCc-C------------ceee---------------
Q 045656 238 -------DWHLSFPYVFDYH--GQIYMMPESRAKGEVRLYRAVNFPL-E------------WKLE--------------- 280 (802)
Q Consensus 238 -------~~HLSyP~VF~~d--G~iYMiPEss~sg~l~LYra~~FP~-~------------We~~--------------- 280 (802)
.-.+|+|.|..++ |++||+--.. +.+-+..+.+ |. . |+..
T Consensus 73 ~~~~~~~~~~~WAP~i~~~~~~G~fYly~~~~--~~~~v~~a~~-p~GPf~~g~~l~~~~~ws~~~~~~~~~iDp~~f~D 149 (542)
T 3zxk_A 73 SGTPGAYVKGIWASTLRYRRSNDRFYWYGCVE--GRTYLWTSPG-GNALANNGEVPPSAWNWQHTATIDNCYYDAGLLID 149 (542)
T ss_dssp SSTTTTTTCSBCSCEEEEETTTTEEEEEEEET--TEEEEEEEEC-TTGGGTTTCCCGGGCCCEEEEEESSCCTTCEEEEC
T ss_pred CCcccccCCceECCcEEEECCCCEEEEEEECC--CcEEEEEECC-CCCCccccccccccCccccccccCCCCCCCcEEEc
Confidence 1359999999887 9999983111 3444444432 11 1 4311
Q ss_pred -----------------------------ee-ccC---C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcC-
Q 045656 281 -----------------------------KI-IMK---K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS- 325 (802)
Q Consensus 281 -----------------------------~~-Ll~---~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS- 325 (802)
.+ +++ + -.+.|.|++++|+||||+|.. + ....+++|++
T Consensus 150 dDG~~Yl~~g~~~i~~~eL~~d~~~~~~~~~~i~~~~~g~~~EgP~i~k~~G~YYL~~s~~---~----~~~~v~rs~s~ 222 (542)
T 3zxk_A 150 DDDTMYIAYGNPTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVTRP---A----DAEYVLRSTTG 222 (542)
T ss_dssp TTSCEEEEECSSSEEEEEECTTSSSEEEEEEEEECCTTCCCCEEEEEEEETTEEEEEEEET---T----TEEEEEEESSS
T ss_pred CCCCEEEEEcCCCEEEEEeCCccCcccCCcEEEEeCCCCccccccEEEEECCEEEEEEEeC---C----CCEEEEEEcCC
Confidence 11 221 1 378899999999999999862 1 1467899999
Q ss_pred -CCCCCeeCCCCCeeeCCCC--CCcc-cC-CccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 326 -PFGPWKPHKKNPIYNGDKS--LGAR-NG-GRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 326 -plGPW~~hp~NPI~~~~~~--~~aR-~G-G~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
++|||+.. ||+.+... ..+. +| |.+|.. +|+.|.+.-.+....||.+.|.+++
T Consensus 223 s~~GPy~~~---~vl~~~~~~v~~~G~~~hg~iv~~~~G~w~~~~~~~~~~~gR~~~l~~v~ 281 (542)
T 3zxk_A 223 SPFGPYEAR---TLVSRIQGPLANAGFAHQGGIVDAPDGTWHYVAFMDAYPGGRIPVVAPLR 281 (542)
T ss_dssp STTCCEEEE---EEEESCCCSSSSSCCCEEEEEEECTTSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCCceEC---CEecCCCcceeccCCCCCCEEEECCCCCEEEEEEccCCCCCceEEEEEeE
Confidence 99999975 56654211 1111 22 457777 8999877655556788888888884
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=128.76 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=131.5
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------------CceeeeEEEEeCCEE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------------WHLSFPYVFDYHGQI 253 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------------~HLSyP~VF~~dG~i 253 (802)
.+++||.+++.+++||||++.+.. ...|.+++|.| +.+|+..+.+|+.. ..++.|.|+.++|++
T Consensus 10 ~~~~DP~i~~~~g~yYl~~t~~~~---~~~i~i~~S~D-Lv~W~~~g~~l~~~~~w~~~~~~~~~~~~wAP~v~~~~G~y 85 (293)
T 1uv4_A 10 ELLHDPTMIKEGSSWYALGTGLTE---ERGLRVLKSSD-AKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYYNGKY 85 (293)
T ss_dssp EECSSCEEEEETTEEEEEEECCTT---SSBEEEEEESS-SSSCEEEEEETSSCCGGGGGTSTTCCSBCEEEEEEEETTEE
T ss_pred ccCCCCeEEEECCEEEEEEcCCCC---CCceEEEECCC-CCCccCCCccCCCCCcccccccccCCCceecceEEEECCEE
Confidence 478999999999999999998542 35799999988 99999999998764 369999999999999
Q ss_pred EEEeCCC--C--CCeeEEEEeccCC-cCceeeeecc-C-----CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEE
Q 045656 254 YMMPESR--A--KGEVRLYRAVNFP-LEWKLEKIIM-K-----KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIW 321 (802)
Q Consensus 254 YMiPEss--~--sg~l~LYra~~FP-~~We~~~~Ll-~-----~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~ 321 (802)
||+--.. . ...+.+..+.+.. ..|+....++ . ...+||++|.. ||++||++... ...+.++
T Consensus 86 ylyyt~~~~~~~~~~i~va~s~~p~~Gpw~~~~~~l~~~~~~~~~~iDp~vf~d~dG~~Yl~~g~~-------~~~i~~~ 158 (293)
T 1uv4_A 86 WLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSF-------WSGIKLT 158 (293)
T ss_dssp EEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBS-------TTCEEEE
T ss_pred EEEEEecCCCCCcceEEEEECCCCCCCCCccCCccEecCCCCCCCCCCCCeEECCCCCEEEEEEec-------CCCEEEE
Confidence 9994321 2 2234455554432 3798754333 2 25899999975 89999998542 2456666
Q ss_pred EEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEccc--C-C-CCCCceEEEEEeccCC-ccceE
Q 045656 322 YSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQD--C-A-ESYGRRVRTFKVEILT-KNEYK 389 (802)
Q Consensus 322 ~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Qd--C-~-~~YG~~L~l~~It~Lt-~~~y~ 389 (802)
.-+..+..+...+ ..|...........|..+|+.+|++|++.-. | . ...+..+.+.+.+.++ |++.+
T Consensus 159 ~l~~d~~~~~g~~-~~i~~~~~~~~~~EgP~i~k~~g~yyL~~s~~~~~~g~~~~y~~~~~~s~~~~GP~~~~ 230 (293)
T 1uv4_A 159 KLDKSTMKPTGSL-YSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDK 230 (293)
T ss_dssp EECTTTCSEEEEE-EEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBCT
T ss_pred EECchhCccCCcc-eEEeecCCCCCccCccEEEEECCEEEEEEEeCCCcCCCCCcceEEEEEeCCCCCCCCcc
Confidence 6554443332111 1122211112356788899999999996643 2 2 3466789999998775 65543
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-11 Score=138.56 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=128.1
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEE-eCCEEEEEeCC-
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFD-YHGQIYMMPES- 259 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~-~dG~iYMiPEs- 259 (802)
...+| |.++..+|++||||+...... ....|.+++++|-...|+... .++ .....|.||. +||+.||+-..
T Consensus 70 ~~~WA-P~i~~~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~-~~~--~~~iDp~~f~D~dG~~Yl~~~~~ 145 (533)
T 1yif_A 70 GGVWA-PCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPI-KLN--SSGFDASLFHDTDGKKYLLNMLW 145 (533)
T ss_dssp CBBCS-CEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCE-ECC--CSCSCCEEEECTTSCEEEEEEEE
T ss_pred CCEEC-ceEEEECCEEEEEEEeccCCCCCcccccEEEEEeCCCCCCccccE-EcC--CCcCCCceEECCCCCEEEEEEec
Confidence 45677 999999999999999754311 135789999877545798742 343 3578999996 58899999431
Q ss_pred -C-----CCCeeEEEEeccCCcCceee---eeccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC
Q 045656 260 -R-----AKGEVRLYRAVNFPLEWKLE---KIIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP 326 (802)
Q Consensus 260 -s-----~sg~l~LYra~~FP~~We~~---~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp 326 (802)
+ ..+.|.+.+..+ ..++.. +.+.+. ..+.|.|++++|+||||+|.. +......+.+++|++|
T Consensus 146 ~~~~g~~~~~~i~~~~l~~--d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~g---g~~~~~~v~~~rs~s~ 220 (533)
T 1yif_A 146 DHRIDRHSFGGIVIQEYSD--KEQKLIGKPKVIFEGTDRKLTEAPHLYHIGNYYYLLTAEG---GTRYEHAATIARSANI 220 (533)
T ss_dssp CCCTTSCSEEEEEEEEEET--TTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESST
T ss_pred ccccCCCCCCCEEEEEECC--ccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCC---CCCCCeEEEEEEECCC
Confidence 1 124566666432 333332 224432 489999999999999999863 3334568999999999
Q ss_pred CCCCeeCCCCCeeeCCC---C-CCcccCCccEEE-CCeEEEEcccCC---------------CCCCceEEEEEec
Q 045656 327 FGPWKPHKKNPIYNGDK---S-LGARNGGRPFVY-DGNLYRVGQDCA---------------ESYGRRVRTFKVE 381 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~~---~-~~aR~GG~vF~~-dGkLyRp~QdC~---------------~~YG~~L~l~~It 381 (802)
+|||++++.|||+.... . ..+-.+|.+|.. +|+.|.+..... ..+||.+.+.+|+
T Consensus 221 ~GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~ 295 (533)
T 1yif_A 221 EGPYEVHPDNPILTSWHDPGNPLQKCGHASIVQTHTDEWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLY 295 (533)
T ss_dssp TCCCEECTTCCSEECTTCTTSSSEEEEEEEEEECTTSCEEEEEEEECCBCCSCCCTTTSCCBCTTCSEEEEEEEE
T ss_pred CceeeeCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEcccccccccccccccCCCCCCcEEEEEEEE
Confidence 99999999999997631 1 112223566666 788888765322 2457777777773
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-11 Score=138.72 Aligned_cols=188 Identities=20% Similarity=0.251 Sum_probs=130.3
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCC-
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPES- 259 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEs- 259 (802)
...+| |.++..+|++||||+..+... ....|.+++++|-...|+... .+ +.+...|.||.+ ||+.||+-..
T Consensus 71 ~~~WA-P~i~~~~g~~ylyyt~~~~~~g~~~~~~~~va~s~~~~Gpw~~p~-~~--~~~~iDp~vf~DddG~~Yl~~~~~ 146 (535)
T 2exh_A 71 GGVWA-PHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPI-YL--NSSGFDPSLFHDEDGRKYLVNMYW 146 (535)
T ss_dssp CBBCS-CEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCE-EC--CCSCSCCEEEECTTSCEEEEEEEE
T ss_pred CCEEC-CeEEEECCEEEEEEEeccCCCCCccccceEEEEeCCCCCCccccE-ec--CCCcCCCceEECCCCCEEEEEEec
Confidence 45677 999999999999999764321 135789999877555798743 23 346799999977 8899998431
Q ss_pred -C-----CCCeeEEEEeccCCcCceeee---eccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC
Q 045656 260 -R-----AKGEVRLYRAVNFPLEWKLEK---IIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP 326 (802)
Q Consensus 260 -s-----~sg~l~LYra~~FP~~We~~~---~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp 326 (802)
+ ..+.|.+.+.. +..|+... .+.+. ..+.|.|++++|+||||+|.. +......+.+++|++|
T Consensus 147 ~~~~~~~~~~~i~~~~l~--~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~g---gt~~~~~~~~~rs~s~ 221 (535)
T 2exh_A 147 DHRVDHHPFYGIVLQEYS--VEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEG---GTRYNHAATIARSTSL 221 (535)
T ss_dssp CCCTTSCSEEEEEEEEEE--TTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESST
T ss_pred CCccCCCCCCcEEEEEEC--CccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCC---CCCCCeEEEEEEeCCC
Confidence 1 12456666653 34566532 24432 489999999999999999863 2333557899999999
Q ss_pred CCCCeeCCCCCeeeCCC---C-CCcccCCccEEE-CCeEEEEcccCC---------------CCCCceEEEEEec
Q 045656 327 FGPWKPHKKNPIYNGDK---S-LGARNGGRPFVY-DGNLYRVGQDCA---------------ESYGRRVRTFKVE 381 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~~---~-~~aR~GG~vF~~-dGkLyRp~QdC~---------------~~YG~~L~l~~It 381 (802)
+|||+.++.|||+.... . ..+-.+|.+|.. +|+.|.+...+. ...||.+.+.+|+
T Consensus 222 ~GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~ 296 (535)
T 2exh_A 222 YGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLE 296 (535)
T ss_dssp TCCCEECTTCCSEESTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCCCCTTSCTTTCCCCCTTCEEEEEEEEE
T ss_pred CCCCccCCCcceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEccCcccccccccccCCCCCCCcEEEEEEEE
Confidence 99999999999997631 1 112223566666 789888776432 2456666666664
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=140.21 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=129.2
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCC-
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPES- 259 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEs- 259 (802)
...+| |.++..+|++||||+..+... ....|.|++++|-...|++.. .++ .....|.||.+ ||+.||+-..
T Consensus 70 ~~~WA-P~i~~~~g~~yly~t~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~-~~~--~~~iDp~~f~DddG~~Yl~~~~~ 145 (538)
T 3c2u_A 70 GGIWA-PDLSYADGKFWLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSKPI-LLN--GAGFDASLFHDPSGKKYLVNMYW 145 (538)
T ss_dssp CEECS-CEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTCCCCCCE-EEE--CSCSCCEEEECTTSCEEEEEEEE
T ss_pred CCEEC-CeEEEECCEEEEEEEeccCCCCCcccccEEEEEECCCCCCccccE-ecC--CCcCCCeeEECCCCCEEEEEEec
Confidence 45677 999999999999999764321 135799999877555698753 343 34689999976 7899999431
Q ss_pred ------CCCCeeEEEEeccCCcCceee---eeccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC
Q 045656 260 ------RAKGEVRLYRAVNFPLEWKLE---KIIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP 326 (802)
Q Consensus 260 ------s~sg~l~LYra~~FP~~We~~---~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp 326 (802)
...+.|.+.+.. +..|+.. ..+.+. ..+.|.|++++|+||||+|.. +...+..+.+++|++|
T Consensus 146 ~~~~~~~~~~~i~~~~l~--~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~g---g~~~~~~~~~~rS~s~ 220 (538)
T 3c2u_A 146 DQRVYHHNFYGIALQEYS--VAEEKLIGKPEIIYKGTDIAYTEGPHLYYINDMYYLMTAEG---GTTYQHSETIARSKTI 220 (538)
T ss_dssp CCCTTSCSEEEEEEEEEE--TTTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESST
T ss_pred CCccCCCCCCCEEEEEEC--CccCCCCCCCEEEecCCCCCccccceEEEECCEEEEEEecC---CCCCCeEEEEEEECCC
Confidence 112456666643 3445442 223332 489999999999999999873 3334567999999999
Q ss_pred CCCCeeCCCCCeeeCCC----CCCcccCCccEEE-CCeEEEEcccCC------------------CCCCceEEEEEec
Q 045656 327 FGPWKPHKKNPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQDCA------------------ESYGRRVRTFKVE 381 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~QdC~------------------~~YG~~L~l~~It 381 (802)
+|||+.++.|||+.... ...+-.+|.+|.. +|+.|.+..... ...||.+.+.+|+
T Consensus 221 ~GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~ 298 (538)
T 3c2u_A 221 HGPYEIQPDYPLLSAWKEVHNPLQKCGHASLVETQNGQWYLAHLTGRPLPAPAGFPSREREQHAFCPLGRETAIQKIE 298 (538)
T ss_dssp TCCCEECTTCCSBCCTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCCCCCTTCCTTCHHHHCCCTTCSEEEEEEEE
T ss_pred CCCCccCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEEEccCccccccccccccccCCCCCCCcEEEEEEEE
Confidence 99999999999998631 1112223566665 789888765431 2456777777763
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=138.68 Aligned_cols=153 Identities=20% Similarity=0.340 Sum_probs=108.4
Q ss_pred ceeeCeeeEE-ECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC----------------CCceeeeEEEE
Q 045656 186 NFVADPFFYL-QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE----------------DWHLSFPYVFD 248 (802)
Q Consensus 186 ~F~ADPFll~-~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde----------------~~HLSyP~VF~ 248 (802)
..+| |-+++ ++|+|||||........+..|+|++++|-...|++.+.+|.. ......|.||.
T Consensus 98 ~~WA-P~vi~~~dGkyylyys~~~~~~~~~~IgvatSddp~GPw~~~g~~l~~~~~~~~~dg~~~~~~~~~~~IDp~vf~ 176 (470)
T 2x8s_A 98 TLWA-ADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVAPHTFF 176 (470)
T ss_dssp SCCC-CEEEECTTSCEEEEEEEECSSSCCEEEEEEEESSTTCCCEEEEEEEEECCSSBCTTSSBCCTTTSCCSCCCEEEE
T ss_pred ceEC-CeEEEecCCEEEEEEEeccCCCCccEEEEEEeCCCCCCceeCCeeeccCcccccccccccccccCCCCCCCCEEE
Confidence 4677 99987 589999999986543345689999987754579999866642 23578999986
Q ss_pred -eCCEEEEEeCCCCCCeeEEEEecc---CCcCcee-eeeccC---CCccCCEEE--EECCEEEEEEeCCCCCCCCCCCcE
Q 045656 249 -YHGQIYMMPESRAKGEVRLYRAVN---FPLEWKL-EKIIMK---KPLVDPFMI--NHDGQYWLFGSDHSGFGTTQNGQL 318 (802)
Q Consensus 249 -~dG~iYMiPEss~sg~l~LYra~~---FP~~We~-~~~Ll~---~~~vDatI~--~~dG~wwLF~S~~~~~g~~~n~~L 318 (802)
+||+.||+-.+.. +.|.+.+..+ .|..++. ...+.. ...+.|.|+ +++|+||||+|.. +++...++.+
T Consensus 177 DdDG~~Yl~~g~~~-~gI~~~eL~~d~~~~~~~~~~~~~i~~g~~~~~EGP~i~~~K~~G~YYL~~S~g-~~~~~~~y~v 254 (470)
T 2x8s_A 177 DKDGKLWMVYGSYS-GGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLYLSYG-GLDATGGYNI 254 (470)
T ss_dssp CTTSCEEEEECBST-TCEEEEEBCTTTSSBCTTCTTCEEEECCSSCSEEEEEEEEETTTTEEEEEEEES-BSSTTSBCEE
T ss_pred cCCCCEEEEeeecC-CcEEEEEECCccCcCcCCcccceEecCCCCCceeccEEEEEccCCEEEEEEEeC-CCCCCCCceE
Confidence 4889999975432 4566555432 1222211 122332 247999999 5699999999863 2232235689
Q ss_pred EEEEEcCCCCCCeeCCCCCeeeC
Q 045656 319 EIWYSSSPFGPWKPHKKNPIYNG 341 (802)
Q Consensus 319 ~i~~AdSplGPW~~hp~NPI~~~ 341 (802)
.+++|++|+|||++.+.||++..
T Consensus 255 ~~arS~s~~GP~~~~~g~pl~~~ 277 (470)
T 2x8s_A 255 RVARSKKPDGPYYDAEGNPMLDV 277 (470)
T ss_dssp EEEEESSTTCCCBCTTCCBGGGC
T ss_pred EEEEECCCCCCCCcCCCCccccc
Confidence 99999999999999999998864
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-11 Score=127.77 Aligned_cols=190 Identities=17% Similarity=0.266 Sum_probs=129.5
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------------CceeeeEEEEeCCE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------------WHLSFPYVFDYHGQ 252 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------------~HLSyP~VF~~dG~ 252 (802)
..+++||.+++.+++||||++. ..|.+++|.| +.+|+..+.||+.+ ..+++|.|+.++|+
T Consensus 4 ~~~~~DP~i~~~~g~yyl~~t~-------~~i~~~~S~D-L~~W~~~g~~l~~~~~~~~~~~~~~~~~~wAP~v~~~~g~ 75 (318)
T 1gyh_A 4 QVDVHDPVMTREGDTWYLFSTG-------PGITIYSSKD-RVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGL 75 (318)
T ss_dssp CCCCSSCEEEEETTEEEEEESE-------ETCEEEEESS-SSEEEEEEESSSSCCTTHHHHCTTCCSEEEEEEEEEETTE
T ss_pred CeecCCCEEEEECCEEEEEECC-------CCcEEEECCC-CCCccCCCcccCCCcccccccCCCcCcccccCeEEEECCE
Confidence 3578999999999999999986 2588999988 99999999988653 46899999999999
Q ss_pred EEEEeCCC----CCCeeEEEEeccC-CcC----ceeeeeccC-------CCccCCEEEEE-CCEEEEEEeCCCCCCCCCC
Q 045656 253 IYMMPESR----AKGEVRLYRAVNF-PLE----WKLEKIIMK-------KPLVDPFMINH-DGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 253 iYMiPEss----~sg~l~LYra~~F-P~~----We~~~~Ll~-------~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n 315 (802)
+||+--.. ....+.++.+.+. |.. |+....++. ...+||++|.. ||++||++... .
T Consensus 76 ~ylyyt~~~~~~~~~~igva~s~~~dp~gp~~~w~~~~~v~~~~~~~~~~~~iDp~vf~D~dG~~Yl~~g~~-------~ 148 (318)
T 1gyh_A 76 FYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSF-------W 148 (318)
T ss_dssp EEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEEEEECBS-------T
T ss_pred EEEEEEeccCCCCcceEEEEEeCCCCCCCCCcceecCCcccccCCCCCCCCcccCCeEECCCCCEEEEeecc-------C
Confidence 99994322 2245667777653 554 987554432 24899999984 89999998542 2
Q ss_pred CcEEEEEEcCC------CCCCeeC--CCCCe-eeC-CCCCCcccCCccEEECCeEEEEccc--C-C-CCCCceEEEEEec
Q 045656 316 GQLEIWYSSSP------FGPWKPH--KKNPI-YNG-DKSLGARNGGRPFVYDGNLYRVGQD--C-A-ESYGRRVRTFKVE 381 (802)
Q Consensus 316 ~~L~i~~AdSp------lGPW~~h--p~NPI-~~~-~~~~~aR~GG~vF~~dGkLyRp~Qd--C-~-~~YG~~L~l~~It 381 (802)
..+.++.-+.. ...|+.- +..++ +.+ ........|..+|+.+|++|++.=. | . ...+..+.+.+.+
T Consensus 149 ~~i~~~~l~~d~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~g~yYL~~s~~~~~~g~~~~y~~~~~rS~ 228 (318)
T 1gyh_A 149 GGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDSTYHLVVGRSK 228 (318)
T ss_dssp TCEEEEEBCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEETTEEEEEEEESCCSCGGGCCCEEEEEEES
T ss_pred CCEEEEEeCCccccccceeecceecccCcceeecccCCCCcceeccEEEEECCEEEEEEEeCCCcCCCCCcceEEEEEcC
Confidence 35666653333 1234321 11111 111 0112356788889999999997543 3 2 3456689999998
Q ss_pred cCC-ccceE
Q 045656 382 ILT-KNEYK 389 (802)
Q Consensus 382 ~Lt-~~~y~ 389 (802)
.++ |++.+
T Consensus 229 s~~GP~~~~ 237 (318)
T 1gyh_A 229 QVTGPYLDK 237 (318)
T ss_dssp STTSCCBCT
T ss_pred CCCCCCCcC
Confidence 775 65543
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-11 Score=128.09 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=122.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeee--eecC------CC
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGI--ALDE------DW 239 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gv--vLde------~~ 239 (802)
+.||||. .+ |||.+++.++++|+|.+.... ...|.+.+|.| +..|+..+. ++.. .-
T Consensus 9 ~~NPii~-----------~~-aDP~ii~~~d~yY~~~st~~~---~~g~~i~~S~D-L~~w~~~~~~~~~~~~~~~~~~~ 72 (330)
T 3k1u_A 9 ILNPIII-----------QR-ADPMIYKHNDGYYYFTASVPE---YDRIEVRKAKT-IEGLRNAEPVDVWRRHESGEMSN 72 (330)
T ss_dssp CCSCSBT-----------TC-EEEEEEECTTSCEEEEEECTT---CCEEEEEEESS-TGGGTTSCCEEEEECCSSSTTSE
T ss_pred eECCCCC-----------CC-CCCEEEEECCEEEEEEeccCC---CCCEEEEEcCC-cCCccCCcceeecccCCCCccCC
Confidence 6899987 23 999999999999999988543 34688999887 888875542 2222 13
Q ss_pred ceeeeEEEEeCCEEEEEeC-----C--CCCCeeEEEEec---cCCc--Ccee-------------e--------------
Q 045656 240 HLSFPYVFDYHGQIYMMPE-----S--RAKGEVRLYRAV---NFPL--EWKL-------------E-------------- 280 (802)
Q Consensus 240 HLSyP~VF~~dG~iYMiPE-----s--s~sg~l~LYra~---~FP~--~We~-------------~-------------- 280 (802)
++|+|.|..+||++||+-- . ......+++... .-|+ .|.. +
T Consensus 73 ~~WAP~v~~~~G~yylyys~~~~~~~~~~~~~~~~~~~~~~~~gP~~~~~~~~~~~~~~~~~~~IDp~vf~Ddd~~~~~~ 152 (330)
T 3k1u_A 73 LIWAPEIHFINGAWYIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKTAWESFSLDATIFEHNEKLYYVW 152 (330)
T ss_dssp EEEEEEEEEETTEEEEEEEEESSSCCBTTBCCCEEEEEEECSSSTTSSCCEEEEECCCSSCSCEEEEEEEEETTEEEEEE
T ss_pred CeECCEEEEECCeEEEEEEeccCCCCCCcccceeeeEEEeCCCCCccccccccccccCCCCCCccCceEEEECCccEEEE
Confidence 5999999999999999821 1 111111111111 1111 1110 0
Q ss_pred ---------------------------ee-ccC---------C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEE
Q 045656 281 ---------------------------KI-IMK---------K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWY 322 (802)
Q Consensus 281 ---------------------------~~-Ll~---------~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~ 322 (802)
.+ +.. . -.+.|.|++++|+||||+|.. +...++.+.+++
T Consensus 153 ~~~~~~~~~~~~i~i~~l~~~~~~~g~~~~i~~~~~~~e~~~~~~~EGp~i~k~~G~YYL~ys~~---~~~~~y~~~~~~ 229 (330)
T 3k1u_A 153 AQQDINIKGHSNIYIAEMENPWTLKTKPVMLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSAS---ATDVNYCIGMLT 229 (330)
T ss_dssp EECCTTSSSSBEEEEEEEEETTEECSCCEEEECSCSGGGCSSSCBEEEEEEEEETTEEEEEEEES---CSSTTCEEEEEE
T ss_pred eecCCCcCCCceEEEEECCCCccccCCcEEecCCCccccccCCceeeCCEEEEECCEEEEEEEeC---CCCCCceEEEEE
Confidence 00 100 0 148999999999999999864 333467899999
Q ss_pred EcCCCCCCeeC----CCCCeeeCCCCC-Cccc-CCccEEE-CC-eEEEEcccCC---------CCCCceEEEEEec
Q 045656 323 SSSPFGPWKPH----KKNPIYNGDKSL-GARN-GGRPFVY-DG-NLYRVGQDCA---------ESYGRRVRTFKVE 381 (802)
Q Consensus 323 AdSplGPW~~h----p~NPI~~~~~~~-~aR~-GG~vF~~-dG-kLyRp~QdC~---------~~YG~~L~l~~It 381 (802)
|+++.||+.+. ..+||+...... ...+ ++.+|.. || +.|++.+.-. ..+||.+.|.+|+
T Consensus 230 s~~~~gP~~~~~~~~~~~pi~~~~~~~~~~g~GH~s~v~~~dG~~~~~~yH~~~~~~~~~~~~~~~~R~~~l~~v~ 305 (330)
T 3k1u_A 230 AEENSNLLDKNSWTKSQTPVFKTSMENHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPNRHTRAQIIN 305 (330)
T ss_dssp EETTSCTTSGGGCEECSSCSBCCBTTTTBEEEEEEEEEECTTSCSEEEEEEEESCSCCCSCGGGCCCCEEEEEECE
T ss_pred ECCCCCCCCCccccccCCCEEEcCCCCceeeCCcCeEEECCCCCEEEEEEccccCCcccCCCCCCCCeEEEEEEEE
Confidence 99999996432 257887653111 1123 3556655 55 5677665321 1367888888884
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=128.73 Aligned_cols=189 Identities=19% Similarity=0.229 Sum_probs=128.6
Q ss_pred CceeeCeeeEEECCEEEEEEEeeecc-CCCceEEEEE--EeCC-CCCceEeeeeecC-CCceeeeEEEEeCCEEEEEeCC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSI-TMQGDIGVAK--SVDK-GATWQQLGIALDE-DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va~--S~D~-g~tw~~~gvvLde-~~HLSyP~VF~~dG~iYMiPEs 259 (802)
...+| |-++..+|+|||||...... .....|.|++ +.|. ...|++++.++.. ......|.||.+||+.||+=-+
T Consensus 74 ~~~WA-P~v~~~~Gkyylyys~~~~~~~~~~~i~va~~~s~dp~~Gpw~~~g~~~~~~~~~~IDp~vf~ddG~~Yl~~g~ 152 (468)
T 3akh_A 74 AHIWA-PEIHFIDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFVVNGVRHLAWAQ 152 (468)
T ss_dssp EEEEE-EEEEEETTEEEEEEEEECSSCTTCCEEEEEEECCSCTTTSCCEEEEECCCSSCSCEEEEEEEEETTEEEEEEEE
T ss_pred CCEec-ceEEEECCEEEEEEEeECCCCCCceeEEEEEccCCCCCCCCCcccceeecCCCCCcCcCeEEEECCEEEEEEEc
Confidence 35788 99999999999999986532 1234688876 5554 3589998876542 3457899999999999999321
Q ss_pred -----CCCCeeEEEEeccCCcCceee--ee-ccC----------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEE
Q 045656 260 -----RAKGEVRLYRAVNFPLEWKLE--KI-IMK----------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIW 321 (802)
Q Consensus 260 -----s~sg~l~LYra~~FP~~We~~--~~-Ll~----------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~ 321 (802)
.....|.+-+..+ .|+.. .+ +.. ...++|.|++++|+||||+|.. +...++.+.++
T Consensus 153 ~~~~~~~~~~i~i~~l~~---~~~~~g~~~~i~~~~~~we~~g~~~~EGP~i~k~~G~YYL~ys~~---g~~~~y~v~~a 226 (468)
T 3akh_A 153 RNPAEDNNTSLFIAKMAN---PWTISGTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSAS---ATDANYCLGML 226 (468)
T ss_dssp CCTTSSSSBEEEEEEEEE---TTEEEEEEEEEECCCSGGGCSSSCBEEEEEEEEETTEEEEEEEES---CSSTTCEEEEE
T ss_pred cCCCCCCCCcEEEEEeCC---CceecCccEEecCCCcccccCCCccccCCEEEEECCEEEEEEEeC---CCCCCceEEEE
Confidence 2235566655533 35542 22 221 1379999999999999999873 33456689999
Q ss_pred EEc---CCCCC--CeeCCCCCeeeCCCC-CCcccC-CccEEE-CCe-EEEEcccCCC---------CCCceEEEEEec
Q 045656 322 YSS---SPFGP--WKPHKKNPIYNGDKS-LGARNG-GRPFVY-DGN-LYRVGQDCAE---------SYGRRVRTFKVE 381 (802)
Q Consensus 322 ~Ad---SplGP--W~~hp~NPI~~~~~~-~~aR~G-G~vF~~-dGk-LyRp~QdC~~---------~YG~~L~l~~It 381 (802)
+|+ +++|| |++. .|||+..... ....+| +.+|.. +|+ .|++...... ..||.+.+.+++
T Consensus 227 ~s~~~~~~~gP~~w~~~-~~pvl~~~~~~~~~g~GH~svv~~~~G~~~~~vyH~~~~~~~~G~~~~~~~R~~~l~~v~ 303 (468)
T 3akh_A 227 SASASADLLNAASWTKS-SQPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYKDISGDPLNDPNRRTRLQKVY 303 (468)
T ss_dssp EEETTSCTTSGGGCEEC-SSCSBCCBTTTTBEEEEEEEEEECTTSCSEEEEEEEESSSSCCSSGGGCCCCEEEEEECE
T ss_pred EECCCCCCCCcHHhccC-CceEEEeCCCCceEeCCCceEEECCCCCEEEEEEecccCCCCCCCcccCCCcEEEEEEEE
Confidence 998 79997 9987 6899975321 111233 455654 785 8887664321 247888888885
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-11 Score=132.47 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=147.7
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEE-ECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeee--cC------C
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYL-QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIAL--DE------D 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~-~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvL--de------~ 238 (802)
+.|||+. .+ |||++++ .+|+|||+.+.. ....|.+++|.| +.+|+..+.++ .. .
T Consensus 11 ~~NPi~~-----------~~-~DP~iir~~dg~YY~~~T~~----~~~~i~i~~S~D-Lv~W~~~~~~~~w~~~~~~~~~ 73 (468)
T 3akh_A 11 FTNPLAE-----------KR-ADPHIFKHTDGYYYFTATVP----EYDRIVLRRATT-LQGLATAPETTIWTKHASGVMG 73 (468)
T ss_dssp CEECSBT-----------TC-EEEEEEECTTSCEEEEEECT----TCCEEEEEEESS-TGGGGGCCCEEEEECCSSSTTC
T ss_pred ccCCCCC-----------CC-CCCEEEEecCCEEEEEEEeC----CCCCEEEEECCC-ccccccCCCcceecCCCCCCCC
Confidence 6799987 13 9999998 589999999872 235799999987 89998877433 22 2
Q ss_pred CceeeeEEEEeCCEEEEEeCCC---CCCeeEEEEe---ccCC--cCceeeeecc---CCCccCCEEEEECCEEEEEEeCC
Q 045656 239 WHLSFPYVFDYHGQIYMMPESR---AKGEVRLYRA---VNFP--LEWKLEKIIM---KKPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 239 ~HLSyP~VF~~dG~iYMiPEss---~sg~l~LYra---~~FP--~~We~~~~Ll---~~~~vDatI~~~dG~wwLF~S~~ 307 (802)
.++|+|.|+.+||++||+--.. ......+|-+ .+-| ..|+....++ +...+||++|+.||++||++...
T Consensus 74 ~~~WAP~v~~~~Gkyylyys~~~~~~~~~~~i~va~~~s~dp~~Gpw~~~g~~~~~~~~~~IDp~vf~ddG~~Yl~~g~~ 153 (468)
T 3akh_A 74 AHIWAPEIHFIDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFVVNGVRHLAWAQR 153 (468)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSCTTCCEEEEEEECCSCTTTSCCEEEEECCCSSCSCEEEEEEEEETTEEEEEEEEC
T ss_pred CCEecceEEEECCEEEEEEEeECCCCCCceeEEEEEccCCCCCCCCCcccceeecCCCCCcCcCeEEEECCEEEEEEEcc
Confidence 5799999999999999994221 1124555553 4455 4698755443 24589999999999999999753
Q ss_pred CCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC-------CCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 308 SGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK-------SLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 308 ~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~-------~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.. +...+..+.+..-++ +|+.. ..|+....+ ......|..+|+.+|++|+..-.+....+..+.+.+.
T Consensus 154 ~~-~~~~~~~i~i~~l~~---~~~~~-g~~~~i~~~~~~we~~g~~~~EGP~i~k~~G~YYL~ys~~g~~~~y~v~~a~s 228 (468)
T 3akh_A 154 NP-AEDNNTSLFIAKMAN---PWTIS-GTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSASATDANYCLGMLSA 228 (468)
T ss_dssp CT-TSSSSBEEEEEEEEE---TTEEE-EEEEEEECCCSGGGCSSSCBEEEEEEEEETTEEEEEEEESCSSTTCEEEEEEE
T ss_pred CC-CCCCCCcEEEEEeCC---Cceec-CccEEecCCCcccccCCCccccCCEEEEECCEEEEEEEeCCCCCCceEEEEEE
Confidence 11 111123444444332 45432 223222111 0124577788999999999776554455667888887
Q ss_pred c---cC-CccceEEeccccCCCC------CCccccccccCCCCC-eEEEEeCcccC
Q 045656 381 E---IL-TKNEYKELEGRNAWNG------ARYHHLDAQQLSSGE-WIAVMDGDRAL 425 (802)
Q Consensus 381 t---~L-t~~~y~E~~~~~~w~~------~~~Hhld~~~l~~g~-~i~vvDG~r~~ 425 (802)
+ .+ .|..|+... .+-... .+.-|-++-+-++|+ |.+|+=+...+
T Consensus 229 ~~~~~~~gP~~w~~~~-~pvl~~~~~~~~~g~GH~svv~~~~G~~~~~vyH~~~~~ 283 (468)
T 3akh_A 229 SASADLLNAASWTKSS-QPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYK 283 (468)
T ss_dssp ETTSCTTSGGGCEECS-SCSBCCBTTTTBEEEEEEEEEECTTSCSEEEEEEEESSS
T ss_pred CCCCCCCCcHHhccCC-ceEEEeCCCCceEeCCCceEEECCCCCEEEEEEecccCC
Confidence 6 33 443454331 111111 133344676667784 88888766554
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-10 Score=129.92 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=135.9
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC-------CceeeeEEEEe--CCEEEEEe
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED-------WHLSFPYVFDY--HGQIYMMP 257 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~-------~HLSyP~VF~~--dG~iYMiP 257 (802)
..+||++++.+++||||.|..........|.+++|.| +.+|++.+.+|... ..+|.|.|+.+ +|++||+-
T Consensus 57 ~a~DP~Ii~~~g~YY~~~T~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~~WAP~v~~~~~~Gkyymy~ 135 (526)
T 3vsf_A 57 HAHGGGMLKHGDYYYWYGEYRDDSNLFLGVSCYRSKD-LVNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFVMWM 135 (526)
T ss_dssp CCEEEEEEEETTEEEEEEEEECTTSSEEEEEEEEESS-SSSCEEEEEEEETTSSGGGSSCEEEEEEEEECTTTCCEEEEE
T ss_pred eccCCeEEEECCEEEEEEecCCCCCCcCcEEEEECCC-CCCcCCCCccCCCCCCcCcccCceECCEEEEECCCCEEEEEE
Confidence 5699999999999999999865444446799999988 99999999998643 35899999886 89999993
Q ss_pred C---C--CCCCeeEEEEeccCCcCceeeee---cc----------CCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcE
Q 045656 258 E---S--RAKGEVRLYRAVNFPLEWKLEKI---IM----------KKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQL 318 (802)
Q Consensus 258 E---s--s~sg~l~LYra~~FP~~We~~~~---Ll----------~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L 318 (802)
- . ....++-+..+.+.-..|+.... +. ....+||++|.. ||++||+++.. .+..+
T Consensus 136 ~~~~~~~~~~~~igvats~~p~Gpw~~~g~~~p~~~~g~~~~~~~~~~~iDp~vf~D~dG~~Yl~~~~~------~~~~i 209 (526)
T 3vsf_A 136 HWENGINYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTDGKGYFISAAN------ENMDL 209 (526)
T ss_dssp EEECSSCSCCCEEEEEEESSSSSCCEEEEEECSSCTTCCEETTEESCCCCSEEEEECTTSCEEEEEEET------TTTEE
T ss_pred EeeCCCCCCcceEEEEEcCCCCCCCEeccccccccccccccCCCCCcccccccEEECCCCCEEEEEEec------CCCce
Confidence 2 1 22345556555543236875432 22 135799999986 89999999753 23467
Q ss_pred EEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEec
Q 045656 319 EIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKELE 392 (802)
Q Consensus 319 ~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~~ 392 (802)
.++.-++.+..+... +...-. ....+|..+|+.+|++|++.=.|.......+.+.+.+.+. |++.....
T Consensus 210 ~i~~l~~d~~~~~~~---~~~~~~--g~~~EgP~i~k~~G~YYL~~S~~tg~~~~~~~~a~S~s~~GPw~~~~~~ 279 (526)
T 3vsf_A 210 HLYELTPDYKNIASL---KAKLFV--GQQREAPCLIKRNGYYYLITSGCTGWNPNQAKYAYSKDLASGWSQLYNL 279 (526)
T ss_dssp EEEEECTTSSSEEEE---EEEEST--TSCCEEEEEEESSSCEEEEEECCCTTSCCCEEECEESCSSSCCCCCEEE
T ss_pred EEEEcCCCcccccCc---eEEeCC--CCCcCCeEEEEECCEEEEEEcCCCCcCCCceEEEEeCCCCCCceeCCcc
Confidence 777655554444332 111111 1367899999999999999866553334588889988875 76655544
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.6e-10 Score=125.06 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=123.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC----------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE---------- 237 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde---------- 237 (802)
..||+++ ...+|||.+++.+++||||.+. +.+++|.| +.+|+..+.+|+.
T Consensus 26 ~~NPi~~----------~~~~~DPsii~~~g~YYl~~T~---------~~i~~S~D-LvnW~~~g~~l~~~~~~~~~~~~ 85 (470)
T 2x8s_A 26 AQKPIFK----------EVSVHDPSIIETNGTFYVFGSH---------LASAKSND-LMQWQQLTTSVSNDNPLIPNVYE 85 (470)
T ss_dssp --CCCCB----------CCCCSSCEEEEETTEEEEECST---------TCEEEESS-SSBCEEEECSCSTTCTTSTTHHH
T ss_pred cCCCccC----------CCcCCCCEEEEECCEEEEEECc---------CceEECCC-cccceeccccccccccccccccc
Confidence 3699987 2468999999999999998653 34688877 8999999977752
Q ss_pred ----------CCceeeeEEEE-eCCEEEEEeCC----CCCCeeEEEEeccCCc-Cceeeee-ccC---------------
Q 045656 238 ----------DWHLSFPYVFD-YHGQIYMMPES----RAKGEVRLYRAVNFPL-EWKLEKI-IMK--------------- 285 (802)
Q Consensus 238 ----------~~HLSyP~VF~-~dG~iYMiPEs----s~sg~l~LYra~~FP~-~We~~~~-Ll~--------------- 285 (802)
..++|+|.|++ +||++||+--. .....+-+..+.+ |. .|+.... +..
T Consensus 86 ~l~~~~~w~~~~~~WAP~vi~~~dGkyylyys~~~~~~~~~~IgvatSdd-p~GPw~~~g~~l~~~~~~~~~dg~~~~~~ 164 (470)
T 2x8s_A 86 ELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADN-IEGPYKNKGIFLKSGMEGTSSDGTPYDAT 164 (470)
T ss_dssp HTHHHHHHHTCSSCCCCEEEECTTSCEEEEEEEECSSSCCEEEEEEEESS-TTCCCEEEEEEEEECCSSBCTTSSBCCTT
T ss_pred cccccccccCCCceECCeEEEecCCEEEEEEEeccCCCCccEEEEEEeCC-CCCCceeCCeeeccCcccccccccccccc
Confidence 13699999988 58999998322 1223455666644 55 5987633 322
Q ss_pred --CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCC---CCeeCCCCCeeeCCCCCCcccCCccE--EEC
Q 045656 286 --KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG---PWKPHKKNPIYNGDKSLGARNGGRPF--VYD 357 (802)
Q Consensus 286 --~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplG---PW~~hp~NPI~~~~~~~~aR~GG~vF--~~d 357 (802)
...+||++|.. ||++||++... ...+.+..-+...+ +++... .++..+. .....|..+| +.+
T Consensus 165 ~~~~~IDp~vf~DdDG~~Yl~~g~~-------~~gI~~~eL~~d~~~~~~~~~~~-~~i~~g~--~~~~EGP~i~~~K~~ 234 (470)
T 2x8s_A 165 KHPNVVAPHTFFDKDGKLWMVYGSY-------SGGIFILEMNPKTGFPLPGQGYG-KKLLGGN--HSRIEGPYVLYNPDT 234 (470)
T ss_dssp TSCCSCCCEEEECTTSCEEEEECBS-------TTCEEEEEBCTTTSSBCTTCTTC-EEEECCS--SCSEEEEEEEEETTT
T ss_pred cCCCCCCCCEEEcCCCCEEEEeeec-------CCcEEEEEECCccCcCcCCcccc-eEecCCC--CCceeccEEEEEccC
Confidence 24899999985 89999999642 23455555444433 121111 1232221 2346778888 459
Q ss_pred CeEEEEccc--CCCCCCceEEEEEeccCC-ccc
Q 045656 358 GNLYRVGQD--CAESYGRRVRTFKVEILT-KNE 387 (802)
Q Consensus 358 GkLyRp~Qd--C~~~YG~~L~l~~It~Lt-~~~ 387 (802)
|++|++.=. |...-+..+.+.+.+.+. |++
T Consensus 235 G~YYL~~S~g~~~~~~~y~v~~arS~s~~GP~~ 267 (470)
T 2x8s_A 235 QYYYLYLSYGGLDATGGYNIRVARSKKPDGPYY 267 (470)
T ss_dssp TEEEEEEEESBSSTTSBCEEEEEEESSTTCCCB
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEECCCCCCCC
Confidence 999997643 221235688899998775 654
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-09 Score=115.00 Aligned_cols=183 Identities=12% Similarity=0.222 Sum_probs=124.1
Q ss_pred CCeeccccc--------cCCCCCCceeeCeeeEEECCEEEEEEEeeeccC-----CCceEEEEEEeCCCCCceE-eeeee
Q 045656 170 NPIMTCASV--------SSAGFPSNFVADPFFYLQGNDLYLFYETKNSIT-----MQGDIGVAKSVDKGATWQQ-LGIAL 235 (802)
Q Consensus 170 NPVlt~~~v--------~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~-----~~G~I~va~S~D~g~tw~~-~gvvL 235 (802)
||||+...- ++.......+-+|-++..+|++||||+...... ....|++|+|.| +.+|+. .++||
T Consensus 24 nPIl~p~~~~~~~~~~~~~~~~D~~gv~sgsai~~dG~y~lfYtg~~~~~~~~~~~~~~ig~A~S~D-gi~w~~~~~pvl 102 (356)
T 3taw_A 24 NPVIKPLPTKFYCPMREDSVAWEESDTFNPAATIYDGKIVVMYRAEDNSAQGIGSRTSRLGYATSTD-GIHFERDTKPAF 102 (356)
T ss_dssp CCSBCCCCCEEEETTTTEEEETTSSEEEEEEEEEETTEEEEEEEEECSSSCSTTSSCEEECCEEESS-SSSCEECSSCSB
T ss_pred CCeEccCCccccCcccccCCccccCCeECcEEEEECCEEEEEEEEEcCCCccCCCceeEEEEEEeCC-CccceECCccee
Confidence 888886542 111122345566999999999999999865432 345799999977 889998 45677
Q ss_pred cC----------CCceeeeEEEEe-CCEEEEEeC--CCCCCeeEEEEeccCCcCceeeeeccCC---------CccC---
Q 045656 236 DE----------DWHLSFPYVFDY-HGQIYMMPE--SRAKGEVRLYRAVNFPLEWKLEKIIMKK---------PLVD--- 290 (802)
Q Consensus 236 de----------~~HLSyP~VF~~-dG~iYMiPE--ss~sg~l~LYra~~FP~~We~~~~Ll~~---------~~vD--- 290 (802)
.. ..|...|.|+++ ||.+||+-- ......+.|++..++ ..|+....++.. ...|
T Consensus 103 ~p~~~~~~~~~~~~~~~DP~v~~~~dg~y~m~yt~~~~~~~~i~la~S~Dl-~~W~~~g~i~~~~~~~~~~~~~~k~~~l 181 (356)
T 3taw_A 103 YPAKDNQAENECPGGTEDPRIAMTEDGTYVLLYTQWNRKVPRLAVATSKDL-KHWTKFGPAFEKAYNGKFKDEATKSASL 181 (356)
T ss_dssp CCCSSTTHHHHTTTEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEEESSS-SSCEEEEETTSSHHHHTTTTSCCCCEEE
T ss_pred cCCCccccccccCCceECCEEEEECCCEEEEEEEEeCCCCceEEEEECCCC-CCceEeeeEcCCccccccccccCCccEE
Confidence 32 258889999998 889999843 233578899999887 689987665432 1223
Q ss_pred --------CEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC-----CCCCeeeCCCC-C-Cccc-CCc-c
Q 045656 291 --------PFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH-----KKNPIYNGDKS-L-GARN-GGR-P 353 (802)
Q Consensus 291 --------atI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h-----p~NPI~~~~~~-~-~aR~-GG~-v 353 (802)
|+|.+++|+|||++.. ..+.+++|+++. +|+++ ..+||+...+. + .... +|. +
T Consensus 182 ~p~~~~g~p~v~k~~G~y~m~~g~---------~~I~la~S~Dl~-~W~~~~~~~~~~~~~l~~~~~~wd~~~ig~gp~p 251 (356)
T 3taw_A 182 VTTLKGDKQVIAKVNGKYFMYWGE---------KNVYAATSDNLI-DWDPLLDENGELLKLFSPRSGYFDSQLTECGPPA 251 (356)
T ss_dssp EEEEETTEEEECCBTTBEEEEECS---------SSBEEEEESSSS-SCEECBCTTSSBCCSBCCCTTSSCSSEEEECSCE
T ss_pred eecccCCCceEEEECCEEEEEeCC---------ceeeEEECCCcc-cCeeccccCCCcceEecCCCChheeccccCCCcc
Confidence 3455789999999842 368899999887 99986 45677764211 1 1222 344 4
Q ss_pred EEECCeEEEEc
Q 045656 354 FVYDGNLYRVG 364 (802)
Q Consensus 354 F~~dGkLyRp~ 364 (802)
++.++.++++.
T Consensus 252 I~t~~Gwll~Y 262 (356)
T 3taw_A 252 ILTKDGIVLLY 262 (356)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCcEEEEE
Confidence 77655555544
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=124.58 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred ceeeCeeeEEE--CCEEEEEEEeeecc-CCCceEEEEEEeCCCCCceEeeeeecC-----------CCceeeeEEEEe-C
Q 045656 186 NFVADPFFYLQ--GNDLYLFYETKNSI-TMQGDIGVAKSVDKGATWQQLGIALDE-----------DWHLSFPYVFDY-H 250 (802)
Q Consensus 186 ~F~ADPFll~~--~g~~ylF~E~~~~~-~~~G~I~va~S~D~g~tw~~~gvvLde-----------~~HLSyP~VF~~-d 250 (802)
..+| |-++.. +|+|||||...+.. .....|+|+++++....|++.+..... .+....|.||.+ |
T Consensus 116 ~~WA-P~v~~~~~~Gkyymy~~~~~~~~~~~~~igvats~~p~Gpw~~~g~~~p~~~~g~~~~~~~~~~~iDp~vf~D~d 194 (526)
T 3vsf_A 116 NIER-PKVMYNASTGEFVMWMHWENGINYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTD 194 (526)
T ss_dssp EEEE-EEEEECTTTCCEEEEEEEECSSCSCCCEEEEEEESSSSSCCEEEEEECSSCTTCCEETTEESCCCCSEEEEECTT
T ss_pred ceEC-CEEEEECCCCEEEEEEEeeCCCCCCcceEEEEEcCCCCCCCEeccccccccccccccCCCCCcccccccEEECCC
Confidence 4788 999985 89999999865221 235789999988866689987743221 156789999965 8
Q ss_pred CEEEEEeCCCCCCeeEEEEeccCCcCceeeee-ccC-CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCC
Q 045656 251 GQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI-IMK-KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328 (802)
Q Consensus 251 G~iYMiPEss~sg~l~LYra~~FP~~We~~~~-Ll~-~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplG 328 (802)
|+.||+=.+...+.+.+.+..+--..+.-+.. +.+ ...|+|.|++++|+||||+|.. .+. ....+.+++|++++|
T Consensus 195 G~~Yl~~~~~~~~~i~i~~l~~d~~~~~~~~~~~~~g~~~EgP~i~k~~G~YYL~~S~~--tg~-~~~~~~~a~S~s~~G 271 (526)
T 3vsf_A 195 GKGYFISAANENMDLHLYELTPDYKNIASLKAKLFVGQQREAPCLIKRNGYYYLITSGC--TGW-NPNQAKYAYSKDLAS 271 (526)
T ss_dssp SCEEEEEEETTTTEEEEEEECTTSSSEEEEEEEESTTSCCEEEEEEESSSCEEEEEECC--CTT-SCCCEEECEESCSSS
T ss_pred CCEEEEEEecCCCceEEEEcCCCcccccCceEEeCCCCCcCCeEEEEECCEEEEEEcCC--CCc-CCCceEEEEeCCCCC
Confidence 99999976655678888887543333333222 444 3589999999999999999853 222 234789999999999
Q ss_pred CCeeCC
Q 045656 329 PWKPHK 334 (802)
Q Consensus 329 PW~~hp 334 (802)
||++++
T Consensus 272 Pw~~~~ 277 (526)
T 3vsf_A 272 GWSQLY 277 (526)
T ss_dssp CCCCCE
T ss_pred CceeCC
Confidence 999865
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-09 Score=113.37 Aligned_cols=202 Identities=12% Similarity=0.123 Sum_probs=134.8
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe-eeee--c-----CCCc
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL-GIAL--D-----EDWH 240 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~-gvvL--d-----e~~H 240 (802)
.||||+..+. .. ..-+-+|-++..+|++||||..... .+.-.|++|+|.| +.+|+.. ++|| + +..+
T Consensus 41 ~~PiL~p~~~---~~-~~gv~n~~~i~~~g~~~lfY~~~~~-~~~~~~~~A~S~D-gi~w~~~~~pvl~p~~~~~~~~~g 114 (338)
T 1vkd_A 41 KNPIIGRNPV---PK-GARVFNSAVVPYNGEFVGVFRIDHK-NTRPFLHFGRSKD-GINWEIEPEEIQWVDVNGEPFQPS 114 (338)
T ss_dssp TCCSBCBSCS---TT-EEEEEEEEEEEETTEEEEEEEEEET-TSCEEEEEEEESS-SSSCEECSSCCCEECTTSCBCCCS
T ss_pred CCceECCCCC---cc-cCeEEccEEEEECCEEEEEEEEECC-CCcEEEEEEEeCC-CCccEECCCCEEeCCCCCccccCC
Confidence 7899885431 12 2233468999999999999987654 3567899999987 7799986 3555 2 2378
Q ss_pred ee-eeEEEEeCCEEEEEeCC-CCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE--ECCEEEEEEeCCCCCCCCCCC
Q 045656 241 LS-FPYVFDYHGQIYMMPES-RAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN--HDGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 241 LS-yP~VF~~dG~iYMiPEs-s~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~--~dG~wwLF~S~~~~~g~~~n~ 316 (802)
+. .|.|++++|++||+--+ .....+.+++..++ ..|+....+......|+.++. .+|+|+|+++.... +.....
T Consensus 115 ~~yDP~v~~~~d~yym~yt~~~~~~~i~la~S~Dl-~~W~~~~~i~~~~~rd~~~fp~~i~Gky~m~~~~q~~-~~~~~~ 192 (338)
T 1vkd_A 115 YAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDF-KTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDN-GHTPFG 192 (338)
T ss_dssp SEEEEEEEEETTEEEEEEEEESSSEEEEEEEESSS-SSEEEECCSSSSSEEEEEECSSCBTTBEEEEEEECCS-SSCSCC
T ss_pred EEeCcEEEEECCEEEEEEEEcCCcceEEEEEECCC-CeEEECCccCCCcCCceEEEEEEECCEEEEEEEecCC-CCCCCc
Confidence 95 99999999999999543 23467889998887 689886655443456788886 49999999965321 112345
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeCCC--CC---CcccCCccEEECCeEEEEcccCC-----CCCCceEEEEEec
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNGDK--SL---GARNGGRPFVYDGNLYRVGQDCA-----ESYGRRVRTFKVE 381 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~~~--~~---~aR~GG~vF~~dGkLyRp~QdC~-----~~YG~~L~l~~It 381 (802)
.+.+++|+++.. |+.+. +|+.... .+ ....++.+|..++..+++.--.. ..|.-++.+...+
T Consensus 193 ~I~~a~S~Dl~~-W~~~~--~l~~~~~~~~wE~~~ig~gp~~i~~~~gwll~y~G~~~~~~~~~Y~~G~alld~~ 264 (338)
T 1vkd_A 193 DIFLSESPDMIH-WGNHR--FVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLD 264 (338)
T ss_dssp CEEEEEESSSSC-BEEEE--EEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred EEEEEEcCCccc-CCcCc--eEEcCCCCCCcccCccccCCCcEEeCCcEEEEEecccCCCCCcEEEEEEEEEcCC
Confidence 788999998876 98653 5543211 01 11235688887655555433221 2366566665544
|
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=119.76 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=101.9
Q ss_pred eeeCeeeEE--ECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC--CCceeeeEEEEe-CCEEEEEeCCCC
Q 045656 187 FVADPFFYL--QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE--DWHLSFPYVFDY-HGQIYMMPESRA 261 (802)
Q Consensus 187 F~ADPFll~--~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde--~~HLSyP~VF~~-dG~iYMiPEss~ 261 (802)
.+| |-++. ++|++||||..-+.......|+||++++....|++.+.++.. +++...|.||.+ ||+.||+=.+
T Consensus 85 ~WA-P~V~y~~~dGkYYLyyt~~~~~~~~~~igVAtSdsP~GPwt~~gpl~~~g~~~~~IDPsvF~DdDGk~YL~~g~-- 161 (441)
T 3nqh_A 85 GER-VKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG-- 161 (441)
T ss_dssp EEE-EEEEECTTTCCEEEEEEEEETTSCSCEEEEEEESSTTSCCEEEEECEETTEECCCCSEEEEECTTSCEEEEEGG--
T ss_pred cCC-ceeEEEccCCEEEEEEEeCCCCCCcceEEEEEeCCCCCCceEcceeecCCCcccccCceEEEeCCCCEEEEeCC--
Confidence 566 99987 699999999986654445789999987755689998876533 456689999987 7899999643
Q ss_pred CCeeEEEEeccCCcCceeeee-ccCC-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 262 KGEVRLYRAVNFPLEWKLEKI-IMKK-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 262 sg~l~LYra~~FP~~We~~~~-Ll~~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
..|++..+--..++-+.. +... ..++|.|++++|+||||+|... +...+ ...+++|++++|||+..
T Consensus 162 ---~~I~eLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~~S~~~--g~~~~-~~~~arS~s~~GPw~~~ 229 (441)
T 3nqh_A 162 ---GIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLT--SWEKN-DNFYFTAPSVKGPWTRQ 229 (441)
T ss_dssp ---GEEEEECTTSSSEEEEEESCSTTCCCEEEEEEEETTEEEEEEECSC--TTSCC-CCEEEEESSTTCCCEEE
T ss_pred ---CcEEEeCCccccccCceEEeCCCCceECcEEEEECCEEEEEEeCCC--CcCCC-ceEEEEeCCCCCCceEC
Confidence 246776543345544433 3332 4899999999999999999742 22222 46899999999999975
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.5e-09 Score=116.29 Aligned_cols=147 Identities=18% Similarity=0.274 Sum_probs=102.4
Q ss_pred eeeEE-ECCEEEEEEEeeecc-CCCceEEEEEE----eCCC---CCceEeeeeecCC---------------------Cc
Q 045656 191 PFFYL-QGNDLYLFYETKNSI-TMQGDIGVAKS----VDKG---ATWQQLGIALDED---------------------WH 240 (802)
Q Consensus 191 PFll~-~~g~~ylF~E~~~~~-~~~G~I~va~S----~D~g---~tw~~~gvvLde~---------------------~H 240 (802)
+-.+. .+|+++|||+..... .....|+.+.+ .+++ ..|+...++++.+ +|
T Consensus 139 GSAi~~~dG~i~LfYTg~~~~~~~~q~I~~a~~~l~~~~dgv~~~~~~~~~~l~~~Dg~~Yq~~~q~~~~~~~~~~~~~~ 218 (447)
T 1oyg_A 139 GSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHT 218 (447)
T ss_dssp EEEEECTTSCEEEEEEEEEGGGTTEEEEEEEEEEEEECSSCEEEEEEEEEEEEECCCSSSBCCHHHHHHHTGGGGTCCCC
T ss_pred CceEECcCCEEEEEEEeecCCCCCceEEEEEecceeecCCCcceecccCCCceEcCCCccccccccccccccccCCCccc
Confidence 44454 699999999987543 23456766653 2334 3466566777542 68
Q ss_pred eeeeEEEEeCCEEEEEeCCCC--------------------------------------------CCeeEEEEeccCCcC
Q 045656 241 LSFPYVFDYHGQIYMMPESRA--------------------------------------------KGEVRLYRAVNFPLE 276 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss~--------------------------------------------sg~l~LYra~~FP~~ 276 (802)
+-.|+||+++|++||+-|+.. .|.|-|++..+-+..
T Consensus 219 fRDP~Vf~d~G~~ymvfgA~t~~~~g~~~~~~l~~w~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~G~Igl~~~s~Dl~~ 298 (447)
T 1oyg_A 219 LRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTL 298 (447)
T ss_dssp CEEEEEEEETTEEEEEEEEEBCTTSCCSSGGGGGBGGGTCSCHHHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECTTSSE
T ss_pred cCCCeEEeECCEEEEEEeeecCCCCcccchhhhcchhhcccCcccchhhhhhcccccccccchhcCcEEEEEEcCCCCCC
Confidence 999999999999999977532 267888876555688
Q ss_pred ceeeeeccCC-----CccCCEEEEECCEEEEEEeCCCC-C---CCCCCCcEE--EEEEcCCCCCCeeCCCCCe
Q 045656 277 WKLEKIIMKK-----PLVDPFMINHDGQYWLFGSDHSG-F---GTTQNGQLE--IWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 277 We~~~~Ll~~-----~~vDatI~~~dG~wwLF~S~~~~-~---g~~~n~~L~--i~~AdSplGPW~~hp~NPI 338 (802)
|+....|++. ..+-|-||+++|+||||+|.... + +.. -.+++ .|+|+++.|||++...+-+
T Consensus 299 W~~~~pL~~~~~v~d~~EcPdlfk~dGkyyLf~S~~~s~~~~~g~~-~~~vy~~g~vsdsl~GPy~plngsGl 370 (447)
T 1oyg_A 299 KKVMKPLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTIDGIT-SNDIYMLGYVSNSLTGPYKPLNKTGL 370 (447)
T ss_dssp EEEEEEEEECTTTCSCCEEEEEEEETTEEEEEEEEEGGGCCCTTCC-TTCEEEEEEEESSTTCCCEEGGGTSE
T ss_pred ceEccccccCCCCCCceEcCcEEEECCEEEEEEecCCCcccccCcC-CCcEEEEEEEcCCCCCCCeeCCCCce
Confidence 9987776542 58999999999999999986311 1 111 12344 6899999999987443333
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=115.08 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=106.8
Q ss_pred eeeCeeeEE---ECCEEEEEEEeeeccCC---------CceEEEEE----EeCCC---CCceEeeeeecC----------
Q 045656 187 FVADPFFYL---QGNDLYLFYETKNSITM---------QGDIGVAK----SVDKG---ATWQQLGIALDE---------- 237 (802)
Q Consensus 187 F~ADPFll~---~~g~~ylF~E~~~~~~~---------~G~I~va~----S~D~g---~tw~~~gvvLde---------- 237 (802)
-|+ +-++. .+|+++|||+....... .-.|+.+. ..+++ ..|+..+++|+.
T Consensus 162 ~WS-GSAi~~~~~dG~i~LFYTg~~~~~~~~g~~~~~~~Q~Ia~a~~~l~a~~dgv~~~~w~k~~~l~~~DG~~Yqt~~q 240 (493)
T 1w18_A 162 EWS-GSSRLMQIHGNTVSVFYTDVAFNRDANANNITPPQAIITQTLGRIHADFNHVWFTGFTAHTPLLQPDGVLYQNGAQ 240 (493)
T ss_dssp EEE-EEEEESSTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEECCCSSSBCCTTT
T ss_pred eEc-CceEEeccCCCEEEEEEEecccccccccccCCcceeEEEEeccceeccCCCccccccccCCceeecCccccccccc
Confidence 445 55666 68999999997654211 13343322 12222 458888888865
Q ss_pred --CCceeeeEEEEeC---CEEEEEeCCCC-------------------------------------CCeeEEEEeccC-C
Q 045656 238 --DWHLSFPYVFDYH---GQIYMMPESRA-------------------------------------KGEVRLYRAVNF-P 274 (802)
Q Consensus 238 --~~HLSyP~VF~~d---G~iYMiPEss~-------------------------------------sg~l~LYra~~F-P 274 (802)
.+++-.|+||+++ |+.||+-|+.. .+.|-|.++.+- +
T Consensus 241 ~~~~~fRDP~vf~D~~~dG~~YmvFeant~~~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~a~~~~g~IGLa~~~s~Dl 320 (493)
T 1w18_A 241 NEFFNFRDPFTFEDPKHPGVNYMVFEGNTAGQRGVANCTEADLGFRPNDPNAETLQEVLDSGAYYQKANIGLAIATDSTL 320 (493)
T ss_dssp CTTCCCEEEEEEECTTSTTCEEEEEEEEBSSCTTCCCCCHHHHCCCTTCTTCCCHHHHHHTTGGGCCEEEEEEEESSTTS
T ss_pred cCCccccCCEEEecCCCCCCEEEEEEeccCCCCcccccccccccccCCccccchhhhcccccchhccceEEEEEeCCCCC
Confidence 4789999999885 89999987632 456777888643 5
Q ss_pred cCceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCC---CCCCCCCcEEEEEEcCCCCCCeeCC-CCCeeeCC
Q 045656 275 LEWKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSG---FGTTQNGQLEIWYSSSPFGPWKPHK-KNPIYNGD 342 (802)
Q Consensus 275 ~~We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~---~g~~~n~~L~i~~AdSplGPW~~hp-~NPI~~~~ 342 (802)
..|+..+.|+. ..++-|-|++++|+||||+|.... .+......+..|+|++++|||+|+. .+-++.+.
T Consensus 321 ~~We~~~PL~~a~~v~deiErP~V~~~~GkyYLFtSs~~~t~a~~~~G~~g~yg~VSdsl~GPY~PLn~gsGlVL~~ 397 (493)
T 1w18_A 321 SKWKFLSPLISANCVNDQTERPQVYLHNGKYYIFTISHRTTFAAGVDGPDGVYGFVGDGIRSDFQPMNYGSGLTMGN 397 (493)
T ss_dssp CCEEEEEEEEECTTTBSCCEEEEEEEETTEEEEEEEECGGGBCTTCCCCSEEEEEEESSSEECCEESTTTTCEEEEC
T ss_pred ccceecCccccCCCCCCcEECCeEEEECCEEEEEEEccCccccCCccCCcceEEEEeCCCCCCCEeccCCCceEecC
Confidence 78998776654 358999999999999999985410 0111123566799999999999987 55555543
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=112.37 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=117.3
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCC---CceeeeEEEEeCCEEEEEe
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDED---WHLSFPYVFDYHGQIYMMP 257 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~---~HLSyP~VF~~dG~iYMiP 257 (802)
+..|+.||..+ ..+|+|||||....... +.-.+++++|.| +.+|++.+++|..+ ...+.|.++.++|++||+-
T Consensus 11 ~~gw~nDPng~~~~~G~yhlfyq~~p~~~~~g~~~wgha~S~D-lv~W~~~~~aL~p~~~~~g~~sgsav~~~g~~~l~Y 89 (432)
T 1w2t_A 11 ITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDD-LVHWRHLPVALYPDDETHGVFSGSAVEKDGKMFLVY 89 (432)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETTSSSCCSCEEEEEEESS-SSSCEEEEEEECCSSTTEEEEEEEEEEETTEEEEEE
T ss_pred CCCCeECCCcCeEECCEEEEEEecCCCCCCCCCcEEEEEEcCC-CcCeEECCccCCCCCCCCCEEeeEEEEECCEEEEEE
Confidence 35699999955 68999999998654432 345799999988 99999999999542 2367799999999999994
Q ss_pred CCC--------CCCeeEEEEeccCCcCcee--ee-eccCC------CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEE
Q 045656 258 ESR--------AKGEVRLYRAVNFPLEWKL--EK-IIMKK------PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEI 320 (802)
Q Consensus 258 Ess--------~sg~l~LYra~~FP~~We~--~~-~Ll~~------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i 320 (802)
-+. ....+.+..+.+ ...|+. .. ++... ...||++++.+|+|||+..... ....+.+.+
T Consensus 90 Tg~~~~~~~~~~~~~q~lA~S~D-~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~dg~~~m~~g~~~---~~~~g~i~l 165 (432)
T 1w2t_A 90 TYYRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGSGK---DEKIGRVLL 165 (432)
T ss_dssp EEEECCCSSCCCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEECSSSEEEEEEEEE---TTTEEEEEE
T ss_pred ecCccCCCCCCceEEEEEEEeCC-CCeEEecCCCceEeCCCccccccccCCEEEEECCEEEEEEEEec---CCCCcEEEE
Confidence 221 113455555555 457987 32 33322 2689999999999999986421 011235778
Q ss_pred EEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEc
Q 045656 321 WYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG 364 (802)
Q Consensus 321 ~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~ 364 (802)
|.|+++ -.|+... ++.... ....-.+..+|..+|+.|+..
T Consensus 166 y~S~Dl-~~W~~~g--~~~~~~-~g~~~EcP~lf~~~g~~vL~~ 205 (432)
T 1w2t_A 166 YTSDDL-FHWKYEG--AIFEDE-TTKEIDCPDLVRIGEKDILIY 205 (432)
T ss_dssp EEESSS-SSCEEEE--EEEEET-TCSCCEEEEEEEETTEEEEEE
T ss_pred EECCCC-CCceEcc--ccccCC-CCCEEECCeEEEECCEEEEEE
Confidence 887665 4698654 333321 111234567888999998865
|
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-08 Score=107.61 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=127.4
Q ss_pred eeeCeeeEEECCEEEEEEEeeec-cCCCceEEEEEEeCCCCCceEeeeeecCC----C----ceeeeEEEE--eCCEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNS-ITMQGDIGVAKSVDKGATWQQLGIALDED----W----HLSFPYVFD--YHGQIYM 255 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~-~~~~G~I~va~S~D~g~tw~~~gvvLde~----~----HLSyP~VF~--~dG~iYM 255 (802)
...||.+++.+++||||.|.... ......|.+++|.| +.+|++.+.||+.. + .++.|.|.. ++|++||
T Consensus 23 ~aHDPsIi~~~g~YYly~T~~~~~~~~~~gi~v~sS~D-LvnW~~~G~aL~~~~~~~~~~~~~~WAP~V~y~~~dGkYYL 101 (441)
T 3nqh_A 23 NAHGACIVEENGRYYLFGEYKSDKSNAFPGFSCYSSDD-LVNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVM 101 (441)
T ss_dssp CCEEEEEEEETTEEEEEEECCCSSCSSCCCEEEEEESS-SSSCEEEEEEECCCSSSTTSTTEEEEEEEEEECTTTCCEEE
T ss_pred EccCCEEEEECCEEEEEEEcCCccCCCCCCeeEEECCC-CCCcEECceeeccCCccccCCCCccCCceeEEEccCCEEEE
Confidence 45799999999999999997432 12335799999987 89999999999652 2 389999987 6999999
Q ss_pred EeC----CCCCCeeEEEEeccCCc-Cceeeeecc-CC---CccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 256 MPE----SRAKGEVRLYRAVNFPL-EWKLEKIIM-KK---PLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 256 iPE----ss~sg~l~LYra~~FP~-~We~~~~Ll-~~---~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+-- ......+-+..+.+ |. .|+....++ .. ..+||++|.. ||++||++... .|+.=+.
T Consensus 102 yyt~~~~~~~~~~igVAtSds-P~GPwt~~gpl~~~g~~~~~IDPsvF~DdDGk~YL~~g~~-----------~I~eLs~ 169 (441)
T 3nqh_A 102 YMHADDMNYKDPHIGYATCST-IAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHGG-----------IVYRLSK 169 (441)
T ss_dssp EEEEEETTSCSCEEEEEEESS-TTSCCEEEEECEETTEECCCCSEEEEECTTSCEEEEEGGG-----------EEEEECT
T ss_pred EEEeCCCCCCcceEEEEEeCC-CCCCceEcceeecCCCcccccCceEEEeCCCCEEEEeCCC-----------cEEEeCC
Confidence 932 22234566655544 44 588765443 32 4689999998 89999998531 2332222
Q ss_pred CCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEec
Q 045656 326 PFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKELE 392 (802)
Q Consensus 326 plGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~~ 392 (802)
-+..++.. ++.... .....|..+|+.+|++|++.=.|....+..+.+.+.+.++ |++++...
T Consensus 170 D~~~~~g~---~~~i~~--g~~~EgP~i~K~~G~YYL~~S~~~g~~~~~~~~arS~s~~GPw~~~g~i 232 (441)
T 3nqh_A 170 DYRTAEEK---VVSGVG--GSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPSVKGPWTRQGLF 232 (441)
T ss_dssp TSSSEEEE---EESCST--TCCCEEEEEEEETTEEEEEEECSCTTSCCCCEEEEESSTTCCCEEEEES
T ss_pred ccccccCc---eEEeCC--CCceECcEEEEECCEEEEEEeCCCCcCCCceEEEEeCCCCCCceECCcc
Confidence 23333321 111111 1257899999999999998876543334567888888876 76665443
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-07 Score=101.80 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=109.4
Q ss_pred CCeecccccc---------CCCCCCceeeCeeeEEECCEEEEEEEeeeccC-----CCceEEEEEEeCCCCCceEe-eee
Q 045656 170 NPIMTCASVS---------SAGFPSNFVADPFFYLQGNDLYLFYETKNSIT-----MQGDIGVAKSVDKGATWQQL-GIA 234 (802)
Q Consensus 170 NPVlt~~~v~---------d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~-----~~G~I~va~S~D~g~tw~~~-gvv 234 (802)
||||+...-. +......-+-.|-++..+|++||||....... ..-.|++|+|.| +.+|+.. ++|
T Consensus 26 ~Pil~p~~~~~~~~~~~~~~~~wD~~gvfnp~ai~~dGky~LfY~~~~~~~~~~~~~~~~ig~A~S~D-Gi~w~~~~~Pv 104 (364)
T 3qc2_A 26 NPVISPIENTKFYCPLTKDSIAWESNDTFNPAATLYNGEIVVLYRAEDKSGVGIGHRTSRLGYATSTD-GTHFQREKTPV 104 (364)
T ss_dssp CCSBCCCSSCCEEETTTTEEECTTSSEEEEEEEEEETTEEEEEEEEECSSSSSTTCSCEEEEEEEESS-SSSCEECSSCS
T ss_pred CCeEecCCcccccccccccccccccCceECceEEEECCEEEEEEEEECCCCcccCCCceEEEEEEeCC-CceeeEcCcCe
Confidence 8888865432 11222345667999999999999999865531 346899999977 8899984 466
Q ss_pred ecC--C--------CceeeeEEEEe-CCEEEEEeCC--CCCCeeEEEEeccCCcCceeeeeccCC---------CccCCE
Q 045656 235 LDE--D--------WHLSFPYVFDY-HGQIYMMPES--RAKGEVRLYRAVNFPLEWKLEKIIMKK---------PLVDPF 292 (802)
Q Consensus 235 Lde--~--------~HLSyP~VF~~-dG~iYMiPEs--s~sg~l~LYra~~FP~~We~~~~Ll~~---------~~vDat 292 (802)
|.. . .+.-.|.|+++ ||++||+--+ .....+.|++..++ ..|+....++.. ...|++
T Consensus 105 l~P~~~~~~~~e~~~gv~DP~v~~~edG~yym~Yta~~~~~~~i~lA~S~Dl-~~W~k~g~i~~p~~~g~f~~~~~kd~~ 183 (364)
T 3qc2_A 105 FYPDNDSQKELEWPGGCEDPRIAVTDDGLYVMMYTQWNRHVPRLAVATSRNL-KDWTKHGPAFAKAFDGKFFNLGCKSGS 183 (364)
T ss_dssp BCCCSSTTHHHHTTTEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEEESSS-SSCEEEEETTSSHHHHTTTTCCCCCEE
T ss_pred EcCCCccccccccCCcEECCEEEEeCCCEEEEEEEecCCCCeEEEEEEECCC-CEEEEeeeccCccccccccccccccce
Confidence 632 1 46889999995 8999999432 33567889998887 789987765532 236777
Q ss_pred EE-----------EECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCee
Q 045656 293 MI-----------NHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKP 332 (802)
Q Consensus 293 I~-----------~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~ 332 (802)
|| +.+|+|||++. ...+.+++|+++. .|++
T Consensus 184 i~~~~r~~~lfp~ki~GkY~M~~g---------~~~I~la~S~Dl~-~W~~ 224 (364)
T 3qc2_A 184 ILTEVVKGKQVIKKVNGKYFMYWG---------EEHVFAATSDDLI-HWTP 224 (364)
T ss_dssp EEEEEETTEEEECEETTEEEEEEC---------SSSBEEEEESSSS-SEEE
T ss_pred eeeeccccceeeEEECCEEEEEEc---------CCeEEEEeCCCcc-cceE
Confidence 76 77999999983 1467788888765 7976
|
| >2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.2e-08 Score=112.58 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=106.7
Q ss_pred eeeEE-ECCEEEEEEEeeeccC---CCceEEEEEE------eCCC---CCceEeeeeecC-------------------C
Q 045656 191 PFFYL-QGNDLYLFYETKNSIT---MQGDIGVAKS------VDKG---ATWQQLGIALDE-------------------D 238 (802)
Q Consensus 191 PFll~-~~g~~ylF~E~~~~~~---~~G~I~va~S------~D~g---~tw~~~gvvLde-------------------~ 238 (802)
+-.+. .+|+++|||+...... ...+|+.+.+ .+++ ..|+...++++. .
T Consensus 198 GSAi~~~DG~l~LFYTG~~~~~~~~~~Q~Ia~a~~~l~~~~s~dgv~~~kw~~~~~l~~~dg~~Yqt~~q~~~~~~~~~~ 277 (571)
T 2yfr_A 198 GSATLNKDGSIQLYYTKVDTSDNNTNHQKLASATVYLNLEKDQDKISIAHVDNDHIVFEGDGYHYQTYDQWKETNKGADN 277 (571)
T ss_dssp EEEEECTTSCEEEEEEEEECTTTTCCEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEECCCSSSBCCHHHHHHHCSSCCC
T ss_pred CeeEECcCCEEEEEEeccccCCCCcccceEEEEEeeeeecccCCCcceecccCCCceecCCCcccccccccccccccCCc
Confidence 44455 6899999999854322 2346666433 1333 346656666643 3
Q ss_pred CceeeeEEEEeC-CEEEEEeCCC--------------------------------------------CCCeeEEEEeccC
Q 045656 239 WHLSFPYVFDYH-GQIYMMPESR--------------------------------------------AKGEVRLYRAVNF 273 (802)
Q Consensus 239 ~HLSyP~VF~~d-G~iYMiPEss--------------------------------------------~sg~l~LYra~~F 273 (802)
+|+=.|+||+++ |++||+-|+. ..|.|-||++.+.
T Consensus 278 ~~FRDP~Vf~d~dG~~YMVfgA~t~~~~~~G~~~ly~w~~yg~~~~f~~~~~~~v~~~~~~~~~a~~~~G~IgL~~s~dl 357 (571)
T 2yfr_A 278 IAMRDAHVIDDDNGNRYLVFEASTGTENYQGDDQIYQWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGIIKLNDD 357 (571)
T ss_dssp CCCEEEEEEECTTCCEEEEEEEEBCTTSCCSGGGGGBGGGTCSCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEEEECSC
T ss_pred ccCcCCeEEEeCCCCEEEEEEeccCCCCcccchhhccccccccccccchhhhccccccccccccchhccceEEEEEcCCC
Confidence 789999999995 9999996643 2478999998763
Q ss_pred ---CcCceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCCC------------CCCCCcEEEEEEcCCCCCCeeC
Q 045656 274 ---PLEWKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGFG------------TTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 274 ---P~~We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~g------------~~~n~~L~i~~AdSplGPW~~h 333 (802)
|..|+....|+. ...+-|-+|+++|+||||+|....-+ ...+.....|+|+++.|||++.
T Consensus 358 ~~n~~~We~~~pL~~~~~v~dm~EcP~lf~~dG~yyL~~S~q~~~~t~~~~~~~A~g~~g~~~~~y~~vSdsl~GPy~pl 437 (571)
T 2yfr_A 358 VKNPSVAKVYSPLISAPMVSDEIERPDVVKLGNKYYLFAATRLNRGSNDDAWMATNKAVGDNVAMIGYVSDNLTHGYVPL 437 (571)
T ss_dssp TTSCCEEEECCCSEECTTTBSCCEEEEEEEETTEEEEEEEEEGGGBSCHHHHHHHHHHHSCCEEEEEEEESSSSSCCEET
T ss_pred cCCcccceeccccccCCCcCceeecCcEEEECCEEEEEEeCCCCcccccccccccccCcCCceEEEEEEeCCCCCCCeeC
Confidence 678998776653 25899999999999999998641111 0122245568999999999998
Q ss_pred CCCCeeeCC
Q 045656 334 KKNPIYNGD 342 (802)
Q Consensus 334 p~NPI~~~~ 342 (802)
..++++-+.
T Consensus 438 ng~glVL~~ 446 (571)
T 2yfr_A 438 NESGVVLTA 446 (571)
T ss_dssp TTTSEEEEC
T ss_pred CCCceeecC
Confidence 888887653
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=99.98 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=107.6
Q ss_pred CCeeccc--cccCCCCCCceee-CeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEE
Q 045656 170 NPIMTCA--SVSSAGFPSNFVA-DPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYV 246 (802)
Q Consensus 170 NPVlt~~--~v~d~~~~~~F~A-DPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~V 246 (802)
+|||... .-.+ ..-+. ||.+++.+++|||+|+. +. ..+.|.+++|.| +.+|+..+.++. + +-..|.+
T Consensus 99 ~pvl~p~~~~~~~----~~g~~yDP~v~~~~d~yym~yt~-~~--~~~~i~la~S~D-l~~W~~~~~i~~-~-~~rd~~~ 168 (338)
T 1vkd_A 99 EEIQWVDVNGEPF----QPSYAYDPRVVKIEDTYYITFCT-DD--HGPTIGVGMTKD-FKTFVRLPNAYV-P-FNRNGVL 168 (338)
T ss_dssp SCCCEECTTSCBC----CCSSEEEEEEEEETTEEEEEEEE-ES--SSEEEEEEEESS-SSSEEEECCSSS-S-SEEEEEE
T ss_pred CCEEeCCCCCccc----cCCEEeCcEEEEECCEEEEEEEE-cC--CcceEEEEEECC-CCeEEECCccCC-C-cCCceEE
Confidence 6777643 1111 23466 99999999999999999 65 468899999877 899999887653 3 4467778
Q ss_pred EE--eCCEEEEE--eCC---CCCCeeEEEEeccCCcCceeeeeccCC-C--ccC-------CEEEEECCEEEEEEeCCCC
Q 045656 247 FD--YHGQIYMM--PES---RAKGEVRLYRAVNFPLEWKLEKIIMKK-P--LVD-------PFMINHDGQYWLFGSDHSG 309 (802)
Q Consensus 247 F~--~dG~iYMi--PEs---s~sg~l~LYra~~FP~~We~~~~Ll~~-~--~vD-------atI~~~dG~wwLF~S~~~~ 309 (802)
|. .+|++||+ |.. ...+.+-++++.+. ..|+.+..+++. . .+| |.+|+.++.|+|+|.....
T Consensus 169 fp~~i~Gky~m~~~~q~~~~~~~~~I~~a~S~Dl-~~W~~~~~l~~~~~~~~wE~~~ig~gp~~i~~~~gwll~y~G~~~ 247 (338)
T 1vkd_A 169 FPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDM-IHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTL 247 (338)
T ss_dssp CSSCBTTBEEEEEEECCSSSCSCCCEEEEEESSS-SCBEEEEEEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEEEEE
T ss_pred EEEEECCEEEEEEEecCCCCCCCcEEEEEEcCCc-ccCCcCceEEcCCCCCCcccCccccCCCcEEeCCcEEEEEecccC
Confidence 76 48999999 543 35688999998775 679877666543 2 466 8899998889999975311
Q ss_pred CCCCCCCcEEEEEEcCCCCCC--eeCCCCCeeeC
Q 045656 310 FGTTQNGQLEIWYSSSPFGPW--KPHKKNPIYNG 341 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW--~~hp~NPI~~~ 341 (802)
......+.++++..+ +..|+ ...+.+|++.-
T Consensus 248 ~~~~~~Y~~G~alld-~~dp~~vi~r~~~p~l~p 280 (338)
T 1vkd_A 248 TCNGYVYSFGAALLD-LDDPSKVLYRSRYYLLTP 280 (338)
T ss_dssp ETTEEEEEEEEEEEC-SSCTTSEEEEBSSCSBCC
T ss_pred CCCCcEEEEEEEEEc-CCCCceEEEcCCCCEEcC
Confidence 000011344555543 23343 23355777763
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-07 Score=97.51 Aligned_cols=130 Identities=19% Similarity=0.317 Sum_probs=98.4
Q ss_pred cCCCceeeeEEEEeCCEEEEEeCCC--CCCeeEEEEeccCCcCceeeeeccC-------CCccCCEEEEE--CCEEEEEE
Q 045656 236 DEDWHLSFPYVFDYHGQIYMMPESR--AKGEVRLYRAVNFPLEWKLEKIIMK-------KPLVDPFMINH--DGQYWLFG 304 (802)
Q Consensus 236 de~~HLSyP~VF~~dG~iYMiPEss--~sg~l~LYra~~FP~~We~~~~Ll~-------~~~vDatI~~~--dG~wwLF~ 304 (802)
.++.++..|.|++.+|++||+..+. ....+.+|++.++ ..|+.+...+. ..+..|.|+.+ +|+|||+|
T Consensus 19 ~~~~~~~DP~i~~~~g~yyl~~t~~~~~~~~i~~~~S~DL-v~W~~~g~~l~~~~~~~~~~~wAP~v~~~~~~g~~yl~y 97 (306)
T 3kst_A 19 TNYLPIADPYVMFYNNKYYAYGTGGTTAGEGFACFSSDDL-KNWKREGQALSATDSYGTWGFWAPEVYYVESKKKFYLFY 97 (306)
T ss_dssp ESSBCCEEEEEEEETTEEEEEEESCCSSSSEEEEEEESSS-SEEEEEEEEEEGGGSSCSSCCEEEEEEEETTTTEEEEEE
T ss_pred CCcccCCCCEEEEECCEEEEEEecCCcCCCCEEEEEeCCc-cccEECceecCCCCcccccccccCeEEEECCCCEEEEEE
Confidence 4567788999999999999997654 3468999999987 68998765332 24789999888 99999999
Q ss_pred eCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 305 SDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 305 S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
|.. ....+++|++|.|||+++...|+.... ++ -+.+|.+ ||+.|+..-.. .-|..+.+.+++
T Consensus 98 t~~--------~~i~va~s~~p~Gpw~~~~~~p~~~~~----~i-Dp~vf~D~dG~~Yl~~~~~--~~g~~i~~~~ls 160 (306)
T 3kst_A 98 SAE--------EHICVATSTTPEGPFRQEVKQPIWSEK----SI-DTSLFIDDDGTPYLYFVRF--TDGNVIWVAQMT 160 (306)
T ss_dssp EET--------TEEEEEEESSTTCCCBCSSCCCSSSSC----CE-EEEEEECTTSCEEEEEEEE--SSSEEEEEEEBC
T ss_pred ECC--------CcEEEEEcCCCCCCcEeCCCccccCCC----cc-cceEEEeCCCCEEEEEEEe--CCCCEEEEEEeC
Confidence 873 368899999999999988777865311 12 2667876 79999976321 125568777764
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-07 Score=99.17 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=93.6
Q ss_pred ceeeCeeeEEECCEEEEEEEeeecc----CCCceEEEEEEeCCCCCceE--eeeeecCC-----CceeeeEEEEeCCEEE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQ--LGIALDED-----WHLSFPYVFDYHGQIY 254 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~--~gvvLde~-----~HLSyP~VF~~dG~iY 254 (802)
..++ |-++..+|++||||+..... .....|++|.|.| +.+|+. .++||..+ .|+..|.||+++|++|
T Consensus 72 g~~s-gsav~~~g~~~l~YTg~~~~~~~~~~~~~q~lA~S~D-~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~dg~~~ 149 (432)
T 1w2t_A 72 GVFS-GSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWR 149 (432)
T ss_dssp EEEE-EEEEEETTEEEEEEEEEECCCSSCCCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEECSSSEE
T ss_pred CEEe-eEEEEECCEEEEEEecCccCCCCCCceEEEEEEEeCC-CCeEEecCCCceEeCCCccccccccCCEEEEECCEEE
Confidence 3566 88889999999999986531 1235789999888 779998 56777542 5799999999999999
Q ss_pred EEeCC---CCCCeeEEEEeccCCcCceeeeeccC----CCccCCEEEEECCEEEEEEeCC
Q 045656 255 MMPES---RAKGEVRLYRAVNFPLEWKLEKIIMK----KPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 255 MiPEs---s~sg~l~LYra~~FP~~We~~~~Ll~----~~~vDatI~~~dG~wwLF~S~~ 307 (802)
|+-.+ ...+.+.||+..++ ..|+....+.. ...+-|.+|+.+|+|||++|..
T Consensus 150 m~~g~~~~~~~g~i~ly~S~Dl-~~W~~~g~~~~~~~g~~~EcP~lf~~~g~~vL~~s~~ 208 (432)
T 1w2t_A 150 MVLGSGKDEKIGRVLLYTSDDL-FHWKYEGAIFEDETTKEIDCPDLVRIGEKDILIYSIT 208 (432)
T ss_dssp EEEEEEETTTEEEEEEEEESSS-SSCEEEEEEEEETTCSCCEEEEEEEETTEEEEEEEET
T ss_pred EEEEEecCCCCcEEEEEECCCC-CCceEccccccCCCCCEEECCeEEEECCEEEEEEeCC
Confidence 99432 24478999998776 78998765432 2478999999999999999874
|
| >3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.9e-07 Score=100.26 Aligned_cols=154 Identities=19% Similarity=0.292 Sum_probs=101.8
Q ss_pred eeCeeeEEECCEEEEEEEeeeccC---------CCceEEEEE----EeCCCCCce---EeeeeecC------------CC
Q 045656 188 VADPFFYLQGNDLYLFYETKNSIT---------MQGDIGVAK----SVDKGATWQ---QLGIALDE------------DW 239 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~---------~~G~I~va~----S~D~g~tw~---~~gvvLde------------~~ 239 (802)
|+=.-++..||+++|||+...... ...+|++++ ..+++..++ ...++++- .+
T Consensus 163 WSGSAi~~~DG~i~LFYT~v~~~~~~~g~~~~~~~Q~ia~A~~~i~~d~dgv~~~~~~~~~~l~~~DG~~Yqt~~q~~~~ 242 (496)
T 3vss_A 163 WSGSARVSKNGEIKLFFTDVAFYRNSDGTNIKPYDPRIALSVGKVKANKKGVTLTGFNKVTDLLQADGTYYQTGAQNEFF 242 (496)
T ss_dssp EEEEEEECTTCEEEEEEEEEEECBCTTSCBSSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCCSSSBCCTTTCTTC
T ss_pred EecceEECCCCeEEEEEEEeecccCCCccccccceeEEEEEeeeeeecCCcceEeccCCCcccccCChhhhhcccccccc
Confidence 444545567899999999754321 124677765 234444332 33344442 26
Q ss_pred ceeeeEEEEe---CCEEEEEeCCC-------------------------------------CCCeeEEEEeccC-CcCce
Q 045656 240 HLSFPYVFDY---HGQIYMMPESR-------------------------------------AKGEVRLYRAVNF-PLEWK 278 (802)
Q Consensus 240 HLSyP~VF~~---dG~iYMiPEss-------------------------------------~sg~l~LYra~~F-P~~We 278 (802)
++=.|+||++ +|+.||+-|.+ +.+.|-|.++.+- +..||
T Consensus 243 ~fRDP~vf~DP~~dG~~YLVFEgnT~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~anG~IGLa~~~s~D~~~We 322 (496)
T 3vss_A 243 NFRDPFTFEDPAHPGETFMVFEGNSAMQRETATCNEADLGYRQGDPYAETVDDVNASGATYQIGNVGLAKAKNKQLTEWE 322 (496)
T ss_dssp CCEEEEEECCTTSTTCCEEEEEEEBSSCGGGCCCCHHHHCCCTTCTTCCCHHHHHHHTGGGCEEEEEEEEESSTTSCCEE
T ss_pred ccCCCeeEecCCCCCcEEEEEecccCCcCccccccccccccccccccccccccccccccccccceEEEEEccCCCCCccE
Confidence 6889999984 78999996642 2466778888543 46899
Q ss_pred eeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC---CCCCCCcEEEEEEcCCCCCCeeCC-CCCeeeC
Q 045656 279 LEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF---GTTQNGQLEIWYSSSPFGPWKPHK-KNPIYNG 341 (802)
Q Consensus 279 ~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~---g~~~n~~L~i~~AdSplGPW~~hp-~NPI~~~ 341 (802)
..+.|++ ..+|=|-||+++||||||++.+... +......+.=|+||++.|||+|-. .+=++.+
T Consensus 323 ~~~PL~~a~~v~deiErP~vf~~dGKyYLFt~s~~~t~a~~~~g~~~~yGfVSd~L~G~Y~PLN~gsGlVl~ 394 (496)
T 3vss_A 323 FLPPILSANCVTDQTERPQIYFKDGKSYLFTISHRGTFAAGLDGPEGVYGFVGDGIRSDYQPLNGGSGLALG 394 (496)
T ss_dssp EEEEEEEEETTBSCCEEEEEEEETTEEEEEEEECSTTBCTTCCCCSEEEEEEESSSSBCCEETTTTTCEEEE
T ss_pred EeCccccCCCCCCceeCCcEEEECCEEEEEEecccccccccCCCCceeEEEecCCCCCCceeccCCCceEec
Confidence 8877664 3689999999999999999743211 111223566689999999999866 4444443
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=96.13 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=103.5
Q ss_pred ecCCCceeee-EEEEeCCEEEEE----eCCC---------------CCCeeEEEEeccCCcCceeeeeccCC--------
Q 045656 235 LDEDWHLSFP-YVFDYHGQIYMM----PESR---------------AKGEVRLYRAVNFPLEWKLEKIIMKK-------- 286 (802)
Q Consensus 235 Lde~~HLSyP-~VF~~dG~iYMi----PEss---------------~sg~l~LYra~~FP~~We~~~~Ll~~-------- 286 (802)
.+|+..+..| .|+..+|++||+ |... ....+-+++..++ ..|+.....+..
T Consensus 44 ~~e~~~~~DP~~v~~~dG~Yymfyt~~~~~~~G~~~~~~~~~~~~w~~~~i~~a~S~DL-v~W~~~g~~l~~~~~~~~d~ 122 (374)
T 3r4z_A 44 YEEGVIRRDPSAVLKVDDEYHVWYTKGEGETVGFGSDNPEDKVFPWDKTEVWHATSKDK-ITWKEIGPAIQRGAAGAYDD 122 (374)
T ss_dssp CCTTEEEECCCCBEEETTEEEEEEEEEESCCCCSSCSCTTSCSSTTTTCEEEEEEESSS-SEEEEEEEEECCCCTTSTTS
T ss_pred ccCCcCcCCCCeEEEECCEEEEEEEcCCCcccccccccccccccccCccEEEEEECCCC-cCcEeCcccCCCCCCCCccC
Confidence 3467789999 688999999997 3211 1234667788776 689987753321
Q ss_pred -CccCCEEEEECCEEEEEEeCCCCCC-CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC--------------------
Q 045656 287 -PLVDPFMINHDGQYWLFGSDHSGFG-TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS-------------------- 344 (802)
Q Consensus 287 -~~vDatI~~~dG~wwLF~S~~~~~g-~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~-------------------- 344 (802)
.+.+|++++++|+||||||...... ......+.+++|+++.|||+++ .+||+.....
T Consensus 123 ~gvwaPsvi~~dGkyyL~Yt~~~~~~~~~~~~~igvA~Sdd~~Gpw~~~-~~Pvi~~~~~~~w~~ddd~~~~~~~~~~~d 201 (374)
T 3r4z_A 123 RAVFTPEVLRHNGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKS-DAPILSPENDGVWDTDEDNRFLVKEKGSFD 201 (374)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECSSCCTTCCBEEEEEEESSTTCCCEEC-SSCSBCCCCCSEECSSSSCTTCEEECCSTT
T ss_pred CCEECCEEEEECCEEEEEEEeccCCCCCCCcceEEEEEECCCCCCeEEC-CCCEeCCCcCCceeecCCceEEEecCCccc
Confidence 3778999999999999998642211 1123468899999999999996 6898864210
Q ss_pred CCcccCCccEEECCeEEEEcccCCC----CCCc---eEEEEEeccCC-ccceEEec
Q 045656 345 LGARNGGRPFVYDGNLYRVGQDCAE----SYGR---RVRTFKVEILT-KNEYKELE 392 (802)
Q Consensus 345 ~~aR~GG~vF~~dGkLyRp~QdC~~----~YG~---~L~l~~It~Lt-~~~y~E~~ 392 (802)
...-.++.+|+.+|++|+..-.+.. .+|. .+.+...++++ + |+...
T Consensus 202 ~~~~~~P~v~~~~g~yyl~Y~~~~~~~~~~~~~~~~~igvA~sds~~Gp--w~~~~ 255 (374)
T 3r4z_A 202 SHKVHDPCLMFFNNRFYLYYKGETMGESMNMGGREIKHGVAIADSPLGP--YTKSE 255 (374)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEECTTCCEETTEECEEEEEEEESSTTCC--CEECT
T ss_pred cCccccceEEEECCEEEEEEEecCCCCccccCCCcceEEEEEECCCCCC--CEECC
Confidence 0012456678889999997765432 1343 57777776554 4 54433
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-06 Score=98.49 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=105.6
Q ss_pred CCceeeCeee-EEECCEEEEEEEeeeccCC--C-ceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCC
Q 045656 184 PSNFVADPFF-YLQGNDLYLFYETKNSITM--Q-GDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 184 ~~~F~ADPFl-l~~~g~~ylF~E~~~~~~~--~-G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEs 259 (802)
+..|+-||-. +..+|+|+|||-....... . -.+++++|.| +.+|++++++|..+-
T Consensus 16 ~~gw~NDPnG~~~~~G~yHlFYQ~~P~~~~~g~~~~WgHa~S~D-lv~W~~~~~aL~P~~-------------------- 74 (543)
T 1st8_A 16 PSNWMNDPNGPMLYQGVYHFFYQYNPYAATFGDVIIWGHAVSYD-LVNWIHLDPAIYPTQ-------------------- 74 (543)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEESSCSSCCSCCEEEEEEESS-SSSEEECCCSBCCCS--------------------
T ss_pred CcCCeECCcccEEECCEEEEEEeeCCCCCCCCCccEEEEEECCC-ccceEECCeeccCCC--------------------
Confidence 4579999995 5789999999987665432 2 4689999987 899999988775210
Q ss_pred CCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE-ECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC----CCCCeeCC
Q 045656 260 RAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN-HDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP----FGPWKPHK 334 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~-~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp----lGPW~~hp 334 (802)
.|+ +..+...+++. .+|+++||||.... .......++++++. +..|++++
T Consensus 75 ----------------~~D------~~Gv~SGsav~~~dg~~~l~YTg~~~---~~~q~q~lA~s~D~~d~~l~~w~k~~ 129 (543)
T 1st8_A 75 ----------------EAD------SKSCWSGSATILPGNIPAMLYTGSDS---KSRQVQDLAWPKNLSDPFLREWVKHP 129 (543)
T ss_dssp ----------------GGG------TTEEEEEEEEEETTTEEEEEEEEECT---TSCEEEEEEEESCTTCTTCCCEEECT
T ss_pred ----------------ccc------cCCEEcceEEEeeCCEEEEEEEEeCC---CCcEEEEEEEECCCCCCCcceeEEcC
Confidence 010 11233444444 59999999997311 11225668888765 47899999
Q ss_pred CCCeeeCCCC---CCcccCCcc-EE-ECCeEEEEcccCCCCCCceEEEEEeccCCccceE
Q 045656 335 KNPIYNGDKS---LGARNGGRP-FV-YDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYK 389 (802)
Q Consensus 335 ~NPI~~~~~~---~~aR~GG~v-F~-~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~ 389 (802)
.|||+...+. ...| -..+ +. .+|++|++.-..... ...+.+++.++|..|+|.
T Consensus 130 ~nPVi~~~~g~~~~~fR-DP~vvw~~~~g~w~mv~ga~~~~-~G~i~ly~S~Dl~~W~~~ 187 (543)
T 1st8_A 130 KNPLITPPEGVKDDCFR-DPSTAWLGPDGVWRIVVGGDRDN-NGMAFLYQSTDFVNWKRY 187 (543)
T ss_dssp TCCSBCCCTTCCTTSEE-CCCCCEECTTSCEEEEEEEEETT-EEEEEEEEESSSSSCEEC
T ss_pred CCcEEeCCCCCCcCccC-CCeEEEECCCCcEEEEEEEecCC-ceEEEEEECCCCCCcEEC
Confidence 9999964321 1234 4553 55 489988876322222 235889999999999885
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=97.27 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=105.8
Q ss_pred CCceeeCeee-EEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFF-YLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFl-l~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||-. +..+|+|+|||-...... +.-.+++++|.| +.+|++++++|..+-
T Consensus 17 ~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~~--------------------- 74 (541)
T 2ac1_A 17 PKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTD-LINWDPHPPAIFPSA--------------------- 74 (541)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEECTTCSSSCSCEEEEEEESS-SSSBEEEEEEECCCS---------------------
T ss_pred ccCCeeCCCccEEECCEEEEEEeeCCCCCCCCCcEEEEEECCC-ccceEECceeecCCC---------------------
Confidence 4579999995 578999999998765543 234679999987 899999998876210
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE-ECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC----CCCCeeCCC
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN-HDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP----FGPWKPHKK 335 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~-~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp----lGPW~~hp~ 335 (802)
.|+ +..+...+++. .+|+++||||.... .......++++++. +..|++++.
T Consensus 75 ---------------~~D------~~G~~SGsav~~~dg~~~l~YTg~~~---~~~~~q~lA~s~D~~d~~l~~w~k~~~ 130 (541)
T 2ac1_A 75 ---------------PFD------INGCWSGSATILPNGKPVILYTGIDP---KNQQVQNIAEPKNLSDPYLREWKKSPL 130 (541)
T ss_dssp ---------------GGG------TTCEEEEEEEECTTSCEEEEEEEECT---TSCEEEEEEEESCTTCTTCCCEEECTT
T ss_pred ---------------ccc------cCCEEcceEEEeeCCEEEEEEEEeCC---CCcEEEEEEEECCCCCCCceeEEecCC
Confidence 010 11233444444 48999999997311 11235678888765 478999999
Q ss_pred CCeeeCC--C---CCCcccCCc-cEEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceE
Q 045656 336 NPIYNGD--K---SLGARNGGR-PFVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYK 389 (802)
Q Consensus 336 NPI~~~~--~---~~~aR~GG~-vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~ 389 (802)
|||+... + ....| -.. ++.. +|++|++.-..... ...+.+++.++|..|+|.
T Consensus 131 nPVi~~~~~~~~~~~~fR-DP~vvw~~~~g~w~m~~ga~~~~-~G~i~ly~S~Dl~~W~~~ 189 (541)
T 2ac1_A 131 NPLMAPDAVNGINASSFR-DPTTAWLGQDKKWRVIIGSKIHR-RGLAITYTSKDFLKWEKS 189 (541)
T ss_dssp CCSBCCCTTTCCCTTSEE-CCCCCEECTTSCEEEEEEEEETT-EEEEEEEEESSSSSCEEC
T ss_pred CcEEcCCCCCCCCCCceE-CCeEEeEeCCCeEEEEEEEecCC-ceEEEEEECCCCCCcEEc
Confidence 9999643 1 12234 455 3554 88988875322222 234899999999999885
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-06 Score=92.77 Aligned_cols=146 Identities=15% Similarity=0.225 Sum_probs=96.8
Q ss_pred CCCceeeeE-EEEeCCEEEEE----eCC-C--------------CCCeeEEEEeccCCcCceeeeeccCC---------C
Q 045656 237 EDWHLSFPY-VFDYHGQIYMM----PES-R--------------AKGEVRLYRAVNFPLEWKLEKIIMKK---------P 287 (802)
Q Consensus 237 e~~HLSyP~-VF~~dG~iYMi----PEs-s--------------~sg~l~LYra~~FP~~We~~~~Ll~~---------~ 287 (802)
+.+.+..|. |+.+||++||+ |.. . ....+.+++..+. ..|+.+...+.. .
T Consensus 86 ~g~~~~DP~~v~~~dG~yymfY~~~~~~~~G~~~~~~~~~~~~~~~~~i~~a~S~Dl-v~W~~~g~~L~~~~~~~wd~~g 164 (404)
T 4ak5_A 86 EGVVRRDPSAMLKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDG-LTWKEQGIAVKRGEKGAYDDRS 164 (404)
T ss_dssp TTEEEECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESSS-SEEEEEEEEECCCSTTSTTSSE
T ss_pred cceeecCCcEEEEECCEEEEEEEeCCCcccccccccccccccccCccEEEEEECCCC-CCceeCceEeecCCCCccccCC
Confidence 345568898 55679999996 421 0 1235677777775 689987653321 2
Q ss_pred ccCCEEEEECCEEEEEEeCCCCCC-CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCC--------------------C
Q 045656 288 LVDPFMINHDGQYWLFGSDHSGFG-TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSL--------------------G 346 (802)
Q Consensus 288 ~vDatI~~~dG~wwLF~S~~~~~g-~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~--------------------~ 346 (802)
+.+|++++++|+|||||+...... ......+++++|++|.|||+++ .+||+...+.. .
T Consensus 165 v~aP~Vi~~~Gkyym~Yt~~~~~~~~~~~~~IgvA~Sdsp~Gpwt~~-~~Pvl~~~~~~~W~~ddd~~~~~~~~~~wD~~ 243 (404)
T 4ak5_A 165 VFTPEVMEWKGKYYLCYQAVKSPYTVRVKNTIGMACADSPEGLWTKT-DKPVLEPSDTGEWEGDEDNRFKVVSKGDFDSH 243 (404)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCCCTTCCCEEEEEEESSTTCCCEEC-SSCSBCCCSCCEECSSSSCTTCEEECCSTTSS
T ss_pred EEeeEEEEECCEEEEEEEeccCCCCCCCcceEEEEEEeCCCCCceEC-CCceecCCCCcceeeccCceeeeccCCcccCC
Confidence 679999999999999998642211 1234478999999999999995 58988643110 0
Q ss_pred cccCCccEEECCeEEEEcccCCCC----CC---ceEEEEEeccCC
Q 045656 347 ARNGGRPFVYDGNLYRVGQDCAES----YG---RRVRTFKVEILT 384 (802)
Q Consensus 347 aR~GG~vF~~dGkLyRp~QdC~~~----YG---~~L~l~~It~Lt 384 (802)
.-.++.+|..+|++|++.-.+... +| ..+.+...+++.
T Consensus 244 ~~~~P~v~~~~g~yyl~Ysg~~~~~~~~~~~~~~~igvA~Sdd~~ 288 (404)
T 4ak5_A 244 KVHDPCIIPYNGKFYMYYKGERMGEEITWGGREIKHGVAIAENPM 288 (404)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTT
T ss_pred cEECCEEEEECCEEEEEEECCCCCCccccCCCcceEEEEEECCCC
Confidence 112467788899999976543221 33 356777776654
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-05 Score=91.31 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=119.3
Q ss_pred EeeeeecCCCceeeeEEEEeCCEEEEEeCCCC-CCeeEEEEeccCCcCceeeeecc-------------------CCCcc
Q 045656 230 QLGIALDEDWHLSFPYVFDYHGQIYMMPESRA-KGEVRLYRAVNFPLEWKLEKIIM-------------------KKPLV 289 (802)
Q Consensus 230 ~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~-sg~l~LYra~~FP~~We~~~~Ll-------------------~~~~v 289 (802)
+..+||... ...|.|++.++.+||+..+.+ ...+.+|++.++ ..|+.+...+ ...+.
T Consensus 8 ~~NPil~g~--~~DP~iir~~~~YY~~~st~~~~pg~~i~~S~DL-vnW~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~W 84 (542)
T 3zxk_A 8 FTNPVLWED--HPALEVFRVGSVFYYSSSTFAYSPGAPVLKSYDL-VHWTPVTHSVPRLNFGSNYDLPSGTPGAYVKGIW 84 (542)
T ss_dssp EESCSCCSC--CCSCEEEEETTEEEEECCCBTEESEEEEEEESSS-SSCEEEEEEESSCCSCGGGGCCSSTTTTTTCSBC
T ss_pred ccCCccCCC--CCCCeEEEECCEEEEEEecCccCCCeEEEEcCCC-CCccccccccccCCccccccccCCcccccCCceE
Confidence 445677654 389999999999999987643 357999999997 6899865422 13489
Q ss_pred CCEEEEEC--CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC------------CeeCC---CC---C-eeeC-CC----
Q 045656 290 DPFMINHD--GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP------------WKPHK---KN---P-IYNG-DK---- 343 (802)
Q Consensus 290 DatI~~~d--G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP------------W~~hp---~N---P-I~~~-~~---- 343 (802)
.|+|.+++ |+|||+++.. ....+++|++|.|| |+++. .+ | +..| +.
T Consensus 85 AP~i~~~~~~G~fYly~~~~--------~~~~v~~a~~p~GPf~~g~~l~~~~~ws~~~~~~~~~iDp~~f~DdDG~~Yl 156 (542)
T 3zxk_A 85 ASTLRYRRSNDRFYWYGCVE--------GRTYLWTSPGGNALANNGEVPPSAWNWQHTATIDNCYYDAGLLIDDDDTMYI 156 (542)
T ss_dssp SCEEEEETTTTEEEEEEEET--------TEEEEEEEECTTGGGTTTCCCGGGCCCEEEEEESSCCTTCEEEECTTSCEEE
T ss_pred CCcEEEECCCCEEEEEEECC--------CcEEEEEECCCCCCccccccccccCccccccccCCCCCCCcEEEcCCCCEEE
Confidence 99999998 9999998762 36889999999999 97641 11 1 0111 00
Q ss_pred ------------------------------CCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEecc--C-CccceEE
Q 045656 344 ------------------------------SLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEI--L-TKNEYKE 390 (802)
Q Consensus 344 ------------------------------~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~--L-t~~~y~E 390 (802)
......|..+++.+|++|+..=.. |.++.+.+.+. + .|++++.
T Consensus 157 ~~g~~~i~~~eL~~d~~~~~~~~~~i~~~~~g~~~EgP~i~k~~G~YYL~~s~~----~~~~~v~rs~s~s~~GPy~~~~ 232 (542)
T 3zxk_A 157 AYGNPTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVTRP----ADAEYVLRSTTGSPFGPYEART 232 (542)
T ss_dssp EECSSSEEEEEECTTSSSEEEEEEEEECCTTCCCCEEEEEEEETTEEEEEEEET----TTEEEEEEESSSSTTCCEEEEE
T ss_pred EEcCCCEEEEEeCCccCcccCCcEEEEeCCCCccccccEEEEECCEEEEEEEeC----CCCEEEEEEcCCCCCCCceECC
Confidence 001345566788899999876431 34677888877 4 3655543
Q ss_pred ec--cccCCCCCC-ccccccccCCCCCeEEEE
Q 045656 391 LE--GRNAWNGAR-YHHLDAQQLSSGEWIAVM 419 (802)
Q Consensus 391 ~~--~~~~w~~~~-~Hhld~~~l~~g~~i~vv 419 (802)
.. ......+.+ .||-++-+-++|+|.+++
T Consensus 233 vl~~~~~~v~~~G~~~hg~iv~~~~G~w~~~~ 264 (542)
T 3zxk_A 233 LVSRIQGPLANAGFAHQGGIVDAPDGTWHYVA 264 (542)
T ss_dssp EEESCCCSSSSSCCCEEEEEEECTTSCEEEEE
T ss_pred EecCCCcceeccCCCCCCEEEECCCCCEEEEE
Confidence 22 122333444 789889998999987664
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.8e-06 Score=92.57 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=106.0
Q ss_pred CCceeeCee-eEEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPF-FYLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPF-ll~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||- ++..+|+|||||-...... +.-.+++++|.| +.+|++++++|..+
T Consensus 16 ~~gw~NDPnG~~~~~G~yHlfyQ~~P~~~~wg~~~WgHa~S~D-lv~W~~~~~al~~~---------------------- 72 (518)
T 1y4w_A 16 QKNWMNDPNGLLYHNGTYHLFFQYNPGGIEWGNISWGHAISED-LTHWEEKPVALLAR---------------------- 72 (518)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEECTTCSSSCSCEEEEEEESS-SSSCEEEEEEECCB----------------------
T ss_pred CcCceECCCcceEECCEEEEEEeeCCCCCCCCCcEEEEEEeCC-CccEEECCceEecC----------------------
Confidence 356999999 5579999999997654432 345789999988 99999999988411
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECC-----------EEEEEEeCCCCCCC------C---CCCcEEE
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDG-----------QYWLFGSDHSGFGT------T---QNGQLEI 320 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG-----------~wwLF~S~~~~~g~------~---~n~~L~i 320 (802)
..|. |+ ...+...+++..++ +++||||.....+. . ....+.+
T Consensus 73 -----------g~P~-~d------~~g~~SGsav~~~~~~~g~~~~~~~~~~l~YTg~~~~~~~~~~~~~~~~~~q~q~l 134 (518)
T 1y4w_A 73 -----------GFGS-DV------TEMYFSGSAVADVNNTSGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSI 134 (518)
T ss_dssp -----------TTTS-CC------CBEEEEEEEEECTTCTTSCCCSSSCCEEEEEEEEESSCEECTTSCEECTTEEEEEE
T ss_pred -----------CCCC-CC------CCceEeeeEEEcCCCccccccCCCccEEEEEeeeeccccccccccccccceeEEEE
Confidence 1121 10 01233444444433 89999986421110 0 0124668
Q ss_pred EEEcCCCCCCeeC-CCCCeeeCCCC------CCcccCCccEEE--CCeEEEE--cccCCCCCCceEEEEEeccCCccceE
Q 045656 321 WYSSSPFGPWKPH-KKNPIYNGDKS------LGARNGGRPFVY--DGNLYRV--GQDCAESYGRRVRTFKVEILTKNEYK 389 (802)
Q Consensus 321 ~~AdSplGPW~~h-p~NPI~~~~~~------~~aR~GG~vF~~--dGkLyRp--~QdC~~~YG~~L~l~~It~Lt~~~y~ 389 (802)
++|++....|+++ +.|||+...+. ...| -..+|.+ +|++|++ .-. +..+.+++.++|..|+|.
T Consensus 135 A~s~D~g~~w~k~~~~~pvi~~~~~~y~~~~~~fR-DP~V~~~~~~g~w~mv~~~g~-----~~~i~ly~S~DL~~W~~~ 208 (518)
T 1y4w_A 135 AYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFR-DPFVFWHDESQKWVVVTSIAE-----LHKLAIYTSDNLKDWKLV 208 (518)
T ss_dssp EEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEE-EEEEEEETTTTEEEEEEEEGG-----GTEEEEEEESSSSSCEEE
T ss_pred EEEcCCCceEEEcCCCCCeEecCCcccccCCCCcC-CCcEeEECCCCcEEEEEEecC-----CCeEEEEECCCCCCCeEC
Confidence 8888777789999 88999976321 0011 1456665 4899988 321 236999999999999987
Q ss_pred Eec
Q 045656 390 ELE 392 (802)
Q Consensus 390 E~~ 392 (802)
...
T Consensus 209 ~~~ 211 (518)
T 1y4w_A 209 SEF 211 (518)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=93.73 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=94.8
Q ss_pred eeeecCCCceeeeEEEEeCCEEEEEeCCCC-CCeeEEEEeccCCcCceeeeeccC-------------CCccCCEEEEEC
Q 045656 232 GIALDEDWHLSFPYVFDYHGQIYMMPESRA-KGEVRLYRAVNFPLEWKLEKIIMK-------------KPLVDPFMINHD 297 (802)
Q Consensus 232 gvvLde~~HLSyP~VF~~dG~iYMiPEss~-sg~l~LYra~~FP~~We~~~~Ll~-------------~~~vDatI~~~d 297 (802)
.+||.. -...|.|++.+|++||+..+.. ...+.+|++.++ ..|+.....++ ..+..|+|++++
T Consensus 7 NPil~g--~~~DP~i~~~~~~yY~~~s~~~~~~gi~i~~S~DL-v~W~~~g~~l~~~~~~~~~~~~~~~~~wAP~i~~~~ 83 (528)
T 1yrz_A 7 NPILPG--FHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDL-KHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSYHD 83 (528)
T ss_dssp SCSBCS--SCCSCEEEEETTEEEEEECCBTEESBCEEEEESSS-SSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEEET
T ss_pred CCccCC--CCCCCeEEEECCEEEEEEccCccCCCeEEEECCCc-cCceECccccCCcccccccCCCCCCCEECCeEEEEC
Confidence 355642 2578999999999999987543 467999999987 68998654221 237899999999
Q ss_pred CEEEEEEeCCCCC-CCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEc-----ccCCCC
Q 045656 298 GQYWLFGSDHSGF-GTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVG-----QDCAES 370 (802)
Q Consensus 298 G~wwLF~S~~~~~-g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~-----QdC~~~ 370 (802)
|+|||+||..... +...+..+.+++|++|.|||++ |+..+. .+ --+.+|.+ ||+.|+.. ++.. .
T Consensus 84 g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~----p~~~~~---~~-iDp~vf~D~dG~~Yl~~~~~~~~~~~-~ 154 (528)
T 1yrz_A 84 GTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSD----PIYLNS---SG-FDPSLFHDDDGRKWLVNMIWDYRKGN-H 154 (528)
T ss_dssp TEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCC----CEECCC---SC-SCCEEEECTTSCEEEEEEEECCCTTS-C
T ss_pred CEEEEEEecccCCCCCcccceEEEEEeCCCCCCccc----cEECCC---Cc-CCCceEECCCCCEEEEEeeccCCCCC-C
Confidence 9999999853211 1111123778999999999985 544321 11 23667875 89999982 2211 1
Q ss_pred CCceEEEEEecc
Q 045656 371 YGRRVRTFKVEI 382 (802)
Q Consensus 371 YG~~L~l~~It~ 382 (802)
...+|.+.|++.
T Consensus 155 ~~~~i~~~~l~~ 166 (528)
T 1yrz_A 155 PFAGIILQEYSE 166 (528)
T ss_dssp SEEEEEEEEEET
T ss_pred CCCeEEEEEECC
Confidence 345788888764
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-06 Score=90.56 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=99.5
Q ss_pred ecCCCceeeeE-EEEeCCEEEEEeCCC-------------------CCCeeEEEEeccCCcCceeeee-ccCC-------
Q 045656 235 LDEDWHLSFPY-VFDYHGQIYMMPESR-------------------AKGEVRLYRAVNFPLEWKLEKI-IMKK------- 286 (802)
Q Consensus 235 Lde~~HLSyP~-VF~~dG~iYMiPEss-------------------~sg~l~LYra~~FP~~We~~~~-Ll~~------- 286 (802)
.++..++..|. |+.++|++||+.... ....+.+++..+. ..|+.+.. |...
T Consensus 89 ~~~~v~~~DP~~vi~~dG~Yylfyt~~~~~~~G~~~~~~~~~~~p~~~~~i~~A~S~Dl-v~W~~~g~~l~~~~~~~wd~ 167 (408)
T 3p2n_A 89 YEEGVVRRDPSAIIKENGKYYVWYSKSTGPTQGFGGDIEKDKVFPWDRCDIWYATSEDG-WTWKEEGPAVTRGEKGAYDD 167 (408)
T ss_dssp CCTTEEEECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESSS-SEEEEEEEEECCCSTTSTTS
T ss_pred ccCCcEeCCCCEEEEECCEEEEEEEeCCCcccccccccccccccccccceEEEEEcCCC-CeeeEeCceeCCCCCCCccc
Confidence 34566778899 889999999994321 1234667777775 68998765 3321
Q ss_pred -CccCCEEEEECCEEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCC------------------CCC-
Q 045656 287 -PLVDPFMINHDGQYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGD------------------KSL- 345 (802)
Q Consensus 287 -~~vDatI~~~dG~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~------------------~~~- 345 (802)
.+.+|++++++|+|||||+.... .+.......++++|+|+.|+|+++ .+||+... ..+
T Consensus 168 ~gv~aPsVi~~dGkYyL~Yt~~~~~~~~~~~~~i~va~A~S~DG~W~~~-~~pli~~~~~~~~~~e~d~~~~~~~~~~wd 246 (408)
T 3p2n_A 168 RSVFTVEIMKWEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPWTKS-EEPILSPADNGVWKGEEQDRFAVIKKGDFD 246 (408)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECSSCCTTCCCEEEEEEESSTTCCCEEC-SSCSBCCCSCCEECSSSCCTTCEEECCSTT
T ss_pred CceEeeEEEEECCEEEEEEEeecCCCCCcCCCceEEEEEECCCCCEEEC-CcceeCCCCCceEEEecCCcccccccceec
Confidence 26899999999999999986321 111113468899999999999997 47876432 001
Q ss_pred -CcccCCccEEECCeEEEEcccCCC-------CCCceEEEEEeccCC-cc
Q 045656 346 -GARNGGRPFVYDGNLYRVGQDCAE-------SYGRRVRTFKVEILT-KN 386 (802)
Q Consensus 346 -~aR~GG~vF~~dGkLyRp~QdC~~-------~YG~~L~l~~It~Lt-~~ 386 (802)
..-.++.++..+|++|++.-.+.. ..-..+.+...+++. ++
T Consensus 247 ~~~v~~P~v~~~~G~yyl~Ys~~~~g~~~~~~~~~~~igvA~Sdd~~Gpw 296 (408)
T 3p2n_A 247 SHKVHDPCIIPYKGKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPY 296 (408)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCC
T ss_pred CCCeEcceEEEECCEEEEEEEcccCccccccCCCccEEEEEEECCCCCCc
Confidence 112467788889999987643321 111456677777654 53
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.2e-06 Score=92.52 Aligned_cols=125 Identities=18% Similarity=0.332 Sum_probs=88.8
Q ss_pred eeecCCCceeeeEEEEeCCEEEEEeCCCC----------------CCeeEEEEeccCCcCceeeeeccC-----------
Q 045656 233 IALDEDWHLSFPYVFDYHGQIYMMPESRA----------------KGEVRLYRAVNFPLEWKLEKIIMK----------- 285 (802)
Q Consensus 233 vvLde~~HLSyP~VF~~dG~iYMiPEss~----------------sg~l~LYra~~FP~~We~~~~Ll~----------- 285 (802)
+++... ..-.|.|++++|++||+..... ...+.+|++.++ ..|+.+...+.
T Consensus 15 Pi~~~~-~~~DP~i~~~~g~yYly~t~~~~~~~~~g~~~~~~~~~~~~i~i~~S~DL-v~W~~~g~v~~~~~~~~~~g~~ 92 (487)
T 3c7f_A 15 PLIDHH-LGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADM-VNWTDHGAIPVAGANGANGGRG 92 (487)
T ss_dssp SSCCSS-CCEEEEEEEETTEEEEEEECCCCEECTTSCEECCCSTTCCSEEEEEESSS-SSEEEEEEECCBCSTTGGGGTC
T ss_pred CccCCC-cCCCCCeEEECCEEEEEEcCCcccccccccccccccccccceEEEECCCC-cCcEEccccccCCccccccccc
Confidence 445432 3578999999999999975421 367899999986 78998764221
Q ss_pred -----CCccCCEEEEE--C--CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCC--ccc--CCc
Q 045656 286 -----KPLVDPFMINH--D--GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLG--ARN--GGR 352 (802)
Q Consensus 286 -----~~~vDatI~~~--d--G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~--aR~--GG~ 352 (802)
..+..|+|+++ + |+|||+++.. ...+.+++|++|.|||+.+...|++....... ..+ -+.
T Consensus 93 ~~~w~~~~WAP~v~~~~~~g~g~yylyyt~~-------~~~i~va~s~~p~Gpw~~~~g~pli~~~~~g~~~~~~~iDp~ 165 (487)
T 3c7f_A 93 IAKWAGASWAPSIAVKKINGKDKFFLYFANS-------GGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPA 165 (487)
T ss_dssp SBTTCSCCEEEEEEEEEETTEEEEEEEEEST-------TBCEEEEEESSTTCCCBCSSSSCSBCTTSTTCTTCSSBCCCE
T ss_pred ccCccccCcchheEEEecCCCCeEEEEEEcC-------CcEEEEEEeCCCCCCcccCCCCeEeecCCCCccCCCCccCCc
Confidence 13678999988 4 6999999863 23689999999999999876678765321000 011 255
Q ss_pred cEEE-CCeEEEEccc
Q 045656 353 PFVY-DGNLYRVGQD 366 (802)
Q Consensus 353 vF~~-dGkLyRp~Qd 366 (802)
+|.+ ||+.|+..-.
T Consensus 166 vf~DddG~~Yl~~g~ 180 (487)
T 3c7f_A 166 VFVDDDGTGYLYAGG 180 (487)
T ss_dssp EEECTTSCEEEEEEC
T ss_pred eEEcCCCCEEEEECC
Confidence 6776 8999998754
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=92.57 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=104.3
Q ss_pred CCceeeCeee-EEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFF-YLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFl-l~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||-. +..+|+|||||--..+.. +.-.+++++|.| +.+|++++++|..+-
T Consensus 27 ~~gwmNDPNG~~y~~G~YHLFYQ~nP~~~~wg~~~WGHa~S~D-LvhW~~~p~AL~P~~--------------------- 84 (546)
T 3ugf_A 27 ERSWMSDPDGPIFYKGWYHFFYQYNPDNPVWGNNTWGHTVSRD-LIHWLYLPLALAADQ--------------------- 84 (546)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEESSCSSSCSCEEEEEEESS-SSSCEECCCCBCSCS---------------------
T ss_pred CCCCccCCceeEEECCEEEEEEecCCCCCCCCCcEEEEEEcCC-cCccccCCCCCCCCc---------------------
Confidence 4579999994 478999999997544433 234789999988 899999988775210
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEE-EEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC----CCCCeeCCC
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFM-INHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP----FGPWKPHKK 335 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI-~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp----lGPW~~hp~ 335 (802)
.|+ ...+...++ +..||+++||||.... .......+++|++. +..|++++.
T Consensus 85 ---------------~~D------~~G~~SGSavv~~dg~~~l~YTg~~~---~~~q~q~lA~S~D~~d~~l~~w~K~~~ 140 (546)
T 3ugf_A 85 ---------------WYD------MQGVFSGSATCLPDGRIMMLYTGVTK---EMVEMLSLAYPADLSDPLLVEWVKYPG 140 (546)
T ss_dssp ---------------GGG------TTCEEEEEEEECTTSCEEEEEEEECT---TCCEEEEEEEESCTTCTTCCCEEECTT
T ss_pred ---------------ccc------cCCcCcceEEEeeCCeEEEEEEeccC---CCcEEEEEEEECCCCCCccceeEEcCC
Confidence 011 112233333 4568999999997421 11224568888765 468999999
Q ss_pred CCeeeCCCCC---CcccCCcc-EE-ECCeEEEEcccCCCCCCceEEEEEeccCCccceEEe
Q 045656 336 NPIYNGDKSL---GARNGGRP-FV-YDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKEL 391 (802)
Q Consensus 336 NPI~~~~~~~---~aR~GG~v-F~-~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~ 391 (802)
|||+..++.. ..| -..+ +. .+|++|++.-... .-...+.+|+.++|..|+|...
T Consensus 141 nPVi~~p~g~~~~~fR-DPkVvw~~~~g~w~MviGa~~-~~~G~vllY~S~DL~~W~~~~~ 199 (546)
T 3ugf_A 141 NPILSAPPGVSPTEFR-DASTGWYVSNGTWRIAIGAKY-NTTGIAMVYETKDFKSFKLLEE 199 (546)
T ss_dssp CCCBCCCTTSCTTSCC-CBCCCEECSTTCEEEEEEEEE-TTEEEEEEEEESSSSSCEECSS
T ss_pred CceEeCCCCCCcceee-ccceEeECCCCEEEEEEEEcc-CCcceEEEEECCCCCCceEccc
Confidence 9999743211 112 1343 33 4889988752211 2234577899999999988644
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.6e-05 Score=84.01 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=86.4
Q ss_pred ceeeCeeeEEE-CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--------C---ceee-------eEE
Q 045656 186 NFVADPFFYLQ-GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------W---HLSF-------PYV 246 (802)
Q Consensus 186 ~F~ADPFll~~-~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------~---HLSy-------P~V 246 (802)
.-+.||.+++. +++|||+|+.... ..+.|.+++|.| +.+|+..+.++... + -..| |.|
T Consensus 116 ~~~~DP~v~~~~dg~y~m~yt~~~~--~~~~i~la~S~D-l~~W~~~g~i~~~~~~~~~~~~~~k~~~l~p~~~~g~p~v 192 (356)
T 3taw_A 116 GGTEDPRIAMTEDGTYVLLYTQWNR--KVPRLAVATSKD-LKHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVI 192 (356)
T ss_dssp TEEEEEEEEECTTSCEEEEEEEECS--SCEEEEEEEESS-SSSCEEEEETTSSHHHHTTTTSCCCCEEEEEEEETTEEEE
T ss_pred CceECCEEEEECCCEEEEEEEEeCC--CCceEEEEECCC-CCCceEeeeEcCCccccccccccCCccEEeecccCCCceE
Confidence 35689999987 8899999998653 468999999877 89999999877531 1 1233 578
Q ss_pred EEeCCEEEEEeCCCCCCeeEEEEeccCCcCceee-------eeccCC--C------c-cCCEEEEECCEEEEEEeCC
Q 045656 247 FDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLE-------KIIMKK--P------L-VDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 247 F~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~-------~~Ll~~--~------~-vDatI~~~dG~wwLF~S~~ 307 (802)
.+++|++||+-- ...|-++++.+. ..|+.. +.++.. . + ..|.+++.++.|+|||...
T Consensus 193 ~k~~G~y~m~~g---~~~I~la~S~Dl-~~W~~~~~~~~~~~~~l~~~~~~wd~~~ig~gp~pI~t~~Gwll~YhGv 265 (356)
T 3taw_A 193 AKVNGKYFMYWG---EKNVYAATSDNL-IDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDGIVLLYNGK 265 (356)
T ss_dssp CCBTTBEEEEEC---SSSBEEEEESSS-SSCEECBCTTSSBCCSBCCCTTSSCSSEEEECSCEEEETTEEEEEEEEE
T ss_pred EEECCEEEEEeC---CceeeEEECCCc-ccCeeccccCCCcceEecCCCChheeccccCCCccEEECCcEEEEEecc
Confidence 999999999952 467889888775 589863 334432 1 2 4588899988899999754
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-05 Score=88.65 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=103.3
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAK 262 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~s 262 (802)
+..|+-||-.+ ..+|+|+|||--..+....|..++++|.| +.+|++++++|..+
T Consensus 9 ~~gwmNDPNG~~y~~G~YHlFYQ~~P~~~~~g~WgHa~S~D-LvhW~~~~~aL~P~------------------------ 63 (492)
T 4ffh_A 9 PSGWLCNPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTD-GVAFTHHGTVMPLR------------------------ 63 (492)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEESSTTCCCEEEEEEESS-SSSCEEEEEEECCB------------------------
T ss_pred CCCCeeCCeeeEEECCEEEEEEECCCCCCCCCcEEEEEeCC-CCccEECCCCCCCC------------------------
Confidence 45799999655 68999999997655444445599999988 99999999888621
Q ss_pred CeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CC-------EEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 263 GEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DG-------QYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 263 g~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG-------~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
. +..+...+++.. +| .++||||.... .........+++|++..-.|+++
T Consensus 64 -------------~--------~~g~~SGSav~~~~~~~g~~~~~~~l~YTg~~~-~~~~~q~q~lA~S~D~g~~w~k~- 120 (492)
T 4ffh_A 64 -------------P--------DFPVWSGSAVVDTANTAGFGAGAVVALATQPTD-GVRKYQEQYLYWSTDGGFTFTAL- 120 (492)
T ss_dssp -------------T--------TBCCCCEEEEEETTCSSSSCTTEEEEEEEEEGG-GCGGGEEEEEEEESSSSSSCEEC-
T ss_pred -------------C--------CCCEEeceEEEeCCCccccCCCcEEEEEeeccc-CCCCcEEEEEEEeCCCCceEEEc-
Confidence 0 011223333333 33 59999986421 00111245688888766699999
Q ss_pred CCCeeeCCCCCC------------cccCCccEEE--CCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 335 KNPIYNGDKSLG------------ARNGGRPFVY--DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 335 ~NPI~~~~~~~~------------aR~GG~vF~~--dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.|||+..+.... .| -..+|.. +|++|++. . + +..+.+++.++|..|+|....
T Consensus 121 ~nPvi~~p~~~~~~~~~~~~~~~~fR-DP~V~~~~~~g~w~mv~-a--~--~~~i~ly~S~DL~~W~~~~~~ 186 (492)
T 4ffh_A 121 PDPVIVNTDGRAATTPAEIENAEWFR-DPKIHWDTARGEWVCVI-G--R--LRYAAFYTSPNLRDWTLRRNF 186 (492)
T ss_dssp SSCSBCCTTTTTCCSHHHHHHHTCEE-EEEEEEETTTTEEEEEE-E--E--TTEEEEEEESSSSSCEECCCE
T ss_pred CccccCCCCccccccccccccCCCCc-CCEEEEECCCCEEEEEE-E--C--CCeEEEEECCCCCCceEeccc
Confidence 899997521110 11 2556664 68888876 1 1 359999999999999987654
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-05 Score=85.45 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCceeeCee-eEEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCC-----CceeeeEEEE-eCCEEE
Q 045656 184 PSNFVADPF-FYLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDED-----WHLSFPYVFD-YHGQIY 254 (802)
Q Consensus 184 ~~~F~ADPF-ll~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~-----~HLSyP~VF~-~dG~iY 254 (802)
+..|+-||- ++..+|+|||||--..+.. +.-.+++++|.| +.+|++++++|..+ ....-+-++. .||++|
T Consensus 48 ~~gwmNDPNG~~y~~G~YHlFYQ~~P~~~~wg~~~WgHa~S~D-LvhW~~~~~aL~P~~~~d~~g~~SGSav~~~dg~~~ 126 (526)
T 3pij_A 48 NGGWINDPNGLCFYKGRWHVFYQLHPYGTQWGPMHWGHVSSTD-MLNWKREPIMFAPSLEQEKDGVFSGSAVIDDNGDLR 126 (526)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETTCSSSCSBEEEEEEESS-SSSEEECCCCBCCCBGGGTTEEEEEEEEECTTSCEE
T ss_pred CcCCeeCCeEEEEECCEEEEEEEcCCCCCCcCCcEEEEEEeCC-CCCceeCeeccCCCCccccCCeEeceEEEccCCEEE
Confidence 457999999 5588999999997544433 234689999988 99999999988542 3345566665 567888
Q ss_pred EEeCCC--------CC---CeeEEEEeccCC-cCceeeeeccCCC-------ccCCEEEEECCEEEEEEeCCCCCCCCCC
Q 045656 255 MMPESR--------AK---GEVRLYRAVNFP-LEWKLEKIIMKKP-------LVDPFMINHDGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 255 MiPEss--------~s---g~l~LYra~~FP-~~We~~~~Ll~~~-------~vDatI~~~dG~wwLF~S~~~~~g~~~n 315 (802)
|+--+. .. ..+.|-...+.- ..|++...++.++ .-||.+++.+|+|||+..... ....
T Consensus 127 l~YTg~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~pvi~~P~~~~~~~fRDP~V~~~~g~w~mv~ga~~---~~~~ 203 (526)
T 3pij_A 127 FYYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWKTGDTWYMTFGVSS---ADKR 203 (526)
T ss_dssp EEEEEEEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEEEEECCCGGGEEEEEEEEEEEEETTEEEEEEEEEE---TTSC
T ss_pred EEEecccCcccccCCCCceeEEEEEEECCCCcceEEECCccccCCCCccccccccCEEEEECCEEEEEEEEec---CCCC
Confidence 883221 11 234444444432 5898766556544 479999999999999964210 1123
Q ss_pred CcEEEEEEcCCCCCCeeCC
Q 045656 316 GQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp 334 (802)
+.+.+|.|+++. .|+...
T Consensus 204 G~i~ly~S~Dl~-~W~~~g 221 (526)
T 3pij_A 204 GQMWLFSSKDMV-RWEYER 221 (526)
T ss_dssp EEEEEEEESSSS-SCEEEE
T ss_pred cEEEEEECCCCC-cceEcC
Confidence 468899988764 798653
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00073 Score=74.15 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred eeeCeeeEEE-CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC----C-ce--eeeEE-----------E
Q 045656 187 FVADPFFYLQ-GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED----W-HL--SFPYV-----------F 247 (802)
Q Consensus 187 F~ADPFll~~-~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~----~-HL--SyP~V-----------F 247 (802)
-+.||.++.. +|+|||||+.++. ..+.|++|+|.| +.+|+..+.++... + .+ -.+-| -
T Consensus 120 gv~DP~v~~~edG~yym~Yta~~~--~~~~i~lA~S~D-l~~W~k~g~i~~p~~~g~f~~~~~kd~~i~~~~r~~~lfp~ 196 (364)
T 3qc2_A 120 GCEDPRIAVTDDGLYVMMYTQWNR--HVPRLAVATSRN-LKDWTKHGPAFAKAFDGKFFNLGCKSGSILTEVVKGKQVIK 196 (364)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECS--SCEEEEEEEESS-SSSCEEEEETTSSHHHHTTTTCCCCCEEEEEEEETTEEEEC
T ss_pred cEECCEEEEeCCCEEEEEEEecCC--CCeEEEEEEECC-CCEEEEeeeccCccccccccccccccceeeeeccccceeeE
Confidence 4689999984 8999999999754 467999999877 99999999877541 1 11 22333 3
Q ss_pred EeCCEEEEEeCCCCCCeeEEEEeccCCcCcee-------eeeccCC-------C-c-cCCEEEEECCEEEEEEeCCCCCC
Q 045656 248 DYHGQIYMMPESRAKGEVRLYRAVNFPLEWKL-------EKIIMKK-------P-L-VDPFMINHDGQYWLFGSDHSGFG 311 (802)
Q Consensus 248 ~~dG~iYMiPEss~sg~l~LYra~~FP~~We~-------~~~Ll~~-------~-~-vDatI~~~dG~wwLF~S~~~~~g 311 (802)
+.+|++||+- ....|-|++..+. ..|+. +..++.. . + ..|.+++.+..|.|||.......
T Consensus 197 ki~GkY~M~~---g~~~I~la~S~Dl-~~W~~~~~~~g~~~~~~~~~~~~wds~~ig~gp~pI~t~~GwLl~YhGv~~~~ 272 (364)
T 3qc2_A 197 KVNGKYFMYW---GEEHVFAATSDDL-IHWTPIVNIDGSLKKLFSPRDGYFDSHLTECGPPAIYTPKGIVLLYNGKNHSG 272 (364)
T ss_dssp EETTEEEEEE---CSSSBEEEEESSS-SSEEECBCTTSCBCCSBCCCTTSSSSSEEEECSCEEEETTEEEEEEEEECCTT
T ss_pred EECCEEEEEE---cCCeEEEEeCCCc-ccceEccccCCCeeeeccCCCChHhhcccccCCCcEEcCCCEEEEEecccccc
Confidence 7899999995 2477888887664 68975 2233321 1 2 45788889888999997532210
Q ss_pred --C----CCCCcEEEEEEcCCCCCCee--CCCCCeeeCCCCCCcccCC----ccEE-----ECCeEEEEcc
Q 045656 312 --T----TQNGQLEIWYSSSPFGPWKP--HKKNPIYNGDKSLGARNGG----RPFV-----YDGNLYRVGQ 365 (802)
Q Consensus 312 --~----~~n~~L~i~~AdSplGPW~~--hp~NPI~~~~~~~~aR~GG----~vF~-----~dGkLyRp~Q 365 (802)
. ...+.++.+.- ++..|++- -...|++.-. ...-|.|- -+|. .+|+++...-
T Consensus 273 ~~~~~~~~~~Y~~g~~ll-D~~dP~kvi~r~~~p~l~P~-~~~E~~G~yv~nVvF~~G~~~~~~~~~iyYG 341 (364)
T 3qc2_A 273 RGDKRYTANVYAAGQALF-DANDPTRFITRLDEPFFRPM-DSFEKSGQYVDGTVFIEGMVYFKNKWYLYYG 341 (364)
T ss_dssp TSCTTSCTTCEEEEEEEE-CSSCTTCEEEECSSCSBCCC-SGGGCCSSSTTCCEEEEEEEEETTEEEEEEE
T ss_pred cccccccCceEEEEEEEE-cCCCCceeEEcCCCceEcCC-CccccCCCCcCCEEEeCCcEeeCCEEEEEEe
Confidence 0 11234444432 34556643 2346766532 12334442 2232 3677766543
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00019 Score=82.32 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=87.0
Q ss_pred eeeEE-ECCEEEEEEEeeecc-----CC--CceEEEEEEeCCC-CCceEeeeeecCC-----CceeeeEEEEeCCEEEEE
Q 045656 191 PFFYL-QGNDLYLFYETKNSI-----TM--QGDIGVAKSVDKG-ATWQQLGIALDED-----WHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 191 PFll~-~~g~~ylF~E~~~~~-----~~--~G~I~va~S~D~g-~tw~~~gvvLde~-----~HLSyP~VF~~dG~iYMi 256 (802)
+-.+. .+|+++|||+..... .. .-.+.+|.|.|.+ .+|+..++|+..| .|+-.|+||..+|++||+
T Consensus 115 GSav~~~dg~~~l~YTg~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~pvi~~P~~~~~~~fRDP~V~~~~g~w~mv 194 (526)
T 3pij_A 115 GSAVIDDNGDLRFYYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWKTGDTWYMT 194 (526)
T ss_dssp EEEEECTTSCEEEEEEEEEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEEEEECCCGGGEEEEEEEEEEEEETTEEEEE
T ss_pred ceEEEccCCEEEEEEecccCcccccCCCCceeEEEEEEECCCCcceEEECCccccCCCCccccccccCEEEEECCEEEEE
Confidence 44454 467999999986432 11 1357889998866 8999888888765 478899999999999999
Q ss_pred e---CCCCCCeeEEEEeccCCcCceeeeeccCC------CccCCEEEEECC-----EEEEEEeC
Q 045656 257 P---ESRAKGEVRLYRAVNFPLEWKLEKIIMKK------PLVDPFMINHDG-----QYWLFGSD 306 (802)
Q Consensus 257 P---Ess~sg~l~LYra~~FP~~We~~~~Ll~~------~~vDatI~~~dG-----~wwLF~S~ 306 (802)
= .....|.+.||+..++ ..|+....|+.. ..+=|-+|+.+| +|.|++|.
T Consensus 195 ~ga~~~~~~G~i~ly~S~Dl-~~W~~~g~l~~~~~~~g~mwECPdlf~l~~~~g~~k~vL~~s~ 257 (526)
T 3pij_A 195 FGVSSADKRGQMWLFSSKDM-VRWEYERVLFQHPDPDVFMLECPDFSPIKDKDGNEKWVIGFSA 257 (526)
T ss_dssp EEEEETTSCEEEEEEEESSS-SSCEEEEEEEECSCTTCCEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEecCCCCcEEEEEECCCC-CcceEcCcccccCCCccCeEECCEEEEECCCCCceeEEEEEec
Confidence 3 2234578999999887 789998775321 256778898888 99998874
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00045 Score=78.99 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCceeeCeeeEEE---CCEEEEEEEeeeccCCCc---eEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe
Q 045656 184 PSNFVADPFFYLQ---GNDLYLFYETKNSITMQG---DIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP 257 (802)
Q Consensus 184 ~~~F~ADPFll~~---~g~~ylF~E~~~~~~~~G---~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP 257 (802)
+..|+-||-.+.+ +|+|||||--..+...-| ..++++|.| +.+|++++++|..+.
T Consensus 18 ~~gwmNDPNG~~y~~~~G~YHlFYQ~nP~~~~wg~~~~WGHa~S~D-LvhW~~~~~aL~P~~------------------ 78 (509)
T 3kf3_A 18 EKGWMNDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSND-LVHWDEHEIAIGPEH------------------ 78 (509)
T ss_dssp SSEEEEEEEEEEEETTTTEEEEEEEEETTCSSCCSSBEEEEEEESS-SSSCEECSCCBCCSS------------------
T ss_pred CcCCeeCCcceEEeCCCCEEEEEEecCCCCCCCCCcCEEEEEEccC-CCCcEECcccccccc------------------
Confidence 4579999997644 489999997544443333 589999988 999999998885220
Q ss_pred CCCCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCC
Q 045656 258 ESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNP 337 (802)
Q Consensus 258 Ess~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NP 337 (802)
.... +|--......- .+ .+-..+ -..-+|+++||||... .......+++|++....|++++.||
T Consensus 79 ---d~~G--~~SGSav~d~~---~t--~g~~~~--~~~p~~~l~~~YTg~~----~~~q~q~lA~S~D~g~~~~k~~~nP 142 (509)
T 3kf3_A 79 ---DNEG--IFSGSIVVDHN---NT--SGFFNS--SIDPNQRIVAIYTNNI----PDNQTQDIAFSLDGGYTFTKYENNP 142 (509)
T ss_dssp ---TTCE--EEEEEEEECTT---CT--TSCCCT--TSCGGGCEEEEEEEEE----TTEEEEEEEEESSSSSSCEECTTCC
T ss_pred ---cCCC--EEeceEEEeCC---cc--cccccc--ccCCCCceEEEECCCC----CCCeeEEEEEECCCCcceEEcCCCc
Confidence 0000 11100000000 00 000000 0012468899998631 1122466888887766999999999
Q ss_pred eeeCCCCCCcccCCccEEE--CCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 338 IYNGDKSLGARNGGRPFVY--DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 338 I~~~~~~~~aR~GG~vF~~--dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
|+... ....| -..+|.+ +|++|++.-... ...+.+++.++|..|+|....
T Consensus 143 Vi~~~-~~~fR-DPkVfw~~~~g~w~Mv~g~~~---~g~i~ly~S~DL~~W~~~~~~ 194 (509)
T 3kf3_A 143 VIDVS-SNQFR-DPKVFWHEDSNQWIMVVSKSQ---EYKIQIFGSANLKNWVLNSNF 194 (509)
T ss_dssp SBCCS-CSSCE-EEEEEEETTTTEEEEEEEEGG---GTEEEEEEESSSSSCEEEEEE
T ss_pred eEcCC-CCccc-CCeEEEECCCCEEEEEEEECC---CCEEEEEECCCCCCceEcccc
Confidence 98642 11223 2556654 478888653211 236999999999999998665
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=75.99 Aligned_cols=145 Identities=8% Similarity=0.037 Sum_probs=88.1
Q ss_pred eeeecCCCceeeeEEEEeCCEEEEEeCCCC-CCeeEEEEeccCCcCceeee---eccC-------CCccCCEEEEECCEE
Q 045656 232 GIALDEDWHLSFPYVFDYHGQIYMMPESRA-KGEVRLYRAVNFPLEWKLEK---IIMK-------KPLVDPFMINHDGQY 300 (802)
Q Consensus 232 gvvLde~~HLSyP~VF~~dG~iYMiPEss~-sg~l~LYra~~FP~~We~~~---~Ll~-------~~~vDatI~~~dG~w 300 (802)
.+||. . ...|.|+++++.+||+.-+.. ...+.+|++.++ ..|+... ++.. +.+..|.|++++|+|
T Consensus 11 NPii~-~--~aDP~ii~~~d~yY~~~st~~~~~g~~i~~S~DL-~~w~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~y 86 (330)
T 3k1u_A 11 NPIII-Q--RADPMIYKHNDGYYYFTASVPEYDRIEVRKAKTI-EGLRNAEPVDVWRRHESGEMSNLIWAPEIHFINGAW 86 (330)
T ss_dssp SCSBT-T--CEEEEEEECTTSCEEEEEECTTCCEEEEEEESST-GGGTTSCCEEEEECCSSSTTSEEEEEEEEEEETTEE
T ss_pred CCCCC-C--CCCCEEEEECCEEEEEEeccCCCCCEEEEEcCCc-CCccCCcceeecccCCCCccCCCeECCEEEEECCeE
Confidence 45663 2 489999999999999976543 468999999886 5687532 1111 137899999999999
Q ss_pred EEEEeCCCCCCCC--CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc--CCccEEECCeEEEEcccCC--CCCCce
Q 045656 301 WLFGSDHSGFGTT--QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN--GGRPFVYDGNLYRVGQDCA--ESYGRR 374 (802)
Q Consensus 301 wLF~S~~~~~g~~--~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~--GG~vF~~dGkLyRp~QdC~--~~YG~~ 374 (802)
||++|....-... ......+.+++++.|||+..-..|...... ...+ -+.+|.+||+.|+..-... ...+.+
T Consensus 87 ylyys~~~~~~~~~~~~~~~~~~~~~~~~gP~~~~~~~~~~~~~~--~~~~~IDp~vf~Ddd~~~~~~~~~~~~~~~~~~ 164 (330)
T 3k1u_A 87 YIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKTA--WESFSLDATIFEHNEKLYYVWAQQDINIKGHSN 164 (330)
T ss_dssp EEEEEEESSSCCBTTBCCCEEEEEEECSSSTTSSCCEEEEECCCS--SCSCEEEEEEEEETTEEEEEEEECCTTSSSSBE
T ss_pred EEEEEeccCCCCCCcccceeeeEEEeCCCCCccccccccccccCC--CCCCccCceEEEECCccEEEEeecCCCcCCCce
Confidence 9999853211111 111234566777777765322222222110 0111 1567888777666543322 234567
Q ss_pred EEEEEecc
Q 045656 375 VRTFKVEI 382 (802)
Q Consensus 375 L~l~~It~ 382 (802)
|.+.|+++
T Consensus 165 i~i~~l~~ 172 (330)
T 3k1u_A 165 IYIAEMEN 172 (330)
T ss_dssp EEEEEEEE
T ss_pred EEEEECCC
Confidence 88888864
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0011 Score=75.70 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=80.8
Q ss_pred EEEEEEEeeeccC-----------CCceEEEEEEeCCCCCceEe---eeeecCC--------CceeeeEEEEeC--CEEE
Q 045656 199 DLYLFYETKNSIT-----------MQGDIGVAKSVDKGATWQQL---GIALDED--------WHLSFPYVFDYH--GQIY 254 (802)
Q Consensus 199 ~~ylF~E~~~~~~-----------~~G~I~va~S~D~g~tw~~~---gvvLde~--------~HLSyP~VF~~d--G~iY 254 (802)
+++|||+...... ..-.+++|.|.|.+.+|+.. ++||..+ .|+-.|.||.++ |++|
T Consensus 104 ~~~l~YTg~~~~~~~~~~~~~~~~~~q~q~lA~s~D~g~~w~k~~~~~pvi~~~~~~y~~~~~~fRDP~V~~~~~~g~w~ 183 (518)
T 1y4w_A 104 PLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWV 183 (518)
T ss_dssp CEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEETTTTEEE
T ss_pred cEEEEEeeeeccccccccccccccceeEEEEEEEcCCCceEEEcCCCCCeEecCCcccccCCCCcCCCcEeEECCCCcEE
Confidence 8999999865321 13578889998888999987 6777542 688999999874 8999
Q ss_pred EEeCCCCCCeeEEEEeccCCcCceeeeeccC-----CCccCCEEEEE--C----CEEEEEEeCC
Q 045656 255 MMPESRAKGEVRLYRAVNFPLEWKLEKIIMK-----KPLVDPFMINH--D----GQYWLFGSDH 307 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~We~~~~Ll~-----~~~vDatI~~~--d----G~wwLF~S~~ 307 (802)
|+--..+...+.||+..++ .+|+....+.. ...+=|-+|+. + ++|+|++|..
T Consensus 184 mv~~~g~~~~i~ly~S~DL-~~W~~~~~~~~~~~~~~mwECPdlf~l~~~g~~~~k~vL~~s~~ 246 (518)
T 1y4w_A 184 VVTSIAELHKLAIYTSDNL-KDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSGLN 246 (518)
T ss_dssp EEEEEGGGTEEEEEEESSS-SSCEEEEEECCCSCCSSEEEEEEEEEEEBTTSSCEEEEEEEEEE
T ss_pred EEEEecCCCeEEEEECCCC-CCCeECccccccCCCCCeEECCeEEEeecCCCCceeEEEEeccC
Confidence 9932223357999999887 78998876542 12566888888 4 5899999863
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=84.97 Aligned_cols=163 Identities=10% Similarity=0.008 Sum_probs=100.9
Q ss_pred CCCceeeCeeeE-E--ECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe----eeeecCCCceeeeEEEEeCCEEEE
Q 045656 183 FPSNFVADPFFY-L--QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL----GIALDEDWHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 183 ~~~~F~ADPFll-~--~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~----gvvLde~~HLSyP~VF~~dG~iYM 255 (802)
.+..|+-||-.+ . .+|+|+|||-- + ..| .++++|.| +.+|+++ +++|..+-
T Consensus 34 p~~gwmNDPnG~~yD~~~G~YHlFYQ~-~---P~g-WgHa~S~D-LvhW~~~~~~~~~aL~P~~---------------- 91 (634)
T 3lig_A 34 PAEGQIGDPCAHYTDPSTGLFHVGFLH-D---GDG-IAGATTAN-LATYTDTSDNGSFLIQPGG---------------- 91 (634)
T ss_dssp CSSEEEEEECCCEECTTTCCEEEEEEE-T---TSC-EEEEEESS-SSCCEESCSTTCEEECSCS----------------
T ss_pred CCCCcccCCccceEeCCCCEEEEEEec-C---CCc-eeEEEecC-cCceeECcCCCCceecCCC----------------
Confidence 356799999866 4 58999999964 2 234 99999988 9999998 66664210
Q ss_pred EeCCCCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE-ECCEEEEEEeCCCCCC-----C-CCC-CcEEEEEEcCCC
Q 045656 256 MPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN-HDGQYWLFGSDHSGFG-----T-TQN-GQLEIWYSSSPF 327 (802)
Q Consensus 256 iPEss~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~-~dG~wwLF~S~~~~~g-----~-~~n-~~L~i~~AdSpl 327 (802)
..... -+|- .+++.. .+|+.+||||...... . ... ....+++|++..
T Consensus 92 ---~~D~~--G~~S--------------------GSav~~~~~g~~~~~YTg~~~~~~~~~~~~~~~~q~Q~lA~S~D~g 146 (634)
T 3lig_A 92 ---KNDPV--AVFD--------------------GAVIPVGVNNTPTLLYTSVSFLPIHWSIPYTRGSETQSLAVARDGG 146 (634)
T ss_dssp ---SSCSS--EEEE--------------------EEEESSCGGGSCEEEEEEECSCCCCTTSCCCTTSEEEEEEEEEGGG
T ss_pred ---CCCCC--CcEe--------------------eEEEEECCCCEEEEEEEecccccccccCcCCCCcEEEEEEEECCCC
Confidence 00000 0111 111111 2788999998642110 0 011 135678887655
Q ss_pred CCCeeCCCCCeeeCCCCCCcccC---CccEE------------------------------ECCeEEEEcccCCCCCCce
Q 045656 328 GPWKPHKKNPIYNGDKSLGARNG---GRPFV------------------------------YDGNLYRVGQDCAESYGRR 374 (802)
Q Consensus 328 GPW~~hp~NPI~~~~~~~~aR~G---G~vF~------------------------------~dGkLyRp~QdC~~~YG~~ 374 (802)
-.|++++.|||+...+......+ ..||. .+|++|++.--....-|..
T Consensus 147 ~~w~K~~~nPVi~~~p~g~~~~~fRDPkV~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ymvlg~~~~~~~g~ 226 (634)
T 3lig_A 147 RRFDKLDQGPVIADHPFAVDVTAFRAPFVFRSARLDVLLSLDEEVARNETAVQQAVDGWTEKNAPWYVAVSGGVHGVGPA 226 (634)
T ss_dssp TEEEECSSSCSBCSSSTTCCEEEEEEEEEECCHHHHHHHHSCTTTTTSHHHHHHHHHTCCGGGCCCEEEEEEEETTTEEE
T ss_pred CEEEECCCCceEcCCCcccCCCccCCCeEccccCccccccccccccccccccccccccccCCCCeEEEEEEEecCCCCCE
Confidence 58999999999975321000011 34566 4688888764434456788
Q ss_pred EEEEE--ecc---CCccceEEec
Q 045656 375 VRTFK--VEI---LTKNEYKELE 392 (802)
Q Consensus 375 L~l~~--It~---Lt~~~y~E~~ 392 (802)
|.||+ .++ |..|+|.-..
T Consensus 227 v~lY~~~s~dd~~l~~W~~~g~l 249 (634)
T 3lig_A 227 QFLYRQNGGNASEFQYWEYLGEW 249 (634)
T ss_dssp EEEEEEGGGCTTCCSCEEEEEEE
T ss_pred EEEEEeCCCCccccCCceEeccc
Confidence 99999 456 9999998554
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0024 Score=72.54 Aligned_cols=194 Identities=11% Similarity=0.184 Sum_probs=118.9
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEE--------CCEEEEEEEeeecc--------CCCceEEEEEEeCC-------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQ--------GNDLYLFYETKNSI--------TMQGDIGVAKSVDK------- 224 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~--------~g~~ylF~E~~~~~--------~~~G~I~va~S~D~------- 224 (802)
.+-|.|+. +..++. +..|+=|.-.+.. +|..+||+=.-+.. ....+|+.+.+.|.
T Consensus 54 ~t~p~i~~-~~~~~~-~d~wVWDsWPl~D~dg~~v~~~G~~~vF~L~a~r~~~~~~~drH~~a~I~~~yskdg~~~~~~~ 131 (493)
T 1w18_A 54 LTMPNIPA-DFPVIN-PDVWVWDTWTLIDKHADQFSYNGWEVIFCLTADPNAGYGFDDRHVHARIGFFYRRAGIPASRRP 131 (493)
T ss_dssp GBCCCCCT-TCCCSC-TTCEEEEEEEEECTTCCBEEETTEEEEEEEEECTTSSCCGGGCGGGCEEEEEEEESSCCGGGSC
T ss_pred hcCCcccc-Cccccc-CCcceEcCeeEECCCCCEEEECCeEEEEEEecCCccCCCccCCCccceeeeEEecCcccccccc
Confidence 35566643 333322 3457777777754 34456666543222 22457999998873
Q ss_pred -CCCceEeeeeecCC-------------CceeeeEEEE---eCCEEEEEeCC-----CCCC------eeEEEEec-----
Q 045656 225 -GATWQQLGIALDED-------------WHLSFPYVFD---YHGQIYMMPES-----RAKG------EVRLYRAV----- 271 (802)
Q Consensus 225 -g~tw~~~gvvLde~-------------~HLSyP~VF~---~dG~iYMiPEs-----s~sg------~l~LYra~----- 271 (802)
..+|++.|.||.+. .+.|-+-++. .||++||+--. ...+ ..+|-.++
T Consensus 132 ~l~~W~~~G~vf~~g~~~~~~~~~~~d~~~~WSGSAi~~~~~dG~i~LFYTg~~~~~~~~g~~~~~~~Q~Ia~a~~~l~a 211 (493)
T 1w18_A 132 VNGGWTYGGHLFPDGASAQVYAGQTYTNQAEWSGSSRLMQIHGNTVSVFYTDVAFNRDANANNITPPQAIITQTLGRIHA 211 (493)
T ss_dssp TTCCCEEEEESSCTTGGGGGSTTSCCSEEEEEEEEEEESSTTSCEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEE
T ss_pred ccCCceECCccccCCCccccccccccCcCCeEcCceEEeccCCCEEEEEEEecccccccccccCCcceeEEEEeccceec
Confidence 57899999988441 4688999987 79999999321 1111 34554322
Q ss_pred cCC----cCceeeeeccCC--------------CccCCEEEEEC---CEEEEEEeCCCCCCC------------------
Q 045656 272 NFP----LEWKLEKIIMKK--------------PLVDPFMINHD---GQYWLFGSDHSGFGT------------------ 312 (802)
Q Consensus 272 ~FP----~~We~~~~Ll~~--------------~~vDatI~~~d---G~wwLF~S~~~~~g~------------------ 312 (802)
+-+ .+|+.+..+++. .+-||.+|+.+ |++||+...+...+.
T Consensus 212 ~~dgv~~~~w~k~~~l~~~DG~~Yqt~~q~~~~~fRDP~vf~D~~~dG~~YmvFeant~~~~g~~~~~~~~~~y~~~~~~ 291 (493)
T 1w18_A 212 DFNHVWFTGFTAHTPLLQPDGVLYQNGAQNEFFNFRDPFTFEDPKHPGVNYMVFEGNTAGQRGVANCTEADLGFRPNDPN 291 (493)
T ss_dssp CSSCEEEEEEEEEEEEECCCSSSBCCTTTCTTCCCEEEEEEECTTSTTCEEEEEEEEBSSCTTCCCCCHHHHCCCTTCTT
T ss_pred cCCCccccccccCCceeecCccccccccccCCccccCCEEEecCCCCCCEEEEEEeccCCCCcccccccccccccCCccc
Confidence 111 358877655432 47899999874 888877754321110
Q ss_pred -------------CCCCcEEEEEEcCC-CCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcc
Q 045656 313 -------------TQNGQLEIWYSSSP-FGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQ 365 (802)
Q Consensus 313 -------------~~n~~L~i~~AdSp-lGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Q 365 (802)
..++.++++.+++. +-.|+..+ |++........-....+|+.+|++|+++=
T Consensus 292 ~~~~~~~~~~~a~~~~g~IGLa~~~s~Dl~~We~~~--PL~~a~~v~deiErP~V~~~~GkyYLFtS 356 (493)
T 1w18_A 292 AETLQEVLDSGAYYQKANIGLAIATDSTLSKWKFLS--PLISANCVNDQTERPQVYLHNGKYYIFTI 356 (493)
T ss_dssp CCCHHHHHHTTGGGCCEEEEEEEESSTTSCCEEEEE--EEEECTTTBSCCEEEEEEEETTEEEEEEE
T ss_pred cchhhhcccccchhccceEEEEEeCCCCCccceecC--ccccCCCCCCcEECCeEEEECCEEEEEEE
Confidence 02457888888766 56798543 76654322223455788999999999765
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0019 Score=73.91 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=92.2
Q ss_pred CceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCc--eeeeEEEEeCC--------
Q 045656 185 SNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWH--LSFPYVFDYHG-------- 251 (802)
Q Consensus 185 ~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~H--LSyP~VF~~dG-------- 251 (802)
..|+-||-.+ ..+|+|||||--..+... .-..++++|.| +.+|++++++|....- ..-.-++..++
T Consensus 38 ~gwmNDPNG~~y~~G~YHlFYQ~~P~~~~wg~~~WgHa~S~D-LvhW~~~~~aL~d~~g~~~~SGSav~~~~~~~g~~~~ 116 (516)
T 3sc7_X 38 QYWMNEPNGLIKIGSTWHLFFQHNPTANVWGNICWGHATSTD-LMHWAHKPTAIADENGVEAFTGTAYYDPNNTSGLGDS 116 (516)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEETTCSTTCCCEEEEEEESS-SSSCEEEEEEECCBTTEEEEEEEEEECTTCTTSSSCS
T ss_pred cCCcCCCeeeEEECCEEEEEEeCCCCCCccCCCEEEEEEeCC-CCcceecCccccCCCCceeEeceEEEeCCcccccccC
Confidence 4699999854 789999999975444332 34678999988 9999999999943222 24455555544
Q ss_pred ---EEEEEeCC----CCCCeeEEEEeccCCcCceeee--eccCC------------CccCCEEEEE--CCEEEEEEeCCC
Q 045656 252 ---QIYMMPES----RAKGEVRLYRAVNFPLEWKLEK--IIMKK------------PLVDPFMINH--DGQYWLFGSDHS 308 (802)
Q Consensus 252 ---~iYMiPEs----s~sg~l~LYra~~FP~~We~~~--~Ll~~------------~~vDatI~~~--dG~wwLF~S~~~ 308 (802)
.+||+--. .....++|-...+.-..|++.. .++.. ..-||.++++ +|+|||+....
T Consensus 117 ~~~~l~l~YTg~~~~~~~q~q~lA~s~D~g~~w~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~~~~g~w~mv~g~~- 195 (516)
T 3sc7_X 117 ANPPYLAWFTGYTTSSQTQDQRLAFSVDNGATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNWIMVLAHG- 195 (516)
T ss_dssp SSCCEEEEEEEEETTTTEEEEEEEEESSTTSCCEECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEETTTTEEEEEEECB-
T ss_pred CCCeEEEEEeeeeCCCCceEEEEEEecCCCceEEEcCCCceEcCCCcccccccCCCcccCCeEEEECCCCeEEEEEEEC-
Confidence 47766321 1223345544444435788642 12321 2489999998 48999998531
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
..+.+.+|.|+++ -.|+...
T Consensus 196 -----~~~~i~ly~S~DL-~~W~~~~ 215 (516)
T 3sc7_X 196 -----GQDKLSFWTSADT-INWTWQS 215 (516)
T ss_dssp -----TTCEEEEEEESSS-SSCEEEE
T ss_pred -----CCCEEEEEECCCC-CCceEcc
Confidence 2346889998865 4798653
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0039 Score=71.38 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=80.4
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCCCCceEe--eeeecCC----------CceeeeEEEEeC--CEEEEEeCCCCCCe
Q 045656 199 DLYLFYETKNSITMQGDIGVAKSVDKGATWQQL--GIALDED----------WHLSFPYVFDYH--GQIYMMPESRAKGE 264 (802)
Q Consensus 199 ~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~--gvvLde~----------~HLSyP~VF~~d--G~iYMiPEss~sg~ 264 (802)
++++||+........-.+.+|.|.|.+.+|+.. .+||..+ .|+-.|.||.++ |++||+=-....+.
T Consensus 120 ~l~l~YTg~~~~~~~q~q~lA~s~D~g~~w~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~~~~g~w~mv~g~~~~~~ 199 (516)
T 3sc7_X 120 PYLAWFTGYTTSSQTQDQRLAFSVDNGATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNWIMVLAHGGQDK 199 (516)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEESSTTSCCEECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEETTTTEEEEEEECBTTCE
T ss_pred eEEEEEeeeeCCCCceEEEEEEecCCCceEEEcCCCceEcCCCcccccccCCCcccCCeEEEECCCCeEEEEEEECCCCE
Confidence 599999986543334567889998888999875 3666431 367899999864 78999954345678
Q ss_pred eEEEEeccCCcCceeeeeccC----C------CccCCEEEEE------CCEEEEEEeCC
Q 045656 265 VRLYRAVNFPLEWKLEKIIMK----K------PLVDPFMINH------DGQYWLFGSDH 307 (802)
Q Consensus 265 l~LYra~~FP~~We~~~~Ll~----~------~~vDatI~~~------dG~wwLF~S~~ 307 (802)
+.||++.++ ..|+....+.. + ..+=|-+|+. +++|.|+.|..
T Consensus 200 i~ly~S~DL-~~W~~~~~l~~~~~~g~~~~~~mwECPdlf~l~~~g~~~~k~VL~~s~~ 257 (516)
T 3sc7_X 200 LSFWTSADT-INWTWQSDLKSTSINGLSSDITGWEVPDMFELPVEGTEETTWVVMMTPA 257 (516)
T ss_dssp EEEEEESSS-SSCEEEEEEEGGGSTTCCTTCCCBCCCEEEEEECSSSSCEEEEEEECCS
T ss_pred EEEEECCCC-CCceEcccccccCCCCcccccceEECCcEEEecccCCCCceEEEEECCC
Confidence 999999988 78998876442 1 3566778887 36899999864
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=73.16 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=81.2
Q ss_pred EEEEEEEeeec-cCCCceEEEEEEeCCCCCceEee-eeecC--CCc------------eeeeEEEEe--CCEEEEEeCCC
Q 045656 199 DLYLFYETKNS-ITMQGDIGVAKSVDKGATWQQLG-IALDE--DWH------------LSFPYVFDY--HGQIYMMPESR 260 (802)
Q Consensus 199 ~~ylF~E~~~~-~~~~G~I~va~S~D~g~tw~~~g-vvLde--~~H------------LSyP~VF~~--dG~iYMiPEss 260 (802)
++++||+.... ...+-.+++|.|.|.+.+|+..+ +||+. ..| +-.|.||.+ +|++||+= +
T Consensus 87 ~~~l~YTg~~~~~~~~q~q~lA~S~D~g~~w~k~~nPvi~~p~~~~~~~~~~~~~~~~fRDP~V~~~~~~g~w~mv~--a 164 (492)
T 4ffh_A 87 AVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVI--G 164 (492)
T ss_dssp EEEEEEEEEGGGCGGGEEEEEEEESSSSSSCEECSSCSBCCTTTTTCCSHHHHHHHTCEEEEEEEEETTTTEEEEEE--E
T ss_pred cEEEEEeecccCCCCcEEEEEEEeCCCCceEEEcCccccCCCCccccccccccccCCCCcCCEEEEECCCCEEEEEE--E
Confidence 59999998643 12345788899988789998864 67764 245 778999984 68999997 4
Q ss_pred CCCeeEEEEeccCCcCceeeeeccC-----CCccCCEEEEEC-----CEEEEEEeCC
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMK-----KPLVDPFMINHD-----GQYWLFGSDH 307 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~-----~~~vDatI~~~d-----G~wwLF~S~~ 307 (802)
+.+.+.||++.++ ..|+....+.. ...+=|-+|+.+ ++|.|+.|..
T Consensus 165 ~~~~i~ly~S~DL-~~W~~~~~~~~~~~~g~mwECPdlf~l~~~~~~~k~vL~~s~~ 220 (492)
T 4ffh_A 165 RLRYAAFYTSPNL-RDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMD 220 (492)
T ss_dssp ETTEEEEEEESSS-SSCEECCCEECSCGGGCCCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCeEEEEECCCC-CCceEeccccccCCccceEECCeEEEECCCCCCceEEEEEccC
Confidence 4579999999887 79998876543 236777888886 6999999863
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.027 Score=61.35 Aligned_cols=173 Identities=18% Similarity=0.336 Sum_probs=109.0
Q ss_pred eeeE-EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--Ccee-eeEEEEe--------CCEEEEE--
Q 045656 191 PFFY-LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--WHLS-FPYVFDY--------HGQIYMM-- 256 (802)
Q Consensus 191 PFll-~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--~HLS-yP~VF~~--------dG~iYMi-- 256 (802)
|=++ ..+|++.+++|.+........+.+.+|+|.|.+|+....+.+.. +.+. -|.+++. +|.+.+.
T Consensus 26 p~~v~L~dG~lLa~~~~~~~~~~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~~P~l~~lp~~v~~~~~G~ll~~~~ 105 (355)
T 3a72_A 26 PRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRYQPFLYSLPERVGSFKKGTLLLAGS 105 (355)
T ss_dssp EEEEECTTSCEEEEEEECCCSSSCCCEEEEEESSTTSCCEEEEEECCTTTSSCEEEEEEEEECSSCBTTBCTTCEEEEEE
T ss_pred ceEEEcCCCCEEEEEEeecCCCCCceEEEEEEcCCCcCcCCCcccCCCcCCcccccCCcEEecCcccccCCCCcEEEEEe
Confidence 3344 36889999999876544556788999999999999987766543 3455 6777764 5666655
Q ss_pred --eCCCCCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 257 --PESRAKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 257 --PEss~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
|+.....++.+|+.+|-=..|+....+.+. .+..|.+...+|+..+++++... +......+...+|+
T Consensus 106 ~~~~d~~~~~~~v~~S~D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP~~~~~~G~l~~~~~~~~~-~~~~~~~~~~~~S~ 184 (355)
T 3a72_A 106 SIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGKLICYYSDQRD-NATYGQTMVHQVTN 184 (355)
T ss_dssp ECCTTCCCEEEEEEEESSTTSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTEEEEEEEECCC-TTTCSCEEEEEEES
T ss_pred eecCCCCCceEEEEEECCCCccCccCccccccCccccccCCCccccceEEccCCeEEEEECCCCC-CCCCCcEEEEEECC
Confidence 222335688999999987889886553321 14456566779999999986421 11112245556666
Q ss_pred CCCCCCeeCCCCCeeeCCCCCCcccCCccE-EE-CCeEEEEcccCC
Q 045656 325 SPFGPWKPHKKNPIYNGDKSLGARNGGRPF-VY-DGNLYRVGQDCA 368 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~~~~~aR~GG~vF-~~-dGkLyRp~QdC~ 368 (802)
+ --.|.+.. ++.... ....|+|-..+ .. ||++++..-.|.
T Consensus 185 D-G~TWs~~~--~~~~~~-~~~~rpg~p~v~~l~dG~l~l~y~~~~ 226 (355)
T 3a72_A 185 D-LKNWGPVV--EDVTYP-TYTDRPGMPVVTKLPNGQYFYVYEYGS 226 (355)
T ss_dssp S-SSSCCCCE--EEECCS-STTCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred C-CCCCCCCe--eccccC-ccCCCCCceEEEECCCCCEEEEEEECC
Confidence 6 34796421 111111 12356663333 33 899988777664
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0055 Score=69.01 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=57.3
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccC----------------------------------------CCceEEEEEEeCCCC
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSIT----------------------------------------MQGDIGVAKSVDKGA 226 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~----------------------------------------~~G~I~va~S~D~g~ 226 (802)
-|-|||+++.+|++||.+|+..... .+|.|++++..++..
T Consensus 218 ~fRDP~Vf~d~G~~ymvfgA~t~~~~g~~~~~~l~~w~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~G~Igl~~~s~Dl~ 297 (447)
T 1oyg_A 218 TLRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYT 297 (447)
T ss_dssp CCEEEEEEEETTEEEEEEEEEBCTTSCCSSGGGGGBGGGTCSCHHHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECTTSS
T ss_pred ccCCCeEEeECCEEEEEEeeecCCCCcccchhhhcchhhcccCcccchhhhhhcccccccccchhcCcEEEEEEcCCCCC
Confidence 5799999999999999999975532 258999986556688
Q ss_pred CceEeeeeecC---CCceeeeEEEEeCCEEEEE
Q 045656 227 TWQQLGIALDE---DWHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 227 tw~~~gvvLde---~~HLSyP~VF~~dG~iYMi 256 (802)
.|+..++++.. ...+=-|.||+.+|++||+
T Consensus 298 ~W~~~~pL~~~~~v~d~~EcPdlfk~dGkyyLf 330 (447)
T 1oyg_A 298 LKKVMKPLIASNTVTDEIERANVFKMNGKWYLF 330 (447)
T ss_dssp EEEEEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred CceEccccccCCCCCCceEcCcEEEECCEEEEE
Confidence 99998887654 2356789999999999999
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.077 Score=58.10 Aligned_cols=233 Identities=13% Similarity=0.130 Sum_probs=129.9
Q ss_pred eCeeeEEE--------CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--------CceeeeEEEEeCCE
Q 045656 189 ADPFFYLQ--------GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------WHLSFPYVFDYHGQ 252 (802)
Q Consensus 189 ADPFll~~--------~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------~HLSyP~VF~~dG~ 252 (802)
.+|++++. ++++.+.+.........+.|.+..|+|+|.+|+....+.+.. ..++=|++...+|+
T Consensus 86 ~~P~l~~lP~~i~~~~~G~lL~~~~s~~~d~~~~~i~v~~S~D~G~TW~~~~~i~~g~~~~~~~g~~~v~eP~~~~~~G~ 165 (367)
T 2ydt_A 86 YQPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYKEK 165 (367)
T ss_dssp EEEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEESSSSSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTE
T ss_pred cCCeEEEccccccccCCCcEEEEEecccCCCCCCeEEEEEECCCCCCCcCCeecccCCCcccccCCCccccceEECCCCc
Confidence 47877743 677776665543322367899999999999999887544322 13566888888999
Q ss_pred EEEEe--CCC--CCC-eeEEEEeccCCcCceeeeeccCC-CccC----CEEEEE-CCEEEEEEeCCCCCC----CCCCCc
Q 045656 253 IYMMP--ESR--AKG-EVRLYRAVNFPLEWKLEKIIMKK-PLVD----PFMINH-DGQYWLFGSDHSGFG----TTQNGQ 317 (802)
Q Consensus 253 iYMiP--Ess--~sg-~l~LYra~~FP~~We~~~~Ll~~-~~vD----atI~~~-dG~wwLF~S~~~~~g----~~~n~~ 317 (802)
+.++- |.. ..+ .+.+-...| =..|......... ...+ +++++. ||+++|-|......+ ......
T Consensus 166 l~v~~~d~~~~~~~~q~l~~~~S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~~~y~~~~~~~~~~~~~~~~~ 244 (367)
T 2ydt_A 166 LILYYSDQRDNATHSQKLVHQTTTD-LKKWSKVVDDTKYANYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFP 244 (367)
T ss_dssp EEEEEEECCSTTTCSSEEEEEEESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEETCSCCCTTCSCCCB
T ss_pred EEEEECCCCCCCCCCcEEEEEECCC-CCCCCCceeccccCCcCCCCCcceEEECCCCcEEEEEEecCCCCcccccccccc
Confidence 88873 321 223 344445566 3779754432221 1111 345555 899988886521100 011245
Q ss_pred EEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEE-------ECCeEEEEcccCCCCCCceEEEEEeccCC---ccc
Q 045656 318 LEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFV-------YDGNLYRVGQDCAESYGRRVRTFKVEILT---KNE 387 (802)
Q Consensus 318 L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~-------~dGkLyRp~QdC~~~YG~~L~l~~It~Lt---~~~ 387 (802)
+.+..|++. ..|.+.+..+|.... ...+.|.++. .+|+|+.-..+ +..|. .-++.. +|+
T Consensus 245 ~~~~~S~DG-~tw~~~~~~~l~~~~---~~~~~~sp~v~~~p~~~~~g~l~~s~~~-----~~~v~--~~~~~g~~~~W~ 313 (367)
T 2ydt_A 245 VYYRLSKDP-QKFLNKAHHQIVSND---GTTPAGSPYVVWTPYGGKNGTIVVSCGT-----RSEIF--TNQALGDASAWK 313 (367)
T ss_dssp EEEEEESST-TCCTTSCCEECCCTT---CCCCBSSCEEEEESTTSTTCEEEEECSS-----CSCEE--EESSTTCTTCCE
T ss_pred eEEEEcCCc-cccCCcCCceeecCC---CcccCcCceEEECcCCCCCCeEEEEcCC-----CceEE--EECCCCCCCcce
Confidence 777777764 468765544454432 2335666554 25788877653 33343 333333 344
Q ss_pred eEEeccccCCCCCCccccccccCCCCCeEEEEeCcccCCCCcchhhhhhHH
Q 045656 388 YKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCA 438 (802)
Q Consensus 388 y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~~~~~~~~~~~~~ 438 (802)
..+.+...++. +.+++++-. ..+|.++.|-..+++.....+.++++
T Consensus 314 ~~~~~~~~~Ys-~~l~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~ 359 (367)
T 2ydt_A 314 KWDVPQPTAYT-RSLLTFQKD----PDLLMIMGAGILPPAGGKNTVSASVV 359 (367)
T ss_dssp EECCSSCCCTT-CEEEEETTE----EEEEEEEECCCSSCCTTCCCEEEEEE
T ss_pred eccCCCCCCCC-cceEecCCC----CCEEEEecCcccCCCCCCCceEEEEE
Confidence 33333333222 224554321 24899999999875522234444443
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0057 Score=69.91 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=81.4
Q ss_pred CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe--eeeecC-CCceeeeEEEEe--CCEEEEEeCCCCCCeeEEEEec
Q 045656 197 GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL--GIALDE-DWHLSFPYVFDY--HGQIYMMPESRAKGEVRLYRAV 271 (802)
Q Consensus 197 ~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~--gvvLde-~~HLSyP~VF~~--dG~iYMiPEss~sg~l~LYra~ 271 (802)
++++++||+.... ..-.+.+|.|.|.+.+|+.. .+||+. ..|+-.|.||.+ +|++||+=-....+.+.||+..
T Consensus 106 ~~~l~~~YTg~~~--~~q~q~lA~S~D~g~~~~k~~~nPVi~~~~~~fRDPkVfw~~~~g~w~Mv~g~~~~g~i~ly~S~ 183 (509)
T 3kf3_A 106 NQRIVAIYTNNIP--DNQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQWIMVVSKSQEYKIQIFGSA 183 (509)
T ss_dssp GGCEEEEEEEEET--TEEEEEEEEESSSSSSCEECTTCCSBCCSCSSCEEEEEEEETTTTEEEEEEEEGGGTEEEEEEES
T ss_pred CCceEEEECCCCC--CCeeEEEEEECCCCcceEEcCCCceEcCCCCcccCCeEEEECCCCEEEEEEEECCCCEEEEEECC
Confidence 3589999997432 34567788898878899875 467764 578999999965 4899999533345789999998
Q ss_pred cCCcCceeeeeccCC----CccCCEEEEE------CCEEEEEEeCC
Q 045656 272 NFPLEWKLEKIIMKK----PLVDPFMINH------DGQYWLFGSDH 307 (802)
Q Consensus 272 ~FP~~We~~~~Ll~~----~~vDatI~~~------dG~wwLF~S~~ 307 (802)
++ ..|+....+..+ ..+=|-+|+. +++|.|+.|..
T Consensus 184 DL-~~W~~~~~~~~~~~G~mwECPdlf~l~~~~~~~~k~vL~~s~~ 228 (509)
T 3kf3_A 184 NL-KNWVLNSNFSSGYYGNQYECPGLIEVPIENSDKSKWVMFLAIN 228 (509)
T ss_dssp SS-SSCEEEEEECCBCCCSCEEEEEEEEEEBTTSSCEEEEEEEEEC
T ss_pred CC-CCceEccccccCCccceeECCeEEEECccCCCCceEEEEEccC
Confidence 87 789988775432 3566778887 47999999864
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.058 Score=59.09 Aligned_cols=172 Identities=17% Similarity=0.271 Sum_probs=108.9
Q ss_pred eeeE-EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--Ccee-eeEEEEe--------CCEEEEE--
Q 045656 191 PFFY-LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--WHLS-FPYVFDY--------HGQIYMM-- 256 (802)
Q Consensus 191 PFll-~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--~HLS-yP~VF~~--------dG~iYMi-- 256 (802)
|=++ ..+|++.+++|.+.......+|.+.+|+|.|++|+....+.+.. +-+. -|.+++. +|.+.+.
T Consensus 31 p~~v~L~dG~LLa~~~~~~~~~~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~~P~l~~lP~~i~~~~~G~lL~~~~ 110 (367)
T 2ydt_A 31 ARPLELSDGTLLGTWENYSPEPPNVWFPIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLCSGS 110 (367)
T ss_dssp EEEEECTTSCEEEEEEECCCSSSCCCEEEEEESSTTSSCEEEEEECCCSSSSCEEEEEEEEECSSCBTTBCTTCEEEEEE
T ss_pred eeEEEcCCCCEEEEEEeccCCCCCeEEEEEEECCCCcCcCcCcccCCCCCCcccccCCeEEEccccccccCCCcEEEEEe
Confidence 4444 36889999999876543556889999999999999987655532 3444 5888765 5776665
Q ss_pred --eCCCCCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCCCCCCCCCCC-cEEEEEE
Q 045656 257 --PESRAKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDHSGFGTTQNG-QLEIWYS 323 (802)
Q Consensus 257 --PEss~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~-~L~i~~A 323 (802)
|+.....++.+|+.+|-=..|+....+.+. .+++|.++.++|+..+++++.. +....+ .+.+.+|
T Consensus 111 s~~~d~~~~~i~v~~S~D~G~TW~~~~~i~~g~~~~~~~g~~~v~eP~~~~~~G~l~v~~~d~~--~~~~~~q~l~~~~S 188 (367)
T 2ydt_A 111 SIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYKEKLILYYSDQR--DNATHSQKLVHQTT 188 (367)
T ss_dssp ECCTTCCCEEEEEEEESSSSSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTEEEEEEEECC--STTTCSSEEEEEEE
T ss_pred cccCCCCCCeEEEEEECCCCCCCcCCeecccCCCcccccCCCccccceEECCCCcEEEEECCCC--CCCCCCcEEEEEEC
Confidence 333346789999999988889876542221 2446656677999999998742 201223 3556677
Q ss_pred cCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE--CCeEEEEcccCC
Q 045656 324 SSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY--DGNLYRVGQDCA 368 (802)
Q Consensus 324 dSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~--dGkLyRp~QdC~ 368 (802)
++ --.|.+.. .+.... ....|+|=..++. ||++++..-.|.
T Consensus 189 ~D-G~TWs~~~--~~~~~~-~~~~rpg~p~v~~l~dG~l~~~y~~~~ 231 (367)
T 2ydt_A 189 TD-LKKWSKVV--DDTKYA-NYYARPGMPTVAKLPNNEYIYVYEYGG 231 (367)
T ss_dssp SS-SSSCCCCE--EEECCS-STTCEEEEEEEEECTTSCEEEEEEEET
T ss_pred CC-CCCCCCce--eccccC-CcCCCCCcceEEECCCCcEEEEEEecC
Confidence 76 24796422 111111 1235655322222 888888776664
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.023 Score=65.40 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=72.5
Q ss_pred eeeEE-ECCEEEEEEEeeeccCCCceEEEEEEeCCC----CCceEe--eeeecCC-------CceeeeE-EEEe-CCEEE
Q 045656 191 PFFYL-QGNDLYLFYETKNSITMQGDIGVAKSVDKG----ATWQQL--GIALDED-------WHLSFPY-VFDY-HGQIY 254 (802)
Q Consensus 191 PFll~-~~g~~ylF~E~~~~~~~~G~I~va~S~D~g----~tw~~~--gvvLde~-------~HLSyP~-VF~~-dG~iY 254 (802)
+-++. .+|+++|||+..+.. ....+++|.|.|.+ .+|+.. ++||..+ .|+=.|. |+.. +|++|
T Consensus 84 Gsav~~~dg~~~l~YTg~~~~-~~~~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~~~~~~~~~fRDP~vvw~~~~g~w~ 162 (541)
T 2ac1_A 84 GSATILPNGKPVILYTGIDPK-NQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWR 162 (541)
T ss_dssp EEEEECTTSCEEEEEEEECTT-SCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTTCCCTTSEECCCCCEECTTSCEE
T ss_pred ceEEEeeCCEEEEEEEEeCCC-CcEEEEEEEECCCCCCCceeEEecCCCcEEcCCCCCCCCCCceECCeEEeEeCCCeEE
Confidence 44444 489999999986543 35678889988753 789875 5777543 5788999 5775 89999
Q ss_pred EEeCC--CCCCeeEEEEeccCCcCceeeeeccC-----CCccCCEEEEEC
Q 045656 255 MMPES--RAKGEVRLYRAVNFPLEWKLEKIIMK-----KPLVDPFMINHD 297 (802)
Q Consensus 255 MiPEs--s~sg~l~LYra~~FP~~We~~~~Ll~-----~~~vDatI~~~d 297 (802)
|+=.+ ...|.+.||+..++ .+|+....++. ...+=|-+|+.+
T Consensus 163 m~~ga~~~~~G~i~ly~S~Dl-~~W~~~~~~~~~~~~~~mwECPdlf~l~ 211 (541)
T 2ac1_A 163 VIIGSKIHRRGLAITYTSKDF-LKWEKSPEPLHYDDGSGMWECPDFFPVT 211 (541)
T ss_dssp EEEEEEETTEEEEEEEEESSS-SSCEECSSCSEEEETSCCEEEEEEEEEE
T ss_pred EEEEEecCCceEEEEEECCCC-CCcEEcccccccCCCCCcccCCcEEEEC
Confidence 99432 34577999999887 78998643321 124445555553
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.027 Score=64.84 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=73.3
Q ss_pred eeeEE-ECCEEEEEEEeeeccCCCceEEEEEEeCCC----CCceEe--eeeecCC-----CceeeeEE-EE-eCCEEEEE
Q 045656 191 PFFYL-QGNDLYLFYETKNSITMQGDIGVAKSVDKG----ATWQQL--GIALDED-----WHLSFPYV-FD-YHGQIYMM 256 (802)
Q Consensus 191 PFll~-~~g~~ylF~E~~~~~~~~G~I~va~S~D~g----~tw~~~--gvvLde~-----~HLSyP~V-F~-~dG~iYMi 256 (802)
+-.+. .+|+++|||+..+.. ....+++|.|.|.+ .+|+.. ++||..+ .|+=.|.| +. .+|++||+
T Consensus 84 Gsav~~~dg~~~l~YTg~~~~-~~q~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~g~~~~~fRDP~vvw~~~~g~w~mv 162 (543)
T 1st8_A 84 GSATILPGNIPAMLYTGSDSK-SRQVQDLAWPKNLSDPFLREWVKHPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIV 162 (543)
T ss_dssp EEEEEETTTEEEEEEEEECTT-SCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTCCTTSEECCCCCEECTTSCEEEE
T ss_pred ceEEEeeCCEEEEEEEEeCCC-CcEEEEEEEECCCCCCCcceeEEcCCCcEEeCCCCCCcCccCCCeEEEECCCCcEEEE
Confidence 44444 499999999987543 35678889988753 789885 5777543 57889994 66 58999999
Q ss_pred eCC--CCCCeeEEEEeccCCcCceeeeeccC-----CCccCCEEEEEC
Q 045656 257 PES--RAKGEVRLYRAVNFPLEWKLEKIIMK-----KPLVDPFMINHD 297 (802)
Q Consensus 257 PEs--s~sg~l~LYra~~FP~~We~~~~Ll~-----~~~vDatI~~~d 297 (802)
=.+ ...|.+.||+..++ ..|+....++. ...+=|-+|+.+
T Consensus 163 ~ga~~~~~G~i~ly~S~Dl-~~W~~~~~~~~~~~~~~mwECPdlf~l~ 209 (543)
T 1st8_A 163 VGGDRDNNGMAFLYQSTDF-VNWKRYDQPLSSADATGTWECPDFYPVP 209 (543)
T ss_dssp EEEEETTEEEEEEEEESSS-SSCEECSSCSEEETTCCCCEEEEEEEEE
T ss_pred EEEecCCceEEEEEECCCC-CCcEECccccccCCCCCceeCCcEEEEC
Confidence 432 34578999999887 78998643321 134556666664
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.7 Score=50.23 Aligned_cols=221 Identities=17% Similarity=0.200 Sum_probs=118.9
Q ss_pred eCeeeEE--------ECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC--------CceeeeEEEEeCCE
Q 045656 189 ADPFFYL--------QGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------WHLSFPYVFDYHGQ 252 (802)
Q Consensus 189 ADPFll~--------~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------~HLSyP~VF~~dG~ 252 (802)
.+|++++ .+|++.+...........+.|.+..|+|+|.+|+....+-+.. .-++-|++...+|+
T Consensus 81 ~~P~l~~lp~~v~~~~~G~ll~~~~~~~~d~~~~~~~v~~S~D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP~~~~~~G~ 160 (355)
T 3a72_A 81 YQPFLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGK 160 (355)
T ss_dssp EEEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEESSTTSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTE
T ss_pred cCCcEEecCcccccCCCCcEEEEEeeecCCCCCceEEEEEECCCCccCccCccccccCccccccCCCccccceEEccCCe
Confidence 3677764 2677766655543222367899999999999999987644321 12677888888999
Q ss_pred EEEEeCCC-----CCCeeEEEEeccCCcCceeeeecc-CCCcc----CCEEEEE-CCEEEEEEeCCCCCC-CCCCCcEEE
Q 045656 253 IYMMPESR-----AKGEVRLYRAVNFPLEWKLEKIIM-KKPLV----DPFMINH-DGQYWLFGSDHSGFG-TTQNGQLEI 320 (802)
Q Consensus 253 iYMiPEss-----~sg~l~LYra~~FP~~We~~~~Ll-~~~~v----DatI~~~-dG~wwLF~S~~~~~g-~~~n~~L~i 320 (802)
++++-... ....+.+-...| =..|.....+. ..... =+++++. ||++.|-|....... ......+.+
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~l~y~~~~~~~~~~~~~~~~~ 239 (355)
T 3a72_A 161 LICYYSDQRDNATYGQTMVHQVTND-LKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYY 239 (355)
T ss_dssp EEEEEEECCCTTTCSCEEEEEEESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEEBCTTSSSCBCBEEE
T ss_pred EEEEECCCCCCCCCCcEEEEEECCC-CCCCCCCeeccccCccCCCCCceEEEECCCCCEEEEEEECCCcccCCCceeEEE
Confidence 98884221 122333445556 46796544322 11111 1355555 899998886521100 011235777
Q ss_pred EEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEE-E------CCeEEEEcccCCCCCCceEEEEEeccCCccceEEecc
Q 045656 321 WYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFV-Y------DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELEG 393 (802)
Q Consensus 321 ~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~-~------dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~~ 393 (802)
.+|++. ..|.+....++...+. ..+.|.+++ + +|+|+.-..+ +..|. --++....+.++...
T Consensus 240 ~iS~DG-~tw~~~~~~~~~~~~~---~~~~g~p~v~~~~~gg~~g~ll~s~~~-----~~~v~--~s~~~g~~~W~~~~~ 308 (355)
T 3a72_A 240 RLSSDP-ENIASAPGQRLVVSSG---TQPTSSPYAVWTPYGGENGTIIVSSGT-----QGTLF--INKALGEGEWTEIPC 308 (355)
T ss_dssp EEESST-TCCTTSCCEECCBTTC---CCCBSSCEEEEESTTSTTCEEEEECSS-----CSSEE--EESSTTCSCBEEECC
T ss_pred EECCCc-ccccCcCCcceecCCC---cccCCCCeEEECcCCCCCCeEEEEcCC-----CcEEE--EECCCCCCCCeECCC
Confidence 778762 4687654444444321 124555533 2 5677777643 23333 333333233444431
Q ss_pred ccCCCCCCccccccccC-CCCC-eEEEEeCcccC
Q 045656 394 RNAWNGARYHHLDAQQL-SSGE-WIAVMDGDRAL 425 (802)
Q Consensus 394 ~~~w~~~~~Hhld~~~l-~~g~-~i~vvDG~r~~ 425 (802)
..+. .+-- .++.+ .++. +++++-|-..+
T Consensus 309 -~~~~--~Ys~-~l~~~~~~~~~~~~~~~~~~~~ 338 (355)
T 3a72_A 309 -PEEH--GYTR-ALRVLSEDGGRYLVVNSAGVLL 338 (355)
T ss_dssp -SSCC--CTTC-EEEECSHHHHCEEEEEECCCTT
T ss_pred -CCCC--CCCh-hheeeccCCceEEEEecccccC
Confidence 1111 1111 13334 2344 78888888777
|
| >2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=66.41 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=56.0
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeeccC----------------------------------------CCceEEEEEEeCC
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNSIT----------------------------------------MQGDIGVAKSVDK 224 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~~~----------------------------------------~~G~I~va~S~D~ 224 (802)
.-|-||++++.+ |++||.+|+..... .+|.|++++|.|.
T Consensus 278 ~~FRDP~Vf~d~dG~~YMVfgA~t~~~~~~G~~~ly~w~~yg~~~~f~~~~~~~v~~~~~~~~~a~~~~G~IgL~~s~dl 357 (571)
T 2yfr_A 278 IAMRDAHVIDDDNGNRYLVFEASTGTENYQGDDQIYQWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGIIKLNDD 357 (571)
T ss_dssp CCCEEEEEEECTTCCEEEEEEEEBCTTSCCSGGGGGBGGGTCSCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEEEECSC
T ss_pred ccCcCCeEEEeCCCCEEEEEEeccCCCCcccchhhccccccccccccchhhhccccccccccccchhccceEEEEEcCCC
Confidence 457999999885 99999999875431 3699999999763
Q ss_pred ---CCCceEeeeeecCC---CceeeeEEEEeCCEEEEE
Q 045656 225 ---GATWQQLGIALDED---WHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 225 ---g~tw~~~gvvLde~---~HLSyP~VF~~dG~iYMi 256 (802)
...|+..++++... ..+=-|.+|+.+|++||+
T Consensus 358 ~~n~~~We~~~pL~~~~~v~dm~EcP~lf~~dG~yyL~ 395 (571)
T 2yfr_A 358 VKNPSVAKVYSPLISAPMVSDEIERPDVVKLGNKYYLF 395 (571)
T ss_dssp TTSCCEEEECCCSEECTTTBSCCEEEEEEEETTEEEEE
T ss_pred cCCcccceeccccccCCCcCceeecCcEEEECCEEEEE
Confidence 35799888765442 345669999999999999
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.023 Score=66.63 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCEEEEEEEeeec---------cCCCceEEEEEEeCCCCCceEe--eeeecC-C-----CceeeeEEEE-----------
Q 045656 197 GNDLYLFYETKNS---------ITMQGDIGVAKSVDKGATWQQL--GIALDE-D-----WHLSFPYVFD----------- 248 (802)
Q Consensus 197 ~g~~ylF~E~~~~---------~~~~G~I~va~S~D~g~tw~~~--gvvLde-~-----~HLSyP~VF~----------- 248 (802)
+|++++||+.... ..+.-...+|.|.|.|.+|+.. .+||.. | .|+=.|+||+
T Consensus 109 ~g~~~~~YTg~~~~~~~~~~~~~~~~q~Q~lA~S~D~g~~w~K~~~nPVi~~~p~g~~~~~fRDPkV~~~~~~d~~~~~~ 188 (634)
T 3lig_A 109 NNTPTLLYTSVSFLPIHWSIPYTRGSETQSLAVARDGGRRFDKLDQGPVIADHPFAVDVTAFRAPFVFRSARLDVLLSLD 188 (634)
T ss_dssp GGSCEEEEEEECSCCCCTTSCCCTTSEEEEEEEEEGGGTEEEECSSSCSBCSSSTTCCEEEEEEEEEECCHHHHHHHHSC
T ss_pred CCEEEEEEEecccccccccCcCCCCcEEEEEEEECCCCCEEEECCCCceEcCCCcccCCCccCCCeEccccCcccccccc
Confidence 6889999997532 1223467788898888999886 477764 2 3688899999
Q ss_pred -------------------eCCEEEEEeC---CCCCCeeEEEEe--cc---CCcCceeeeeccCC---------------
Q 045656 249 -------------------YHGQIYMMPE---SRAKGEVRLYRA--VN---FPLEWKLEKIIMKK--------------- 286 (802)
Q Consensus 249 -------------------~dG~iYMiPE---ss~sg~l~LYra--~~---FP~~We~~~~Ll~~--------------- 286 (802)
.+|++||+=- ....+++.||++ .+ + ..|+....|...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~ymvlg~~~~~~~g~v~lY~~~s~dd~~l-~~W~~~g~l~~~~~~~~~g~~~~~~~~ 267 (634)
T 3lig_A 189 EEVARNETAVQQAVDGWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEF-QYWEYLGEWWQEATNSSWGDEGTWAGR 267 (634)
T ss_dssp TTTTTSHHHHHHHHHTCCGGGCCCEEEEEEEETTTEEEEEEEEEGGGCTTCC-SCEEEEEEEEECCTTCCSSSSSCSSCC
T ss_pred ccccccccccccccccccCCCCeEEEEEEEecCCCCCEEEEEEeCCCCcccc-CCceEecccccccccccccccccccCc
Confidence 6799999932 234578999995 44 4 789988765421
Q ss_pred ---CccCCEEEEECC--------EEEEEEeC
Q 045656 287 ---PLVDPFMINHDG--------QYWLFGSD 306 (802)
Q Consensus 287 ---~~vDatI~~~dG--------~wwLF~S~ 306 (802)
..+=|-+|+.++ +|.|+.+.
T Consensus 268 ~G~~wECPdlf~l~~~g~~~~~~~~vl~~~~ 298 (634)
T 3lig_A 268 WGFNFETGNVLFLTEEGHDPQTGEVFVTLGT 298 (634)
T ss_dssp CCSEEEEEEEEEECSSSBCTTTSEEEEEEEE
T ss_pred eeeEEECCCEEEECCcccCCCCCcEEEEECC
Confidence 135566777754 57777765
|
| >1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... | Back alignment and structure |
|---|
Probab=94.53 E-value=0.64 Score=54.63 Aligned_cols=176 Identities=13% Similarity=0.146 Sum_probs=102.2
Q ss_pred EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCC
Q 045656 195 LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFP 274 (802)
Q Consensus 195 ~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP 274 (802)
.++|++.+=.+..+. .++..-.++-|+|+|.+|+..+.+ .+...+-|-|.|.||+++|+--+. .++..+|+..|.=
T Consensus 199 m~dGtLVfPv~~~~~-~g~~~s~iiySdD~G~TW~ls~~~--~~~gc~EpsVvEwdG~Lmm~~R~~-~g~R~Vy~S~D~G 274 (648)
T 1ms9_A 199 ASNGNLVYPVQVTNK-KKQVFSKIFYSEDEGKTWKFGKGR--SAFGCSEPVALEWEGKLIINTRVD-YRRRLVYESSDMG 274 (648)
T ss_dssp CTTSCEEEEEEEEET-TCCEEEEEEEESSTTSSCEECSCC--CCTTEEEEEEEEETTEEEEEEEET-TSCCCEEEESSTT
T ss_pred ecCCcEEEEEEEEcc-cccceeeEEEecCCCCCEEECCCC--CCCCccceEEEEECCEEEEEEEcc-CCcEEEEEecCCC
Confidence 456776433444332 222233345678889999976543 234578999999999998885443 2556789988877
Q ss_pred cCceeee-ec---------cCCCccCCEEEEE--CCEEEEEEeCCCCCCCC-CCCcEEEEEEcCCCCCCeeCCCCCeeeC
Q 045656 275 LEWKLEK-II---------MKKPLVDPFMINH--DGQYWLFGSDHSGFGTT-QNGQLEIWYSSSPFGPWKPHKKNPIYNG 341 (802)
Q Consensus 275 ~~We~~~-~L---------l~~~~vDatI~~~--dG~wwLF~S~~~~~g~~-~n~~L~i~~AdSplGPW~~hp~NPI~~~ 341 (802)
..|.... +| +..+.+.++++.. +|+-+|++|........ ....|++|.+|. +-|.+. .|+...
T Consensus 275 ~TWte~~~tlsrVW~n~~~~~~p~~~ss~itati~gr~vmL~t~P~~~~~~~~r~~L~LwvsDn--~~~~~v--gpvs~~ 350 (648)
T 1ms9_A 275 NTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDN--QRIYNV--GQVSIG 350 (648)
T ss_dssp SSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEEEECS--SCEEEE--EECSCT
T ss_pred ccccccccccccccccccccCCCCCCCceEEeccCCceEEEEeCcCCCCcccccceeEEEEcCC--CeEEec--Cccccc
Confidence 7786532 22 1123334444443 88888888753222211 135899999864 455543 354322
Q ss_pred CCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEecc
Q 045656 342 DKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 342 ~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
+. . -..-.+...||+|+.... +...-..+|.+.++++
T Consensus 351 ~~-~--~aYSsLl~~dg~L~lLYE-~~~~~~~~I~~~rLte 387 (648)
T 1ms9_A 351 DE-N--SAYSSVLYKDDKLYCLHE-INSNEVYSLVFARLVG 387 (648)
T ss_dssp TC-B--CCCEEEEEETTEEEEEEE-EEETTEEEEEEEECHH
T ss_pred cC-c--ccccceEeccceEEEEEE-ecCCCcceEEehhhhH
Confidence 11 1 122344456899986554 3322134788887753
|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.023 Score=63.65 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=75.1
Q ss_pred CceEEEEEecccChhhHHHHHHHhcC-CC-C-cceEEEEeCCCCCCCCC-CCCCCCcEEEEEcCCcC--ccccCccCCCC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSR-CS-S-VKEIVVVWNKGEPPKLS-DLDSAVPVRIRVEKQNS--LNNRFKLDPLI 627 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~-~p-~-v~kIvVVWn~~~pP~~~-~~~s~vPVrv~~~~~NS--LNNRF~P~~~I 627 (802)
...+|||-+|++....|.+.|+.+.+ .+ . ..|||||=+....+... .......|+++..++|. -..|-.=....
T Consensus 66 p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~~n~G~~~A~N~G~~~A 145 (501)
T 2ffu_A 66 PATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAA 145 (501)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECCCCcCHHHHHHHHHHhc
Confidence 36999999998433367777777643 32 2 24899997764433211 12223458888876653 12222223345
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
++|.|+.+|+|..++++.|+-..+.++++|+.+|+
T Consensus 146 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~ 180 (501)
T 2ffu_A 146 QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVS 180 (501)
T ss_dssp CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred CCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 78999999999999999999999999999998886
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.031 Score=55.71 Aligned_cols=111 Identities=8% Similarity=0.086 Sum_probs=74.9
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCCCCCcEEEEEcC--------CcC--cccc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLDSAVPVRIRVEK--------QNS--LNNR 620 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~s~vPVrv~~~~--------~NS--LNNR 620 (802)
+.||||-||+ +...|.+.|+.+.+-..- -||+||=++....... .+.....|+++..+ .|. -.+|
T Consensus 2 ~vSViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~ 80 (255)
T 1qg8_A 2 KVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred eEEEEEEcCC-CHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHH
Confidence 4799999998 567888888888653332 3777776543221111 12124568888776 442 1223
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccc
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPR 666 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R 666 (802)
=.-....++|-|+.+|||..+.++-|+...+..+++|+- +|+...+
T Consensus 81 N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 127 (255)
T 1qg8_A 81 NQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASK 127 (255)
T ss_dssp HHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceE
Confidence 233345689999999999999999999999999998764 5555443
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.1 Score=60.17 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=64.5
Q ss_pred EEECCEEEEEEEeeeccCCCceEEEEEEeCCC----CCceEe--eeeecCC-----CceeeeEE-E-EeCCEEEEEe--C
Q 045656 194 YLQGNDLYLFYETKNSITMQGDIGVAKSVDKG----ATWQQL--GIALDED-----WHLSFPYV-F-DYHGQIYMMP--E 258 (802)
Q Consensus 194 l~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g----~tw~~~--gvvLde~-----~HLSyP~V-F-~~dG~iYMiP--E 258 (802)
+..+|+++|||+.... .....+.+|.|.|.+ .+|+.. .+||..+ .|.=.|.| + +.+|++||+= .
T Consensus 98 v~~dg~~~l~YTg~~~-~~~q~q~lA~S~D~~d~~l~~w~K~~~nPVi~~p~g~~~~~fRDPkVvw~~~~g~w~MviGa~ 176 (546)
T 3ugf_A 98 CLPDGRIMMLYTGVTK-EMVEMLSLAYPADLSDPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIGAK 176 (546)
T ss_dssp ECTTSCEEEEEEEECT-TCCEEEEEEEESCTTCTTCCCEEECTTCCCBCCCTTSCTTSCCCBCCCEECSTTCEEEEEEEE
T ss_pred EeeCCeEEEEEEeccC-CCcEEEEEEEECCCCCCccceeEEcCCCceEeCCCCCCcceeeccceEeECCCCEEEEEEEEc
Confidence 3468999999998653 234567889888853 799875 4777643 58889995 5 3689999993 2
Q ss_pred CCCCCeeEEEEeccCCcCceeeeec
Q 045656 259 SRAKGEVRLYRAVNFPLEWKLEKII 283 (802)
Q Consensus 259 ss~sg~l~LYra~~FP~~We~~~~L 283 (802)
....|.+.||+..++ .+|+....+
T Consensus 177 ~~~~G~vllY~S~DL-~~W~~~~~~ 200 (546)
T 3ugf_A 177 YNTTGIAMVYETKDF-KSFKLLEEL 200 (546)
T ss_dssp ETTEEEEEEEEESSS-SSCEECSSC
T ss_pred cCCcceEEEEECCCC-CCceEcccc
Confidence 245578899999887 789876543
|
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=94.17 E-value=2.4 Score=48.55 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=102.1
Q ss_pred EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEeccC
Q 045656 195 LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAVNF 273 (802)
Q Consensus 195 ~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~~F 273 (802)
..+|++.+=.+..+ ..++..-.++.|+|.|.+|+..+.+-. ..+-|.|.+. ||+++|.--+...+...+|+..+.
T Consensus 333 l~dGrLv~P~~~~~-~~g~~~s~i~~S~D~G~TW~~~~~~~~---~~~e~~vve~~dG~L~~~~R~~~~g~r~v~~S~D~ 408 (523)
T 4fj6_A 333 MQDGTLVFPIQFID-ATRVPNAGIMYSKDRGKTWHLHNLART---NTTEAQVAEVEPGVLMLNMRDNRGGSRAVATTKDL 408 (523)
T ss_dssp CTTSCEEEEEEEEC-TTSCEEEEEEEESSTTSSCEECCCSEE---TEEEEEEEEEETTEEEEEEEETTCSBCEEEEESST
T ss_pred EeCCeEEEEEEEEc-CCCCEEEEEEEECCCCCeEEECCCCCc---cccCCEEEEecCCEEEEEEEecCCCcEEEEEECCC
Confidence 45777754343322 223334556778999999998664322 2788999886 789999543333466789999998
Q ss_pred CcCceeeee---ccCCCccCCEEEEEC------C-EEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC
Q 045656 274 PLEWKLEKI---IMKKPLVDPFMINHD------G-QYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK 343 (802)
Q Consensus 274 P~~We~~~~---Ll~~~~vDatI~~~d------G-~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~ 343 (802)
-..|..... -+.++...++++.+. | .+.||+... . ......+.++.|.+---.|+... .|+.+.
T Consensus 409 G~TWt~~~~~~~~L~~P~c~~Sii~~~~~~~~~g~~~lL~snp~-~--~~~R~~l~v~~S~D~G~TW~~~~--~v~~~~- 482 (523)
T 4fj6_A 409 GKTWTEHPSSRSALQESVCMASLIKVNAKDNITGKDLLLFSNPN-T--TKGRNHITIKASLDGGLTWPTEH--QVLLDE- 482 (523)
T ss_dssp TSSCEECTTTTTSSBCSSCCCEEEEECGGGSTTCSCEEEEEEEC-C--SSSSCCEEEEEESSTTSCCCGGG--EEEEEC-
T ss_pred CCccCcCcCccccCCCCCcccEEEEEecccCCCCCcEEEEEccC-C--CCccccceEEEeCCCCCCCccCc--eEEEcC-
Confidence 888976431 233455667888764 3 455555432 1 11234688898875555798643 344332
Q ss_pred CCCcccCCcc--EE-ECCeEEEEcccCCCCCCceEEEEEec
Q 045656 344 SLGARNGGRP--FV-YDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 344 ~~~aR~GG~v--F~-~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
....|.. .. .||++...+-. . .+.|.+.+|+
T Consensus 483 ---~~~~~Ys~l~~~~dG~i~ilYE~-~---~~~I~f~~~~ 516 (523)
T 4fj6_A 483 ---AEGWGYSCLSMIDKETVGIFYES-S---VAHMTFQAVK 516 (523)
T ss_dssp ---SCCCCCEEEEECSSSEEEEEECC-S---SCSEEEEEEE
T ss_pred ---CCCcccceEEEcCCCEEEEEEEc-C---CCcEEEEEee
Confidence 1223333 22 37888766643 1 3577777774
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.034 Score=61.57 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=75.3
Q ss_pred CceEEEEEecccChhhHHHHHHHhcCCC--Cc-ceEEEEeCCCCCC-CCC---CCCCCC--cEEEEEcCCcC--ccccCc
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSRCS--SV-KEIVVVWNKGEPP-KLS---DLDSAV--PVRIRVEKQNS--LNNRFK 622 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~~p--~v-~kIvVVWn~~~pP-~~~---~~~s~v--PVrv~~~~~NS--LNNRF~ 622 (802)
...+|||-+|++....|.+.|+.+.+-. .+ .|||||=+....+ ... .+.... .|+++..++|. -..|=.
T Consensus 29 p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~ 108 (472)
T 1xhb_A 29 PTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLK 108 (472)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHH
Confidence 4699999999843277888888875532 22 5899997765433 111 111112 58998877653 112222
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
-....+.|.|+.+|+|..++++.|+...+..+++|+.+|+
T Consensus 109 g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~ 148 (472)
T 1xhb_A 109 GAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVC 148 (472)
T ss_dssp HHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred HHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEE
Confidence 2234578999999999999999999999999999987765
|
| >3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=1.4 Score=48.36 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=103.8
Q ss_pred eeeCe--eeEEECCEEEEEEEeeecc--CCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCC
Q 045656 187 FVADP--FFYLQGNDLYLFYETKNSI--TMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAK 262 (802)
Q Consensus 187 F~ADP--Fll~~~g~~ylF~E~~~~~--~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~s 262 (802)
|++=| =+..++|++.+=.+..... ..+..-.++-|+| |.+|+..+.+- +...+-|.|.+.||+++|+--+ .
T Consensus 171 ~~~g~G~GI~l~~G~Lv~P~~~~~~~~~~~~~~s~~iyS~D-G~tW~~~~~~~--~~~~~ep~vvE~dG~L~m~~R~--~ 245 (379)
T 3sil_A 171 MLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTD-GITWSLPSGYC--EGFGSENNIIEFNASLVNNIRN--S 245 (379)
T ss_dssp EEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESS-SSSEECCSCCE--ECTTCCEEEEEETTEEEEEECC--S
T ss_pred ecCCCCceEEEcCCcEEEEEEEeeccCCCCCEEEEEEEcCC-CCCeEECCCCC--CccCCCCEEEEECCEEEEEEEe--C
Confidence 45545 2334577764433332221 1222334455777 99998754321 2346889999999999999877 6
Q ss_pred CeeEEEEeccCCcCceeeeecc-----CCCccCCEEEEE--CCEEEEEEeCCCCCC-CCCCCcEEEEEEcCCCCC--Cee
Q 045656 263 GEVRLYRAVNFPLEWKLEKIIM-----KKPLVDPFMINH--DGQYWLFGSDHSGFG-TTQNGQLEIWYSSSPFGP--WKP 332 (802)
Q Consensus 263 g~l~LYra~~FP~~We~~~~Ll-----~~~~vDatI~~~--dG~wwLF~S~~~~~g-~~~n~~L~i~~AdSplGP--W~~ 332 (802)
+....|+..+.=..|.....+. ..+.+-++++.. +++-+|++|...... ......|++|.+|..-++ |.-
T Consensus 246 g~r~v~~S~D~G~tWt~~~~~~~~~~~~~~~~~~s~i~~~~~~~~vmL~t~P~~~~~~~~R~~L~l~~sd~~~~~~~~~~ 325 (379)
T 3sil_A 246 GLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGEVKLID 325 (379)
T ss_dssp SBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEcCCCccCCCCcccccccccCCCCcccceEeeccCCCEEEEEECCCCccccccccceEEEEecCCCCCceEEe
Confidence 6778899988878898543221 234555666665 888777776532221 113458999999873333 332
Q ss_pred CCCCCeeeCCCCCCcccCCccEEE----CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 333 HKKNPIYNGDKSLGARNGGRPFVY----DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 333 hp~NPI~~~~~~~~aR~GG~vF~~----dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
..-|+..+.. .-..-.+-.. +++|+..... +..|.+.++++
T Consensus 326 -~~gp~~~~~~---~~aySsL~~~~~~~~~~l~~LyE~-----~~~i~f~~lte 370 (379)
T 3sil_A 326 -DFYPKVGNAS---GAGYSCLSYRKNVDKETLYVVYEA-----NGSIEFQDLSR 370 (379)
T ss_dssp -EEECSCCCTT---SCCCEEEEEEEETTEEEEEEEEEE-----TTEEEEEECGG
T ss_pred -eccccccCCC---ceecCeeEecCCCCCCEEEEEEEC-----CCcEEEEecHH
Confidence 2234322110 0111222221 3477776544 23788887764
|
| >3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.087 Score=60.08 Aligned_cols=73 Identities=21% Similarity=0.425 Sum_probs=54.6
Q ss_pred eeeCeeeEE---ECCEEEEEEEeeecc---------------------------------CCCceEEEEEEeC-CCCCce
Q 045656 187 FVADPFFYL---QGNDLYLFYETKNSI---------------------------------TMQGDIGVAKSVD-KGATWQ 229 (802)
Q Consensus 187 F~ADPFll~---~~g~~ylF~E~~~~~---------------------------------~~~G~I~va~S~D-~g~tw~ 229 (802)
-+-||++++ ++|++||.||.--.. ...|.|++++..+ +...|+
T Consensus 243 ~fRDP~vf~DP~~dG~~YLVFEgnT~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~anG~IGLa~~~s~D~~~We 322 (496)
T 3vss_A 243 NFRDPFTFEDPAHPGETFMVFEGNSAMQRETATCNEADLGYRQGDPYAETVDDVNASGATYQIGNVGLAKAKNKQLTEWE 322 (496)
T ss_dssp CCEEEEEECCTTSTTCCEEEEEEEBSSCGGGCCCCHHHHCCCTTCTTCCCHHHHHHHTGGGCEEEEEEEEESSTTSCCEE
T ss_pred ccCCCeeEecCCCCCcEEEEEecccCCcCccccccccccccccccccccccccccccccccccceEEEEEccCCCCCccE
Confidence 367999996 578999999974321 1258899887643 578899
Q ss_pred EeeeeecC---CCceeeeEEEEeCCEEEEEeCC
Q 045656 230 QLGIALDE---DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 230 ~~gvvLde---~~HLSyP~VF~~dG~iYMiPEs 259 (802)
...+++.. ...+==|.||+.+|++||+--+
T Consensus 323 ~~~PL~~a~~v~deiErP~vf~~dGKyYLFt~s 355 (496)
T 3vss_A 323 FLPPILSANCVTDQTERPQIYFKDGKSYLFTIS 355 (496)
T ss_dssp EEEEEEEEETTBSCCEEEEEEEETTEEEEEEEE
T ss_pred EeCccccCCCCCCceeCCcEEEECCEEEEEEec
Confidence 99886643 3456779999999999999543
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=1.1 Score=52.87 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=94.0
Q ss_pred CCCCccCccc--cccccCCCCCCCCCCCCe-eccccccCCCCCCceeeCee--eEEEC----CEEEEEEEeeeccCCCce
Q 045656 145 NSPFSLKPIE--TANVWRDDSAAWPVANPI-MTCASVSSAGFPSNFVADPF--FYLQG----NDLYLFYETKNSITMQGD 215 (802)
Q Consensus 145 ~~p~~l~p~~--~~~~~~~~~~~w~~~NPV-lt~~~v~d~~~~~~F~ADPF--ll~~~----g~~ylF~E~~~~~~~~G~ 215 (802)
.+||...|-. ..-.|.|.+.-|- .|. ++. +... ....+++.|= +...+ |++++=..... ...
T Consensus 417 ~s~~~~~~t~~i~v~~S~DgG~TWs--~p~~l~~--~~~~-~~~~~~~gpG~gI~l~d~~~~GrLv~p~~~~~----~~~ 487 (679)
T 2sli_A 417 NSVFKAFPTNYLAMRYSDDEGASWS--DLDIVSS--FKPE-VSKFLVVGPGIGKQISTGENAGRLLVPLYSKS----SAE 487 (679)
T ss_dssp TCSEEECSSCEEEEEEESSTTSSCC--CCEECGG--GCCT-TCSEEEECSEECEECCSSTTTTCEEEEEEEES----SCS
T ss_pred ccccccCCceEEEEEEeCCCCccCC--CCcccCc--ccCc-cccceecCCCceEEecCCCCCCEEEEEEEecC----CCE
Confidence 4566555422 2235667777775 333 221 2111 1123555562 12233 77765333321 245
Q ss_pred EEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEeccCCcCceeeee--ccCCC--ccC
Q 045656 216 IGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI--IMKKP--LVD 290 (802)
Q Consensus 216 I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~--Ll~~~--~vD 290 (802)
..++.|+|.|.+|+....++....+..-|.|.+. +|++||+-++. .+++.+|+..+-=..|+.... .+.++ ..+
T Consensus 488 s~i~~SdDgG~TW~~~~~~~p~~~~~~e~~vve~~dG~L~~~~R~~-~G~~~v~~S~DgG~TWt~~~~~~~L~~p~~g~~ 566 (679)
T 2sli_A 488 LGFMYSDDHGDNWTYVEADNLTGGATAEAQIVEMPDGSLKTYLRTG-SNCIAEVTSIDGGETWSDRVPLQGISTTSYGTQ 566 (679)
T ss_dssp EEEEEESSTTSSCEEEECCCCCSCCCCCEEEEECTTSCEEEEECCS-SSSCEEEEESSTTSSCCCCEECTTCCCCSSCCC
T ss_pred EEEEEECCCCCceEeCccCCCCCCCccceEEEEeCCCEEEEEEEeC-CCCEEEEEEcCCCcCCCCCccccCCCCCCCcee
Confidence 6778899999999987765554567888999886 68999997765 467889999887778986542 23333 456
Q ss_pred CEEEE----ECCEEEEEEeC
Q 045656 291 PFMIN----HDGQYWLFGSD 306 (802)
Q Consensus 291 atI~~----~dG~wwLF~S~ 306 (802)
.+++. .+|+-+|+++.
T Consensus 567 ~s~i~~~~~~dGr~vll~~~ 586 (679)
T 2sli_A 567 LSVINYSQPIDGKPAIILSS 586 (679)
T ss_dssp CEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeeecCCCCEEEEEEc
Confidence 66765 38998877764
|
| >2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=1.8 Score=46.99 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=106.3
Q ss_pred eeeCeeeEEE-CCEEEEEEEeeecc-CCCc--eEEEEEEe---CCC---CCceEeeeeecC-CCceeeeEEEEe-CCEEE
Q 045656 187 FVADPFFYLQ-GNDLYLFYETKNSI-TMQG--DIGVAKSV---DKG---ATWQQLGIALDE-DWHLSFPYVFDY-HGQIY 254 (802)
Q Consensus 187 F~ADPFll~~-~g~~ylF~E~~~~~-~~~G--~I~va~S~---D~g---~tw~~~gvvLde-~~HLSyP~VF~~-dG~iY 254 (802)
.|.=|-++.. +|.+.+|+|.+... ...| .|.+..|. |.| .+|....++.+. ....+-|-++.. +|++|
T Consensus 37 s~r~PsLv~~~~G~l~A~~e~~~~~~~d~g~~~i~~~rS~~~~D~G~~~~tW~~~~~l~~~~~~~~~~Pt~v~~~~g~I~ 116 (386)
T 2xzi_A 37 SFRIPAVVRTTTGRILAFAEGRRHTNQDFGDINLVYKRTKTTANNGASPSDWEPLREVVGSGAGTWGNPTPVVDDDNTIY 116 (386)
T ss_dssp EEEEEEEEECTTSCEEEEEEEESSSSCSSSSEEEEEEEBSSSSSTTCSGGGBCCCEEEECCSSSEEEEEEEEECTTSCEE
T ss_pred EEEeeEEEEeCCCcEEEEEEeeeCCCCCCCceeEEEEEeeeecCCCcCceeccCcEEEeeCCCCcccccEEEEeCCCCEE
Confidence 3444999976 78999999987642 1224 46677788 888 899987665554 345788998887 79999
Q ss_pred EEeC---C-----C------------------CCCeeEEEEeccCCcCceeeeeccC---C----C-ccC--CEEEEECC
Q 045656 255 MMPE---S-----R------------------AKGEVRLYRAVNFPLEWKLEKIIMK---K----P-LVD--PFMINHDG 298 (802)
Q Consensus 255 MiPE---s-----s------------------~sg~l~LYra~~FP~~We~~~~Ll~---~----~-~vD--atI~~~dG 298 (802)
|+-. . . ....+.+.+..+-=..|.....|.. . . +.+ ..|...+|
T Consensus 117 l~~~~~~g~y~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~~~g~gI~l~dG 196 (386)
T 2xzi_A 117 LFLSWNGATYSQNGKDVLPDGTVTKKIDSTWEGRRHLYLTESRDDGNTWSKPVDLTKELTPDGWAWDAVGPGNGIRLTTG 196 (386)
T ss_dssp EEEEEECTTEESSSCCBCTTSCBCEECCSSTTTSCEEEEEEESSTTSCCCCCEECHHHHSCTTCCSCCBCSSCCEECTTS
T ss_pred EEEEeccccccccCcceeccCceecccccccccccEEEEEEECCCCccCCCcccCccccccccceeeccCCccEEEecCC
Confidence 9951 1 1 1235667777665567975433221 1 0 112 23555588
Q ss_pred EEEEEEeCCCCCCCCCCCcEEEEEEcCC-CC-CCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceE
Q 045656 299 QYWLFGSDHSGFGTTQNGQLEIWYSSSP-FG-PWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRV 375 (802)
Q Consensus 299 ~wwLF~S~~~~~g~~~n~~L~i~~AdSp-lG-PW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L 375 (802)
++++-.. ..+++|+++ -| .|+....-+ . . ....++.. +|+|++.++.-. |...
T Consensus 197 rLv~p~~------------~~~~~S~D~~~G~tW~~~~~~~---~-----~-~e~~vve~~dG~L~~~~r~~~---g~~r 252 (386)
T 2xzi_A 197 ELVIPAM------------GRNIIGRGAPGNRTWSVQRLSG---A-----G-AEGTIVQTPDGKLYRNDRPSQ---KGYR 252 (386)
T ss_dssp CEEEEET------------TEEEEEESSTTSCEEEEEECTT---C-----C-SSEEEEECTTSCEEEEECCSS---SEEE
T ss_pred EEEEEeE------------EEEEEccCCCCCCcccccCcCC---C-----C-CcCEEEEeCCCcEEEEEeCCC---CccE
Confidence 8765441 235567663 33 598543211 1 0 12245655 799999887532 3346
Q ss_pred EEEEeccCCcc
Q 045656 376 RTFKVEILTKN 386 (802)
Q Consensus 376 ~l~~It~Lt~~ 386 (802)
.+++.++ ..|
T Consensus 253 ~v~~S~D-~tW 262 (386)
T 2xzi_A 253 MVARGTL-EGF 262 (386)
T ss_dssp EEEEEET-TEE
T ss_pred EEEEEeC-Ccc
Confidence 7888877 444
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.073 Score=61.04 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=75.9
Q ss_pred CceEEEEEecccChhhHHHHHHHhcC-CC-Cc-ceEEEEeCCCCCCC-CC---CC-CCCCcEEEEEcCCcC--ccccCcc
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSR-CS-SV-KEIVVVWNKGEPPK-LS---DL-DSAVPVRIRVEKQNS--LNNRFKL 623 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~-~p-~v-~kIvVVWn~~~pP~-~~---~~-~s~vPVrv~~~~~NS--LNNRF~P 623 (802)
...+|||-+|++....|.+.|+.+.+ .+ .+ .|||||=++...+. .. .+ .....|+|++.++|. -..|=.=
T Consensus 112 P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~G 191 (570)
T 2d7i_A 112 PNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLG 191 (570)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHHH
Confidence 47999999998444677777877654 22 22 48999977654443 21 11 122358888876652 1222222
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
....++|-|+.+|+|+.+.++-|+-..+..+++|+.+|+
T Consensus 192 ~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~ 230 (570)
T 2d7i_A 192 ASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVC 230 (570)
T ss_dssp HHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEE
T ss_pred HHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEe
Confidence 234578999999999999999999999999999988776
|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=6.4 Score=44.68 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=113.3
Q ss_pred CeeccccccCCC-CCCceeeCeeeEEE-CCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecC----CC-c
Q 045656 171 PIMTCASVSSAG-FPSNFVADPFFYLQ-GNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDE----DW-H 240 (802)
Q Consensus 171 PVlt~~~v~d~~-~~~~F~ADPFll~~-~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde----~~-H 240 (802)
|+++..+|-+.+ .....+.=|-++.. +|.+++|+|...... ....|.+..|.|.|.+|+...++.+. +. .
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~P~L~~~~~G~lla~~~~~~~~~~~~~~~~i~~~rS~DgG~TW~~~~~l~~~~~~~~~~~ 82 (601)
T 1w8o_A 3 PLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKG 82 (601)
T ss_dssp CCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCBE
T ss_pred cceeeEeeeecCCCCcceEeEeeEEECCCCCEEEEEcccCCCCCCCCcceEEEEEeCCCCCCCCCCEEEecCccCCCCCc
Confidence 455544444443 22334556989866 789999999865431 12367889999999999988765542 22 2
Q ss_pred eeeeEEEEe--CCEEEEEeC--------CC---------CCCeeEEEEeccCCcCceeeeeccC---CC-----ccCC--
Q 045656 241 LSFPYVFDY--HGQIYMMPE--------SR---------AKGEVRLYRAVNFPLEWKLEKIIMK---KP-----LVDP-- 291 (802)
Q Consensus 241 LSyP~VF~~--dG~iYMiPE--------ss---------~sg~l~LYra~~FP~~We~~~~Ll~---~~-----~vDa-- 291 (802)
.+-|.++.+ +|++||+-- .+ ....+.+++..+-=..|.....+-+ .+ +.++
T Consensus 83 ~~~P~~~~d~~~g~i~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~ 162 (601)
T 1w8o_A 83 FSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGE 162 (601)
T ss_dssp EEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEE
T ss_pred cccceEEEECCCCeEEEEEEeecCCCccccccCCCccCCceEEEEEEEecCCCCCCCCcccccccccCCCeeEEEecCCe
Confidence 677987764 789998731 11 1135788888887677986553211 11 1111
Q ss_pred EEEEE----CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEccc
Q 045656 292 FMINH----DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQD 366 (802)
Q Consensus 292 tI~~~----dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~Qd 366 (802)
.|... +|++++-+.... +. ......+++|++---.|+... ++-.+ .....++.. ||+++....+
T Consensus 163 gi~~~~~~~~G~l~~~~~~~~--g~-~~~~~~~~~S~D~G~TW~~~~--~~~~~------~~~~~v~~~~dG~l~~~~r~ 231 (601)
T 1w8o_A 163 GIQLRYGPHAGRLIQQYTIIN--AA-GAFQAVSVYSDDHGRTWRAGE--AVGVG------MDENKTVELSDGRVLLNSRD 231 (601)
T ss_dssp CEECCSSTTTTCEEEEEEEEC--TT-SCEEEEEEEESSTTSSCEECC--CBCSS------CCSEEEEECTTSCEEEEECC
T ss_pred EEEccCCCcCceEEEEEEEcC--CC-CceeEEEEEECCCCcCccCCC--CCCCC------CCcCEEEEeCCCEEEEEEeC
Confidence 12222 377665443211 11 112456788876555798754 22111 112345554 7899886643
Q ss_pred CCCCCCceEEEEEeccC
Q 045656 367 CAESYGRRVRTFKVEIL 383 (802)
Q Consensus 367 C~~~YG~~L~l~~It~L 383 (802)
. ... ..+.+++.++-
T Consensus 232 ~-~~~-~~~~~~~S~Dg 246 (601)
T 1w8o_A 232 S-ARS-GYRKVAVSTDG 246 (601)
T ss_dssp T-TCC-SEEEEEEESST
T ss_pred C-CCC-CCEEEEEEcCC
Confidence 2 112 24566666543
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.1 Score=51.29 Aligned_cols=110 Identities=12% Similarity=-0.027 Sum_probs=69.0
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCC---CC-CCCCcEEEEEcCCcCc-cccCccCCCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLS---DL-DSAVPVRIRVEKQNSL-NNRFKLDPLIK 628 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~---~~-~s~vPVrv~~~~~NSL-NNRF~P~~~I~ 628 (802)
++||||-+|+ +...|++.|+.+.+-.. --||+||=++....... .+ .....|+++..+...+ .+|=.-....+
T Consensus 6 ~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~~a~N~g~~~a~ 84 (240)
T 3bcv_A 6 KVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLDVAT 84 (240)
T ss_dssp SEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHCC
T ss_pred cEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHHcC
Confidence 6899999998 56788888888754322 24788876654322111 11 1123477775432211 11222234567
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
+|-|+.+|||..+.++-|+...+..++....+|....
T Consensus 85 g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~ 121 (240)
T 3bcv_A 85 GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGL 121 (240)
T ss_dssp SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC--
T ss_pred CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEee
Confidence 8999999999999999999999998874444554333
|
| >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=4.8 Score=47.56 Aligned_cols=178 Identities=13% Similarity=0.070 Sum_probs=103.3
Q ss_pred eeeCe-eeE--EECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEE-eCCEEEEEeCCCCC
Q 045656 187 FVADP-FFY--LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFD-YHGQIYMMPESRAK 262 (802)
Q Consensus 187 F~ADP-Fll--~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~-~dG~iYMiPEss~s 262 (802)
++++| -.+ ..+|++++.+... +...++.|+|.|.+|+....+++......-|.|.+ .+|.+||.-.+..
T Consensus 477 ~~~~pg~GI~~~~~GrLv~p~~~~------~~s~v~~S~DgG~TW~~~~~~~p~~~~~~e~~ivel~dG~L~~~~R~~~- 549 (686)
T 2jkb_A 477 TYLCPGQGLALKSSNRLIFATYTS------GELTYLISDDSGQTWKKSSASIPFKNATAEAQMVELRDGVIRTFFRTTT- 549 (686)
T ss_dssp CEECSEECEECTTSSCEEEEEEET------TEEEEEEESSTTSSCEEEEEECSCSSCCCCEEEEEEETTEEEEEECCSS-
T ss_pred eeeCCCcceEEccCCeEEEEEecC------CcEEEEEECCCCCeeEeCcccCCCCCCceeeEEEEecCCEEEEEEEcCC-
Confidence 45556 222 3478887755431 35567899999999998876655444566787776 4899999865543
Q ss_pred CeeEEEEeccCCcCceeeee---ccCC-CccCCEEEE----ECCEEEEEEeCCCCCCCCCCCcEEEE--EEcCCC-C-CC
Q 045656 263 GEVRLYRAVNFPLEWKLEKI---IMKK-PLVDPFMIN----HDGQYWLFGSDHSGFGTTQNGQLEIW--YSSSPF-G-PW 330 (802)
Q Consensus 263 g~l~LYra~~FP~~We~~~~---Ll~~-~~vDatI~~----~dG~wwLF~S~~~~~g~~~n~~L~i~--~AdSpl-G-PW 330 (802)
+.+.+|+..+-=..|..... |.+. ..+.++++. .+|+.+|++++......+. .+.++ ++.|.. | .|
T Consensus 550 G~~~v~~S~DgG~TWs~~~~~~~L~~p~~g~~~sii~~~~l~dG~~~ll~s~p~~~~~R~--~~~l~~S~~~S~D~G~TW 627 (686)
T 2jkb_A 550 GKIAYMTSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSGRK--GGQLVVGLVNKEDDSIDW 627 (686)
T ss_dssp SSCEEEEESSTTSSCCCCEECSSCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCSSSSB--CEEEEEEEECTTTCCEEE
T ss_pred CcEeEEEeCCCCCCCccccccccCcCCCCceeEEEEEeeecCCCCEEEEEECCCCCCcce--eeEEEEEEEeccCCCCcc
Confidence 45678999887778986543 2222 145666554 3899888886532111112 34555 445553 4 58
Q ss_pred eeCCCCCeeeCCCCCCcccCC--ccEEE-CCeEEEEcccCCC-------CCCceEEEEEec
Q 045656 331 KPHKKNPIYNGDKSLGARNGG--RPFVY-DGNLYRVGQDCAE-------SYGRRVRTFKVE 381 (802)
Q Consensus 331 ~~hp~NPI~~~~~~~~aR~GG--~vF~~-dGkLyRp~QdC~~-------~YG~~L~l~~It 381 (802)
++.. . .+.+ .++.+ .+... ||+++...- +.. .|...|...+++
T Consensus 628 ~~~~--~--i~~~---~~~~~Ys~l~~~~DG~i~ilye-~g~tW~~~~~~~~~~I~~~rf~ 680 (686)
T 2jkb_A 628 KYHY--D--IDLP---SYGYAYSAITELPNHHIGVLFE-KYDSWSRNELHLSNVVQYIDLE 680 (686)
T ss_dssp EEEE--E--SSCT---TSBCCSEEEEECTTSCEEEEEE-CSCSSCTTSCSCSSCEEEEEEC
T ss_pred cCCe--e--ecCC---CCCccccEEEEeCcCEEEEEEe-CCCcccccccccCCceEEEEEC
Confidence 7532 1 1110 12222 23333 788877663 211 234467777764
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=4 Score=45.17 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=53.9
Q ss_pred ceeeCeeeEE-ECCEEEEEEEeeeccC---CCc--eEEEEEEeCCCCCceEeeeeecCC--CceeeeEEEEe--CCEEEE
Q 045656 186 NFVADPFFYL-QGNDLYLFYETKNSIT---MQG--DIGVAKSVDKGATWQQLGIALDED--WHLSFPYVFDY--HGQIYM 255 (802)
Q Consensus 186 ~F~ADPFll~-~~g~~ylF~E~~~~~~---~~G--~I~va~S~D~g~tw~~~gvvLde~--~HLSyP~VF~~--dG~iYM 255 (802)
..+.=|-++. .+|++.+|+|.+.... ..+ .|.+.+|.|.|.+|+...++.+.+ .+...|-++.+ +|++||
T Consensus 21 ~~~riP~l~~~~~G~lla~~~~r~~~~~d~~~~~~~i~~~rS~DgG~TWs~~~~v~~~~~~~~~~dp~l~~d~~~G~i~l 100 (449)
T 2bf6_A 21 SNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDYPDKSSVIDTTLIQDDETGRIFL 100 (449)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEETTSSCCTTSSCEEEEEEEESSTTSSCCCCEEEECCSTTCEEEEEEEEECTTTCCEEE
T ss_pred ceEEcceEEECCCCCEEEEEeCccCccccCCCCcceEEEEEcCCCCCCCCCCEEeecCCCccccccceeEEECCCCeEEE
Confidence 3455588885 6899999999875421 113 688899999999999988888775 35777888865 588888
Q ss_pred E
Q 045656 256 M 256 (802)
Q Consensus 256 i 256 (802)
+
T Consensus 101 ~ 101 (449)
T 2bf6_A 101 L 101 (449)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.57 E-value=11 Score=38.20 Aligned_cols=167 Identities=9% Similarity=0.071 Sum_probs=98.3
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe---CCCC----CCee
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP---ESRA----KGEV 265 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP---Ess~----sg~l 265 (802)
....++++|||--.-........+.++. -...+|+.... + +......-....++++|++= .... ...+
T Consensus 97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d--~~~~~W~~~~~-~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 97 ACAAEGKIYTSGGSEVGNSALYLFECYD--TRTESWHTKPS-M--LTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp EEEETTEEEEECCBBTTBSCCCCEEEEE--TTTTEEEEECC-C--SSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE
T ss_pred EEEECCEEEEECCCCCCCcEeeeEEEEe--CCCCceEeCCC-C--cCCcceeEEEEECCEEEEECCCCCCCCcccccceE
Confidence 4456899999865321222233454443 33567987654 2 22234445556799999992 2222 4556
Q ss_pred EEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCC
Q 045656 266 RLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSL 345 (802)
Q Consensus 266 ~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~ 345 (802)
..|-... .+|+..+. +..+....+++..+++.|+|.-.. +......+.+| |-....|++.+.-|
T Consensus 172 ~~yd~~~--~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~---~~~~~~~~~~y--d~~~~~W~~~~~~p-------- 235 (306)
T 3ii7_A 172 EVYDPAT--ETWTELCP-MIEARKNHGLVFVKDKIFAVGGQN---GLGGLDNVEYY--DIKLNEWKMVSPMP-------- 235 (306)
T ss_dssp EEEETTT--TEEEEECC-CSSCCBSCEEEEETTEEEEECCEE---TTEEBCCEEEE--ETTTTEEEECCCCS--------
T ss_pred EEeCCCC--CeEEECCC-ccchhhcceEEEECCEEEEEeCCC---CCCCCceEEEe--eCCCCcEEECCCCC--------
Confidence 6665433 57876554 334456778888899999997321 11112244444 43456799876433
Q ss_pred CcccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 346 GARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 346 ~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
..|.+...+..++++|.+.-.....+=..+..+.+
T Consensus 236 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 236 WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp CCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence 25777788888999999987554444445555554
|
| >2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=3.6 Score=44.62 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=93.7
Q ss_pred EECCEEEEEEEeeeccCCCceEEEEEEeC--CCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEec
Q 045656 195 LQGNDLYLFYETKNSITMQGDIGVAKSVD--KGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAV 271 (802)
Q Consensus 195 ~~~g~~ylF~E~~~~~~~~G~I~va~S~D--~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~ 271 (802)
..+|++++-++ ..++.|+| .|.+|+.... +. +-+-|.|.+. +|+++|+-.+...+...+|+..
T Consensus 193 l~dGrLv~p~~----------~~~~~S~D~~~G~tW~~~~~-~~---~~~e~~vve~~dG~L~~~~r~~~g~~r~v~~S~ 258 (386)
T 2xzi_A 193 LTTGELVIPAM----------GRNIIGRGAPGNRTWSVQRL-SG---AGAEGTIVQTPDGKLYRNDRPSQKGYRMVARGT 258 (386)
T ss_dssp CTTSCEEEEET----------TEEEEEESSTTSCEEEEEEC-TT---CCSSEEEEECTTSCEEEEECCSSSEEEEEEEEE
T ss_pred ecCCEEEEEeE----------EEEEEccCCCCCCcccccCc-CC---CCCcCEEEEeCCCcEEEEEeCCCCccEEEEEEe
Confidence 45777765443 23456788 8999997554 33 2377889887 6899999766554467899998
Q ss_pred cCCcCceeeee--ccCCCccCCEEEEE--CCEEEEEEeCCCCCCCCCCCcEEEEEEcCC-CCCCeeCCCCCeeeCCCCC-
Q 045656 272 NFPLEWKLEKI--IMKKPLVDPFMINH--DGQYWLFGSDHSGFGTTQNGQLEIWYSSSP-FGPWKPHKKNPIYNGDKSL- 345 (802)
Q Consensus 272 ~FP~~We~~~~--Ll~~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp-lGPW~~hp~NPI~~~~~~~- 345 (802)
+ ..|..... -+.++..-..++.. +|+-+|+++.... ......+.++.|.+- --.|+... ++...+..
T Consensus 259 D--~tWt~~~~~~~l~~~~~~~~~i~~~~~~~~~ll~~~p~~--~~~R~~l~l~~S~D~~G~tW~~~~---~~~~g~~~~ 331 (386)
T 2xzi_A 259 L--EGFGAFAPDAGLPDPACQGSVLRYNSDAPARTIFLNSAS--GTSRRAMRVRISYDADAKKFNYGR---KLEDAKVSG 331 (386)
T ss_dssp T--TEECCCEEEEEEEECSCCCEEEEEESSSSCEEEEEEECS--SSCSCCEEEEEECSTTCCCCCCCE---EGGGGCCSS
T ss_pred C--CccCcccccCCCCCCCCccEEEEecCCCCCEEEEECCCC--CCCCcceEEEEEcCCCCCccCCce---EEecCCccc
Confidence 8 88986441 12223344455554 4444445543111 112347888988654 33687421 11110000
Q ss_pred CcccCCcc--EEE-CCeEEEEcccC------CCCCCceEEEEEec
Q 045656 346 GARNGGRP--FVY-DGNLYRVGQDC------AESYGRRVRTFKVE 381 (802)
Q Consensus 346 ~aR~GG~v--F~~-dGkLyRp~QdC------~~~YG~~L~l~~It 381 (802)
.....+.. ... ||+|+...... .+.....|.+.+++
T Consensus 332 ~~~~~~ys~l~~~~dg~l~~lye~~~~~~~~~~~~~~~I~~~~~~ 376 (386)
T 2xzi_A 332 AGHEGGYSSMTKTGDYKIGALVESDFFNDGTGKNSYRAIIWRRFN 376 (386)
T ss_dssp SCEEEEEEEEEECTTSCEEEEEEEECCTTTTSTTCCEEEEEEEEC
T ss_pred cCCceEeceeEECCCCEEEEEEECCCccccccCCCcceEEEEEEe
Confidence 00112222 222 78888776543 23346788888885
|
| >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=3 Score=44.74 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=109.7
Q ss_pred CCeeccccccCCCCCCceeeCeeeE-E-ECCEEEEEEEeeecc-CCCce-EEEEEEeCCCC----CceEeeeeecC--C-
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFY-L-QGNDLYLFYETKNSI-TMQGD-IGVAKSVDKGA----TWQQLGIALDE--D- 238 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll-~-~~g~~ylF~E~~~~~-~~~G~-I~va~S~D~g~----tw~~~gvvLde--~- 238 (802)
-||+...++-+.+. ..+.=|-++ . .++.++.|+|..... ...+. |.+..|.|.|. +|+...++.+. +
T Consensus 6 ~~~f~~~~~~~~~~--~s~riP~Lv~~~~~G~l~a~~e~~~~~~~~~~~~i~~~rS~D~G~~~~~tW~~~~~~~~~~~~~ 83 (382)
T 1so7_A 6 LPVLQKESVFQSGA--HAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDG 83 (382)
T ss_dssp CCCSEEEEEEECTT--CCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTT
T ss_pred cceeecCcccCCCc--eEEEeCeEEEECCCCeEEEEEccCcCCCCCCCCEEEEEEeeeCCccccceeCCcEEeccCCCCC
Confidence 35666655533221 233448888 5 388999999986432 22355 78888999899 99987654443 1
Q ss_pred CceeeeEEEEe--CCEEEEEeC----C----------CCCCeeEEEEeccCCcCceeeeeccCC---C--------ccC-
Q 045656 239 WHLSFPYVFDY--HGQIYMMPE----S----------RAKGEVRLYRAVNFPLEWKLEKIIMKK---P--------LVD- 290 (802)
Q Consensus 239 ~HLSyP~VF~~--dG~iYMiPE----s----------s~sg~l~LYra~~FP~~We~~~~Ll~~---~--------~vD- 290 (802)
...+-|-++.+ +|++||+-. . .....+.+++.++-=..|+....|.+. + +.+
T Consensus 84 ~~~~~P~~v~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~DgG~TW~~~~~l~~~~~g~~~~~~~~~~~~p 163 (382)
T 1so7_A 84 HRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGP 163 (382)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECS
T ss_pred CccccceEEEECCCCcEEEEEEEecCCCccceeecCCCCccEEEEEEEcCCCCcCCCCccCChhhcCCCCCCceeeccCC
Confidence 23678987654 589998831 1 123467899988876789864432211 1 111
Q ss_pred -CEEEEEC--CEEEE-EEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEE----ECCeEE
Q 045656 291 -PFMINHD--GQYWL-FGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFV----YDGNLY 361 (802)
Q Consensus 291 -atI~~~d--G~wwL-F~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~----~dGkLy 361 (802)
..|...+ |++++ .+..... ..........+++|++---.|+....-| .+ .. .-.++. .+|+|+
T Consensus 164 g~gi~l~~~~G~lv~p~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~-----~~-~~~~~~~~~~~dg~l~ 235 (382)
T 1so7_A 164 GHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVA--QD-----TL-ECQVAEVETGEQRVVT 235 (382)
T ss_dssp SCCEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCS--BS-----EE-EEEEEEEEC--CEEEE
T ss_pred CcEeecccCCCcEEEEEEEecccccccCCCceeEEEEECCCCceeEcCcccC--CC-----CC-ccEEEEEEECCCCEEE
Confidence 2333445 88766 3322100 0000012456888887655798765322 11 01 112232 478998
Q ss_pred EEcccCCCCCCceEEEEEecc
Q 045656 362 RVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 362 Rp~QdC~~~YG~~L~l~~It~ 382 (802)
+...+-. | .+.+++.++
T Consensus 236 ~~~r~~~---g-~~~v~~S~D 252 (382)
T 1so7_A 236 LNARSHL---R-ARVQAQSTN 252 (382)
T ss_dssp EEEEESS---S-EEEEEEESS
T ss_pred EEEecCC---C-CEEEEEEcC
Confidence 8776421 2 466777765
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.29 Score=56.02 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=73.2
Q ss_pred CceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CCCCCCcEEEEEcCCcCc---cccCccCC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DLDSAVPVRIRVEKQNSL---NNRFKLDP 625 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~~s~vPVrv~~~~~NSL---NNRF~P~~ 625 (802)
...+|+|-||+ +...|.+.|+.+.+. +.--||+||=++....... .+....+|+++..+.+.. .+|=.-..
T Consensus 93 p~vsviIp~~n-~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~ 171 (625)
T 2z86_A 93 DGLSIVIPTYN-RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLR 171 (625)
T ss_dssp CCEEEEEEESS-CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHH
T ss_pred CcEEEEEecCC-cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHH
Confidence 46999999998 567888888888654 2356888887654332211 233345788777554331 12222233
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR 659 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR 659 (802)
..++|-|+.+|+|..++++.|+......+++|+-
T Consensus 172 ~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~ 205 (625)
T 2z86_A 172 AAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNV 205 (625)
T ss_dssp HCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTE
T ss_pred hCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCce
Confidence 4589999999999999999999999988888864
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.87 E-value=15 Score=37.02 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=97.0
Q ss_pred eeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CCCCCeeEEE
Q 045656 192 FFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SRAKGEVRLY 268 (802)
Q Consensus 192 Fll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss~sg~l~LY 268 (802)
-....++++|+|--.-. ......+.++. -...+|+.... + +......-....++++|++=- ......+..|
T Consensus 107 ~~~~~~~~lyv~GG~~~-~~~~~~~~~~d--~~~~~W~~~~~-~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 107 GATTLGDMIYVSGGFDG-SRRHTSMERYD--PNIDQWSMLGD-M--QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp EEEEETTEEEEECCBCS-SCBCCEEEEEE--TTTTEEEEEEE-C--SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred eEEEECCEEEEEcccCC-CcccceEEEEc--CCCCeEEECCC-C--CCCcccceEEEECCEEEEECCCCCCcccceEEEE
Confidence 34567899999864321 11123444433 34578988654 2 223344555666999999931 2234555565
Q ss_pred EeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 269 ra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
.... .+|+....+ ..+....++...+++.|+|.-.. +......+.+| |--...|+..+.-| .+|
T Consensus 181 d~~~--~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~---~~~~~~~v~~y--d~~~~~W~~~~~~p--------~~r 244 (301)
T 2vpj_A 181 DPHT--GHWTNVTPM-ATKRSGAGVALLNDHIYVVGGFD---GTAHLSSVEAY--NIRTDSWTTVTSMT--------TPR 244 (301)
T ss_dssp ETTT--TEEEEECCC-SSCCBSCEEEEETTEEEEECCBC---SSSBCCCEEEE--ETTTTEEEEECCCS--------SCC
T ss_pred eCCC--CcEEeCCCC-CcccccceEEEECCEEEEEeCCC---CCcccceEEEE--eCCCCcEEECCCCC--------Ccc
Confidence 5433 578765443 34456778888899999997431 11123355555 33456798765333 257
Q ss_pred cCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 349 ~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.+...+..+|++|.+.......+-..+..+.+
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred cceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 67777888999999986543332234444444
|
| >3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=3.1 Score=45.65 Aligned_cols=138 Identities=13% Similarity=0.158 Sum_probs=82.6
Q ss_pred ceeeCeeeEEECC----EEEEEEEeeeccC------------CCceEEEEEEeCCCCCceEeeeee----c--CCCceee
Q 045656 186 NFVADPFFYLQGN----DLYLFYETKNSIT------------MQGDIGVAKSVDKGATWQQLGIAL----D--EDWHLSF 243 (802)
Q Consensus 186 ~F~ADPFll~~~g----~~ylF~E~~~~~~------------~~G~I~va~S~D~g~tw~~~gvvL----d--e~~HLSy 243 (802)
.-+-||-.++.++ ++|||+..++... ....+-+.+|.|+|.+|....... . ..|.-.+
T Consensus 93 ~~v~~Pt~vv~~~tG~~~I~llvg~~~~~~~~~~~~~~~~~~~~~~l~lv~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3sil_A 93 SRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAML 172 (379)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHHHHHHHCSEEEEE
T ss_pred eeEecCceEEeCCCCCeeEEEEEEeecCCCcceeeccccCCCCceeEEEEEccCCCCcCCCCcccccccccccceeeeec
Confidence 3578999987654 9999987765432 234677889999999998753111 0 1111111
Q ss_pred --e--EEEEeCCEEEEEe-C-----CCC--CCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCC
Q 045656 244 --P--YVFDYHGQIYMMP-E-----SRA--KGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFG 311 (802)
Q Consensus 244 --P--~VF~~dG~iYMiP-E-----ss~--sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g 311 (802)
| -|--.+|.+ ++| + ... .....+| ..+ =..|++-+.+-.....+|+|++.||+.+|+.-.
T Consensus 173 ~g~G~GI~l~~G~L-v~P~~~~~~~~~~~~~~s~~iy-S~D-G~tW~~~~~~~~~~~~ep~vvE~dG~L~m~~R~----- 244 (379)
T 3sil_A 173 GGVGSGLQLNDGKL-VFPVQMVRTKNITTVLNTSFIY-STD-GITWSLPSGYCEGFGSENNIIEFNASLVNNIRN----- 244 (379)
T ss_dssp ECSEECEECTTSCE-EEEEEEEECTTSSCSEEEEEEE-ESS-SSSEECCSCCEECTTCCEEEEEETTEEEEEECC-----
T ss_pred CCCCceEEEcCCcE-EEEEEEeeccCCCCCEEEEEEE-cCC-CCCeEECCCCCCccCCCCEEEEECCEEEEEEEe-----
Confidence 2 122234543 333 1 111 1234555 455 668987655434568999999999998888732
Q ss_pred CCCCCcEEEEEEcCCCCCCeeCC
Q 045656 312 TTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 312 ~~~n~~L~i~~AdSplGPW~~hp 334 (802)
.+...+|.|.+-=..|+++.
T Consensus 245 ---~g~r~v~~S~D~G~tWt~~~ 264 (379)
T 3sil_A 245 ---SGLRRSFETKDFGKTWTEFP 264 (379)
T ss_dssp ---SSBCBCEEESSSSSCCEECT
T ss_pred ---CCCEEEEEEcCCCccCCCCc
Confidence 12234567765444799864
|
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.10 E-value=9.7 Score=43.51 Aligned_cols=140 Identities=15% Similarity=0.232 Sum_probs=83.4
Q ss_pred eeeCeeeEEE--CCEEEEEEEeeec---------------cCCCceEEEEEEeCCCCCceEeeeeec----CCCceeeeE
Q 045656 187 FVADPFFYLQ--GNDLYLFYETKNS---------------ITMQGDIGVAKSVDKGATWQQLGIALD----EDWHLSFPY 245 (802)
Q Consensus 187 F~ADPFll~~--~g~~ylF~E~~~~---------------~~~~G~I~va~S~D~g~tw~~~gvvLd----e~~HLSyP~ 245 (802)
-+-||-+++. +|++|||+..... ....+.+.+..|+|+|.+|.....+.+ ..|+.-++-
T Consensus 247 ~~~nP~lvvD~~tG~I~L~~~~~~g~~~~~~w~~~~~g~~~~~t~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~g 326 (523)
T 4fj6_A 247 GVGDPSILVDEKTNTIWVVAAWTHGMGNERAWWNSMPGMTPDETAQLMLVKSEDDGKTWSEPINITSQVKDPSWYFLLQG 326 (523)
T ss_dssp CEEEEEEEECTTTCCEEEEEEECCSCTTSCGGGTCCSSSSTTTSCEEEEEEESSTTSSCCCCEECHHHHCCTTCSEEEEC
T ss_pred cccCceEEEECCCCeEEEEEEecccccccccccccccCCCCCcceEEEEEEcCCCCccCCCCeeecccccCCcceEEecC
Confidence 3589999974 6999999764211 011247888999999999987654322 234322221
Q ss_pred ----EEEeCCEEEEEe-C--CC-CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCC
Q 045656 246 ----VFDYHGQIYMMP-E--SR-AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 246 ----VF~~dG~iYMiP-E--ss-~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~ 316 (802)
|.-.+|.+. +| + .. ......++...+.=..|+..+.+. ....++++++. ||+.+|+..... .+
T Consensus 327 ~G~GI~l~dGrLv-~P~~~~~~~g~~~s~i~~S~D~G~TW~~~~~~~-~~~~e~~vve~~dG~L~~~~R~~~------~g 398 (523)
T 4fj6_A 327 PGRGITMQDGTLV-FPIQFIDATRVPNAGIMYSKDRGKTWHLHNLAR-TNTTEAQVAEVEPGVLMLNMRDNR------GG 398 (523)
T ss_dssp SEECEECTTSCEE-EEEEEECTTSCEEEEEEEESSTTSSCEECCCSE-ETEEEEEEEEEETTEEEEEEEETT------CS
T ss_pred CCcceEEeCCeEE-EEEEEEcCCCCEEEEEEEECCCCCeEEECCCCC-ccccCCEEEEecCCEEEEEEEecC------CC
Confidence 333456543 33 1 11 111223444566666898755432 23788999997 899999765421 12
Q ss_pred cEEEEEEcCCCCCCeeCC
Q 045656 317 QLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp 334 (802)
...+++|.+--..|+++.
T Consensus 399 ~r~v~~S~D~G~TWt~~~ 416 (523)
T 4fj6_A 399 SRAVATTKDLGKTWTEHP 416 (523)
T ss_dssp BCEEEEESSTTSSCEECT
T ss_pred cEEEEEECCCCCccCcCc
Confidence 346777766545799865
|
| >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=2 Score=46.07 Aligned_cols=168 Identities=11% Similarity=0.066 Sum_probs=92.1
Q ss_pred CEEEEEEEeeecc----CCCceEEEEEEeCCCCCceEeeeeec-CCCceeeeEEEE-eCCEEEEEeCCCCCCeeEEEEec
Q 045656 198 NDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQLGIALD-EDWHLSFPYVFD-YHGQIYMMPESRAKGEVRLYRAV 271 (802)
Q Consensus 198 g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~~gvvLd-e~~HLSyP~VF~-~dG~iYMiPEss~sg~l~LYra~ 271 (802)
|++++-....+.. .......++.|+|.|.+|+.... +. .+...+.|.+-+ .+|++||+-.+. .+.+.+|+..
T Consensus 174 G~lv~p~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~-~~~~~~~~~~~~~~~~~dg~l~~~~r~~-~g~~~v~~S~ 251 (382)
T 1so7_A 174 RSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHF-VAQDTLECQVAEVETGEQRVVTLNARSH-LRARVQAQST 251 (382)
T ss_dssp CCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCC-CSBSEEEEEEEEEEC--CEEEEEEEEES-SSEEEEEEES
T ss_pred CcEEEEEEEecccccccCCCceeEEEEECCCCceeEcCcc-cCCCCCccEEEEEEECCCCEEEEEEecC-CCCEEEEEEc
Confidence 7776533332211 01235667889999999998654 22 111222333322 478999996654 3478899998
Q ss_pred cCCcCceeee---eccC-C-CccCCEEEEEC--------CEEEEEEeCCCCCCCCCCCcEEEEEEcCC-CC-CCeeCCCC
Q 045656 272 NFPLEWKLEK---IIMK-K-PLVDPFMINHD--------GQYWLFGSDHSGFGTTQNGQLEIWYSSSP-FG-PWKPHKKN 336 (802)
Q Consensus 272 ~FP~~We~~~---~Ll~-~-~~vDatI~~~d--------G~wwLF~S~~~~~g~~~n~~L~i~~AdSp-lG-PW~~hp~N 336 (802)
+-=..|.... .|.+ . +.+.++++... |+-+|+++...... ....+.+|.+-|. -| .|+..
T Consensus 252 D~G~tW~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ll~~~p~~~~--~r~~~~v~l~~S~D~G~tW~~~--- 326 (382)
T 1so7_A 252 NDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSW--QRADLGAYLNPRPPAPEAWSEP--- 326 (382)
T ss_dssp STTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSS--SSEEEEEEEESSTTCGGGCCCC---
T ss_pred CCCCCCCCCEEcccccCCCCCCcceEEEEeCCccccccCCccEEEEeCCCCCC--cccCCEEEEEeecCCCCcCCCC---
Confidence 8777897643 2444 2 45667777653 55566666422111 2235777665444 33 58743
Q ss_pred CeeeCCCCCCcccCC--ccE-EECC-----eEEEEcccCCCCCCceEEEEEec
Q 045656 337 PIYNGDKSLGARNGG--RPF-VYDG-----NLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 337 PI~~~~~~~~aR~GG--~vF-~~dG-----kLyRp~QdC~~~YG~~L~l~~It 381 (802)
.++.+ .+++ .+. ..+| +|+..... .. ..+|.+.+++
T Consensus 327 ~~l~~------~~~~ys~~~~~~~g~dg~~~l~~lye~-~~--~~~I~~~~~~ 370 (382)
T 1so7_A 327 VLLAK------GSCAYSDLQSMGTGPDGSPLFGCLYEA-ND--YEEIVFLMFT 370 (382)
T ss_dssp EEEEE------EEEEEEEEEEEEECTTSSEEEEEEEEE-TT--TTEEEEEEEE
T ss_pred EEECC------CCcccceeEEcCCCCcCCcEEEEEEEC-CC--CCEEEEEEEE
Confidence 23332 1122 122 2355 77776643 22 3678887776
|
| >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=31 Score=40.71 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=101.4
Q ss_pred ceEEEEEEeCCCCCceEeeeeecC----CCceee--e---EEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeeecc
Q 045656 214 GDIGVAKSVDKGATWQQLGIALDE----DWHLSF--P---YVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIM 284 (802)
Q Consensus 214 G~I~va~S~D~g~tw~~~gvvLde----~~HLSy--P---~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll 284 (802)
+.|.+..|.|.|.+|+.... |.+ .+++.+ | .++..+|++++--... ....+++..+.=..|+......
T Consensus 446 ~~~~v~rS~DgG~TWs~p~~-l~~~~~~~~~~~~~~pg~GI~~~~~GrLv~p~~~~--~~s~v~~S~DgG~TW~~~~~~~ 522 (686)
T 2jkb_A 446 NYIAMTTSQNRGESWEQFKL-LPPFLGEKHNGTYLCPGQGLALKSSNRLIFATYTS--GELTYLISDDSGQTWKKSSASI 522 (686)
T ss_dssp CEEEEEEESSTTSCCCCCEE-CCCSSCTTSCCCEECSEECEECTTSSCEEEEEEET--TEEEEEEESSTTSSCEEEEEEC
T ss_pred cEEEEEEECCCCCcCCCCee-cccccCcccceeeeCCCcceEEccCCeEEEEEecC--CcEEEEEECCCCCeeEeCcccC
Confidence 34677889999999987653 322 111111 1 1223477776632221 3457788888777898876644
Q ss_pred C--CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccE----EEC
Q 045656 285 K--KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPF----VYD 357 (802)
Q Consensus 285 ~--~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF----~~d 357 (802)
+ .....+++++. +|+++++.... .+...+++|++--..|++....+-+.+. ..... +.++ ..+
T Consensus 523 p~~~~~~e~~ivel~dG~L~~~~R~~-------~G~~~v~~S~DgG~TWs~~~~~~~L~~p--~~g~~-~sii~~~~l~d 592 (686)
T 2jkb_A 523 PFKNATAEAQMVELRDGVIRTFFRTT-------TGKIAYMTSRDSGETWSKVSYIDGIQQT--SYGTQ-VSAIKYSQLID 592 (686)
T ss_dssp SCSSCCCCEEEEEEETTEEEEEECCS-------SSSCEEEEESSTTSSCCCCEECSSCCCC--SSCCC-CEEEEEEEEET
T ss_pred CCCCCceeeEEEEecCCEEEEEEEcC-------CCcEeEEEeCCCCCCCccccccccCcCC--CCcee-EEEEEeeecCC
Confidence 4 24567888875 89999987442 1245577877655579865433312211 01112 2222 137
Q ss_pred CeEEEEcccCCCCCCce-EEEEEec---cCCccceEEeccccCCCCCCccccccccCCCCCeEEEEeCc
Q 045656 358 GNLYRVGQDCAESYGRR-VRTFKVE---ILTKNEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGD 422 (802)
Q Consensus 358 GkLyRp~QdC~~~YG~~-L~l~~It---~Lt~~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~ 422 (802)
|++++..-+-....++. ..++-.. +-...++++...... .....-.-++.++++|.-.+++++.
T Consensus 593 G~~~ll~s~p~~~~~R~~~~l~~S~~~S~D~G~TW~~~~~i~~-~~~~~~Ys~l~~~~DG~i~ilye~g 660 (686)
T 2jkb_A 593 GKEAVILSTPNSRSGRKGGQLVVGLVNKEDDSIDWKYHYDIDL-PSYGYAYSAITELPNHHIGVLFEKY 660 (686)
T ss_dssp TEEEEEEEEECCSSSSBCEEEEEEEECTTTCCEEEEEEEESSC-TTSBCCSEEEEECTTSCEEEEEECS
T ss_pred CCEEEEEECCCCCCcceeeEEEEEEEeccCCCCcccCCeeecC-CCCCccccEEEEeCcCEEEEEEeCC
Confidence 88766553222222332 3333211 112233443321110 0111222356667787777788764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=89.27 E-value=20 Score=36.51 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=96.4
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe---CCCCCCeeEEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP---ESRAKGEVRLYR 269 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP---Ess~sg~l~LYr 269 (802)
....++++|+|--.-. ......+.++. -...+|+.... .+......-....++++|++= +......+..|.
T Consensus 117 ~~~~~~~iyv~GG~~~-~~~~~~~~~yd--~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 190 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHG-CIHHNSVERYE--PERDEWHLVAP---MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY 190 (308)
T ss_dssp EEEETTEEEEECCEET-TEECCCEEEEE--TTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE
T ss_pred EEEECCEEEEEcCCCC-CcccccEEEEC--CCCCeEeECCC---CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEe
Confidence 4566899999854311 11123444433 34568987653 232333444555699999993 222245566665
Q ss_pred eccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc
Q 045656 270 AVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN 349 (802)
Q Consensus 270 a~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~ 349 (802)
... .+|+..+.+ ..+-...+....+++.|+|.-.. +......+.+| |-....|++.+.-| .+|.
T Consensus 191 ~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~v~~y--d~~~~~W~~~~~~p--------~~r~ 254 (308)
T 1zgk_A 191 PER--NEWRMITAM-NTIRSGAGVCVLHNCIYAAGGYD---GQDQLNSVERY--DVETETWTFVAPMK--------HRRS 254 (308)
T ss_dssp TTT--TEEEECCCC-SSCCBSCEEEEETTEEEEECCBC---SSSBCCCEEEE--ETTTTEEEECCCCS--------SCCB
T ss_pred CCC--CeEeeCCCC-CCccccceEEEECCEEEEEeCCC---CCCccceEEEE--eCCCCcEEECCCCC--------CCcc
Confidence 433 578765543 33456677778899999998331 11122345554 43456798866333 2577
Q ss_pred CCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 350 GGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 350 GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
+......+|++|.+.-.....+=..+.++.+
T Consensus 255 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 255 ALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp SCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred ceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 7777788999999986544334445555555
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=88.74 E-value=21 Score=36.27 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=95.3
Q ss_pred eEEECCEEEEEEEee---eccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe---CCCCCCeeE
Q 045656 193 FYLQGNDLYLFYETK---NSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP---ESRAKGEVR 266 (802)
Q Consensus 193 ll~~~g~~ylF~E~~---~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP---Ess~sg~l~ 266 (802)
....++++|||--.. +.......+-++. -...+|+.... + +.-.+..-+...++++|++= +......+.
T Consensus 66 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d--~~~~~W~~~~~-~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 140 (308)
T 1zgk_A 66 GCVVGGLLYAVGGRNNSPDGNTDSSALDCYN--PMTNQWSPCAP-M--SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 140 (308)
T ss_dssp EEEETTEEEEECCEEEETTEEEECCCEEEEE--TTTTEEEECCC-C--SSCCBTCEEEEETTEEEEECCEETTEECCCEE
T ss_pred EEEECCEEEEECCCcCCCCCCeecceEEEEC--CCCCeEeECCC-C--CcCccccEEEEECCEEEEEcCCCCCcccccEE
Confidence 445688999985431 1111122343332 34568987653 2 22334455566799999992 222234555
Q ss_pred EEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCC
Q 045656 267 LYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLG 346 (802)
Q Consensus 267 LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~ 346 (802)
.|-... .+|+..+.+ ..+-...+....+++.|+|.-.. +......+.+| |.....|+..+.-| .
T Consensus 141 ~yd~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~y--d~~~~~W~~~~~~p--------~ 204 (308)
T 1zgk_A 141 RYEPER--DEWHLVAPM-LTRRIGVGVAVLNRLLYAVGGFD---GTNRLNSAECY--YPERNEWRMITAMN--------T 204 (308)
T ss_dssp EEETTT--TEEEECCCC-SSCCBSCEEEEETTEEEEECCBC---SSCBCCCEEEE--ETTTTEEEECCCCS--------S
T ss_pred EECCCC--CeEeECCCC-CccccceEEEEECCEEEEEeCCC---CCCcCceEEEE--eCCCCeEeeCCCCC--------C
Confidence 555432 578765543 33445667777799999997431 11123355555 43456798765333 2
Q ss_pred cccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 347 ARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 347 aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
+|.+......++++|.+.-.....+-..+..+.+
T Consensus 205 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 205 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred ccccceEEEECCEEEEEeCCCCCCccceEEEEeC
Confidence 5777777888999999985543333344555554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.72 E-value=15 Score=37.18 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=96.0
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe----CCCCCCeeEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP----ESRAKGEVRLY 268 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP----Ess~sg~l~LY 268 (802)
....++++|||--.- ......+.++. -...+|+.... + +.-....-+...++++|++= .......+..|
T Consensus 51 ~~~~~~~lyv~GG~~--~~~~~~~~~~d--~~~~~W~~~~~-~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 51 CVFWDNVVYILGGSQ--LFPIKRMDCYN--VVKDSWYSKLG-P--PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp EEEETTEEEEECCBS--SSBCCEEEEEE--TTTTEEEEEEC-C--SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEE
T ss_pred EEEECCEEEEEeCCC--CCCcceEEEEe--CCCCeEEECCC-C--CccccceeEEEECCEEEEECCCCCCCcEeeeEEEE
Confidence 445788999886542 12223444433 34568987654 2 33334455556799999992 22334556666
Q ss_pred EeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCC--CCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCC
Q 045656 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGT--TQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLG 346 (802)
Q Consensus 269 ra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~--~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~ 346 (802)
.... .+|+....+ ..+....+....+|+.|+|.-... .+. .....+.+| |-....|++.+.-| .
T Consensus 124 d~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~y--d~~~~~W~~~~~~p--------~ 189 (306)
T 3ii7_A 124 DTRT--ESWHTKPSM-LTQRCSHGMVEANGLIYVCGGSLG-NNVSGRVLNSCEVY--DPATETWTELCPMI--------E 189 (306)
T ss_dssp ETTT--TEEEEECCC-SSCCBSCEEEEETTEEEEECCEES-CTTTCEECCCEEEE--ETTTTEEEEECCCS--------S
T ss_pred eCCC--CceEeCCCC-cCCcceeEEEEECCEEEEECCCCC-CCCcccccceEEEe--CCCCCeEEECCCcc--------c
Confidence 5433 578765443 334567777788999999983210 000 002344444 44456798765323 2
Q ss_pred cccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 347 ARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 347 aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
+|.+...+..++++|.+.-.....+-..+..+.+
T Consensus 190 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 190 ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp CCBSCEEEEETTEEEEECCEETTEEBCCEEEEET
T ss_pred hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeC
Confidence 6777888888999999875433322234444444
|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=13 Score=42.16 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=97.3
Q ss_pred CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCC-CCCeeEEEEeccCCc
Q 045656 198 NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESR-AKGEVRLYRAVNFPL 275 (802)
Q Consensus 198 g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss-~sg~l~LYra~~FP~ 275 (802)
|++++-+... .........++.|+|.|.+|+....+- .+.+-|.|++. ||+++|+-.+. ..+.+.+|+..+-=.
T Consensus 173 G~l~~~~~~~-~g~~~~~~~~~~S~D~G~TW~~~~~~~---~~~~~~~v~~~~dG~l~~~~r~~~~~~~~~~~~S~DgG~ 248 (601)
T 1w8o_A 173 GRLIQQYTII-NAAGAFQAVSVYSDDHGRTWRAGEAVG---VGMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGH 248 (601)
T ss_dssp TCEEEEEEEE-CTTSCEEEEEEEESSTTSSCEECCCBC---SSCCSEEEEECTTSCEEEEECCTTCCSEEEEEEESSTTS
T ss_pred ceEEEEEEEc-CCCCceeEEEEEECCCCcCccCCCCCC---CCCCcCEEEEeCCCEEEEEEeCCCCCCCEEEEEEcCCCC
Confidence 6776655431 111123567788999999999865432 24567888875 68899975543 356788999888767
Q ss_pred Cceeeee--ccCCCccCCEEEEE---------CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC
Q 045656 276 EWKLEKI--IMKKPLVDPFMINH---------DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS 344 (802)
Q Consensus 276 ~We~~~~--Ll~~~~vDatI~~~---------dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~ 344 (802)
.|..... -+.++...++++.. ++.+.||.... . ......+.++.|.+--..|+... ++..
T Consensus 249 tW~~~~~~~~l~~p~~~~s~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~R~~~~l~~S~D~G~tW~~~~---~l~~--- 319 (601)
T 1w8o_A 249 SYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAA-S--QTSRSQGTIRMSCDDGQTWPVSK---VFQP--- 319 (601)
T ss_dssp CCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEEC-C--SSSSEEEEEEEESSTTSCCCEEE---EEEE---
T ss_pred CCCCCeecCcCCCCCccceEEEecccccCCCCCCCEEEEECCC-C--CCcccceEEEEeCCCCCCCCCce---EeCC---
Confidence 8976432 22334445677764 45565555431 1 11223678888876555797532 1211
Q ss_pred CCcccCCc--cEE-ECCeEEEEcccCCCCCCceEEEEEec
Q 045656 345 LGARNGGR--PFV-YDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 345 ~~aR~GG~--vF~-~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
.+.+. +.. .||+++.....+ +++.+.+++
T Consensus 320 ---~~~~Y~~l~~~~dg~i~~~ye~~-----~~i~~~~~~ 351 (601)
T 1w8o_A 320 ---GSMSYSTLTALPDGTYGLLYEPG-----TGIRYANFN 351 (601)
T ss_dssp ---EECCCEEEEECTTSCEEEEECCS-----SEEEEEEEC
T ss_pred ---CCCCCCeEEEcCCCeEEEEEecC-----CcceEEEec
Confidence 22332 232 388998887643 677776664
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* | Back alignment and structure |
|---|
Probab=87.06 E-value=3.6 Score=45.55 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=95.8
Q ss_pred CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-----------------CCceeeeEEEEe-CCEEEEEeCC
Q 045656 198 NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-----------------DWHLSFPYVFDY-HGQIYMMPES 259 (802)
Q Consensus 198 g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-----------------~~HLSyP~VF~~-dG~iYMiPEs 259 (802)
|++++=+...+. .++....++.|+|.|.+|+....+.+. ..+.+-|.|.+. ||+++|+-.+
T Consensus 236 Grlv~p~~~~~~-~g~~~~~v~~S~D~G~tW~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~e~~vve~~dG~l~~~~R~ 314 (449)
T 2bf6_A 236 GRIVVPVYYTNE-KGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRN 314 (449)
T ss_dssp TCEEEEEEEECT-TCCEEEEEEEESSTTSSCEECCCTTTTEECTTSCEECTTTCCCSTTCEEEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEEEEEcC-CCCEEEEEEEECCCCCceeECCccCcccccccccccccccccccCCCCCCCEEEEecCCEEEEEEEe
Confidence 676543332221 223356778899999999986643221 136788889887 6899999655
Q ss_pred CCCCeeEEEEeccCCcCceee-ee--ccCCCccCCEEEEE----CCEEEEEEeCCCCCCCCCCCcEEEEEEc----CCCC
Q 045656 260 RAKGEVRLYRAVNFPLEWKLE-KI--IMKKPLVDPFMINH----DGQYWLFGSDHSGFGTTQNGQLEIWYSS----SPFG 328 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~-~~--Ll~~~~vDatI~~~----dG~wwLF~S~~~~~g~~~n~~L~i~~Ad----SplG 328 (802)
. .+.+.+|+..+-=..|... .+ -+.++...++++.. +|+-.|+++.... ..+.+..|+++.++ .-.|
T Consensus 315 ~-~g~~~v~~S~D~G~TWs~~~~~~~~l~~~~~~~~~i~~~~~~dg~~~ll~~~p~~-~~R~~g~l~l~~s~~~gS~D~G 392 (449)
T 2bf6_A 315 L-SGYLNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKVDGKDAVIFSNPNA-RSRSNGTVRIGLINQVGTYENG 392 (449)
T ss_dssp S-SSEEEEEEESSTTSCCCSCCEEEEEEECCSSCCEEEECSSCBTTBCEEEEEEECS-SSSEEEEEEEEEEEEEEECTTS
T ss_pred C-CCCEEEEEECCCCccccCccccccccCCCCcCccEEEeecccCCceEEEEeCCCC-CCCCceEEEEEEecCCccccCC
Confidence 4 5678999998887789853 22 12345556666653 8885555543111 11223355555432 1233
Q ss_pred ------CCeeCCCCCeeeCCCCCCcccCCcc--EE-ECCeEEEEcccCCCCCCceEEEEEec
Q 045656 329 ------PWKPHKKNPIYNGDKSLGARNGGRP--FV-YDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 329 ------PW~~hp~NPI~~~~~~~~aR~GG~v--F~-~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
.|+.+. ++. ..+.+.+ .. .||+|+...- +.. .+.|.+.+++
T Consensus 393 ~~~~~~tW~~~~---~l~------~~~~~Ys~l~~~~dg~i~~lYe-~~~--~~~I~~~~~~ 442 (449)
T 2bf6_A 393 EPKYEFDWKYNK---LVK------PGYYAYSCLTELSNGNIGLLYE-GTP--SEEMSYIEMN 442 (449)
T ss_dssp CEEEEEEEEEEE---EEE------EEECCCEEEEECTTSCEEEEEC-SSS--SSCEEEEEEC
T ss_pred ccccccCcccce---EeC------CCCccCCeeEEcCCCEEEEEEE-cCC--CCeEEEEEEC
Confidence 476421 111 1223333 22 2788877773 221 2567777774
|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=0.34 Score=56.89 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCC----CcceEEEEeCCCCCCC-CCCC-----CCCCcEEEEEcCCcC-c---c
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCS----SVKEIVVVWNKGEPPK-LSDL-----DSAVPVRIRVEKQNS-L---N 618 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p----~v~kIvVVWn~~~pP~-~~~~-----~s~vPVrv~~~~~NS-L---N 618 (802)
..+.+|||.||+ +...|.+.|+.+.+.. ...|||||=|....+. ...+ .....|+++..+ |. . +
T Consensus 179 ~pkVSVVIptYN-~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N~G~a~a~ 256 (657)
T 4fix_A 179 TANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-NLGGSGGY 256 (657)
T ss_dssp CCCEEEECCBSS-CHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-CCHHHHHH
T ss_pred CCeEEEEEEecC-CHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-CCCHHHHH
Confidence 357999999999 6778888899887754 4569999988764322 1111 012468888766 52 1 1
Q ss_pred ccCccC--CCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eee
Q 045656 619 NRFKLD--PLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVG 662 (802)
Q Consensus 619 NRF~P~--~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVG 662 (802)
|+=.-. .+...|-|+.+|||+.+.++.|+...+..+++|+- +||
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg 303 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVG 303 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEE
Confidence 221110 01156899999999999999999999999998764 666
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.80 E-value=19 Score=36.58 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=92.0
Q ss_pred eEEECCEEEEEEEeee--ccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe----CCCCCCeeE
Q 045656 193 FYLQGNDLYLFYETKN--SITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP----ESRAKGEVR 266 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~--~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP----Ess~sg~l~ 266 (802)
....++++|||--.-. .......+.++. ....+|+.... .+...+..-+...++++|++= +......+.
T Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d--~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 94 LGEALNSIYVVGGREIKDGERCLDSVMCYD--RLSFKWGESDP---LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp EEEETTEEEEECCEESSTTCCBCCCEEEEE--TTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEE
T ss_pred EEEECCEEEEEeCCcCCCCCcccceEEEEC--CCCCcEeECCC---CCCcccceeEEEECCEEEEEeCCCCCCcccceEE
Confidence 4567899999865421 112233454443 34567987653 233345555666899999992 223345666
Q ss_pred EEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCC
Q 045656 267 LYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLG 346 (802)
Q Consensus 267 LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~ 346 (802)
.|.... .+|+..+.+ ..+-...+....+++.|+|.-.. +......+.+| |--...|+..+.-| .
T Consensus 169 ~yd~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~y--d~~~~~W~~~~~~p--------~ 232 (315)
T 4asc_A 169 VYDPKK--FEWKELAPM-QTARSLFGATVHDGRIIVAAGVT---DTGLTSSAEVY--SITDNKWAPFEAFP--------Q 232 (315)
T ss_dssp EEETTT--TEEEECCCC-SSCCBSCEEEEETTEEEEEEEEC---SSSEEEEEEEE--ETTTTEEEEECCCS--------S
T ss_pred EEeCCC--CeEEECCCC-CCchhceEEEEECCEEEEEeccC---CCCccceEEEE--ECCCCeEEECCCCC--------C
Confidence 665433 579765543 34556777888899999998431 11111133333 44466898765333 3
Q ss_pred cccCCccEEECCeEEEEccc
Q 045656 347 ARNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 347 aR~GG~vF~~dGkLyRp~Qd 366 (802)
+|.+......+|++|.+...
T Consensus 233 ~r~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 233 ERSSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp CCBSCEEEEETTEEEEEEEE
T ss_pred cccceeEEEECCEEEEECCc
Confidence 57777788889999998754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.79 E-value=29 Score=35.25 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=109.7
Q ss_pred EEECCEEEEEEEeeecc-CCCceEE--EEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe-----C-CCCCCe
Q 045656 194 YLQGNDLYLFYETKNSI-TMQGDIG--VAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP-----E-SRAKGE 264 (802)
Q Consensus 194 l~~~g~~ylF~E~~~~~-~~~G~I~--va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP-----E-ss~sg~ 264 (802)
...++++|||--..... .....+. +...+-...+|+.... .+...+..-+...++++|++= + ......
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP---LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC---BSSCEESCEEEEETTEEEEECCEESSTTCCBCCC
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC---CCcchhceeEEEECCEEEEEeCCcCCCCCcccce
Confidence 34578888887643211 1112221 3333334567987543 233344455666799999992 1 233355
Q ss_pred eEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC
Q 045656 265 VRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS 344 (802)
Q Consensus 265 l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~ 344 (802)
+..|.... .+|+..+.+ ..+....+....+++.|+|.-... +......+.+| |.....|++.+.-|
T Consensus 119 ~~~~d~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~y--d~~~~~W~~~~~~p------- 184 (315)
T 4asc_A 119 VMCYDRLS--FKWGESDPL-PYVVYGHTVLSHMDLVYVIGGKGS--DRKCLNKMCVY--DPKKFEWKELAPMQ------- 184 (315)
T ss_dssp EEEEETTT--TEEEECCCC-SSCCBSCEEEEETTEEEEECCBCT--TSCBCCCEEEE--ETTTTEEEECCCCS-------
T ss_pred EEEECCCC--CcEeECCCC-CCcccceeEEEECCEEEEEeCCCC--CCcccceEEEE--eCCCCeEEECCCCC-------
Confidence 55555432 479765543 344567777889999999984311 11223355555 43456799866433
Q ss_pred CCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEeccccCCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 345 LGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 345 ~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
.+|.+......++++|.+.......+=..+..+.+ ...+.++.. ..+..+..| ....+ ++.|.|+-|..
T Consensus 185 -~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~---~~~~W~~~~---~~p~~r~~~-~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 185 -TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI---TDNKWAPFE---AFPQERSSL-SLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp -SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET---TTTEEEEEC---CCSSCCBSC-EEEEE--TTEEEEEEEEE
T ss_pred -CchhceEEEEECCEEEEEeccCCCCccceEEEEEC---CCCeEEECC---CCCCcccce-eEEEE--CCEEEEECCcc
Confidence 26777778888999999986543322223333333 233344443 233444443 11112 24567776653
|
| >2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=13 Score=41.60 Aligned_cols=171 Identities=12% Similarity=0.164 Sum_probs=96.8
Q ss_pred CEEEEEEEeeecc---CCCceEEEEEEeCCCCCceEeeeeecCC-----------------CceeeeEEEEe-CCEEEEE
Q 045656 198 NDLYLFYETKNSI---TMQGDIGVAKSVDKGATWQQLGIALDED-----------------WHLSFPYVFDY-HGQIYMM 256 (802)
Q Consensus 198 g~~ylF~E~~~~~---~~~G~I~va~S~D~g~tw~~~gvvLde~-----------------~HLSyP~VF~~-dG~iYMi 256 (802)
|++++=+...... .+...+.++.|+|.|.+|+.... +..+ ...+-|.|++. +|+++|+
T Consensus 263 GrLv~p~~~~~~~~~~~g~~~~~v~~SdD~G~TW~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~~ep~vve~~dG~L~~~ 341 (471)
T 2w20_A 263 GRILIPVYTTNNVSHLNGSQSSRIIYSDDHGKTWHAGEA-VNDNRQVDGQKIHSSTMNNRRAQNTESTVVQLNNGDVKLF 341 (471)
T ss_dssp TCEEEEEEECCTTTHHHHCCEEEEEEESSTTSSCEECCC-TTTTEEETTEEECTTTCCCGGGCCCSEEEEECTTSCEEEE
T ss_pred CeEEEEEEEeccccCCCCcEEEEEEEECCCCCCcccCCc-cCcccccCccccccccccccCcCccCCEEEEcCCCeEEEE
Confidence 7876533332210 12235777889999999998765 3222 12467889887 6899998
Q ss_pred eCCCCCCeeEEEEeccCCcCceeee-e--ccCCC-ccCCEEE-EECCEEEEEEeCCCCCCCCCCCcEEEEEE-cCC-CC-
Q 045656 257 PESRAKGEVRLYRAVNFPLEWKLEK-I--IMKKP-LVDPFMI-NHDGQYWLFGSDHSGFGTTQNGQLEIWYS-SSP-FG- 328 (802)
Q Consensus 257 PEss~sg~l~LYra~~FP~~We~~~-~--Ll~~~-~vDatI~-~~dG~wwLF~S~~~~~g~~~n~~L~i~~A-dSp-lG- 328 (802)
--+ ..+.+.+|+..+.=..|.... + -+.++ +..+.|. ..+|+-+|+++... +. ....+.++.+ -|. -|
T Consensus 342 ~R~-~~G~~~v~~S~DgG~TWs~~~~~~~~l~~~~~~~s~i~~~~dG~~vll~s~p~--~~-~r~~~~l~l~~~S~D~G~ 417 (471)
T 2w20_A 342 MRG-LTGDLQVATSKDGGVTWEKDIKRYPQVKDVYVQMSAIHTMHEGKEYIILSNAG--GP-KRENGMVHLARVEENGEL 417 (471)
T ss_dssp ECC-SSSEEEEEEESSSSSSCCSCCEEEEEEECCSSCCEEEEEEETTEEEEEEEEEC--SS-SSEEEEEEEEEECSSSCE
T ss_pred EEe-CCCCEEEEEEcCCCcCCCCcccccCccCCcccccceEEEccCCCEEEEEecCC--CC-CCccceEEEEEEcCCCCc
Confidence 654 356788999988777897532 2 12233 2333332 45999777776421 11 1223445442 122 23
Q ss_pred CCeeCCCCCeeeCCCCCCcccC-CccE-EECCeEEEEcccCCC-CCCceEEEEEec
Q 045656 329 PWKPHKKNPIYNGDKSLGARNG-GRPF-VYDGNLYRVGQDCAE-SYGRRVRTFKVE 381 (802)
Q Consensus 329 PW~~hp~NPI~~~~~~~~aR~G-G~vF-~~dGkLyRp~QdC~~-~YG~~L~l~~It 381 (802)
.|.... ++.. ...+ ..+. ..||+|+........ .+...|.+.+++
T Consensus 418 tW~~~~---~i~~-----~~~~Ys~l~~~~dG~l~llye~~~~~~~~~~I~~~r~~ 465 (471)
T 2w20_A 418 TWLKHN---PIQK-----GEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSFRKFN 465 (471)
T ss_dssp EEEEEE---EEEE-----EECCCEEEEEEETTEEEEEEEECCTTBCSCEEEEEEEE
T ss_pred ccccCC---EECC-----CCccceeeEEcCCCEEEEEEEeCCCCCCcceEEEEEcC
Confidence 687532 3332 1112 2233 348999876654432 245678888885
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.67 E-value=35 Score=34.25 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=95.0
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CC--CCCeeEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SR--AKGEVRL 267 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss--~sg~l~L 267 (802)
....++++|+|--.- .......+.++ +-...+|+.... + +...+..-+...++++|++=- .. ....+..
T Consensus 104 ~~~~~~~iyv~GG~~-~~~~~~~~~~~--d~~~~~W~~~~~-~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 104 AAVLNGLLYAVGGFD-GSTGLSSVEAY--NIKSNEWFHVAP-M--NTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp EEEETTEEEEEEEEC-SSCEEEEEEEE--ETTTTEEEEECC-C--SSCCBSCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred EEEECCEEEEEcCCC-CCccCceEEEE--eCCCCeEeecCC-C--CCcccCceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence 345689999986542 11111233333 234568987653 2 323344455667999999931 11 1345555
Q ss_pred EEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCc
Q 045656 268 YRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGA 347 (802)
Q Consensus 268 Yra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~a 347 (802)
|.... .+|+..+.+ ..+....++...+++.|+|.-.. +......+.+| |--.+.|+..+.-| .+
T Consensus 178 yd~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~y--d~~~~~W~~~~~~~--------~~ 241 (302)
T 2xn4_A 178 YNATT--NEWTYIAEM-STRRSGAGVGVLNNLLYAVGGHD---GPLVRKSVEVY--DPTTNAWRQVADMN--------MC 241 (302)
T ss_dssp EETTT--TEEEEECCC-SSCCBSCEEEEETTEEEEECCBS---SSSBCCCEEEE--ETTTTEEEEECCCS--------SC
T ss_pred EeCCC--CcEEECCCC-ccccccccEEEECCEEEEECCCC---CCcccceEEEE--eCCCCCEeeCCCCC--------Cc
Confidence 55432 578765543 33456677888899999997431 11123355555 43456798765333 25
Q ss_pred ccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 348 RNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 348 R~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
|.+......+|++|.+.-.....+=..+.++.+
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 666667788999999886543333334555544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.82 E-value=38 Score=33.98 Aligned_cols=168 Identities=13% Similarity=0.088 Sum_probs=95.2
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CCCCCeeEEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SRAKGEVRLYR 269 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss~sg~l~LYr 269 (802)
....++++|+|--.-. ......+.++. -...+|+.... .+...+..-+...++++|++=- ......+..|.
T Consensus 57 ~~~~~~~lyv~GG~~~-~~~~~~~~~~d--~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 130 (302)
T 2xn4_A 57 MVYMAGLVFAVGGFNG-SLRVRTVDSYD--PVKDQWTSVAN---MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYN 130 (302)
T ss_dssp EEEETTEEEEESCBCS-SSBCCCEEEEE--TTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEECCEEEEEeCcCC-CccccceEEEC--CCCCceeeCCC---CCccccceEEEEECCEEEEEcCCCCCccCceEEEEe
Confidence 4567899999864321 11223444433 34568987653 2333344555667999999932 11123344443
Q ss_pred eccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc
Q 045656 270 AVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN 349 (802)
Q Consensus 270 a~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~ 349 (802)
. --.+|+..+.+ ..+-...+....+|+.|+|.-... ........+.+| |--...|+..+.-| .+|.
T Consensus 131 ~--~~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~y--d~~~~~W~~~~~~p--------~~r~ 196 (302)
T 2xn4_A 131 I--KSNEWFHVAPM-NTRRSSVGVGVVGGLLYAVGGYDV-ASRQCLSTVECY--NATTNEWTYIAEMS--------TRRS 196 (302)
T ss_dssp T--TTTEEEEECCC-SSCCBSCEEEEETTEEEEECCEET-TTTEECCCEEEE--ETTTTEEEEECCCS--------SCCB
T ss_pred C--CCCeEeecCCC-CCcccCceEEEECCEEEEEeCCCC-CCCccccEEEEE--eCCCCcEEECCCCc--------cccc
Confidence 2 23578765543 334556677778999999973210 000112344444 44466798765333 2577
Q ss_pred CCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 350 GGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 350 GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
+......++++|.+.-.....+-..+..+.+
T Consensus 197 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 197 GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp SCEEEEETTEEEEECCBSSSSBCCCEEEEET
T ss_pred cccEEEECCEEEEECCCCCCcccceEEEEeC
Confidence 7777888999999986544333345666655
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=49 Score=38.93 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=69.6
Q ss_pred eEEEEEEeCCCCCceEeeeeec---CCCceee--e---EEEEe---CCEEEEEeCCCCCCeeEEEEeccCCcCceeeeec
Q 045656 215 DIGVAKSVDKGATWQQLGIALD---EDWHLSF--P---YVFDY---HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKII 283 (802)
Q Consensus 215 ~I~va~S~D~g~tw~~~gvvLd---e~~HLSy--P---~VF~~---dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~L 283 (802)
.|.+..|+|+|.+|+....+.+ ..++.-+ | .+.++ +|++++--.........+++..+.=..|+.....
T Consensus 427 ~i~v~~S~DgG~TWs~p~~l~~~~~~~~~~~~~gpG~gI~l~d~~~~GrLv~p~~~~~~~~s~i~~SdDgG~TW~~~~~~ 506 (679)
T 2sli_A 427 YLAMRYSDDEGASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELGFMYSDDHGDNWTYVEAD 506 (679)
T ss_dssp EEEEEEESSTTSSCCCCEECGGGCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEESSCSEEEEEESSTTSSCEEEECC
T ss_pred EEEEEEeCCCCccCCCCcccCcccCccccceecCCCceEEecCCCCCCEEEEEEEecCCCEEEEEEECCCCCceEeCccC
Confidence 4678899999999987664332 1122111 1 11222 3776653222222456678888877789876654
Q ss_pred cC--CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 284 MK--KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 284 l~--~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
.+ ....+++|++. +|+.+|+.-.. .+...+++|++-=..|++..
T Consensus 507 ~p~~~~~~e~~vve~~dG~L~~~~R~~-------~G~~~v~~S~DgG~TWt~~~ 553 (679)
T 2sli_A 507 NLTGGATAEAQIVEMPDGSLKTYLRTG-------SNCIAEVTSIDGGETWSDRV 553 (679)
T ss_dssp CCCSCCCCCEEEEECTTSCEEEEECCS-------SSSCEEEEESSTTSSCCCCE
T ss_pred CCCCCCccceEEEEeCCCEEEEEEEeC-------CCCEEEEEEcCCCcCCCCCc
Confidence 43 35788999987 79999887431 23556777776555798754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.63 E-value=42 Score=33.58 Aligned_cols=166 Identities=12% Similarity=0.177 Sum_probs=97.2
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCC---ceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CCCCCeeE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGAT---WQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SRAKGEVR 266 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~t---w~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss~sg~l~ 266 (802)
....++++|+|--.-. ......+-++. -...+ |+.... .+...+.+-+...++++|++=- ......+.
T Consensus 58 ~~~~~~~l~v~GG~~~-~~~~~~~~~~d--~~~~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 131 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDG-RSRLSSVECLD--YTADEDGVWYSVAP---MNVRRGLAGATTLGDMIYVSGGFDGSRRHTSME 131 (301)
T ss_dssp EEEETTEEEEECCBCS-SCBCCCEEEEE--TTCCTTCCCEEECC---CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEE
T ss_pred EEEECCEEEEEcCCCC-CccCceEEEEE--CCCCCCCeeEECCC---CCCCccceeEEEECCEEEEEcccCCCcccceEE
Confidence 3457889998765321 11223454443 23445 987643 3334555666667999999931 12234555
Q ss_pred EEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCC
Q 045656 267 LYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLG 346 (802)
Q Consensus 267 LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~ 346 (802)
.|-.. -.+|+..+.+ ..+....+....+|+.|+|.-.. +......+.+| |-..+.|++.+.-| .
T Consensus 132 ~~d~~--~~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~--d~~~~~W~~~~~~p--------~ 195 (301)
T 2vpj_A 132 RYDPN--IDQWSMLGDM-QTAREGAGLVVASGVIYCLGGYD---GLNILNSVEKY--DPHTGHWTNVTPMA--------T 195 (301)
T ss_dssp EEETT--TTEEEEEEEC-SSCCBSCEEEEETTEEEEECCBC---SSCBCCCEEEE--ETTTTEEEEECCCS--------S
T ss_pred EEcCC--CCeEEECCCC-CCCcccceEEEECCEEEEECCCC---CCcccceEEEE--eCCCCcEEeCCCCC--------c
Confidence 55432 3579876543 34456677777899999997321 11123345554 43456898765322 2
Q ss_pred cccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 347 ARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 347 aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
+|.+......++++|.+.-.....+=..+.++.+
T Consensus 196 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 196 KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred ccccceEEEECCEEEEEeCCCCCcccceEEEEeC
Confidence 5777777888999999986554433345555554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.12 E-value=46 Score=33.76 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=89.6
Q ss_pred eEEECCEEEEEEEeee-ccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe----CCCCCCeeEE
Q 045656 193 FYLQGNDLYLFYETKN-SITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP----ESRAKGEVRL 267 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~-~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP----Ess~sg~l~L 267 (802)
....++++|||--.-. .......+.++ +-...+|+.... .+...+..-+...++++|++= +......+..
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~y--d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCY--DPVAAKWSEVKN---LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEE--ETTTTEEEEECC---CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEE
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEE--eCCCCCEeECCC---CCCcccccEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 4456899999876421 11111233333 234568987653 333344445566899999993 2223455666
Q ss_pred EEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCc
Q 045656 268 YRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGA 347 (802)
Q Consensus 268 Yra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~a 347 (802)
|-... .+|+..+.+ ..+-...+....+|+.|+|.-.. +......+.+| |-....|+..+.-| .+
T Consensus 180 yd~~~--~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~y--d~~~~~W~~~~~~p--------~~ 243 (318)
T 2woz_A 180 YNPKK--GDWKDLAPM-KTPRSMFGVAIHKGKIVIAGGVT---EDGLSASVEAF--DLKTNKWEVMTEFP--------QE 243 (318)
T ss_dssp EETTT--TEEEEECCC-SSCCBSCEEEEETTEEEEEEEEE---TTEEEEEEEEE--ETTTCCEEECCCCS--------SC
T ss_pred EcCCC--CEEEECCCC-CCCcccceEEEECCEEEEEcCcC---CCCccceEEEE--ECCCCeEEECCCCC--------Cc
Confidence 65433 579766543 33445667777899999998321 01011133333 44467899876433 25
Q ss_pred ccCCccEEECCeEEEEccc
Q 045656 348 RNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 348 R~GG~vF~~dGkLyRp~Qd 366 (802)
|.+......+|++|.+.-.
T Consensus 244 r~~~~~~~~~~~i~v~GG~ 262 (318)
T 2woz_A 244 RSSISLVSLAGSLYAIGGF 262 (318)
T ss_dssp CBSCEEEEETTEEEEECCB
T ss_pred ccceEEEEECCEEEEECCe
Confidence 7777778889999998654
|
| >4hbs_A Putative hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.80A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=81.56 E-value=23 Score=39.29 Aligned_cols=39 Identities=21% Similarity=0.592 Sum_probs=30.8
Q ss_pred CEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 291 PFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 291 atI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
..+.++.++|+|+++.. ..+.++.+++|++|.|||....
T Consensus 298 ~~~~~~~~~yv~~~~~~-----~~~~~I~~~tA~sP~GPWs~p~ 336 (416)
T 4hbs_A 298 PWVFKKGDTYYMIGQSM-----WFGRDVLMFRSKHPYGPFVDQK 336 (416)
T ss_dssp EEEEEETTEEEEEEECT-----TTCSEEEEEEESSSSSCCEEEE
T ss_pred EEEEccCCEEEEEEeCC-----CCCCCEEEEECCCCCCCCCCCE
Confidence 34667799999999863 1245899999999999998744
|
| >2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* | Back alignment and structure |
|---|
Probab=80.36 E-value=12 Score=41.69 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=69.1
Q ss_pred eCeeeEEE-CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeee---eecCCC-ceeeeEE-EEeCCEEEEE---eCC
Q 045656 189 ADPFFYLQ-GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGI---ALDEDW-HLSFPYV-FDYHGQIYMM---PES 259 (802)
Q Consensus 189 ADPFll~~-~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gv---vLde~~-HLSyP~V-F~~dG~iYMi---PEs 259 (802)
.+|-+++. +|+++|++-. ..|.+.+++|.|.|.+|+.... -|.++. ..| .| ...+|+..|+ |..
T Consensus 326 ~ep~vve~~dG~L~~~~R~-----~~G~~~v~~S~DgG~TWs~~~~~~~~l~~~~~~~s--~i~~~~dG~~vll~s~p~~ 398 (471)
T 2w20_A 326 TESTVVQLNNGDVKLFMRG-----LTGDLQVATSKDGGVTWEKDIKRYPQVKDVYVQMS--AIHTMHEGKEYIILSNAGG 398 (471)
T ss_dssp CSEEEEECTTSCEEEEECC-----SSSEEEEEEESSSSSSCCSCCEEEEEEECCSSCCE--EEEEEETTEEEEEEEEECS
T ss_pred cCCEEEEcCCCeEEEEEEe-----CCCCEEEEEEcCCCcCCCCcccccCccCCcccccc--eEEEccCCCEEEEEecCCC
Confidence 57888854 7898887632 3578999999999999986532 233322 222 23 2458876665 654
Q ss_pred CCCCeeEEEE---eccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeC
Q 045656 260 RAKGEVRLYR---AVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSD 306 (802)
Q Consensus 260 s~sg~l~LYr---a~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~ 306 (802)
.......||- ..+--..|....++-..+..-++++.. ||+.+++|..
T Consensus 399 ~~r~~~~l~l~~~S~D~G~tW~~~~~i~~~~~~Ys~l~~~~dG~l~llye~ 449 (471)
T 2w20_A 399 PKRENGMVHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEH 449 (471)
T ss_dssp SSSEEEEEEEEEECSSSCEEEEEEEEEEEEECCCEEEEEEETTEEEEEEEE
T ss_pred CCCccceEEEEEEcCCCCcccccCCEECCCCccceeeEEcCCCEEEEEEEe
Confidence 4444556653 234334687655443345555777664 8999999965
|
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=80.29 E-value=0.37 Score=57.67 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCcc---eEEEEeCCCCCCC-----CC-------------CCCCCCcEEEEE
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVK---EIVVVWNKGEPPK-----LS-------------DLDSAVPVRIRV 611 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~---kIvVVWn~~~pP~-----~~-------------~~~s~vPVrv~~ 611 (802)
..+.+|+|-+|+.....|++.|+.+.+..+-+ ||+||=++..... +. .+....+++++.
T Consensus 139 ~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~ 218 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYST 218 (802)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEE
Confidence 45799999999854455688888886654433 7888865432111 00 011123566665
Q ss_pred cCCcC---ccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeeccccc
Q 045656 612 EKQNS---LNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPRL 667 (802)
Q Consensus 612 ~~~NS---LNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R~ 667 (802)
.++|. -.++-.-....+.|-|+.+|+|..++++.|+.....-.++|+- +|+...+.
T Consensus 219 ~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~ 278 (802)
T 4hg6_A 219 RERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFF 278 (802)
T ss_dssp CSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCB
T ss_pred ecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEE
Confidence 55441 2222222345678999999999999999999999988888864 56654443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 802 | ||||
| d1omza_ | 265 | c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf | 1e-26 | |
| d1oyga_ | 440 | b.67.2.2 (A:) Levansucrase {Bacillus subtilis [Tax | 3e-11 | |
| d1uv4a1 | 291 | b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus | 1e-08 | |
| d2exha2 | 322 | b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal do | 2e-05 | |
| d1wl7a1 | 312 | b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermo | 8e-05 | |
| d1y7ba2 | 321 | b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal do | 1e-04 | |
| d1yrza2 | 317 | b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-termina | 6e-04 |
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 107 bits (268), Expect = 1e-26
Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
Query: 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDL-----DSAVPVR 608
FT++ T++ R L + HY S+ +++VVWN +L +PV
Sbjct: 3 DSFTLIMQTYN-RTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVI 61
Query: 609 IRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLV 668
+ + N + NR ++ P ++T VL +DDD +++ D+ F +W+Q PD+I+GF PR
Sbjct: 62 FKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKH 121
Query: 669 NGSPLRYRGEKY-------ARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKF 721
+ Y+M+L GA+F +S+ + + +Q A +D+
Sbjct: 122 VSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSK--YLELFQKQPAAVHALIDET 179
Query: 722 FNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISR-NTQVHYHKRSECLRKFA 780
NC+D+ +N+L + + +V+P ++ K + + H+ +RS C+ K
Sbjct: 180 QNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWHRAEHFLQRSYCINKLV 239
Query: 781 EMYG 784
+Y
Sbjct: 240 NIYD 243
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} Length = 440 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Score = 64.0 bits (155), Expect = 3e-11
Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 190 DPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY 249
DP + YL +E G + + G + S +
Sbjct: 214 DPHYVEDKGHKYLVFEANT-----GTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSD 268
Query: 250 HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLV-----DPFMINHDGQYWLFG 304
+ + A G + + + K+ K ++ V + +G+++LF
Sbjct: 269 KKRTAEL----ANGALGMIELNDDYTLKKVMKPLIASNTVTDEIERANVFKMNGKWYLFT 324
Query: 305 SDHSGFGTTQ-----NGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY 356
T + + + S+S GP+KP K + + F Y
Sbjct: 325 DSRGSKMTIDGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLK---MDLDPNDVTFTY 378
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} Length = 291 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 30/210 (14%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 191 PFFYLQGNDLYLFYETKNSITMQGDIGVAKS-VDKGATWQQLGIAL----DEDWHLSFPY 245
P +L+Y + + IG+A S W+ G+ + +++ P
Sbjct: 74 PDIQYYNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPE 133
Query: 246 VFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKK------PLVDPFMINHDGQ 299
+ + ++L + ++ + L P + +G
Sbjct: 134 LTFDKDGNPWLAFGSFWSGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGY 193
Query: 300 YWLFGS-DHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN-------GG 351
Y+L S D G ++ S S GP+ + G ++ GG
Sbjct: 194 YYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDKSGKSMLEGGGTILDSGNDQWKGPGG 253
Query: 352 RPFVYDGNLYRVGQDCAESYGRRVRTFKVE 381
+ V L R D ++ ++ +
Sbjct: 254 QDIVNGNILVRHAYDANDNGIPKLLINDLN 283
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} Length = 322 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 43/306 (14%), Positives = 74/306 (24%), Gaps = 47/306 (15%)
Query: 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSF--- 243
F DP G+D Y+ T + + S D W+ + L+ L+
Sbjct: 10 FHPDPSICRVGDDYYIAVSTFE---WFPGVRIYHSKD-LKNWRLVARPLNRLSQLNMIGN 65
Query: 244 --------PYVFDYHGQIYMMPESRAKGEVRLYRAVNFPL-------EWKLEKIIMKKPL 288
P++ G+ +++ E + N+ + W +
Sbjct: 66 PDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGF 125
Query: 289 VDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348
+ DG+ +L + + I K + I L
Sbjct: 126 DPSLFHDEDGRKYLVNM-YWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRIT 184
Query: 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKE---------LEGRNAWNG 399
G + +G Y + + Y + L RN
Sbjct: 185 EGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQK 244
Query: 400 ARYHHLDAQQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKC 459
A H + EW V R L + LG
Sbjct: 245 A--GHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCP-------------LGRETA 289
Query: 460 IIPLNW 465
I L W
Sbjct: 290 IQRLEW 295
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Length = 312 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Score = 43.0 bits (100), Expect = 8e-05
Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 31/251 (12%)
Query: 159 WRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGV 218
W + +P + + P YL+Y IG+
Sbjct: 56 WENMGRVFPSLPDW---CKQYVPEKDEDHLWAPDICFYNGIYYLYYSVSTFGKNTSVIGL 112
Query: 219 AKSVDKGAT-----WQQLGIALDEDWHLSF----PYVFDYHGQIYMMPESRAKGEVRLYR 269
A + W+ +G + ++ P V + ++L +
Sbjct: 113 ATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSFWSGIQLIQ 172
Query: 270 AVNFPLEWKLEKIIMKKPLVD--------PFMINHDGQYWLFGS-DHSGFGTTQNGQLEI 320
++ + ++ PF++ +G Y+LF S D G ++ +
Sbjct: 173 LDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAV 232
Query: 321 WYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRP-------FVYDGN---LYRVGQDCAES 370
S GP+ + G ++ R + G L D ++
Sbjct: 233 GRSKDITGPYVDKNGVSMMQGGGTILDAGNDRWIGPGHCAVYFSGVSAILVNHAYDALKN 292
Query: 371 YGRRVRTFKVE 381
++ +
Sbjct: 293 GEPTLQIRPLY 303
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 321 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 34/268 (12%), Positives = 66/268 (24%), Gaps = 34/268 (12%)
Query: 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSF--- 243
F DP D Y+ T + + S D W + L+ L
Sbjct: 9 FNPDPSICRADTDYYIATSTFE---WFPGVQIHHSKD-LVNWHLVAHPLNRTSLLDMKGN 64
Query: 244 --------PYVFDYHGQIYMMPESRAKGEVRLYRAVNF------PLEWKLEKIIMKKPLV 289
P + + G+ +++ + N+ + I +
Sbjct: 65 PNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGF 124
Query: 290 DPFM-INHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348
D + ++DG+ +L + T + I K K I +
Sbjct: 125 DASLFHDNDGKKYLVNM-YWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYT 183
Query: 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYK---------ELEGRNAWNG 399
G + Y + +Y + + + + RN+
Sbjct: 184 EGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQK 243
Query: 400 ARYHHLDAQQLSSGEWIAVMDGDRALSG 427
H + EW R L
Sbjct: 244 C--GHASLVHTHTDEWYLAHLVGRPLPV 269
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Score = 40.3 bits (93), Expect = 6e-04
Identities = 39/267 (14%), Positives = 71/267 (26%), Gaps = 30/267 (11%)
Query: 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSF--- 243
F DP G+D Y+ T + + S D W+ + L L
Sbjct: 10 FHPDPSIVRVGDDYYIATSTFE---WFPGVRIHHSRD-LKHWRFVSSPLTRTSQLDMKGN 65
Query: 244 --------PYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKL------EKIIMKKPLV 289
P + + G Y++ + A N+ + + + I +
Sbjct: 66 MNSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSSGF 125
Query: 290 DP-FMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348
DP + DG+ WL + + I K +
Sbjct: 126 DPSLFHDDDGRKWLVN-MIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLT 184
Query: 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKE-------LEGRNAWNGAR 401
G + DG Y + + Y + + + + G+ +
Sbjct: 185 EGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQPELALQK 244
Query: 402 YHHLDAQQLSSGEWIAVMDGDRALSGD 428
H + +GEW R L G
Sbjct: 245 AGHGSLVETQNGEWYLAHLCGRPLKGK 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 802 | |||
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 99.89 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 99.7 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 99.66 | |
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 99.65 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 99.58 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 99.49 | |
| d1gyha_ | 318 | alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: | 99.39 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 99.29 | |
| d1oyga_ | 440 | Levansucrase {Bacillus subtilis [TaxId: 1423]} | 98.92 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 98.87 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 98.6 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 98.55 | |
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 98.51 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 98.44 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 97.97 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 97.56 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 97.46 | |
| d1gyha_ | 318 | alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: | 97.43 | |
| d1oyga_ | 440 | Levansucrase {Bacillus subtilis [TaxId: 1423]} | 97.3 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 96.38 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 95.15 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 92.63 | |
| d2b4wa1 | 310 | Hypothetical protein LmjF10.1260 {Leishmania major | 92.54 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 91.77 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 90.62 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 88.47 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 87.37 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 86.59 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 84.68 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 83.83 | |
| d2slia2 | 483 | Leech intramolecular trans-sialidase, C-terminal d | 83.66 |
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=2.4e-22 Score=193.08 Aligned_cols=238 Identities=24% Similarity=0.475 Sum_probs=179.6
Q ss_pred CceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC-----CCCCCcEEEEEcCCcCccccCccCCCCC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD-----LDSAVPVRIRVEKQNSLNNRFKLDPLIK 628 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~-----~~s~vPVrv~~~~~NSLNNRF~P~~~I~ 628 (802)
++|||||.||+ |...|++.|+.+.+.++..+|+||||+.+...... .+..+.+.+..+......+|....+..+
T Consensus 3 ~~~tvii~tyn-~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~ 81 (265)
T d1omza_ 3 DSFTLIMQTYN-RTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVE 81 (265)
T ss_dssp TCEEEEEEESS-CHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTCC
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhhhHHhCC
Confidence 68999999998 78999999999999999999999999976665531 1233445555555566899999999999
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCC------ccccee-cccCcccceeeccceeeehhh
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLR------YRGEKY-ARRHKGYNMILTGAAFVDSQI 701 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~------y~~~~y-~~~~~~YSMVLTgaAF~Hr~Y 701 (802)
+|.|+.+|||..++++.|+...+.|+++|+-+|+...+.+...... +..... ..+...+..++.+++|+|+.+
T Consensus 82 ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 161 (265)
T d1omza_ 82 TNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKY 161 (265)
T ss_dssp SSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTSCCCSSSSSCCBSEECTTEEEEETHH
T ss_pred cCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceecccccccccCCcccccccccccccccccccccceeccceeEecHHH
Confidence 9999999999999999999999999999999999998876422111 000111 124567889999999999987
Q ss_pred hhhhccchhHHHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCCc-c-cccccCCCCchhhHHHHHHHHH
Q 045656 702 AFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKF-S-GVAISRNTQVHYHKRSECLRKF 779 (802)
Q Consensus 702 ~~~~Y~~~~p~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~-s-g~~iS~~~~~H~~~Rs~Cln~F 779 (802)
+..+... ...++.+.++...|+|+.|.+......+.+.+....+.+....... . -.+++. ...|+.+|+.|||.|
T Consensus 162 -~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~i~~f 238 (265)
T d1omza_ 162 -LELFQKQ-PAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWH-RAEHFLQRSYCINKL 238 (265)
T ss_dssp -HHHHHTS-CHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECCSSEEECC-------------CHHHHHHHHHHHHH
T ss_pred -HHHHhhh-HHHHhhhhhhhcchHHHHHHHHHHHhcCCceeeeeccEEEEEeeecccccccccc-CccHHHHHHHHHHHH
Confidence 4444332 3567888899999999999999999998876554444433222111 1 123343 468999999999999
Q ss_pred HHHhCCCCceeeeecc
Q 045656 780 AEMYGSFAGRKWEFGG 795 (802)
Q Consensus 780 ~~~fG~mPL~~~~f~~ 795 (802)
+++||+|||+.++++.
T Consensus 239 ~~~f~~mPL~~s~i~~ 254 (265)
T d1omza_ 239 VNIYDGMPLKYSNIMI 254 (265)
T ss_dssp HHHHTSCCCCCBCEEE
T ss_pred HHHHCcCcHHHHHHHH
Confidence 9999999999887764
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=99.70 E-value=2.2e-16 Score=165.38 Aligned_cols=180 Identities=23% Similarity=0.338 Sum_probs=123.8
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
++||||. .++|||++++.+++||||.+.+... ..|.+++|.| +.+|+..+.||+..
T Consensus 2 ~~NPi~~-----------~~~aDP~v~~~~~~yY~~~tt~~~~---~g~~i~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~ 66 (322)
T d2exha2 2 IKNPILT-----------GFHPDPSICRVGDDYYIAVSTFEWF---PGVRIYHSKD-LKNWRLVARPLNRLSQLNMIGNP 66 (322)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTEE---SBCEEEEESS-SSSCEEEECCBCSTTTCCCTTCC
T ss_pred ccCCCCC-----------CCCCCCEEEEECCEEEEEEcCCCCC---CCcEEEECCC-cCCcEEcccccccccccccCCCc
Confidence 5799988 4789999999999999999875432 2488899887 99999999887532
Q ss_pred --CceeeeEEEEeCCEEEEEeC--C-----CCCCeeEEEEeccCCcCc--------------------------------
Q 045656 239 --WHLSFPYVFDYHGQIYMMPE--S-----RAKGEVRLYRAVNFPLEW-------------------------------- 277 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPE--s-----s~sg~l~LYra~~FP~~W-------------------------------- 277 (802)
.++|+|.|+.++|++||+-- . ...+...+..+.+....|
T Consensus 67 ~~~~~WAPev~~~~G~yylyys~~~~~~~~~~~~~~~~~~sd~~~gp~~~~~~~~~~~~dp~~f~d~dG~~Yl~~~~~~~ 146 (322)
T d2exha2 67 DSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDH 146 (322)
T ss_dssp TTCBBCSCEEEEETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCCSCSCCEEEECTTSCEEEEEEEECC
T ss_pred ccCCcccceEEEECCEEEEEEEeecccCCCccccceEEEecCCCCCCcccceEecCCCCCCCeEEEcCCCEEEEecccCC
Confidence 35899999999999999821 0 111222222221100011
Q ss_pred --------------------eee--ee-ccC----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 278 --------------------KLE--KI-IMK----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 278 --------------------e~~--~~-Ll~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
+.. .+ +.+ ...++|.|++++|+||||+|.. +...++.+.+++|++++|||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~YYl~~s~~---~~~~~y~v~~~rS~~~~GP~ 223 (322)
T d2exha2 147 RVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEG---GTRYNHAATIARSTSLYGPY 223 (322)
T ss_dssp CTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESSTTCCC
T ss_pred ccCcCCccceEEeeecCcCCeECCCcEEEEEecCCCcccCcEEEEECCEEEEEEeCC---CCCCCceEEEEEeCCCCccc
Confidence 100 00 111 1369999999999999999873 33356789999999999999
Q ss_pred eeCCCCCeeeCCCCC---CcccC-CccEEE-CCeEEEEcc
Q 045656 331 KPHKKNPIYNGDKSL---GARNG-GRPFVY-DGNLYRVGQ 365 (802)
Q Consensus 331 ~~hp~NPI~~~~~~~---~aR~G-G~vF~~-dGkLyRp~Q 365 (802)
++++.|||+...... ...+| +.+|.. +|+.|....
T Consensus 224 ~~~~~~pi~~~~~~~~~~~~g~GH~~~v~~~dg~w~~~yh 263 (322)
T d2exha2 224 EVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHL 263 (322)
T ss_dssp EECTTCCSEESTTCTTCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred ccCCCceEeccCCCCCCCccCCCeEEEEECCCCCEEEEEE
Confidence 999999999753110 01222 455654 788888654
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.66 E-value=1.8e-15 Score=157.26 Aligned_cols=196 Identities=19% Similarity=0.252 Sum_probs=132.5
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
++||||. .++|||++++.+++||||++..... ..|.+++|+| +.+|++++.+|+..
T Consensus 1 ~~NPv~~-----------~~~aDP~v~~~~~~yY~~~tt~~~~---~gi~i~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~ 65 (321)
T d1y7ba2 1 IKNPILR-----------GFNPDPSICRADTDYYIATSTFEWF---PGVQIHHSKD-LVNWHLVAHPLNRTSLLDMKGNP 65 (321)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTEE---SBCEEEEESS-SSSCEEEECSBCSTTTCCCTTCC
T ss_pred CCCCcCC-----------CCCCCCEEEEECCEEEEEEecCCCC---CCeEEEECCC-ccCCEEccccccCCcccccCCCc
Confidence 4799998 3679999999999999999864322 2588899877 99999999887542
Q ss_pred --CceeeeEEEEeCCEEEEEeCC-----CCCCeeEEEEec-cCCc-Cce-------------------------------
Q 045656 239 --WHLSFPYVFDYHGQIYMMPES-----RAKGEVRLYRAV-NFPL-EWK------------------------------- 278 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiPEs-----s~sg~l~LYra~-~FP~-~We------------------------------- 278 (802)
-++|+|.|++++|++||+--. .......++.++ +.|. .|+
T Consensus 66 ~~~~~WAP~v~~~~g~yylyys~~~~~~~~~~~~~~~~a~a~~p~Gp~~~~~~~~~~~~D~~~~~d~dg~~~~~~~~~~~ 145 (321)
T d1y7ba2 66 NSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQ 145 (321)
T ss_dssp TTCEECSCEEEEETTEEEEEEEEESCCSSSCCCEEEEEEEESSTTSCCCCCEECCCSCSCCEEEECTTSCEEEEEEEECC
T ss_pred ccCcccCceEEEECCEEEEEEEeeccCCCCccceeeEeeecCCCCCCcccceeecccccCCcEEEEcCCCEEEEEeccCC
Confidence 359999999999999998311 111122222221 1111 111
Q ss_pred ---------------------ee--e-eccC---C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 279 ---------------------LE--K-IIMK---K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 279 ---------------------~~--~-~Ll~---~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
.. . .+.+ . -.++|.|++++|+||||+|.. .....+.+.+++|++++|||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~yyl~~s~~---~~~~~y~~~~~rs~~~~Gp~ 222 (321)
T d1y7ba2 146 RTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEG---GTTYEHSETVARSKNIDGPY 222 (321)
T ss_dssp CTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESSTTCCC
T ss_pred CccccCccceeeEeeCCCcceEcCCceEEeeccCCCccccceEEEECCEEEEEEcCC---CCCCCcceEEEEEcccCCcc
Confidence 00 0 0111 1 269999999999999999874 22345688999999999999
Q ss_pred eeCCCCCeeeCCCC---CCcccC-CccEEE-CCeEEEEcccCC---------------CCCCceEEEEEec
Q 045656 331 KPHKKNPIYNGDKS---LGARNG-GRPFVY-DGNLYRVGQDCA---------------ESYGRRVRTFKVE 381 (802)
Q Consensus 331 ~~hp~NPI~~~~~~---~~aR~G-G~vF~~-dGkLyRp~QdC~---------------~~YG~~L~l~~It 381 (802)
++.+.+|++..... ....+| +.+|.. +|+.|...+-.. ...||.+.|.+|+
T Consensus 223 ~~~~~~p~~~~~~~~~~~~~g~GH~~~v~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~~~gR~~~l~~~~ 293 (321)
T d1y7ba2 223 EIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIE 293 (321)
T ss_dssp EECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCCCCCSSCTTTCCCCCTTCSEEEEEEEE
T ss_pred ccCCCCceeeeecCCCCCcccCCEEEEEECCCCCEEEEEEeecCCCCCCccceecccccccccEEEEEEEE
Confidence 99999999864211 111233 555655 789988765211 1226888888885
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.4e-15 Score=157.20 Aligned_cols=199 Identities=19% Similarity=0.271 Sum_probs=137.0
Q ss_pred CCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC-----
Q 045656 164 AAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED----- 238 (802)
Q Consensus 164 ~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~----- 238 (802)
+.|..+||+|. ||.+++.+|+||||.+..... -.|.+++|.| +.+|+..+.+|+++
T Consensus 1 ~~~~~~~~~ih---------------DP~vi~~~g~YY~~~t~~~~~---~g~~i~~S~D-L~~W~~~g~~~~~~~~~~~ 61 (291)
T d1uv4a1 1 AFWGASNELLH---------------DPTMIKEGSSWYALGTGLTEE---RGLRVLKSSD-AKNWTVQKSIFTTPLSWWS 61 (291)
T ss_dssp CEEEEEEEECS---------------SCEEEEETTEEEEEEECCTTS---SBEEEEEESS-SSSCEEEEEETSSCCGGGG
T ss_pred CccCCCCCccc---------------CCEEEEECCEEEEEEecCCCC---CcEEEEECCC-CCCCEECcccccCCccccc
Confidence 35777888864 899999999999999875432 2488999877 99999999888653
Q ss_pred -------CceeeeEEEEeCCEEEEEeC----CCCCCeeEEEEeccCCc-Cceee--------------------------
Q 045656 239 -------WHLSFPYVFDYHGQIYMMPE----SRAKGEVRLYRAVNFPL-EWKLE-------------------------- 280 (802)
Q Consensus 239 -------~HLSyP~VF~~dG~iYMiPE----ss~sg~l~LYra~~FP~-~We~~-------------------------- 280 (802)
-++|+|.|..++|++||+-. ......+.+..+.+-|. .|+..
T Consensus 62 ~~~~~~~~~~WAP~v~~~~g~yylyy~~~~~~~~~~~i~~a~s~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~dG~ 141 (291)
T d1uv4a1 62 NYVPNYGQNQWAPDIQYYNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGN 141 (291)
T ss_dssp GTSTTCCSBCEEEEEEEETTEEEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSC
T ss_pred ccCCccCCcccceEEEEECCEEEEEEEecCCCCCcceEEEEEeCCCCCCCCCcCccccccccCCCCCccCceEEEecCCc
Confidence 46899999999999999932 12233444555544332 34311
Q ss_pred -------------------------e---eccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCC
Q 045656 281 -------------------------K---IIMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSP 326 (802)
Q Consensus 281 -------------------------~---~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSp 326 (802)
. .+.. ..++.|.|++++|+||||+|...+. +...++.+.+++|++|
T Consensus 142 ~Y~~~~~~~~~i~i~~l~~~~~~~~g~~~~i~~~~~~~~~~EgP~i~k~~g~Yyl~~S~~~~~~~~~~~y~v~~~~s~~~ 221 (291)
T d1uv4a1 142 PWLAFGSFWSGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSI 221 (291)
T ss_dssp EEEEECBSTTCEEEEEECTTTCSEEEEEEEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESST
T ss_pred EEEEecccCCceEEEeeccccccCcCceeEEEecCCCCccccccEEEEECCEEEEEEecCcccCCCCCCceeEEEEcCCC
Confidence 0 0111 1257899999999999999874332 2233446789999999
Q ss_pred CCCCeeCCCCCeeeCCC-------CCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEec
Q 045656 327 FGPWKPHKKNPIYNGDK-------SLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~~-------~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
+|||++++.+|++.+.. .....+|+.-|+.+.-++.-++++....++.+.+.+|+
T Consensus 222 ~GP~~~~~~~~~~~~~~~~~~~~~~~~~gpgh~~~~~~~~~~yH~~~~~~~~~r~~~~~~l~ 283 (291)
T d1uv4a1 222 TGPYLDKSGKSMLEGGGTILDSGNDQWKGPGGQDIVNGNILVRHAYDANDNGIPKLLINDLN 283 (291)
T ss_dssp TCCCBCTTSCBGGGTCCEEEECCCSSEEEEEEEEEETTTEEEEEEEETTTTTEEEEEEEECB
T ss_pred CCCCccCCCCceecCCCeeeecCCCCEEeCCCcCeecCCEEEEEeeeCCCCCeEEEEEEEEE
Confidence 99999999999876421 11123455556655555556777776666777777764
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=99.58 E-value=2.5e-14 Score=148.91 Aligned_cols=244 Identities=18% Similarity=0.213 Sum_probs=153.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC---------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED--------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~--------- 238 (802)
++||||. .++|||.+++.+++||||.+..+.. ..|.+++|+| +.+|+.++.+|...
T Consensus 2 ~~NPv~~-----------~~~aDP~vi~~~~~yY~~~tt~~~~---~gi~i~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~ 66 (317)
T d1yrza2 2 IQNPILP-----------GFHPDPSIVRVGDDYYIATSTFEWF---PGVRIHHSRD-LKHWRFVSSPLTRTSQLDMKGNM 66 (317)
T ss_dssp EESCSBC-----------SSCCSCEEEEETTEEEEEECCBTEE---SBCEEEEESS-SSSCEEEECSBCSTTTCCCTTCC
T ss_pred ccCCCCC-----------CCCCCCEEEEECCEEEEEEccCCCC---CCeEEEECCC-CCCCeECCccccCccccccCCCc
Confidence 5799988 3679999999999999998764332 2488899888 99999999887532
Q ss_pred --CceeeeEEEEeCCEEEEEe-----CCCCCCeeEEEEec-cCCc-CceeeeeccCCCccCCEEEEE-CCEEEEEEeCCC
Q 045656 239 --WHLSFPYVFDYHGQIYMMP-----ESRAKGEVRLYRAV-NFPL-EWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHS 308 (802)
Q Consensus 239 --~HLSyP~VF~~dG~iYMiP-----Ess~sg~l~LYra~-~FP~-~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~ 308 (802)
.++|+|.|.+++|++||+- .........++.++ +-|. .|+. +..++...+|+++|.. ||+.||+++...
T Consensus 67 ~~~~~WAP~v~~~~G~~ylyy~~~~~~~~~~~~~~~~~~~a~~p~gp~~~-~~~~~~~~iDp~~f~D~dG~~Yl~~~~~~ 145 (317)
T d1yrza2 67 NSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSD-PIYLNSSGFDPSLFHDDDGRKWLVNMIWD 145 (317)
T ss_dssp TTCEECSCEEEEETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCC-CEECCCSCSCCEEEECTTSCEEEEEEEEC
T ss_pred ccceeecceEEEECCEEEEEEEEeccCCCCcccceEEEEecCCCCCCccc-eeeecCCccCCcEEEecCCCEEEEEeccC
Confidence 3589999999999999992 22333334444333 2333 4643 3335667899999975 899999886532
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccc
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNE 387 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~ 387 (802)
. .........+..+..-...++....-..+..........|..+|+.+|++|++.-.+...+...+.+.+.+.++ +++
T Consensus 146 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~yyl~~s~~~~~~~y~v~~~~s~~~~Gp~~ 224 (317)
T d1yrza2 146 Y-RKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYE 224 (317)
T ss_dssp C-CTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCCE
T ss_pred c-CCCCccccceeeeecCcccCeEcCCceEEEeccCCCcccCceEEEECCEEEEEEccCCCCCcceEEEEEECCCCCccc
Confidence 1 11111122333332112222211100111111112346788889999999997766555567788889988775 544
Q ss_pred eEEec------cccCCCCCCccccccccCCCCCeEEEEeCcccCCCC
Q 045656 388 YKELE------GRNAWNGARYHHLDAQQLSSGEWIAVMDGDRALSGD 428 (802)
Q Consensus 388 y~E~~------~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~~~ 428 (802)
.+... ........+..|-++-+-++|+|+++.-+.+-..++
T Consensus 225 ~~~~~p~~~~~~~~~~~~~g~GH~s~~~~~dG~~~~~~h~~~~~~~~ 271 (317)
T d1yrza2 225 TDPSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHLCGRPLKGK 271 (317)
T ss_dssp ECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCBTTT
T ss_pred cCCCcceeccCCCCcCCcccCCccEEEECCCCeEEEEEEEeeCCCCC
Confidence 33221 111222234556678777888999888877755443
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=99.49 E-value=3.3e-13 Score=139.57 Aligned_cols=188 Identities=19% Similarity=0.279 Sum_probs=120.0
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-------------CCceeeeEEEEeCCE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-------------DWHLSFPYVFDYHGQ 252 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-------------~~HLSyP~VF~~dG~ 252 (802)
.+.+||++++.+|+||||.+. ..|.+++|+| +.+|+..+.+|+. .-++|+|.|...+|+
T Consensus 22 ~~~~DP~i~~~~g~yY~~~t~-------~gi~i~~S~D-L~nW~~~g~~l~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~ 93 (312)
T d1wl7a1 22 LWAHDPVIAKEGSRWYVFHTG-------SGIQIKTSED-GVHWENMGRVFPSLPDWCKQYVPEKDEDHLWAPDICFYNGI 93 (312)
T ss_dssp CBCSSCEEEEETTEEEEEESE-------ETCEEEEESS-SSEEEEEEESCSSCCTTHHHHCTTCCSCEEEEEEEEEETTE
T ss_pred cCcCCCEEEEECCEEEEEEec-------CCceEEEcCC-CCCceECcccccCCcccccccCCcccCCceEcceEEEeCCE
Confidence 588999999999999998653 3688899977 9999999988853 256999999999999
Q ss_pred EEEEeCC--CCCCeeEEEEe--c----cCCc-C----------------------------------cee--------e-
Q 045656 253 IYMMPES--RAKGEVRLYRA--V----NFPL-E----------------------------------WKL--------E- 280 (802)
Q Consensus 253 iYMiPEs--s~sg~l~LYra--~----~FP~-~----------------------------------We~--------~- 280 (802)
+||+-.. ...+...++.+ . +-|. . |.. +
T Consensus 94 yyl~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iD~~~f~d~dG~~y~~~~~~~~~i~~~~l 173 (312)
T d1wl7a1 94 YYLYYSVSTFGKNTSVIGLATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSFWSGIQLIQL 173 (312)
T ss_dssp EEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBSTTCEEEEEB
T ss_pred EEEEEEeecCCcccceeeEEEEecccCCCCccccccccceecCCCCCCCCcCCCceeEccCCcEEEeecCCCCceeEEEE
Confidence 9998211 00111111000 0 0000 0 000 0
Q ss_pred -----------eecc------C-CCccCCEEEEECCEEEEEEeCCC-CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeC
Q 045656 281 -----------KIIM------K-KPLVDPFMINHDGQYWLFGSDHS-GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNG 341 (802)
Q Consensus 281 -----------~~Ll------~-~~~vDatI~~~dG~wwLF~S~~~-~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~ 341 (802)
+.+. + ..++.|.|++++|+||||+|... ..+...+..+.+++|++++|||++.+.+|+...
T Consensus 174 ~~d~~~~~~~~~~i~~~~~~~~~~~~EgP~v~k~~g~yYl~ys~~~~~~~~~~~~~~~~a~s~~~~GP~~~~~~~~~~~~ 253 (312)
T d1wl7a1 174 DTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDKNGVSMMQG 253 (312)
T ss_dssp CTTTCSBCTTCCCEEEECCSSSSCCEEEEEEEEETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTCCCBCTTCCBGGGT
T ss_pred cCcCCcCcCCceEEEecccCCCCCcccccEEEEECCcEEEEEecCCCcCCCCCCceEEEEecCCCCcccccCCCCccCcC
Confidence 0000 0 12699999999999999998531 122334567899999999999999998887754
Q ss_pred CCCC-------Cccc-CCccEEECCeEEEE--cccCCCCCCceEEEEEec
Q 045656 342 DKSL-------GARN-GGRPFVYDGNLYRV--GQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 342 ~~~~-------~aR~-GG~vF~~dGkLyRp--~QdC~~~YG~~L~l~~It 381 (802)
.... ...+ ++.+|..+++.|.+ +.++....++.+.+.+|+
T Consensus 254 ~~~~~~~~~~~~~gpGH~s~~~~~~~~~~~yH~~~~~~~~~R~~~~~~v~ 303 (312)
T d1wl7a1 254 GGTILDAGNDRWIGPGHCAVYFSGVSAILVNHAYDALKNGEPTLQIRPLY 303 (312)
T ss_dssp CCEEEECCCSSEEEEEEEEEEEETTEEEEEEEEEETTTTTEEEEEEEECE
T ss_pred CCceeecCCCCEEeCCCcEEEEeCCcEEEEEEeecCCCCCcEEEEEEEEE
Confidence 2110 1112 35567776666654 333333344556666663
|
| >d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: alpha-L-arabinanase species: Cellvibrio cellulosa [TaxId: 155077]
Probab=99.39 E-value=6.7e-12 Score=128.63 Aligned_cols=189 Identities=21% Similarity=0.352 Sum_probs=124.8
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------------CceeeeEEEEeCCE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------------WHLSFPYVFDYHGQ 252 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------------~HLSyP~VF~~dG~ 252 (802)
..-++||++++.+|+||||.+. ..|.+.+|+| +.+|+..+.+|... .++|+|.|+.++|+
T Consensus 4 ~~~~~DP~v~~~~g~yYl~~t~-------~gi~~~~S~D-LvnW~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~ 75 (318)
T d1gyha_ 4 QVDVHDPVMTREGDTWYLFSTG-------PGITIYSSKD-RVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGL 75 (318)
T ss_dssp CCCCSSCEEEEETTEEEEEESE-------ETCEEEEESS-SSEEEEEEESSSSCCTTHHHHCTTCCSEEEEEEEEEETTE
T ss_pred cccCCCCEEEEECCEEEEEEee-------CCEEEEECCC-CCCCeECCccccCCccccccCCCcCCCceECCEEEEEcCc
Confidence 3457899999999999998764 2578899887 99999999888642 36899999999999
Q ss_pred EEEEeCC----C------------------------------------------------CCCeeEEEEec---------
Q 045656 253 IYMMPES----R------------------------------------------------AKGEVRLYRAV--------- 271 (802)
Q Consensus 253 iYMiPEs----s------------------------------------------------~sg~l~LYra~--------- 271 (802)
+||+--. . .+|+..++-..
T Consensus 76 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~v~~d~dG~~Yl~~~~~~~~~~~~~ 155 (318)
T d1gyha_ 76 FYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSFWGGLKLFK 155 (318)
T ss_dssp EEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEEEEECBSTTCEEEEE
T ss_pred eEEEEEEecCCCcccceeEEEEeccCCCccccccccCceecccCCCCCCCceEccceEeecCCcEEEeccCCCCCeeeEe
Confidence 9998211 0 01111111000
Q ss_pred --------cCCcCceeee----ecc-------CCCccCCEEEEECCEEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCe
Q 045656 272 --------NFPLEWKLEK----IIM-------KKPLVDPFMINHDGQYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWK 331 (802)
Q Consensus 272 --------~FP~~We~~~----~Ll-------~~~~vDatI~~~dG~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~ 331 (802)
..+..|.... .++ ...+++|.|++++|+||||+|.... ......+.+.+++|++++|||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~g~yyl~yS~~~~~~~~~~~y~~~~~~s~~~~Gp~~ 235 (318)
T d1gyha_ 156 LNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGPYL 235 (318)
T ss_dssp BCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEETTEEEEEEEESCCSCGGGCCCEEEEEEESSTTSCCB
T ss_pred cCccceeeccccccccccccccceeeccCCCCCceeecCEEEEECCEEEEEEecCCCCCCCcccceeeeecccCCCCCcc
Confidence 0000000000 000 0136889999999999999986421 1222456788999999999999
Q ss_pred eCCCCCeeeCCC--------CCCcccCCccEEECCeEEEEcc--cCCCCCCceEEEEEec
Q 045656 332 PHKKNPIYNGDK--------SLGARNGGRPFVYDGNLYRVGQ--DCAESYGRRVRTFKVE 381 (802)
Q Consensus 332 ~hp~NPI~~~~~--------~~~aR~GG~vF~~dGkLyRp~Q--dC~~~YG~~L~l~~It 381 (802)
..+.+|+..... ...+..++.+|..+|+.|.+.+ +....+++.+.+.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~GH~s~~~~~g~~~~~yH~~~~~~~~~R~~~i~~v~ 295 (318)
T d1gyha_ 236 DKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDGKDYLVLHAYEAADNYLQKLKILNLH 295 (318)
T ss_dssp CTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEETTEEEEEEEEEEGGGTTEEEEEEEECE
T ss_pred cCCCCccccCCCceeecCCCceEeCCccEEEEeCCCEEEEEEeEcCCCCCCcEEEEEEEE
Confidence 888887654311 1111234667777999888754 4455688888888885
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=99.29 E-value=8.5e-11 Score=121.81 Aligned_cols=190 Identities=18% Similarity=0.220 Sum_probs=122.7
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEE-eCCEEEEEeC--
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFD-YHGQIYMMPE-- 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~-~dG~iYMiPE-- 258 (802)
..++| |.+...+|++||||.+.+... ....|.++++.+....|+.... ...+...|.+|. .||+.||+=-
T Consensus 69 ~~~WA-P~v~~~~G~~ylyy~~~~~~~~~~~~~~~~~~~a~~p~gp~~~~~~---~~~~~iDp~~f~D~dG~~Yl~~~~~ 144 (317)
T d1yrza2 69 GGIWA-PCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIY---LNSSGFDPSLFHDDDGRKWLVNMIW 144 (317)
T ss_dssp CEECS-CEEEEETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEE---CCCSCSCCEEEECTTSCEEEEEEEE
T ss_pred ceeec-ceEEEECCEEEEEEEEeccCCCCcccceEEEEecCCCCCCccceee---ecCCccCCcEEEecCCCEEEEEecc
Confidence 34677 999999999999998754322 2456777777665567876543 244567899986 5789999831
Q ss_pred --CCCCCe-eEEEEeccCCcCceeee---eccC---C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCC
Q 045656 259 --SRAKGE-VRLYRAVNFPLEWKLEK---IIMK---K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328 (802)
Q Consensus 259 --ss~sg~-l~LYra~~FP~~We~~~---~Ll~---~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplG 328 (802)
...... ..+..+..-+..++... .+.+ . -.++|.|++++|+||||+|.. +....+.+.+++|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~yyl~~s~~---~~~~~y~v~~~~s~~~~G 221 (317)
T d1yrza2 145 DYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEG---GTEYEHAATLARSQSIDG 221 (317)
T ss_dssp CCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEES---CSSTTCEEEEEEESSTTC
T ss_pred CcCCCCccccceeeeecCcccCeEcCCceEEEeccCCCcccCceEEEECCEEEEEEccC---CCCCcceEEEEEECCCCC
Confidence 111111 12222222234444322 1332 1 379999999999999999874 233456899999999999
Q ss_pred CCeeCCCCCeeeCCCC---CCcccC-CccEEE-CCeEEEEcccCC------CCCCceEEEEEec
Q 045656 329 PWKPHKKNPIYNGDKS---LGARNG-GRPFVY-DGNLYRVGQDCA------ESYGRRVRTFKVE 381 (802)
Q Consensus 329 PW~~hp~NPI~~~~~~---~~aR~G-G~vF~~-dGkLyRp~QdC~------~~YG~~L~l~~It 381 (802)
||++.+.+||+..... ....+| +.+|.. ||+.|....-.. ...||.+.+.+|+
T Consensus 222 p~~~~~~~p~~~~~~~~~~~~~g~GH~s~~~~~dG~~~~~~h~~~~~~~~~~~~~R~~~i~~~~ 285 (317)
T d1yrza2 222 PYETDPSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVN 285 (317)
T ss_dssp CCEECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEEEECCBTTTBCTTCSEEEEEEEE
T ss_pred ccccCCCcceeccCCCCcCCcccCCccEEEECCCCeEEEEEEEeeCCCCCccCCccEEEEEEEE
Confidence 9999999999875311 112233 445554 788877553211 1235888888885
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Probab=98.92 E-value=5.4e-09 Score=114.72 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=104.3
Q ss_pred ceeeCeeeEEECCEEEEEEEeeecc-CCCceEEEE----EEeCCCCCc---eEeeeeecC--------------------
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSI-TMQGDIGVA----KSVDKGATW---QQLGIALDE-------------------- 237 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va----~S~D~g~tw---~~~gvvLde-------------------- 237 (802)
..|+=+-++..||+++|||+..... .....|..+ .+++.+..| +...++++.
T Consensus 128 ~eWSGSAv~~~DG~~~LfYTg~~~~~~~~q~i~~a~~~~~~d~~~~~~~~~~~~~~l~~pDG~~Yqt~~q~~~~~~~~~~ 207 (440)
T d1oyga_ 128 QEWSGSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG 207 (440)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEGGGTTEEEEEEEEEEEEECSSCEEEEEEEEEEEEECCCSSSBCCHHHHHHHTGGGGT
T ss_pred ccCccceEEccCCeEEEEEEeccCCCCCcceEEEEEEEEeecCCcceeecccCCceeecCCCccceeeecccccCCCCCC
Confidence 4566455666799999999975332 233444433 234444443 333345543
Q ss_pred -CCceeeeEEEEeCCEEEEEeCCCC--------------------------------------------CCeeEEEEecc
Q 045656 238 -DWHLSFPYVFDYHGQIYMMPESRA--------------------------------------------KGEVRLYRAVN 272 (802)
Q Consensus 238 -~~HLSyP~VF~~dG~iYMiPEss~--------------------------------------------sg~l~LYra~~ 272 (802)
.+|+-.|+||+++|+.||+-|+.. .+.|.|+++.+
T Consensus 208 d~~~fRDP~v~~~~g~~y~~fegn~~~~~G~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~ng~I~l~~~s~ 287 (440)
T d1oyga_ 208 DNHTLRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELND 287 (440)
T ss_dssp CCCCCEEEEEEEETTEEEEEEEEEBCTTSCCSSGGGGGBGGGTCSCHHHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECT
T ss_pred CcccccCCceeeeCCeEEEEEeccccccccccccchhccccccccccccccccccccccccccccceeccceEEEEEeCC
Confidence 357889999999999999987532 24577888888
Q ss_pred CCcCceeeeeccCC-----CccCCEEEEECCEEEEEEeCCCC-C---CCC-CCCcEEEEEEcCCCCCCeeCCCCC
Q 045656 273 FPLEWKLEKIIMKK-----PLVDPFMINHDGQYWLFGSDHSG-F---GTT-QNGQLEIWYSSSPFGPWKPHKKNP 337 (802)
Q Consensus 273 FP~~We~~~~Ll~~-----~~vDatI~~~dG~wwLF~S~~~~-~---g~~-~n~~L~i~~AdSplGPW~~hp~NP 337 (802)
.+.+||..+.|++. ..+.|.|++++|+||||++.+.. + +.. .+..+..|++|+++|||+|...+=
T Consensus 288 D~~~We~~~pLl~a~~v~d~~ErP~I~~~nGKYYLFtss~~~~~a~~~~~~~~~~~~g~Vsdsl~Gpy~PlN~sG 362 (440)
T d1oyga_ 288 DYTLKKVMKPLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVSNSLTGPYKPLNKTG 362 (440)
T ss_dssp TSSEEEEEEEEEECTTTCSCCEEEEEEEETTEEEEEEEEEGGGCCCTTCCTTCEEEEEEEESSTTCCCEEGGGTS
T ss_pred CcccceecCcceeccCCCCeEECCEEEEECCEEEEEEecccccccCCCcCCCCceEEEEECCCCCCCCeecCCCc
Confidence 88999998877652 47889999999999999975311 1 111 222466899999999999876543
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=5.8e-08 Score=102.35 Aligned_cols=211 Identities=11% Similarity=0.111 Sum_probs=132.5
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee-eee--c------CCC
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG-IAL--D------EDW 239 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g-vvL--d------e~~ 239 (802)
.||+||..++-.. ..-| .|=+++.+|++||+|..-+ ..++..|++|+|.| |.+|+... .++ + +..
T Consensus 30 ~NPil~~~~~~~~---~~vf-Np~~i~~~g~~~ll~r~~~-~~~~~~ig~A~S~D-Gi~w~~~~~pv~~p~~~~~~~~~~ 103 (327)
T d1vkda_ 30 KNPIIGRNPVPKG---ARVF-NSAVVPYNGEFVGVFRIDH-KNTRPFLHFGRSKD-GINWEIEPEEIQWVDVNGEPFQPS 103 (327)
T ss_dssp TCCSBCBSCSTTE---EEEE-EEEEEEETTEEEEEEEEEE-TTSCEEEEEEEESS-SSSCEECSSCCCEECTTSCBCCCS
T ss_pred CCccccCCCCcch---hcee-ccEEEEECCEEEEEEEecC-CCCceEEEEEEcCC-ccCCEeCCCCeecCCCCCcccccC
Confidence 6999998765432 2233 5999999999999987644 34678899999987 89998543 333 1 234
Q ss_pred ceeeeEEEEeCCEEEEEeCC-CCCCeeEEEEeccCCcCceeeeeccCCCccCCEEE--EECCEEEEEEeCCCCCCCCCCC
Q 045656 240 HLSFPYVFDYHGQIYMMPES-RAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMI--NHDGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 240 HLSyP~VF~~dG~iYMiPEs-s~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~--~~dG~wwLF~S~~~~~g~~~n~ 316 (802)
+.-.|.|++++|++||+--+ .....+.+.+..+| ..|+....+....--|+++| +.+|+|+||+....... ....
T Consensus 104 gv~DPrv~~~~d~yym~yt~~~~~~~i~lA~S~D~-~~w~k~g~~~~~~~kd~~lfpeki~Gky~ml~Rp~~~~~-~~~~ 181 (327)
T d1vkda_ 104 YAYDPRVVKIEDTYYITFCTDDHGPTIGVGMTKDF-KTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRPSDNGH-TPFG 181 (327)
T ss_dssp SEEEEEEEEETTEEEEEEEEESSSEEEEEEEESSS-SSEEEECCSSSSSEEEEEECSSCBTTBEEEEEEECCSSS-CSCC
T ss_pred cEEcceEEEECCEEEEEEEecCCCcEEEEEEecCc-chheecCCccCccccCceEeeeeccCeEEEEEeeccCCC-cccc
Confidence 67789999999999998643 33456788888888 78987666555555677777 44999999986532211 1223
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeCCC-----CCCcccCCccEEECCeEEEEc-cc--CCC--CCCceEEEEEeccCCcc
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNGDK-----SLGARNGGRPFVYDGNLYRVG-QD--CAE--SYGRRVRTFKVEILTKN 386 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~~~-----~~~aR~GG~vF~~dGkLyRp~-Qd--C~~--~YG~~L~l~~It~Lt~~ 386 (802)
++.+++|+++. .|+.|. +++.... ......|..++..+..++.+. +. +.. .|.-++.++..+ +|+
T Consensus 182 ~I~la~S~Dl~-~W~~~~--~v~~~~~~~~wd~~~vG~gpppI~t~~Gwl~iYHgv~~~~~~~~Y~~g~~lld~~--dP~ 256 (327)
T d1vkda_ 182 DIFLSESPDMI-HWGNHR--FVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLD--DPS 256 (327)
T ss_dssp CEEEEEESSSS-CBEEEE--EEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECSS--CTT
T ss_pred eEEEEcCCCcc-cccccc--eecccCCCCceeeeeecCCCCcEEccCcEEEEEEeccccCCCcEEEEEEEEecCC--CCc
Confidence 56677766654 698764 3332110 111234556676654444443 22 112 355555554443 455
Q ss_pred ceEEec
Q 045656 387 EYKELE 392 (802)
Q Consensus 387 ~y~E~~ 392 (802)
+.-.+.
T Consensus 257 kvi~r~ 262 (327)
T d1vkda_ 257 KVLYRS 262 (327)
T ss_dssp SEEEEB
T ss_pred eeEEcC
Confidence 444433
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.60 E-value=4.7e-07 Score=92.82 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=123.7
Q ss_pred eeecCCCceeeeEEEEeCCEEEEEeCCCC-CCeeEEEEeccCCcCceeeeeccC-------------CCccCCEEEEECC
Q 045656 233 IALDEDWHLSFPYVFDYHGQIYMMPESRA-KGEVRLYRAVNFPLEWKLEKIIMK-------------KPLVDPFMINHDG 298 (802)
Q Consensus 233 vvLde~~HLSyP~VF~~dG~iYMiPEss~-sg~l~LYra~~FP~~We~~~~Ll~-------------~~~vDatI~~~dG 298 (802)
+||... ...|.|++++|.+||+..+.. ...+.+|+++++ ..|+.+...++ ..+..|.|++++|
T Consensus 4 Pv~~~~--~aDP~v~~~~~~yY~~~tt~~~~~gi~i~~S~DL-v~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~~g 80 (321)
T d1y7ba2 4 PILRGF--NPDPSICRADTDYYIATSTFEWFPGVQIHHSKDL-VNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDG 80 (321)
T ss_dssp CSBCSS--CCSCEEEEETTEEEEEECCBTEESBCEEEEESSS-SSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEEETT
T ss_pred CcCCCC--CCCCEEEEECCEEEEEEecCCCCCCeEEEECCCc-cCCEEccccccCCcccccCCCcccCcccCceEEEECC
Confidence 355543 279999999999999987643 357999999997 57997654221 1388999999999
Q ss_pred EEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCCCC-------eeeCCC---------------------------
Q 045656 299 QYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKKNP-------IYNGDK--------------------------- 343 (802)
Q Consensus 299 ~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~NP-------I~~~~~--------------------------- 343 (802)
+|||++|.... .+...+..+.+++|++++|||+.+...+ +..+++
T Consensus 81 ~yylyys~~~~~~~~~~~~~~~~a~a~~p~Gp~~~~~~~~~~~~D~~~~~d~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (321)
T d1y7ba2 81 KFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEY 160 (321)
T ss_dssp EEEEEEEEESCCSSSCCCEEEEEEEESSTTSCCCCCEECCCSCSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEE
T ss_pred EEEEEEEeeccCCCCccceeeEeeecCCCCCCcccceeecccccCCcEEEEcCCCEEEEEeccCCCccccCccceeeEee
Confidence 99999986322 1222233577899999999997654221 111100
Q ss_pred ------------------CCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEecc--c------cCC
Q 045656 344 ------------------SLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELEG--R------NAW 397 (802)
Q Consensus 344 ------------------~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~~--~------~~w 397 (802)
....-.|..+|+.+|++|+..-.+.......+.+.+.+.++. -|....+ . ..-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~yyl~~s~~~~~~~y~~~~~rs~~~~G-p~~~~~~~p~~~~~~~~~~ 239 (321)
T d1y7ba2 161 SDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDG-PYEIDPEYPLLTSWHDPRN 239 (321)
T ss_dssp ETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTC-CCEECTTCCSEECTTCTTC
T ss_pred CCCcceEcCCceEEeeccCCCccccceEEEECCEEEEEEcCCCCCCCcceEEEEEcccCC-ccccCCCCceeeeecCCCC
Confidence 001124555788899999988777666777888999887753 2333221 1 110
Q ss_pred CCCCccccccccCCCCCeEEEEeCcc
Q 045656 398 NGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 398 ~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
.-.+.+|-++-+-++|+|+.+.=+.+
T Consensus 240 ~~~g~GH~~~v~~~~g~~~~~~h~~~ 265 (321)
T d1y7ba2 240 SLQKCGHASLVHTHTDEWYLAHLVGR 265 (321)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred CcccCCEEEEEECCCCCEEEEEEeec
Confidence 11245676887778889998886555
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=98.55 E-value=8.1e-07 Score=91.73 Aligned_cols=191 Identities=17% Similarity=0.246 Sum_probs=126.4
Q ss_pred eeecCCCceeeeEEEEeCCEEEEEeCCCC-CCeeEEEEeccCCcCceeeeeccC-------------CCccCCEEEEECC
Q 045656 233 IALDEDWHLSFPYVFDYHGQIYMMPESRA-KGEVRLYRAVNFPLEWKLEKIIMK-------------KPLVDPFMINHDG 298 (802)
Q Consensus 233 vvLde~~HLSyP~VF~~dG~iYMiPEss~-sg~l~LYra~~FP~~We~~~~Ll~-------------~~~vDatI~~~dG 298 (802)
+||... ...|.|+++++.+||+.-+.. ...+.+++++++ ..|+.+...++ ..+..|.|++++|
T Consensus 5 Pi~~~~--~aDP~v~~~~~~yY~~~tt~~~~~g~~i~~S~DL-v~W~~~g~~~~~~~~~~~~~~~~~~~~WAPev~~~~G 81 (322)
T d2exha2 5 PILTGF--HPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDL-KNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDG 81 (322)
T ss_dssp CSBCSS--CCSCEEEEETTEEEEEECCBTEESBCEEEEESSS-SSCEEEECCBCSTTTCCCTTCCTTCBBCSCEEEEETT
T ss_pred CCCCCC--CCCCEEEEECCEEEEEEcCCCCCCCcEEEECCCc-CCcEEcccccccccccccCCCcccCCcccceEEEECC
Confidence 456543 369999999999999986533 457999999987 67987654221 1378899999999
Q ss_pred EEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCC---C---C--eeeCCC--------------------------
Q 045656 299 QYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKK---N---P--IYNGDK-------------------------- 343 (802)
Q Consensus 299 ~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~---N---P--I~~~~~-------------------------- 343 (802)
+|||+|+.... .+...+....+++|+++.|||+++.. + | ++.++.
T Consensus 82 ~yylyys~~~~~~~~~~~~~~~~~~sd~~~gp~~~~~~~~~~~~dp~~f~d~dG~~Yl~~~~~~~~~~~~~~~~~~~~~~ 161 (322)
T d2exha2 82 KFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEY 161 (322)
T ss_dssp EEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCCSCSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEE
T ss_pred EEEEEEEeecccCCCccccceEEEecCCCCCCcccceEecCCCCCCCeEEEcCCCEEEEecccCCccCcCCccceEEeee
Confidence 99999975321 22223345668899999999975321 0 1 110000
Q ss_pred ------------------CCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEec----cccC--CC
Q 045656 344 ------------------SLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKELE----GRNA--WN 398 (802)
Q Consensus 344 ------------------~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~~----~~~~--w~ 398 (802)
......|..+|+.+|++|++.-.|....+..|.+.+.+.++ +++.++.. .... -.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~YYl~~s~~~~~~~y~v~~~rS~~~~GP~~~~~~~pi~~~~~~~~~~ 241 (322)
T d2exha2 162 SVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNP 241 (322)
T ss_dssp ETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEESTTCTTCS
T ss_pred cCcCCeECCCcEEEEEecCCCcccCcEEEEECCEEEEEEeCCCCCCCceEEEEEeCCCCcccccCCCceEeccCCCCCCC
Confidence 01123566778889999998877766677889999998765 54332221 0000 00
Q ss_pred CCCccccccccCCCCCeEEEEeCcccCC
Q 045656 399 GARYHHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 399 ~~~~Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
-.+.+|-++-+.++|+|+++.=+.|-.+
T Consensus 242 ~~g~GH~~~v~~~dg~w~~~yh~~~~~~ 269 (322)
T d2exha2 242 LQKAGHASIVHTHTDEWFLVHLTGRPLP 269 (322)
T ss_dssp SEEEEEEEEEECTTSCEEEEEEEECCCC
T ss_pred ccCCCeEEEEECCCCCEEEEEEEccCCC
Confidence 1245676888888899999998777543
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=98.51 E-value=7.9e-07 Score=90.64 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=89.9
Q ss_pred eeEEEEeCCEEEEEeCCC-CCCeeEEEEeccCCcCceeeeeccC--------------CCccCCEEEEECCEEEEEEeCC
Q 045656 243 FPYVFDYHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLEKIIMK--------------KPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~~~Ll~--------------~~~vDatI~~~dG~wwLF~S~~ 307 (802)
.|.|++++|++||+-.+. ....+.+|++.++ ..|+.+..++. ..+..|.|++++|+||||++..
T Consensus 12 DP~vi~~~g~YY~~~t~~~~~~g~~i~~S~DL-~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~yylyy~~~ 90 (291)
T d1uv4a1 12 DPTMIKEGSSWYALGTGLTEERGLRVLKSSDA-KNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYYNGKYWLYYSVS 90 (291)
T ss_dssp SCEEEEETTEEEEEEECCTTSSBEEEEEESSS-SSCEEEEEETSSCCGGGGGTSTTCCSBCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCEEEEEEecCCCCCcEEEEECCCC-CCCEECcccccCCcccccccCCccCCcccceEEEEECCEEEEEEEec
Confidence 899999999999997543 3456999999887 78998654332 1255589999999999999874
Q ss_pred CCCCCCCCCcEEEEEEcC-CCCCCeeCCCCCeeeCCCCCCccc--CCccEEE-CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 308 SGFGTTQNGQLEIWYSSS-PFGPWKPHKKNPIYNGDKSLGARN--GGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 308 ~~~g~~~n~~L~i~~AdS-plGPW~~hp~NPI~~~~~~~~aR~--GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
. .......+++++|++ +.|||+++. +++.... ....+ -..+|.+ ||+.|+.... .+.++.+.+++.
T Consensus 91 ~--~~~~~~~i~~a~s~~~~~Gpw~~~~--~~~~~~~-~~~~~~iDp~vf~D~dG~~Y~~~~~----~~~~i~i~~l~~ 160 (291)
T d1uv4a1 91 S--FGSNTSAIGLASSTSISSGGWKDEG--LVIRSTS-SNNYNAIDPELTFDKDGNPWLAFGS----FWSGIKLTKLDK 160 (291)
T ss_dssp C--TTCSCEEEEEEEESCTTTTCCEEEE--EEEEECT-TSSSCCCSCEEEECTTSCEEEEECB----STTCEEEEEECT
T ss_pred C--CCCCcceEEEEEeCCCCCCCCCcCc--ccccccc-CCCCCccCceEEEecCCcEEEEecc----cCCceEEEeecc
Confidence 2 112234678899988 689999764 3332211 11122 2577875 7899998743 355688888853
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=2e-06 Score=88.98 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=106.3
Q ss_pred CCceeeCeee-EEECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFF-YLQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFl-l~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||=. +..+|+|||||--...... .-..++|+|.| +.+|+++++||..+ .
T Consensus 11 ~~gw~NDPnG~~~~~G~yHlfyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~al~p~--------------------~- 68 (294)
T d1uypa2 11 ITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDD-LVHWRHLPVALYPD--------------------D- 68 (294)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETTSSSSCSCEEEEEEESS-SSSCEEEEEEECCS--------------------S-
T ss_pred CCCCcCCCccceEECCEEEEEEecCCCCCCCCCcEEEEEEeCC-cCCeEECCcccccc--------------------c-
Confidence 4579999995 5899999999986544333 33588899887 99999999887421 0
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCC--CCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQ--NGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~--n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
+ ...+...+++..+|+++||||......... .....+++++. ...|++.+.|||
T Consensus 69 -----------------d------~~g~~sGsav~~~g~~~~~yT~~~~~~~~~~~~~~~~~a~s~d-g~~w~k~~~npv 124 (294)
T d1uypa2 69 -----------------E------THGVFSGSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPV 124 (294)
T ss_dssp -----------------T------TEEEEEEEEEEETTEEEEEEEEEECCCSSCCCEEEEEEEEESS-SSCCEECTTCCS
T ss_pred -----------------C------CCCeEEEEEEecCCeEEEEEEEeeCCCCCCcceeeeEEEECCC-CCceEeecCCce
Confidence 0 001234456678999999998532111111 11334565554 668999999999
Q ss_pred eeCCCCCCc---ccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 339 YNGDKSLGA---RNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 339 ~~~~~~~~a---R~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
+...+.... | -..||..+|+.|+..--....=...+.+++.++|..|+|....
T Consensus 125 i~~~~~~~~~~fR-DP~V~~~~g~w~M~~g~~~~~~~G~i~ly~S~Dl~~W~~~g~l 180 (294)
T d1uypa2 125 ISKPPEEGTHAFR-DPKVNRSNGEWRMVLGSGKDEKIGRVLLYTSDDLFHWKYEGAI 180 (294)
T ss_dssp BCSCSSTTEEEEE-EEEEEEETTEEEEEEEEEETTTEEEEEEEEESSSSSEEEEEEE
T ss_pred ecCCCccCccccC-CCcccccCCEEEEEEEeeecCCccEEEEEEcCCccceeEeccc
Confidence 986422111 1 1456777999988763222222346899999999999987654
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=3.5e-05 Score=79.34 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=85.1
Q ss_pred eeeEEECCEEEEEEEeeeccC---C-CceEEEEEEeCCCCCceEe--eeeecCC-----CceeeeEEEEeCCEEEEEe--
Q 045656 191 PFFYLQGNDLYLFYETKNSIT---M-QGDIGVAKSVDKGATWQQL--GIALDED-----WHLSFPYVFDYHGQIYMMP-- 257 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~~---~-~G~I~va~S~D~g~tw~~~--gvvLde~-----~HLSyP~VF~~dG~iYMiP-- 257 (802)
+-++..++++++||+...... . +-.+.++.| +++.+|+.. .+|+..+ .|+-.|+||+.+|++||+=
T Consensus 76 Gsav~~~g~~~~~yT~~~~~~~~~~~~~~~~~a~s-~dg~~w~k~~~npvi~~~~~~~~~~fRDP~V~~~~g~w~M~~g~ 154 (294)
T d1uypa2 76 GSAVEKDGKMFLVYTYYRDPTHNKGEKETQCVVMS-ENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGS 154 (294)
T ss_dssp EEEEEETTEEEEEEEEEECCCSSCCCEEEEEEEEE-SSSSCCEECTTCCSBCSCSSTTEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCeEEEEEEEeeCCCCCCcceeeeEEEEC-CCCCceEeecCCceecCCCccCccccCCCcccccCCEEEEEEEe
Confidence 667789999999999754321 1 223344555 559999865 3566542 4578999999999999993
Q ss_pred -CCCCCCeeEEEEeccCCcCceeeeeccCC----CccCCEEEEECCEEEEEEeCC
Q 045656 258 -ESRAKGEVRLYRAVNFPLEWKLEKIIMKK----PLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 258 -Ess~sg~l~LYra~~FP~~We~~~~Ll~~----~~vDatI~~~dG~wwLF~S~~ 307 (802)
...+.+.+.||++.++ .+|+....+.+. ..+=|-+|+.+++|+|+++..
T Consensus 155 ~~~~~~G~i~ly~S~Dl-~~W~~~g~l~~~~~~~~~ECPdlf~l~~~~vl~~s~~ 208 (294)
T d1uypa2 155 GKDEKIGRVLLYTSDDL-FHWKYEGAIFEDETTKEIECPDLVRIGEKDILIYSIT 208 (294)
T ss_dssp EETTTEEEEEEEEESSS-SSEEEEEEEEEETTCSCEEEEEEEEETTEEEEEEEET
T ss_pred eecCCccEEEEEEcCCc-cceeEeccceeCCCCCceeeceEEEeCCeeEEEEEec
Confidence 2344578999999886 789988776532 367789999999999999864
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=97.56 E-value=0.00014 Score=73.72 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=82.2
Q ss_pred eeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeeeccC---------------CCccCCEEEEECCEEEEEEeCC
Q 045656 243 FPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMK---------------KPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll~---------------~~~vDatI~~~dG~wwLF~S~~ 307 (802)
.|.|++.+|++||+.-. ..+.+|+++++ ..|+.+...++ ..+..|.|+.++|+||||+|..
T Consensus 26 DP~i~~~~g~yY~~~t~---~gi~i~~S~DL-~nW~~~g~~l~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~yyl~~t~~ 101 (312)
T d1wl7a1 26 DPVIAKEGSRWYVFHTG---SGIQIKTSEDG-VHWENMGRVFPSLPDWCKQYVPEKDEDHLWAPDICFYNGIYYLYYSVS 101 (312)
T ss_dssp SCEEEEETTEEEEEESE---ETCEEEEESSS-SEEEEEEESCSSCCTTHHHHCTTCCSCEEEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCEEEEEEec---CCceEEEcCCC-CCceECcccccCCcccccccCCcccCCceEcceEEEeCCEEEEEEEee
Confidence 89999999999998542 36899999987 78998765332 1267789999999999999874
Q ss_pred CCCCCCCCCcEEEEE-----EcCCCCCCeeCCCCCeeeCCCCCCcccC--CccEEE-CCeEEEEcccCCCCCCceEEEEE
Q 045656 308 SGFGTTQNGQLEIWY-----SSSPFGPWKPHKKNPIYNGDKSLGARNG--GRPFVY-DGNLYRVGQDCAESYGRRVRTFK 379 (802)
Q Consensus 308 ~~~g~~~n~~L~i~~-----AdSplGPW~~hp~NPI~~~~~~~~aR~G--G~vF~~-dGkLyRp~QdC~~~YG~~L~l~~ 379 (802)
.. .......++++ +++|.+||++.. |++..... ...++ ..+|.+ ||+.|+..... ...+.+.|
T Consensus 102 ~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~-~~~~~iD~~~f~d~dG~~y~~~~~~----~~~i~~~~ 172 (312)
T d1wl7a1 102 TF--GKNTSVIGLATNRTLDPRDPDYEWKDMG--PVIHSTAS-DNYNAIDPNVVFDQEGQPWLSFGSF----WSGIQLIQ 172 (312)
T ss_dssp CT--TCCCEEEEEEEESCSCTTSTTCCCEEEE--EEEEECTT-SSSCCCSCEEEECTTSCEEEEECBS----TTCEEEEE
T ss_pred cC--CcccceeeEEEEecccCCCCcccccccc--ceecCCCC-CCCCcCCCceeEccCCcEEEeecCC----CCceeEEE
Confidence 21 11122344444 355678887643 44432211 11222 346665 89999977542 34577777
Q ss_pred ec
Q 045656 380 VE 381 (802)
Q Consensus 380 It 381 (802)
++
T Consensus 173 l~ 174 (312)
T d1wl7a1 173 LD 174 (312)
T ss_dssp BC
T ss_pred Ec
Confidence 64
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.00071 Score=70.45 Aligned_cols=114 Identities=18% Similarity=0.315 Sum_probs=81.2
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEE--EeCCEEEEE--eCC--
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVF--DYHGQIYMM--PES-- 259 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF--~~dG~iYMi--PEs-- 259 (802)
.-+.||=++..++++||+|++.. +...|++|.|.| +.+|+..+.+.... -..+.+| +.+|+++|+ |..
T Consensus 103 ~gv~DPrv~~~~d~yym~yt~~~---~~~~i~lA~S~D-~~~w~k~g~~~~~~--~kd~~lfpeki~Gky~ml~Rp~~~~ 176 (327)
T d1vkda_ 103 SYAYDPRVVKIEDTYYITFCTDD---HGPTIGVGMTKD-FKTFVRLPNAYVPF--NRNGVLFPRKINGKYVMLNRPSDNG 176 (327)
T ss_dssp SSEEEEEEEEETTEEEEEEEEES---SSEEEEEEEESS-SSSEEEECCSSSSS--EEEEEECSSCBTTBEEEEEEECCSS
T ss_pred CcEEcceEEEECCEEEEEEEecC---CCcEEEEEEecC-cchheecCCccCcc--ccCceEeeeeccCeEEEEEeeccCC
Confidence 35789999999999999999853 345799999877 89999988755432 2344555 458999998 432
Q ss_pred -CCCCeeEEEEeccCCcCceeeeecc-CC-------Cc--cCCEEEEECCEEEEEEeC
Q 045656 260 -RAKGEVRLYRAVNFPLEWKLEKIIM-KK-------PL--VDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 260 -s~sg~l~LYra~~FP~~We~~~~Ll-~~-------~~--vDatI~~~dG~wwLF~S~ 306 (802)
...+.|.|.+..+. ..|+.+..++ .. .. ..|.+++.+..|+|||..
T Consensus 177 ~~~~~~I~la~S~Dl-~~W~~~~~v~~~~~~~~wd~~~vG~gpppI~t~~Gwl~iYHg 233 (327)
T d1vkda_ 177 HTPFGDIFLSESPDM-IHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHG 233 (327)
T ss_dssp SCSCCCEEEEEESSS-SCBEEEEEEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEE
T ss_pred CcccceEEEEcCCCc-ccccccceecccCCCCceeeeeecCCCCcEEccCcEEEEEEe
Confidence 22355777777664 5798766432 21 12 257788898889999954
|
| >d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: alpha-L-arabinanase species: Cellvibrio cellulosa [TaxId: 155077]
Probab=97.43 E-value=0.0005 Score=68.92 Aligned_cols=127 Identities=13% Similarity=0.217 Sum_probs=79.6
Q ss_pred eeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeeeccC--------------CCccCCEEEEECCEEEEEEeCCC
Q 045656 243 FPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMK--------------KPLVDPFMINHDGQYWLFGSDHS 308 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll~--------------~~~vDatI~~~dG~wwLF~S~~~ 308 (802)
.|+|++++|++||+.-. ..+.+|+++++ ..|+.+...+. ..+..|.|++++|+||||++...
T Consensus 9 DP~v~~~~g~yYl~~t~---~gi~~~~S~DL-vnW~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~~~~~y~~~~ 84 (318)
T d1gyha_ 9 DPVMTREGDTWYLFSTG---PGITIYSSKDR-VNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGLFYLYYSVSA 84 (318)
T ss_dssp SCEEEEETTEEEEEESE---ETCEEEEESSS-SEEEEEEESSSSCCTTHHHHCTTCCSEEEEEEEEEETTEEEEEEEECC
T ss_pred CCEEEEECCEEEEEEee---CCEEEEECCCC-CCCeECCccccCCccccccCCCcCCCceECCEEEEEcCceEEEEEEec
Confidence 79999999999999643 45889999887 57987654332 12567899999999999998642
Q ss_pred CCCCCCCCcEEEEEEcC--C---CCCCeeCCCCCeeeCCCCCCcccC--CccEEE-CCeEEEEcccCCCCCCceEEEEEe
Q 045656 309 GFGTTQNGQLEIWYSSS--P---FGPWKPHKKNPIYNGDKSLGARNG--GRPFVY-DGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdS--p---lGPW~~hp~NPI~~~~~~~~aR~G--G~vF~~-dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
........+++++.+ + .++|++.+ ++....+.....++ +.+|++ ||+.|+..-.+ ..++.+.+.
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iDp~v~~d~dG~~Yl~~~~~----~~~~~~~~~ 156 (318)
T d1gyha_ 85 --FGKNTSAIGVTVNKTLNPASPDYRWEDKG--IVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSF----WGGLKLFKL 156 (318)
T ss_dssp --TTSCCEEEEEEEESCSCTTSTTCCCEEEE--EEEEECTTTCSSCCCCCEEEECTTSCEEEEECBS----TTCEEEEEB
T ss_pred --CCCcccceeEEEEeccCCCccccccccCc--eecccCCCCCCCceEccceEeecCCcEEEeccCC----CCCeeeEec
Confidence 111233556666653 3 45666543 22222111111111 456766 79999877433 345666555
Q ss_pred c
Q 045656 381 E 381 (802)
Q Consensus 381 t 381 (802)
.
T Consensus 157 ~ 157 (318)
T d1gyha_ 157 N 157 (318)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Probab=97.30 E-value=0.0012 Score=71.51 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=100.1
Q ss_pred ECCEEEEEEEeeecc-CCCceEEEEEEeC---CCCCceEeeeeecCC-------------CceeeeE-EEEeCCEEEEEe
Q 045656 196 QGNDLYLFYETKNSI-TMQGDIGVAKSVD---KGATWQQLGIALDED-------------WHLSFPY-VFDYHGQIYMMP 257 (802)
Q Consensus 196 ~~g~~ylF~E~~~~~-~~~G~I~va~S~D---~g~tw~~~gvvLde~-------------~HLSyP~-VF~~dG~iYMiP 257 (802)
.+|-.++|+-.=+.. ....+|.++-+.. +...|++.|.|+.+. .+.|-.- |...||+++|+-
T Consensus 67 ~~G~~~~f~L~a~~~~~~d~~i~~~y~~~~s~dl~~W~~~G~vf~d~~~~~~~~~~~~~~~~eWSGSAv~~~DG~~~LfY 146 (440)
T d1oyga_ 67 YHGYHIVFALAGDPKNADDTSIYMFYQKVGETSIDSWKNAGRVFKDSDKFDANDSILKDQTQEWSGSATFTSDGKIRLFY 146 (440)
T ss_dssp BTTEEEEEEEEECTTCTTCCEEEEEEEETTCCSGGGCEEEEESCCTTHHHHTTCTTGGGCCEEEEEEEEECTTSCEEEEE
T ss_pred ECCEEEEEEEeCCCCCCCCCeEEEEEeecCCCccCCCEECccccCCCccccccccccCCCCccCccceEEccCCeEEEEE
Confidence 466666776543332 2456777766543 235799999999653 3456654 567899999994
Q ss_pred CC---CCCCeeEEEEec-----c-C---CcCceeeeeccCC-----------------------CccCCEEEEECCEEEE
Q 045656 258 ES---RAKGEVRLYRAV-----N-F---PLEWKLEKIIMKK-----------------------PLVDPFMINHDGQYWL 302 (802)
Q Consensus 258 Es---s~sg~l~LYra~-----~-F---P~~We~~~~Ll~~-----------------------~~vDatI~~~dG~wwL 302 (802)
-. ...+..+|-.++ + . ..+|+..+.|++. .+-||.+++++|+|||
T Consensus 147 Tg~~~~~~~~q~i~~a~~~~~~d~~~~~~~~~~~~~~l~~pDG~~Yqt~~q~~~~~~~~~~d~~~fRDP~v~~~~g~~y~ 226 (440)
T d1oyga_ 147 TDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVEDKGHKYL 226 (440)
T ss_dssp EEEEGGGTTEEEEEEEEEEEEECSSCEEEEEEEEEEEEECCCSSSBCCHHHHHHHTGGGGTCCCCCEEEEEEEETTEEEE
T ss_pred EeccCCCCCcceEEEEEEEEeecCCcceeecccCCceeecCCCccceeeecccccCCCCCCCcccccCCceeeeCCeEEE
Confidence 21 111223332221 1 1 1124444444321 3679999999999999
Q ss_pred EEeCCCCC--CCC------------------------------------CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC
Q 045656 303 FGSDHSGF--GTT------------------------------------QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS 344 (802)
Q Consensus 303 F~S~~~~~--g~~------------------------------------~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~ 344 (802)
+...+... |.. .+..+.+++.+.-+..|+.++ |++.....
T Consensus 227 ~fegn~~~~~G~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~ng~I~l~~~s~D~~~We~~~--pLl~a~~v 304 (440)
T d1oyga_ 227 VFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKVMK--PLIASNTV 304 (440)
T ss_dssp EEEEEBCTTSCCSSGGGGGBGGGTCSCHHHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECTTSSEEEEEE--EEEECTTT
T ss_pred EEeccccccccccccchhccccccccccccccccccccccccccccceeccceEEEEEeCCCcccceecC--cceeccCC
Confidence 98542111 100 133567777555567799876 88776433
Q ss_pred CCcccCCccEEECCeEEEEc
Q 045656 345 LGARNGGRPFVYDGNLYRVG 364 (802)
Q Consensus 345 ~~aR~GG~vF~~dGkLyRp~ 364 (802)
...-.+..+|..|||+|+++
T Consensus 305 ~d~~ErP~I~~~nGKYYLFt 324 (440)
T d1oyga_ 305 TDEIERANVFKMNGKWYLFT 324 (440)
T ss_dssp CSCCEEEEEEEETTEEEEEE
T ss_pred CCeEECCEEEEECCEEEEEE
Confidence 33345678899999999975
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=96.38 E-value=0.059 Score=55.73 Aligned_cols=143 Identities=21% Similarity=0.354 Sum_probs=84.7
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCCCce--EEEEEEeCCCCCceEeeeeecCC------Cceeee-EEEEe----
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITMQGD--IGVAKSVDKGATWQQLGIALDED------WHLSFP-YVFDY---- 249 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~~G~--I~va~S~D~g~tw~~~gvvLde~------~HLSyP-~VF~~---- 249 (802)
+..|+-||=.+ ..+|+|||||--.......|. -++++|.| +.+|++++++|..+ .+-.|- .++..
T Consensus 16 ~~gwlNDPnGl~y~~G~yHlFyQ~nP~~~~~g~~~WgHa~S~D-Lv~W~~~p~al~p~~~~~d~~~~~~SGsav~~~~~~ 94 (353)
T d1y4wa2 16 QKNWMNDPNGLLYHNGTYHLFFQYNPGGIEWGNISWGHAISED-LTHWEEKPVALLARGFGSDVTEMYFSGSAVADVNNT 94 (353)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEECTTCSSSCSCEEEEEEESS-SSSCEEEEEEECCBTTTSCCCBEEEEEEEEECTTCT
T ss_pred CCCCcCCCccceEECCEEEEEEecCCCCCCCCCeEEEEEEecc-ccceeECCccccCCccCcCCCCccccCceEecCCCc
Confidence 45799999954 889999999975444444444 57999888 99999999998432 121222 22332
Q ss_pred -----CC--EEEEE-----eCC----------CCCCeeEEEEeccCCcCcee-ee--eccCC----------CccCCEEE
Q 045656 250 -----HG--QIYMM-----PES----------RAKGEVRLYRAVNFPLEWKL-EK--IIMKK----------PLVDPFMI 294 (802)
Q Consensus 250 -----dG--~iYMi-----PEs----------s~sg~l~LYra~~FP~~We~-~~--~Ll~~----------~~vDatI~ 294 (802)
+| .++++ +.. .....++|-...+-...|+. ++ .++.. ..=||.++
T Consensus 95 ~~~~~~g~~~l~~~YT~~~~~~~~~~~~~~~~~~~~~q~~A~s~d~g~~~~~~~~~npvi~~~~~~~~~~~~~fRDP~V~ 174 (353)
T d1y4wa2 95 SGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVF 174 (353)
T ss_dssp TSCCCSSSCCEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEE
T ss_pred cccccCCCceEEEEEeeeecccccccCcccccCCcEEEEEEEECCCCcceEEecCCCeEecCCCCCCcccccccCCCceE
Confidence 12 34444 110 11123455555554445543 21 13321 35799999
Q ss_pred EE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 295 NH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 295 ~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
++ ++.|||+.... ...+.+.+|.|+++ -.|+-.
T Consensus 175 ~~~~~~~~~~~~~~-----~~~g~v~ly~S~Dl-~~W~~~ 208 (353)
T d1y4wa2 175 WHDESQKWVVVTSI-----AELHKLAIYTSDNL-KDWKLV 208 (353)
T ss_dssp EETTTTEEEEEEEE-----GGGTEEEEEEESSS-SSCEEE
T ss_pred EECCCCEEEEEEee-----cCCCeEEEEecCCC-CceEEe
Confidence 88 44566665432 12457889999875 479754
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=95.15 E-value=0.076 Score=54.87 Aligned_cols=108 Identities=17% Similarity=0.264 Sum_probs=72.1
Q ss_pred CEEEEEEEeeeccC-----------CCceEEEEEEeCCCCCceEe---eeeecCC--------CceeeeEEEEeCCE-EE
Q 045656 198 NDLYLFYETKNSIT-----------MQGDIGVAKSVDKGATWQQL---GIALDED--------WHLSFPYVFDYHGQ-IY 254 (802)
Q Consensus 198 g~~ylF~E~~~~~~-----------~~G~I~va~S~D~g~tw~~~---gvvLde~--------~HLSyP~VF~~dG~-iY 254 (802)
.++++||+...... ..-...+|.|.|++.+|+.. .+||..+ .|.-.|+||.+++. +|
T Consensus 103 ~~l~~~YT~~~~~~~~~~~~~~~~~~~~~q~~A~s~d~g~~~~~~~~~npvi~~~~~~~~~~~~~fRDP~V~~~~~~~~~ 182 (353)
T d1y4wa2 103 TPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKW 182 (353)
T ss_dssp CCEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEETTTTEE
T ss_pred ceEEEEEeeeecccccccCcccccCCcEEEEEEEECCCCcceEEecCCCeEecCCCCCCcccccccCCCceEEECCCCEE
Confidence 36788998764321 12245678888889888754 3566432 47899999988654 44
Q ss_pred EE-eCCCCCCeeEEEEeccCCcCceeeeeccCC-----CccCCEEEEE------CCEEEEEEeC
Q 045656 255 MM-PESRAKGEVRLYRAVNFPLEWKLEKIIMKK-----PLVDPFMINH------DGQYWLFGSD 306 (802)
Q Consensus 255 Mi-PEss~sg~l~LYra~~FP~~We~~~~Ll~~-----~~vDatI~~~------dG~wwLF~S~ 306 (802)
|| --..+.+.+.||++.++ .+|+....+... ..+=|-+|+. +.+|.|+.+.
T Consensus 183 ~~~~~~~~~g~v~ly~S~Dl-~~W~~~g~l~~~~~~g~~wECPdlf~l~~~~~~~~~~vl~~g~ 245 (353)
T d1y4wa2 183 VVVTSIAELHKLAIYTSDNL-KDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSGL 245 (353)
T ss_dssp EEEEEEGGGTEEEEEEESSS-SSCEEEEEECCCSCCSSEEEEEEEEEEEBTTSSCEEEEEEEEE
T ss_pred EEEEeecCCCeEEEEecCCC-CceEEeccccccCCCCcceeeeEEEEeecCCCCceEEEEEecc
Confidence 44 22233578999999886 899988775432 3677788887 5567777753
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=92.63 E-value=0.059 Score=51.44 Aligned_cols=111 Identities=9% Similarity=0.099 Sum_probs=74.4
Q ss_pred ceEEEEEecccChhhHHHHHHHhcC--CCCcceEEEEeCCCCCCCC---CCCCCCCcEEEEEcCCcCccc----------
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSR--CSSVKEIVVVWNKGEPPKL---SDLDSAVPVRIRVEKQNSLNN---------- 619 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~--~p~v~kIvVVWn~~~pP~~---~~~~s~vPVrv~~~~~NSLNN---------- 619 (802)
..||+|-||+ +...|++.|+.+.+ .+. -||+||.++...... ..+...-+|++...+.+....
T Consensus 2 ~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~-~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a 79 (255)
T d1qg8a_ 2 KVSVIMTSYN-KSDYVAKSISSILSQTFSD-FELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL 79 (255)
T ss_dssp CEEEEEEESS-CTTTHHHHHHHHHTCSCCC-EEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred EEEEEEecCC-CHHHHHHHHHHHHhCCCCC-eEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccc
Confidence 5799999998 56778888888743 343 489999886532211 123234568887655332211
Q ss_pred cCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC-ceeeccccc
Q 045656 620 RFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD-RIVGFYPRL 667 (802)
Q Consensus 620 RF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd-RLVGF~~R~ 667 (802)
|=+-....++|-|+.+|+|..+.++.|+...+..+++|+ .+|+-..+.
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~ 128 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKT 128 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEeeccee
Confidence 111224557899999999999999999999999999986 465544443
|
| >d2b4wa1 b.67.2.5 (A:2-311) Hypothetical protein LmjF10.1260 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: LmjF10.1260-like domain: Hypothetical protein LmjF10.1260 species: Leishmania major [TaxId: 5664]
Probab=92.54 E-value=0.47 Score=48.53 Aligned_cols=133 Identities=8% Similarity=0.118 Sum_probs=77.4
Q ss_pred eCeee-EEECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCC--CCCC
Q 045656 189 ADPFF-YLQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPES--RAKG 263 (802)
Q Consensus 189 ADPFl-l~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEs--s~sg 263 (802)
-.|-. +..+|++||++-.= .+.. .-.|..+++.+ +..|+... +.-|.+=.|+|-+.+|+++|--+. ....
T Consensus 30 yN~~apf~~~Gk~~l~~RvE-~rd~~s~s~v~lf~~~g-~~~f~~~~---~p~~glEDPrvt~i~g~lv~~~t~~~~~~~ 104 (310)
T d2b4wa1 30 YNCSVPFSYKGKTHIYGRVE-KRDIWAASHVRLFEETG-KDEFTAVP---ELSWELEDPYIAKINNEMIFGGTRVRKNGN 104 (310)
T ss_dssp ESCCCCEEETTEEEEEEEEE-CTTCSSCCEEEEEEEEE-TTEEEECT---TCCBSCEEEEEEEETTEEEEEEEEEC----
T ss_pred ecCCcEEEECCEEEEEEEEE-ccCcceEEEEEEEEecC-CcceEECC---cccccCCCCCEEeECCEEEEEEEEecCCCC
Confidence 34433 57899999988642 2223 34555445443 45554321 224778899999999999998431 2224
Q ss_pred eeEEEEeccCCcCceeeee-ccC--CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCee
Q 045656 264 EVRLYRAVNFPLEWKLEKI-IMK--KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKP 332 (802)
Q Consensus 264 ~l~LYra~~FP~~We~~~~-Ll~--~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~ 332 (802)
.+.+|++..+ ..|+..-. +.. ...-|..+++. ||+|+||+-.. ......++.++++++. .|++
T Consensus 105 ~~~~~~t~~~-r~~~~~l~~f~~gp~~~Kdi~L~e~~dGKy~~ftRP~----~g~~g~Ig~~~~d~l~-~~t~ 171 (310)
T d2b4wa1 105 AILSYYGYFY-RGTPDELTYFTRGPGCMKDIRVLQLQDGRLGVFSRPR----VGRKASIGFVILNSID-ELGA 171 (310)
T ss_dssp -CCCEEEEEE-EEETTEEEEEEECCTTCCCCEEEECTTSCEEEEECCC----C---CCEEEEEESCGG-GCSH
T ss_pred cceEEEeeee-ecchhcCceeecCCCccccEEeEEeeCCEEEEEEccc----cCCCCeeEEEEeCChh-hCCH
Confidence 4556666543 33442222 222 33578888887 99999998542 1123478888888875 4654
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.77 E-value=0.077 Score=52.91 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=73.7
Q ss_pred CceEEEEEecccChhhHHHHHHHhc-CC-CC-cceEEEEeCCCCCCCCC----CC--CCCCcEEEEEcCCcC-c-cccCc
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYS-RC-SS-VKEIVVVWNKGEPPKLS----DL--DSAVPVRIRVEKQNS-L-NNRFK 622 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya-~~-p~-v~kIvVVWn~~~pP~~~----~~--~s~vPVrv~~~~~NS-L-NNRF~ 622 (802)
-..+|||-+|+.....|.+.|+.+. +. |. +.|||||=++...+... .. ....+|+|+..+.|. + ..|=.
T Consensus 22 P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~ 101 (328)
T d1xhba2 22 PTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLK 101 (328)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHH
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHH
Confidence 3589999999843456777787763 33 33 36898884433222211 11 234679998877763 2 22222
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
=....++|-|+.+|+|+.+.++-|+-..+.-++++.-+|+
T Consensus 102 Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~ 141 (328)
T d1xhba2 102 GAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVC 141 (328)
T ss_dssp HHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred HHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEe
Confidence 2345689999999999999999999988888888877664
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=90.62 E-value=7.1 Score=38.71 Aligned_cols=84 Identities=17% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEE-CCEEEEEEEeeecc-C--CCceEEEEEEeCCCCCceEeeeeecCCC-----
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQ-GNDLYLFYETKNSI-T--MQGDIGVAKSVDKGATWQQLGIALDEDW----- 239 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~-~g~~ylF~E~~~~~-~--~~G~I~va~S~D~g~tw~~~gvvLde~~----- 239 (802)
...|+.+.+-.- ..+|.=|-|++. +|++.+|+|.+... . ...+|.+.+|.|.|+||+...++.+.+.
T Consensus 18 ~~~~~~~g~~g~----~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~~~i~~~~~~~~~~ 93 (379)
T d3sila_ 18 GNTIVGSGSGGT----TKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLS 93 (379)
T ss_dssp SCBCCCSBGGGB----CCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEEECCCCSCTTTC
T ss_pred CcEEEecCCCCc----eeeEeccEEEEECCCcEEEEEeeEECCCCCCCCceEEEEEecCCccCCCCCEEccCCCCCcccc
Confidence 345555444322 134555999955 88999999986543 2 2345667789999999998776555432
Q ss_pred ceeeeEEE--EeCCEEEEE
Q 045656 240 HLSFPYVF--DYHGQIYMM 256 (802)
Q Consensus 240 HLSyP~VF--~~dG~iYMi 256 (802)
+...|.++ ..+|.++++
T Consensus 94 ~~~~p~~v~~~~~g~~~~~ 112 (379)
T d3sila_ 94 RVMDPTCIVANIQGRETIL 112 (379)
T ss_dssp EEEEEEEEEEEETTEEEEE
T ss_pred ccCCccEEEECCCCCEEEE
Confidence 24456543 346665443
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=88.47 E-value=1.7 Score=41.56 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCeeccccccCCCC-CCceeeCeeeEEE-CCEEEEEEEeeecc---CCCceEEEEEEeCCCCCceEeeeeecCC-----C
Q 045656 170 NPIMTCASVSSAGF-PSNFVADPFFYLQ-GNDLYLFYETKNSI---TMQGDIGVAKSVDKGATWQQLGIALDED-----W 239 (802)
Q Consensus 170 NPVlt~~~v~d~~~-~~~F~ADPFll~~-~g~~ylF~E~~~~~---~~~G~I~va~S~D~g~tw~~~gvvLde~-----~ 239 (802)
.|++|..++...+. ....|-=|-|++. +|++.+++|++... .....|.+.+|+|.|.||+...++.+.+ .
T Consensus 2 ~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~~ 81 (356)
T d1w8oa3 2 EPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIK 81 (356)
T ss_dssp CCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCB
T ss_pred CCccceeeccccCcCCcEeeEeCEEEEECCCCEEEEEeeeeCCCCCCCCceEEEEEccCCCCCCCCCEEeecCCCCCccc
Confidence 47777777777542 1122233888865 79999999986442 2356788999999999999877655442 2
Q ss_pred ceeeeEE-EE-eCCEEEEEe---C--------------CCCCCeeEEEEeccCCcCceeeee
Q 045656 240 HLSFPYV-FD-YHGQIYMMP---E--------------SRAKGEVRLYRAVNFPLEWKLEKI 282 (802)
Q Consensus 240 HLSyP~V-F~-~dG~iYMiP---E--------------ss~sg~l~LYra~~FP~~We~~~~ 282 (802)
+...|.+ +. .+|.+|++- . .....++.+++..+--..|.....
T Consensus 82 ~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~ 143 (356)
T d1w8oa3 82 GFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTI 143 (356)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEEC
T ss_pred ccccceEEEeCCCCeEEEEEeeeccCCcccccccCCCCCCcEEEEEEEecCCcccccccccc
Confidence 3455654 43 367877761 1 112245788888887778886544
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=87.37 E-value=7.2 Score=39.93 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=88.9
Q ss_pred EEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeee-e--cc-------CCC
Q 045656 218 VAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEK-I--IM-------KKP 287 (802)
Q Consensus 218 va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~-~--Ll-------~~~ 287 (802)
++-|+|+|.+|+..+.+ . +....-|-|.+.||+++|.--+. .+...+|+..+.=..|.... + ++ ..+
T Consensus 207 ~iySdD~G~TW~~g~~~-~-~~~~~~~~v~~~dG~lll~~R~~-~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~ 283 (399)
T d2ah2a2 207 IFYSEDEGKTWKFGKGR-S-AFGCSEPVALEWEGKLIINTRVD-YRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQP 283 (399)
T ss_dssp EEEESSTTSSCEECSCC-C-CTTCEEEEEEEETTEEEEEEECT-TSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSC
T ss_pred EEEeCCCCceeEecccc-C-CCCccccceeccCCeEEEEEecC-CCceeEEEEcCCCccccccccccccccCCCcccCCC
Confidence 44588999999975432 2 23345577888899999996543 34556788888888896432 1 11 123
Q ss_pred ccCCEEE--EECCEEEEEEeCCCCCCCC-CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccC-CccEEECCeEEEE
Q 045656 288 LVDPFMI--NHDGQYWLFGSDHSGFGTT-QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNG-GRPFVYDGNLYRV 363 (802)
Q Consensus 288 ~vDatI~--~~dG~wwLF~S~~~~~g~~-~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~G-G~vF~~dGkLyRp 363 (802)
.+.++++ .++|+-+|++|........ ....+.++.+++----|.. |+..+. ...| ..+...||.|+..
T Consensus 284 ~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~~Sdd~g~~w~~----~~~i~~----g~saYS~L~~~dg~ig~l 355 (399)
T d2ah2a2 284 GSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVG----QVSIGD----ENSAYSSVLYKDDKLYCL 355 (399)
T ss_dssp CCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEEEESSSCEEEEE----ECSCTT----CBCCCEEEEEETTEEEEE
T ss_pred cccceeeEeccCCCeEEEEECCCCccccccccceEEEEeCCCCccccC----ceEecC----CCccccEeEeECCEEEEE
Confidence 4444443 4689888888764322222 2236899998765334542 222221 1112 3344459999887
Q ss_pred cccCCCCCCceEEEEEec
Q 045656 364 GQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 364 ~QdC~~~YG~~L~l~~It 381 (802)
.-. ...-..+|.+.++|
T Consensus 356 YE~-~~~~~~~i~f~rlT 372 (399)
T d2ah2a2 356 HEI-NSNEVYSLVFARLV 372 (399)
T ss_dssp EEE-EETTEEEEEEEECH
T ss_pred EEc-CCCCeeeEEEehHH
Confidence 743 22222368888875
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=86.59 E-value=1.5 Score=45.30 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEeeeeecCC-C---ceeeeEEEEeCCEEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLGIALDED-W---HLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~gvvLde~-~---HLSyP~VF~~dG~iYMi 256 (802)
|-- |-++..+|.+..|+|.+.... ..-+|.+-.|.|+|++|....++.+.. . .+..|-++.+.+++||+
T Consensus 34 yRI-PsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~~~v~~~~~~~~~~~~dP~~v~d~~~i~ll 109 (399)
T d2ah2a2 34 FRL-PALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIVKGNKLYVL 109 (399)
T ss_dssp EEE-EEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEEEEECCCCSSTTCEEEEEEEEEETTEEEEE
T ss_pred Eec-eEEEEECCEEEEEEeEEECCCCCCcceEEEEEeecCCCcCCCceEEEecCCCCCcccccCCeEEEeCCeEEEE
Confidence 444 889988999999999974432 234455568999999999887666543 2 36689989999999887
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=84.68 E-value=4.6 Score=39.21 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=76.8
Q ss_pred eeeEEE---CCEEEEEEEeeeccCC------CceEEEEEEeCCCCCceEeeeeec-----CCCceeeeEEEEe--CCEEE
Q 045656 191 PFFYLQ---GNDLYLFYETKNSITM------QGDIGVAKSVDKGATWQQLGIALD-----EDWHLSFPYVFDY--HGQIY 254 (802)
Q Consensus 191 PFll~~---~g~~ylF~E~~~~~~~------~G~I~va~S~D~g~tw~~~gvvLd-----e~~HLSyP~VF~~--dG~iY 254 (802)
|=|++. +|.++.|+|.+..... ...|.+.+|+|.|+||+....+.+ ...+...|.++.. ++.++
T Consensus 10 psl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~~d~~~~~i~ 89 (364)
T d1w0pa3 10 PSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPIYDPSSNTVL 89 (364)
T ss_dssp EEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEEEETTTTEEE
T ss_pred eEEEEEcCCCCEEEEEEeeeeCCCCCcccCCcceEEEEEeCCCCcCCCCCEEeecCCCCCCcccccCCeEEEECCCCeEE
Confidence 555543 6799999998755422 245889999999999998665443 2456788987654 45666
Q ss_pred EE----eCC----------CCCCeeEEEEeccCCcCceeeeeccC------CCccCCEEEEECCEEEEEEeCCCCCCCCC
Q 045656 255 MM----PES----------RAKGEVRLYRAVNFPLEWKLEKIIMK------KPLVDPFMINHDGQYWLFGSDHSGFGTTQ 314 (802)
Q Consensus 255 Mi----PEs----------s~sg~l~LYra~~FP~~We~~~~Ll~------~~~vDatI~~~dG~wwLF~S~~~~~g~~~ 314 (802)
++ ++. .....+..-+..+-=..|.....+.. ....+..+..++|++++-..... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~~ 165 (364)
T d1w0pa3 90 VSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLD----RF 165 (364)
T ss_dssp EEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEEEES----SS
T ss_pred EEEEecCCCCCcccccccccccCcEEEEecCCCCCcccccccccccceeeeecCCCccccccCCeEEEEEEeec----CC
Confidence 65 111 12233333233332234543322111 11222233345787765443321 12
Q ss_pred CCcEEEEEEcCCCCCCeeCC
Q 045656 315 NGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 315 n~~L~i~~AdSplGPW~~hp 334 (802)
.....++++++.-..|+...
T Consensus 166 ~~~~~~~~s~d~g~tw~~~~ 185 (364)
T d1w0pa3 166 FLNVMSIYSDDGGSNWQTGS 185 (364)
T ss_dssp CEEEEEEEESSSSSSCEECC
T ss_pred CCceeEEEeccCCcEEEecc
Confidence 23455666676666787654
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=83.83 E-value=0.4 Score=46.38 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=48.2
Q ss_pred EEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEE-eCCEEEEEeCCCCCCeeEEEEeccCCcCc
Q 045656 201 YLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFD-YHGQIYMMPESRAKGEVRLYRAVNFPLEW 277 (802)
Q Consensus 201 ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~-~dG~iYMiPEss~sg~l~LYra~~FP~~W 277 (802)
.|++..-+....+..+.+..|.|+|.+|.+..+ |++ -...||.+.. .||++|++-|.. ..+...+ ||..|
T Consensus 284 ~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~-i~~-~~~~Ys~~~~~~dg~i~~~ye~g--~~~~~~~---~~l~~ 354 (356)
T d1w8oa3 284 VLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKV-FQP-GSMSYSTLTALPDGTYGLLYEPG--TGIRYAN---FNLAW 354 (356)
T ss_dssp CEEEEEECCSSSSEEEEEEEESSTTSCCCEEEE-EEE-EECCCEEEEECTTSCEEEEECCS--SEEEEEE---ECHHH
T ss_pred EEEEECCCCCCCCcceEEEEEeCCCeecCCccE-eCC-CCCcCceeEEcCCCEEEEEEECC--CCcEEEE---eeHHH
Confidence 455554444455678888999999999998654 443 4678999865 468899998864 3444433 67666
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=83.66 E-value=8.7 Score=39.53 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=76.0
Q ss_pred ceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEeccCCcCceeeee---cc-CCCc
Q 045656 214 GDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI---IM-KKPL 288 (802)
Q Consensus 214 G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~---Ll-~~~~ 288 (802)
....+.-|+|.|.+|+..........+..-|.|.+. +|.+||.-.+. .+...+|+..+.=..|+.... +. ..+.
T Consensus 290 ~~~~~~~SdD~G~tW~~~~~~~~~~~~~~e~~~~e~~~g~l~~~~R~~-~~~~~~~~S~DgG~tW~~~~~~~~~~~~~~~ 368 (483)
T d2slia2 290 AELGFMYSDDHGDNWTYVEADNLTGGATAEAQIVEMPDGSLKTYLRTG-SNCIAEVTSIDGGETWSDRVPLQGISTTSYG 368 (483)
T ss_dssp CSEEEEEESSTTSSCEEEECCCCCSCCCCCEEEEECTTSCEEEEECCS-SSSCEEEEESSTTSSCCCCEECTTCCCCSSC
T ss_pred ceeEEEEecCCcceeEeccccCCCCCCceEEEEEEccCceEEEEeccC-CCcEEEEEEcCCCcccCcCcccccccCCCCC
Confidence 345667789999999986655555566667788776 67899987654 345678888898888975432 21 2345
Q ss_pred cCCEEEEE----CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCee
Q 045656 289 VDPFMINH----DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKP 332 (802)
Q Consensus 289 vDatI~~~----dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~ 332 (802)
.-++++.+ +|+-.|++|..+....+++..|.+++|.+--..|..
T Consensus 369 ~~~s~~~~~~~~~g~~~l~~s~p~~~~~r~~~~l~~~~S~D~G~tw~~ 416 (483)
T d2slia2 369 TQLSVINYSQPIDGKPAIILSSPNATNGRKNGKIWIGLVNDTGNTGID 416 (483)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEECCSSSSBCEEEEEEEEEECSCCGGG
T ss_pred cceeeEEcccCCCCCeEEEEeCCCCCCCcccceEEEEEEcCCCcCCCC
Confidence 56677765 677666665422222233445677677655446763
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