Citrus Sinensis ID: 045661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDRNSEYYFEDRRSPRYYIEERRSPGYNQENPRFGGHSRKTPACFEIVDDRFRDDVSASRRRSDSISFTNTEHKSRSMSPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGKCSKASDGKDADDSANNQKIAPSGSQQCDDGNPVEQKKSHSESLENSSTDPEPTDTAVAAQQTQPITPSDGDNEPSTEQPVEEKAPVAPPPNTLEFLLFELGASFMQSTDETPPNVSGSNTLAAAASSSNTQPMGGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGTSPAITSGQMSASPSSFAASTNASTTNLSEQPSGDNVPQSSASPAPSSGQMTALPNSVGDSTTESTAIVPVSFSDEGPPQDKPVVNVDSTVKFPDVQQLNGLQQHQTLESSTAVAKRSGSAQQTTTPIGHTNNQPWASLLVPNNQGPCSASAEQSSLALSKPAQDTSSSVGSRSLAVEPKVTGRKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKSTNPFDISSDTTPLQAPP
cccHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEccccHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEEcccHHHHHccEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mgnkikedERIEGIIRGLlklpenrrcincnclgpqyvcTTFLTFVctncsgvhreFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLkdwdpqrnsypdgrirDFIKHVYVdrryagekTDKFLRLRlgekedscqsnkvgayigefrsprsesryeqsssgrsqhrersndrnseyyfedrrspryyieerrspgynqenprfgghsrktpacfeivddrfrddvsasrrrsdsisftntehksrsmspeyqkntnnsrtlvvrpikeilgenapslevgkcskasdgkdaddsannqkiapsgsqqcddgnpveqkkshseslensstdpeptdtavaaqqtqpitpsdgdnepsteqpveekapvapppntLEFLLFELGasfmqstdetppnvsgsntlaaaasssntqpmggnmpeasvsppasvefpscaeapvtastinnsaqqsgvsishggtspaitsgqmsaspssfaastnasttnlseqpsgdnvpqssaspapssgqmtalpnsvgdsttestaivpvsfsdegppqdkpvvnvdstvkfpdvqqlnglqqhqtlESSTAVakrsgsaqqtttpightnnqpwasllvpnnqgpcsasaeqsslalskpaqdtsssvgsrslavepkvtgrkelpadlftasympphapiphwqtghaygtgfntqyyptamvsqlapaysnpakstnpfdissdttplqapp
mgnkikederiegIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQiylkdwdpqrnsypdgriRDFIKhvyvdrryagektDKFLRLrlgekedscqsnkvgayigefrsprsesryeqsssgrsqhrersndrnseyyfedrrspryyieerrspgynqenprfgghsrktpacfeiVDDRfrddvsasrrrsdsisftntehksrsmspeyqkntnnsrtlVVRPIKEIlgenapslevgKCSKASDGKDADDSANNQKiapsgsqqcddgnPVEQKKSHSeslensstdpePTDTAVAAQQTQPITPSDGDNEPSTEQPveekapvappPNTLEFLLFELGASFMQSTDETPPNVSGSNTLAAAASSSNTQPMGGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGTSPAITSGQMSASPSSFAASTNASTTNLSEQPSGDNVPQSSASPAPSSGQMTALPNSVGDSTTESTAIVPvsfsdegppqdKPVVNVDSTVKFPDVQQLNGLQQHQTLESSTAVAKRSGSAQQTTTPIGHTNNQPWASLLVPNNQGPCSASAEQSSLALSKpaqdtsssvgsrslavepkvtgrKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKStnpfdissdttplqapp
MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDRNSEYYFEDRRSPRYYIEERRSPGYNQENPRFGGHSRKTPACFEIVddrfrddvsasrrrsdsisFTNTEHKSRSMSPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGkcskasdgkdaddsaNNQKIAPSGSQQCDDGNPVEQKKSHSESLENSSTDPEPTDTAVAAQQTQPITPSDGDNEPSTEQpveekapvapppNTLEFLLFELGASFMQSTDETPPNVSGSNTLaaaasssNTQPMGGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGTSPAITSGQMsaspssfaastnasttnlsEQPSGDNVPQssaspapssGQMTALPNSVGDSTTESTAIVPVSFSDEGPPQDKPVVNVDSTVKFPDVQQLNGLQQHQTLESSTAVAKRSGSAQQTTTPIGHTNNQPWASLLVPNNQGPCsasaeqsslalsKPAQDTSSSVGSRSLAVEPKVTGRKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKSTNPFDISSDTTPLQAPP
**********IEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLG*************Y**********************************************************************CFEIV************************************************************************************************************************************************************LEFLLFELGA*************************************************************************************************************************************************************************************************************************************************************************DLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQL***************************
****************GLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYA************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIGEFR**************************SEYYFEDRRSPRYYIEERRSPGYNQENPRFGGHSRKTPACFEIVDDRFRD********************************NNSRTLVVRPIKEILGENAPSLEVGKC**************NQKI*****************************************QTQPIT********************APPPNTLEFLLFELGASFMQS*****************************************EFPSCAEAPVTASTINNSAQQSGVSISHGGTSPA************************************************************STAIVPVSFSDEGPPQDKPVVNVDSTVKFPDVQQLNGLQQH*********************PIGHTNNQPWASLLVPNN*************************************TGRKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKSTNPFDIS**********
********ERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAG*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************M*A*PNSVGDST*ESTAIVP********************************************************************************************************************LPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAY***********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDRNSEYYFEDRRSPRYYIEERRSPGYNQENPRFGGHSRKTPACFEIVDDRFRDDVSASRRRSDSISFTNTEHKSRSMSPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGKCSKASDGKDADDSANNQKIAPSGSQQCDDGNPVEQKKSHSESLENSSTDPEPTDTAVAAQQTQPITPSDGDNEPSTEQPVEEKAPVAPPPNTLEFLLFELGASFMQSTDETPPNVSGSNTLAAAASSSNTQPMGGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGTSPAITSGQMSASPSSFAASTNASTTNLSEQPSGDNVPQSSASPAPSSGQMTALPNSVGDSTTESTAIVPVSFSDEGPPQDKPVVNVDSTVKFPDVQQLNGLQQHQTLESSTAVAKRSGSAQQTTTPIGHTNNQPWASLLVPNNQGPCSASAEQSSLALSKPAQDTSSSVGSRSLAVEPKVTGRKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKSTNPFDISSDTTPLQAPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query719 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation no no 0.229 0.254 0.532 6e-48
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.159 0.204 0.396 8e-22
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.159 0.204 0.396 9e-22
P52594562 Arf-GAP domain and FG rep yes no 0.159 0.204 0.396 9e-22
Q2TA45562 Arf-GAP domain and FG rep yes no 0.159 0.204 0.396 1e-21
O95081481 Arf-GAP domain and FG rep no no 0.132 0.197 0.415 1e-15
Q80WC7479 Arf-GAP domain and FG rep no no 0.132 0.198 0.415 2e-15
Q9FL69483 Probable ADP-ribosylation no no 0.152 0.227 0.330 1e-14
Q5F413428 Stromal membrane-associat no no 0.173 0.292 0.294 5e-14
Q8WU79429 Stromal membrane-associat no no 0.176 0.296 0.290 2e-13
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 6/171 (3%)

Query: 1   MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHR 60
           MG+K +E+ER E IIRGL+KLP NRRCINCN LGPQYVCTTF TFVC  CSG+HREFTHR
Sbjct: 2   MGSK-REEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHR 60

Query: 61  VKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDR 116
           VKS+SM+KF+++EV  LQ  GN+RAR+IYLK+WD QR   P+     R+R+FIK+VYV +
Sbjct: 61  VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120

Query: 117 RYAG-EKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGR 166
           +YAG    DK  +           + +  +Y    +SP  + +YE+   G+
Sbjct: 121 KYAGANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGK 171
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
255551110 833 conserved hypothetical protein [Ricinus 0.930 0.803 0.452 1e-147
359484370759 PREDICTED: uncharacterized protein LOC10 0.853 0.808 0.387 1e-108
297743304734 unnamed protein product [Vitis vinifera] 0.509 0.498 0.486 5e-95
225442683740 PREDICTED: probable ADP-ribosylation fac 0.499 0.485 0.481 1e-91
224092380711 predicted protein [Populus trichocarpa] 0.783 0.791 0.384 1e-81
449521856711 PREDICTED: uncharacterized LOC101209764 0.589 0.596 0.429 1e-79
224142117649 predicted protein [Populus trichocarpa] 0.514 0.570 0.440 4e-79
357500413698 Arf-GAP domain and FG repeats-containing 0.438 0.451 0.460 8e-76
357140079704 PREDICTED: uncharacterized protein LOC10 0.646 0.660 0.364 5e-75
356527795691 PREDICTED: uncharacterized protein LOC10 0.573 0.596 0.405 2e-74
>gi|255551110|ref|XP_002516603.1| conserved hypothetical protein [Ricinus communis] gi|223544423|gb|EEF45944.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 332/733 (45%), Positives = 433/733 (59%), Gaps = 64/733 (8%)

Query: 17  GLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSA 76
           GLLK PENRRCINCN LGPQYVCTTFLTFVCTNCSGVHREFTHRVKS+SMAKF+AEEVSA
Sbjct: 17  GLLKQPENRRCINCNSLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSVSMAKFNAEEVSA 76

Query: 77  LQAAGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYAGEKT-DKFLRLRL 131
           LQA GNERARQ+Y K+WDPQR+SYPDG    R+RDFIKHVYVDR+Y+G++  D+  RLRL
Sbjct: 77  LQAGGNERARQLYFKNWDPQRHSYPDGSNLHRLRDFIKHVYVDRKYSGDRARDRLPRLRL 136

Query: 132 GEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDRNSEYYFEDRRSPRYY 191
            EKEDS  S KV  Y G  RSP  E RYE+    RS    RS+D+  +YYF++RRSPRY 
Sbjct: 137 SEKEDSYDSRKVSLYTGGSRSPTYEDRYER----RSHPVGRSDDKTLKYYFDERRSPRY- 191

Query: 192 IEERRSPGYNQENPRFGGHSRKTPACFEIVDDRFRDDVSASRRRSDSISFTNTEHKSRSM 251
                +P    EN R+GG  R +P  FE+VDDRFRDD   S R SD+  F++ +   RS+
Sbjct: 192 -----AP----ENSRYGGLKR-SPVRFEVVDDRFRDDGIPSGRESDNRRFSHRQSSFRSL 241

Query: 252 SPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGKCSKASDGKDADDSANNQKIAPSGSQQ 311
           SP+ +K+ + S + V+RP+K+ILGE+AP L+VG+ SKA+D KD D SA+NQ IA S S+ 
Sbjct: 242 SPDCRKHMDRSSSPVIRPVKDILGESAPRLQVGEHSKATDRKDVDVSAHNQPIASSSSKG 301

Query: 312 CDDGNPVEQKKSHSESLENSSTDPEPTDTAVAAQQTQPITPSDGDNEPSTEQPVEEKAPV 371
            ++G  V+ K  +SESL + +     +D A A Q  +     +  N  S E   ++ A  
Sbjct: 302 SNEGKAVKDKNQNSESLIDFNALSMISDAAAAPQTRENHQSRNEGNCNSDESSTKQDATG 361

Query: 372 APPPNTLEFLLFELGASFMQS--------TDETPPNVSGSNTLAAAAS------------ 411
           AP  NTLEFLL+EL  S ++S         +E P   SG N L +  +            
Sbjct: 362 APKQNTLEFLLYELSVSSVESVGSKSDLLNNENPSTTSGGNALMSGDNILEAVSLGQMLT 421

Query: 412 --SSNTQPM---GGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGTSP 466
             ++N  P    GGN+P A VSP AS+   S       A     SA  +G  +     S 
Sbjct: 422 LRNNNNAPTTAPGGNVPMAGVSPTASMGLMSALPNISGA-----SATSAGGDMPIFNNSS 476

Query: 467 AITSGQMSASPSSFAASTNASTTNLSEQPSGDNVPQSSASPAPSSGQMTALPNSVGDSTT 526
             ++GQ+S S  S   S +A         +GD++     SPA    +  +L ++  D+T 
Sbjct: 477 VASAGQLSTSSDSTTVSKSA---------TGDSMFVGGISPAAPVEKALSLLDTF-DTTA 526

Query: 527 ESTAIVPVSFSDEGPPQDKPVVNVDSTVKFPDVQQLNGLQQHQTLESSTAVAKRSGSAQQ 586
            S   +PV  S+EG     P +  D  +K P+VQQ++G+Q HQ      A   R G    
Sbjct: 527 PSATSLPVQPSNEGTSHALPDIQGDCAIKVPNVQQVSGMQHHQHSVFPPAEG-RPGGKNA 585

Query: 587 TTTPIGHTNNQPWASLLVPNNQGPCSASAEQSSLALSKPAQDTSSSVGSRSLAVEPKVTG 646
           ++T +   NNQPW SL VPN QGP S SAE +S   +K  QD +  + S+ +  E K +G
Sbjct: 586 SSTTVEALNNQPWTSLGVPNAQGPSSVSAEYTSQNATKADQDPNPGIKSQHIIAESKTSG 645

Query: 647 RKELPADLFTASYMPPHAPIPHWQTGHAYGTGFNTQYYPTAMVSQLAPAYSNPAKSTNPF 706
           R+ELPADLF+A Y      IP WQ+   YG  FN Q+Y   M  Q    Y   A S+NPF
Sbjct: 646 REELPADLFSARYSAVPGSIPGWQSAVPYGMRFNVQHYSNTMPMQ---PYPRQATSSNPF 702

Query: 707 DISSDTTPLQAPP 719
           D S+DT+ +Q  P
Sbjct: 703 DFSNDTSLMQVSP 715

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484370|ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera] gi|297738855|emb|CBI28100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743304|emb|CBI36171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442683|ref|XP_002280037.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092380|ref|XP_002309583.1| predicted protein [Populus trichocarpa] gi|222855559|gb|EEE93106.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449521856|ref|XP_004167945.1| PREDICTED: uncharacterized LOC101209764 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142117|ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|222865839|gb|EEF02970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357500413|ref|XP_003620495.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] gi|355495510|gb|AES76713.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357140079|ref|XP_003571599.1| PREDICTED: uncharacterized protein LOC100835421 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356527795|ref|XP_003532492.1| PREDICTED: uncharacterized protein LOC100815114 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query719
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.280 0.321 0.520 1.5e-66
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.271 0.323 0.509 2.6e-63
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.159 0.204 0.396 1.1e-18
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.159 0.212 0.396 1.8e-18
DICTYBASE|DDB_G0267538607 DDB_G0267538 "Arf GTPase activ 0.161 0.191 0.451 1.9e-18
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.159 0.204 0.396 4.6e-18
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.159 0.205 0.396 5.7e-18
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.159 0.204 0.396 5.8e-18
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.159 0.217 0.396 5.3e-17
MGI|MGI:1333754561 Agfg1 "ArfGAP with FG repeats 0.159 0.204 0.396 2.5e-16
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
 Identities = 115/221 (52%), Positives = 145/221 (65%)

Query:     5 IKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSI 64
             +KEDER E  IR LLKLPENRRCINCN LGPQYVC+TF TFVC NCSG+HREFTHRVKS+
Sbjct:     1 MKEDERTEKAIRSLLKLPENRRCINCNSLGPQYVCSTFWTFVCVNCSGIHREFTHRVKSV 60

Query:    65 SMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYAG 120
             SMAKF+A+EVSAL+A GNERARQIY K+WD  R+ YPD     ++RDFI+ VYVD+RY+ 
Sbjct:    61 SMAKFTADEVSALRAGGNERARQIYFKEWDAHRDGYPDRSNIFKLRDFIRSVYVDKRYSS 120

Query:   121 EKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDRNSEY 180
               +DK  + +    ED  +S K  A++   RS  S    ++S   RS    RS   +  +
Sbjct:   121 --SDKISQQKSDVTEDYRESKKTSAHVLGSRSLHS---VDKSDIERSSAAGRSGSESLRF 175

Query:   181 YFEDRRSPRYYIEERRSPGYNQENPRFGGHSRKTPACFEIV 221
             YF+D+   + ++           NPR  G   K+P  FEIV
Sbjct:   176 YFDDKNHKQQHVTH---------NPRSRGLP-KSPIRFEIV 206
GO:0005634 "nucleus" evidence=ISM
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267538 DDB_G0267538 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1333754 Agfg1 "ArfGAP with FG repeats 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 4e-51
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 8e-40
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 1e-35
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 5e-19
COG5347319 COG5347, COG5347, GTPase-activating protein that r 2e-14
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 3e-04
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  189 bits (481), Expect = 4e-51
 Identities = 167/523 (31%), Positives = 244/523 (46%), Gaps = 66/523 (12%)

Query: 1   MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHR 60
           MG++ KE+ER E IIRGL+KLP NRRCINCN LGPQ+VCT F TF+C  CSG+HREFTHR
Sbjct: 1   MGSR-KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHR 59

Query: 61  VKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDR 116
           VKS+SM+KF++++V ALQ  GN+RAR+IYLKDWD QR   PD     +IR+FIK +YVD+
Sbjct: 60  VKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDK 119

Query: 117 RYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRSESRYEQSSSGRSQHRERSNDR 176
           +YAG KT                 +K    +   RS   E+R   S    SQ        
Sbjct: 120 KYAGGKT----------------HDKPPRDLQRIRSHEDETRRACSYHSYSQSPP----- 158

Query: 177 NSEYYFEDRRSPRYYIEERRSPGYN------QENPRFGGHSRKTPACFEIVDDRFRDDVS 230
             ++ +EDRR  +      R PG +      +        +R     FE   DRF ++ S
Sbjct: 159 -YDFQYEDRRYGKQAGILTRKPGSDRGLNVGKMASFICSPTRLNDRMFE---DRFANEGS 214

Query: 231 ASRRRSDSISFTNTEHKSRSMSPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGKCSKAS 290
            S     S+S      +S + SP +QK+   S    ++P K+ILGE+     +   S A 
Sbjct: 215 VSGVSDYSVSSGGDLVRSGAESPNFQKDIAFSPP--IQPPKDILGEDVQQRRIDLFSAAL 272

Query: 291 DGKDADDSANNQKIAPSGSQQCDDGNPVEQKKSHSESLENSSTDPE-----PTDTAVAAQ 345
             + A+   + Q+ A  GS    D   V  K  +S SL +   + E       D   A  
Sbjct: 273 CKQGAEGCPHIQRSASLGSIGSFDSLSVSIKSFNSGSLADIVAEAEQAAGNHQDKMPAFP 332

Query: 346 QTQPITPSDGDNEPSTEQPVEEKAPVAPPPNTLEFLLFELGASFMQSTDETPP-NVSGSN 404
           +          +        E  AP+APP +     LF+L A     T   PP ++    
Sbjct: 333 RMAGSGSHASLDHFKAPVAPEAAAPMAPPID-----LFQLPA-----TSPAPPVDLFEIP 382

Query: 405 TLAAAASSSNTQPMGGNMPEASVSPPASVEFPSCAEAPVTASTINNSAQQSGVSISHGGT 464
            L  A + +  QP          S P+S++         + ++++  + +  +  + G  
Sbjct: 383 PLDPAPAINAYQP-------PQTSLPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWA 435

Query: 465 S----PAITSGQMSASPSSFAAST-NASTTNLSEQPSGDNVPQ 502
           +      I S   + + + F+     A + N  + PS D   Q
Sbjct: 436 TFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQ 478

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 719
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.98
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.92
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.92
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.9
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.9
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.8
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.69
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.65
KOG0521785 consensus Putative GTPase activating proteins (GAP 90.56
KOG0702524 consensus Predicted GTPase-activating protein [Sig 87.62
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 82.56
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-87  Score=728.62  Aligned_cols=310  Identities=41%  Similarity=0.666  Sum_probs=289.1

Q ss_pred             CCcchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCCceeeecccCCCCHHHHHHHHhh
Q 045661            1 MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAA   80 (719)
Q Consensus         1 M~sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLGHRVKSITLDtWT~EEVe~Mq~g   80 (719)
                      |++| |++|+++++|++|+++++|++||||++++|+|||++||||||++|+||||+|+||||||+||+|+++||++|+.+
T Consensus         1 m~Sk-kqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~g   79 (705)
T PLN03131          1 MGSR-KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNG   79 (705)
T ss_pred             Ccch-HHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHh
Confidence            8999 888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCCCCCCCCCch----HHHHHHHHHHhhccccCCCC-chhhhhhccccccccccccccCcccccCCCCC
Q 045661           81 GNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYAGEKT-DKFLRLRLGEKEDSCQSNKVGAYIGEFRSPRS  155 (719)
Q Consensus        81 GN~rAN~IwEa~~pp~rkp~PDS----~re~FIRaKYVdKrF~~~~~-dkppRlk~~~re~s~eSRr~~sy~g~S~SPp~  155 (719)
                      ||.+||+|||++|+..+.+.|+.    ++|+|||.|||+|||+.... ++++|.....+.+..|+||.++||++|+||||
T Consensus        80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY  159 (705)
T PLN03131         80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPY  159 (705)
T ss_pred             ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCc
Confidence            99999999999998776555543    68999999999999999988 99999998989899999999999999999999


Q ss_pred             Cccccc-ccCCCCCcccCCCCCCCccccccCCCcccccccccCCCCCCCC--CCCCCCCCCCCccc--cccccccccccc
Q 045661          156 ESRYEQ-SSSGRSQHRERSNDRNSEYYFEDRRSPRYYIEERRSPGYNQEN--PRFGGHSRKTPACF--EIVDDRFRDDVS  230 (719)
Q Consensus       156 ~~~~e~-~~~~~~~~~grsddkns~y~~~~~~~~~~~~~~~rspg~d~~~--~~~~~~~~ksP~r~--~~~ddrfr~d~~  230 (719)
                      +++||+ ||++++.+.                        +|+||||++.  .|||+|+ |||+||  +|+||||+||++
T Consensus       160 ~~~yedrRygk~~~~~------------------------~R~pg~d~~~~~~k~~~~~-~SP~r~~d~~~eDrf~ne~~  214 (705)
T PLN03131        160 DFQYEDRRYGKQAGIL------------------------TRKPGSDRGLNVGKMASFI-CSPTRLNDRMFEDRFANEGS  214 (705)
T ss_pred             cccccccccccccccc------------------------ccCCccccccccccccccc-cCchhhhhhhhhcccccCCC
Confidence            999999 688877644                        4599999984  9999999 999999  699999999999


Q ss_pred             ccccccccccccCCccccc--CCCcccccccCCCCCccccchhhhhccCCCCcccCCCCCCCCCCCCCCccCccccCCCC
Q 045661          231 ASRRRSDSISFTNTEHKSR--SMSPEYQKNTNNSRTLVVRPIKEILGENAPSLEVGKCSKASDGKDADDSANNQKIAPSG  308 (719)
Q Consensus       231 ~~~~~~~d~~~s~g~~~~~--~~Sp~~~k~~~~sspp~vrp~~~il~~n~~~l~~~~~pk~~~~~~~~~~~~~q~~~ss~  308 (719)
                      ++|  ++||++|+++.+++  .+|||+||+.++ || +|||+|+||||||++|||+||+|++..+++++.+++|||+|+|
T Consensus       215 ~~r--~~d~s~ss~~~~~r~~~~SP~~~k~~~~-Sp-~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssg  290 (705)
T PLN03131        215 VSG--VSDYSVSSGGDLVRSGAESPNFQKDIAF-SP-PIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLG  290 (705)
T ss_pred             Ccc--cccccccccccccccCCCCCCcccccCC-CC-CcccchhhccccccccccCCCcccccccccccccccccccccC
Confidence            997  99999998876555  699999999875 45 4699999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCccccccccCcccCCCCCCCCCcc
Q 045661          309 SQQCDDGNPVEQKKSHSESLENSSTDPEPTDT  340 (719)
Q Consensus       309 s~~s~~~~~~~~k~~~s~sl~d~~~~~ep~~~  340 (719)
                      |+||+||+++++|+++++|||||++|+|+...
T Consensus       291 s~gS~dg~s~s~Ks~~s~sL~D~~~e~~~~~~  322 (705)
T PLN03131        291 SIGSFDSLSVSIKSFNSGSLADIVAEAEQAAG  322 (705)
T ss_pred             cccccCCCccceeecccccccccccCcccccc
Confidence            99999999999999999999999999997544

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 1e-19
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 5e-19
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 6e-12
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 4e-10
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-07
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 3e-07
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 3e-07
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 4e-07
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 6e-07
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 1e-06
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-05
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 8e-05
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 9e-05
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-04
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-04
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 4   KIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT--HRV 61
           K K++E+   ++R +  LP NR+C +C+  GP YV  T  +FVCT+CSG  R     HRV
Sbjct: 5   KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRV 64
Query: 62  KSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGR----IRDFIKHVYVDRR 117
           KSISM  F+ +E+  LQ  GNE  +QI+L  +D + ++ PD R    +++F++  Y  +R
Sbjct: 65  KSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKR 124
Query: 118 Y 118
           +
Sbjct: 125 W 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query719
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 3e-42
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 8e-24
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 3e-23
2owa_A138 Arfgap-like finger domain containing protein; zinc 4e-22
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-20
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 6e-20
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 8e-20
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 1e-19
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 9e-18
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-17
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 3e-17
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 7e-17
3o47_A329 ADP-ribosylation factor GTPase-activating protein 5e-16
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-13
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  149 bits (377), Expect = 3e-42
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 6/126 (4%)

Query: 6   KEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF--THRVKS 63
           K++E+   ++R +  LP NR+C +C+  GP YV  T  +FVCT+CSG  R     HRVKS
Sbjct: 7   KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKS 66

Query: 64  ISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYA 119
           ISM  F+ +E+  LQ  GNE  +QI+L  +D + ++ PD     ++++F++  Y  +R+ 
Sbjct: 67  ISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWY 126

Query: 120 GEKTDK 125
                 
Sbjct: 127 VPPEQA 132
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.97
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.97
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.96
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.95
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.94
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.93
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.93
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 84.53
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
Probab=100.00  E-value=3.4e-38  Score=294.74  Aligned_cols=122  Identities=39%  Similarity=0.720  Sum_probs=111.9

Q ss_pred             CcchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC--ceeeecccCCCCHHHHHHHHh
Q 045661            2 GNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT--HRVKSISMAKFSAEEVSALQA   79 (719)
Q Consensus         2 ~sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG--HRVKSITLDtWT~EEVe~Mq~   79 (719)
                      .++.+++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+||  ||||||+||+|++++|++|+.
T Consensus         3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~   82 (140)
T 2olm_A            3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK   82 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999  699999999999999999999


Q ss_pred             hchHHHHHHHhhcCCCCCCCCCch----HHHHHHHHHHhhccccCCCC
Q 045661           80 AGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYAGEKT  123 (719)
Q Consensus        80 gGN~rAN~IwEa~~pp~rkp~PDS----~re~FIRaKYVdKrF~~~~~  123 (719)
                      +||.++|++||+++++...+.|+.    .+++||++||++|+|+.+..
T Consensus        83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~  130 (140)
T 2olm_A           83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE  130 (140)
T ss_dssp             CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred             hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence            999999999999998755455542    68899999999999997543
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 719
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 2e-30
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 2e-30
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 14  IIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT---HRVKSISMAKFS 70
           II  + ++  N  C +C    P ++ T      C  CSG+HRE      R++S+++    
Sbjct: 5   IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 64

Query: 71  AEEVSALQAAGNERARQIYLKDWDPQRNSYPDGR-----IRDFIKHVYVDRRYAGEK 122
             E+   +  GN    +I       +    P+        +D+I   Y++RRYA +K
Sbjct: 65  TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 121

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query719
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 86.06
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-37  Score=278.09  Aligned_cols=112  Identities=26%  Similarity=0.537  Sum_probs=103.1

Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC---ceeeecccCCCCHHHHHHHHhhchHHHHH
Q 045661           11 IEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT---HRVKSISMAKFSAEEVSALQAAGNERARQ   87 (719)
Q Consensus        11 nekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG---HRVKSITLDtWT~EEVe~Mq~gGN~rAN~   87 (719)
                      ++++|++|++.|+|++|||||+.+|+|||++||||||++|+||||+||   |+|||++||+|++++|++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            478999999999999999999999999999999999999999999999   59999999999999999999999999999


Q ss_pred             HHhhcCCCCC--CCCCch---HHHHHHHHHHhhccccCCC
Q 045661           88 IYLKDWDPQR--NSYPDG---RIRDFIKHVYVDRRYAGEK  122 (719)
Q Consensus        88 IwEa~~pp~r--kp~PDS---~re~FIRaKYVdKrF~~~~  122 (719)
                      +||++++...  ++.+++   .|++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            9999997643  344443   7899999999999999764
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure