Citrus Sinensis ID: 045684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
TASQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLESVCNDESSSSTERSRDQAEKELQRHVLNTDALI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEcEEEcccccEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEccccHccccccccccccHHHHHHcHHHHHccccccccccc
Coil and Loop (DISEMBL)
tasqdqnvveapdtqpppakkdrhyrgvrrrqwgtyaaeirdsnpkkkgarvwlgtyktpegaaLAYDRAAFKMRgskaklnfphllesvcndessssteRSRDQAEKELQRHVLNTDALI
Flexible Loop (DISEMBL)
tasqdqnvveapdtqpppakkdrhyrgvrrrqwgtyaaeirdsnpkkkgarvWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLEsvcndesssstersrdqaekelqrhvlntdali
Low Complexity Region (SEG)
TASQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLESVCNdesssstersrdQAEKELQRHVLNTDALI
Disordered region (IsUnstruct)
******************************RQWGTYAAEI********GARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLL**********************************
Disordered Region (DISOPRED)
***************************VRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPH************************************
Disordered Region (DISEMBL)
**************************GVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLES*********************QRHVLNTDALI
Disordered Region (DISPRO)
**********************RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLES********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TASQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLESVCNDESSSSTERSRDQAEKELQRHVLNTDALI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.586	0.314	0.739	7e-26
Q40479	233	Ethylene-responsive trans	N/A	no	0.520	0.270	0.753	6e-23
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.520	0.265	0.753	8e-23
Q40476	236	Ethylene-responsive trans	N/A	no	0.520	0.266	0.738	2e-22
O80337	268	Ethylene-responsive trans	no	no	0.528	0.238	0.727	7e-22
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.603	0.299	0.662	1e-21
Q8VY90	221	Ethylene-responsive trans	no	no	0.611	0.334	0.649	5e-21
O80338	243	Ethylene-responsive trans	no	no	0.528	0.263	0.712	5e-21
Q9FH54	248	Ethylene-responsive trans	no	no	0.776	0.379	0.556	9e-21
O04681	161	Pathogenesis-related gene	N/A	no	0.495	0.372	0.741	1e-20

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 61/73 (83%), Gaps = 2/73 (2%)

Query: 18  PAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGS 77
           P +K   YRGVRRR WG +AAEIRD  PKK GARVWLGTY+TPE AA+AYDRAAF++RGS
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS 142

Query: 78  KAKLNFPHLLESV 90
           KAKLNFPHL+ S 
Sbjct: 143 KAKLNFPHLIGSC 155

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 55/65 (84%), Gaps = 2/65 (3%)

Query: 21  KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK 80
           K RHYRGVR+R WG +AAEIRD  P K GARVWLGTY+T E AALAYD+AA++MRGSKA 
Sbjct: 95  KGRHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKAL 152

Query: 81  LNFPH 85
           LNFPH
Sbjct: 153 LNFPH 157

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 55/65 (84%), Gaps = 2/65 (3%)

Query: 21  KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK 80
           K RHYRGVR+R WG +AAEIRD  P K GARVWLGTY+T E AALAYD+AA++MRGSKA 
Sbjct: 99  KGRHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKAL 156

Query: 81  LNFPH 85
           LNFPH
Sbjct: 157 LNFPH 161

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 55/65 (84%), Gaps = 2/65 (3%)

Query: 21  KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK 80
           + RHYRGVRRR WG +AAEIRD  P K GARVWLGTY+T E AA+AYD+AA++MRGSKA 
Sbjct: 101 RGRHYRGVRRRPWGKFAAEIRD--PAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAH 158

Query: 81  LNFPH 85
           LNFPH
Sbjct: 159 LNFPH 163

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 2/66 (3%)

Query: 19  AKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSK 78
           A K +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRAAF+MRGS+
Sbjct: 142 AAKGKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSR 199

Query: 79  AKLNFP 84
           A LNFP
Sbjct: 200 ALLNFP 205

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 59/77 (76%), Gaps = 4/77 (5%)

Query: 11  APDTQPPPA--KKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYD 68
           +P T  P A   K RHYRGVR+R WG +AAEIRD  P K GARVWLGTY++ E AALAY 
Sbjct: 91  SPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTYESAEEAALAYG 148

Query: 69  RAAFKMRGSKAKLNFPH 85
           +AAF+MRG+KA LNFPH
Sbjct: 149 KAAFRMRGTKALLNFPH 165

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 55/77 (71%), Gaps = 3/77 (3%)

Query: 9   VEAPDTQPPPAKKD-RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAY 67
           +  P T P   + D RHYRGVRRR WG YAAEIRD  P KKG RVWLGT+ T   AA  Y
Sbjct: 55  IAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRD--PNKKGVRVWLGTFDTAMEAARGY 112

Query: 68  DRAAFKMRGSKAKLNFP 84
           D+AAFK+RGSKA LNFP
Sbjct: 113 DKAAFKLRGSKAILNFP 129

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 54/66 (81%), Gaps = 2/66 (3%)

Query: 19  AKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSK 78
           A K +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYD AAF+MRGS+
Sbjct: 111 AVKAKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDIAAFRMRGSR 168

Query: 79  AKLNFP 84
           A LNFP
Sbjct: 169 ALLNFP 174

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 63/97 (64%), Gaps = 3/97 (3%)

Query: 4   QDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGA 63
           QD N   AP  Q     + RHYRGVR+R WG +AAEIRD    KK ARVWLGT++T E A
Sbjct: 69  QDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRD---PKKAARVWLGTFETAESA 125

Query: 64  ALAYDRAAFKMRGSKAKLNFPHLLESVCNDESSSSTE 100
           ALAYD AA K +GSKAKLNFP  ++   N    SS +
Sbjct: 126 ALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQ 162

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 52/62 (83%), Gaps = 2/62 (3%)

Query: 23  RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
           + YRGVRRR WG YAAEIRDS   + GARVWLGT++T E AALAYDRAAF+MRG+KA LN
Sbjct: 57  KKYRGVRRRPWGKYAAEIRDS--ARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLN 114

Query: 83  FP 84
           FP
Sbjct: 115 FP 116

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
356531816	203	PREDICTED: ethylene-responsive transcrip	0.834	0.497	0.628	9e-27
351723731	202	ethylene-responsive element binding prot	0.735	0.440	0.680	2e-26
255630234	187	unknown [Glycine max]	0.735	0.475	0.680	2e-26
292668939	278	AP2 domain class transcription factor [M	0.661	0.287	0.702	3e-26
224137172	226	AP2/ERF domain-containing transcription	0.735	0.393	0.673	2e-25
224137170	227	AP2/ERF domain-containing transcription	0.652	0.348	0.710	3e-25
255541056	223	Ethylene-responsive transcription factor	0.793	0.430	0.613	5e-25
356520778	205	PREDICTED: ethylene-responsive transcrip	0.603	0.356	0.727	2e-24
297810185	162	hypothetical protein ARALYDRAFT_912253 [	0.661	0.493	0.662	3e-24
15225361	226	ethylene-responsive transcription factor	0.586	0.314	0.739	3e-24

>gi|356531816|ref|XP_003534472.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 71/105 (67%), Gaps = 4/105 (3%)

Query: 3   SQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEG 62
           S+D   V A D   PP  K  HYRGVRRR WG +AAEIRD  PKK GARVWLGTY T E 
Sbjct: 58  SEDATAVVARDVHAPPTWK--HYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYDTEEK 113

Query: 63  AALAYDRAAFKMRGSKAKLNFPHLLESVCNDESSSSTERSRDQAE 107
           AALAYD+AAFKMRG KAKLNFPHL++S    E    T   R  AE
Sbjct: 114 AALAYDKAAFKMRGRKAKLNFPHLIDSDMLSEEVMVTTSKRSLAE 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723731|ref|NP_001237801.1| ethylene-responsive element binding protein 1 [Glycine max] gi|21304712|gb|AAM45475.1| ethylene-responsive element binding protein 1 [Glycine max]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 5/94 (5%)

Query: 3   SQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEG 62
           S+D   V A D  PP  K   HYRGVRRR WG +AAEIRD  PKK GARVWLGTY T E 
Sbjct: 58  SEDATAVVARDHAPPTWK---HYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYDTEEK 112

Query: 63  AALAYDRAAFKMRGSKAKLNFPHLLESVCNDESS 96
           AALAYD+AAFKMRG KAKLNFPHL++S  +DE S
Sbjct: 113 AALAYDKAAFKMRGQKAKLNFPHLIDSDNSDELS 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630234|gb|ACU15472.1| unknown [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 5/94 (5%)

Query: 3   SQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEG 62
           S+D   V A D  PP  K   HYRGVRRR WG +AAEIRD  PKK GARVWLGTY T E 
Sbjct: 58  SEDATAVVARDHAPPTWK---HYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYDTEEK 112

Query: 63  AALAYDRAAFKMRGSKAKLNFPHLLESVCNDESS 96
           AALAYD+AAFKMRG KAKLNFPHL++S  +DE S
Sbjct: 113 AALAYDKAAFKMRGQKAKLNFPHLIDSDNSDELS 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668939|gb|ADE41124.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 4/84 (4%)

Query: 6   QNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAAL 65
           Q +V   +T  PP+++  H+RGVRRR WG YAAEIRD  PKK GARVWLGTY+T EGAAL
Sbjct: 113 QEIVVVRETHTPPSRQ--HFRGVRRRPWGKYAAEIRD--PKKNGARVWLGTYETAEGAAL 168

Query: 66  AYDRAAFKMRGSKAKLNFPHLLES 89
           AYD+AAFK+RGSKAKLNFPHL+ S
Sbjct: 169 AYDQAAFKIRGSKAKLNFPHLIGS 192

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137172|ref|XP_002327054.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835369|gb|EEE73804.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 70/92 (76%), Gaps = 3/92 (3%)

Query: 13  DTQPPPAK-KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAA 71
           ++ P P K K   Y+GVRRR WG YAAEIRD  PKK GAR+WLGTY+TPE AALAYDRAA
Sbjct: 105 ESGPQPLKEKGLQYKGVRRRPWGKYAAEIRD--PKKNGARMWLGTYETPEDAALAYDRAA 162

Query: 72  FKMRGSKAKLNFPHLLESVCNDESSSSTERSR 103
           FKMRGSKAKLNFPHL+ S  N E +  T + R
Sbjct: 163 FKMRGSKAKLNFPHLIGSNNNWEPTRVTSKKR 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137170|ref|XP_002327053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835368|gb|EEE73803.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 68/83 (81%), Gaps = 4/83 (4%)

Query: 7   NVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALA 66
           +V +A +  PPP  K R+Y+GVRRR WG YAAEIRD  PKK GAR WLGTY+TPE AA+A
Sbjct: 103 SVEDASNYLPPP--KGRNYKGVRRRPWGKYAAEIRD--PKKNGARQWLGTYETPEDAAMA 158

Query: 67  YDRAAFKMRGSKAKLNFPHLLES 89
           YDRAAFKMRG+KAKLNFPHL+ S
Sbjct: 159 YDRAAFKMRGAKAKLNFPHLIGS 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541056|ref|XP_002511592.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548772|gb|EEF50261.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 75/106 (70%), Gaps = 10/106 (9%)

Query: 18  PAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGS 77
           P +K R+Y GVR+R WGTYAAEIRD  PKK GARVWLGTY+TPE AALAYDRAAFKMRG+
Sbjct: 94  PTRK-RNYMGVRKRPWGTYAAEIRD--PKKNGARVWLGTYETPEDAALAYDRAAFKMRGT 150

Query: 78  KAKLNFPHLLES-------VCNDESSSSTERSRDQAEKELQRHVLN 116
           KAKLNFPHL+ S       V N   S  ++ S  +  K  +R V N
Sbjct: 151 KAKLNFPHLIGSDDLEPVRVSNRRRSPESDESSPKRRKSEKRLVAN 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520778|ref|XP_003529037.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 61/77 (79%), Gaps = 4/77 (5%)

Query: 13  DTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAF 72
           +   PP  K  HYRGVRRR WG +AAEIRD  PKK GAR+WLGTY+T E A LAYDRAAF
Sbjct: 76  EVHAPPVWK--HYRGVRRRTWGKFAAEIRD--PKKNGARIWLGTYETEEAAGLAYDRAAF 131

Query: 73  KMRGSKAKLNFPHLLES 89
           KMRGSKAKLNFPHL+ S
Sbjct: 132 KMRGSKAKLNFPHLIGS 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810185|ref|XP_002872976.1| hypothetical protein ARALYDRAFT_912253 [Arabidopsis lyrata subsp. lyrata] gi|297318813|gb|EFH49235.1| hypothetical protein ARALYDRAFT_912253 [Arabidopsis lyrata subsp. lyrata]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 3/83 (3%)

Query: 5   DQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAA 64
           D +++ A D+  PP ++  +Y+GVRRR WG YAAEIRD  P K GAR+WLGTY+TPE AA
Sbjct: 26  DFDLLTAQDSSSPP-RRSANYKGVRRRPWGKYAAEIRD--PNKNGARIWLGTYETPEEAA 82

Query: 65  LAYDRAAFKMRGSKAKLNFPHLL 87
           +AYD+AAFKMRGSKAKLNFPHL+
Sbjct: 83  VAYDQAAFKMRGSKAKLNFPHLI 105

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 61/73 (83%), Gaps = 2/73 (2%)

Query: 18  PAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGS 77
           P +K   YRGVRRR WG +AAEIRD  PKK GARVWLGTY+TPE AA+AYDRAAF++RGS
Sbjct: 85  PRQKGMQYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS 142

Query: 78  KAKLNFPHLLESV 90
           KAKLNFPHL+ S 
Sbjct: 143 KAKLNFPHLIGSC 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.578	0.309	0.75	5.9e-25
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.595	0.268	0.662	1.9e-21
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.702	0.323	0.595	4.9e-21
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.611	0.334	0.649	4.9e-21
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.677	0.330	0.611	4.9e-21
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.661	0.329	0.607	1e-20
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.644	0.367	0.595	3.5e-20
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.528	0.211	0.666	9.2e-20
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.628	0.315	0.589	9.2e-20
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.570	0.23	0.619	3.1e-19

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 54/72 (75%), Positives = 61/72 (84%)

Query:    18 PAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGS 77
             P +K   YRGVRRR WG +AAEIRD  PKK GARVWLGTY+TPE AA+AYDRAAF++RGS
Sbjct:    85 PRQKGMQYRGVRRRPWGKFAAEIRD--PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS 142

Query:    78 KAKLNFPHLLES 89
             KAKLNFPHL+ S
Sbjct:   143 KAKLNFPHLIGS 154

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/74 (66%), Positives = 58/74 (78%)

Query:    11 APDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRA 70
             +P +    A K +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRA
Sbjct:   134 SPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRA 191

Query:    71 AFKMRGSKAKLNFP 84
             AF+MRGS+A LNFP
Sbjct:   192 AFRMRGSRALLNFP 205

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 53/89 (59%), Positives = 61/89 (68%)

Query:     4 QDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGA 63
             QD N   AP TQ     + RHYRGVR+R WG +AAEIRD  P+K  ARVWLGT++T E A
Sbjct:    72 QDPNP-PAPPTQDQGLLRKRHYRGVRQRPWGKWAAEIRD--PQK-AARVWLGTFETAEAA 127

Query:    64 ALAYDRAAFKMRGSKAKLNFPHLLESVCN 92
             ALAYD AA K +GSKAKLNFP   +   N
Sbjct:   128 ALAYDNAALKFKGSKAKLNFPERAQLASN 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/77 (64%), Positives = 55/77 (71%)

Query:     9 VEAPDTQPPPAKKD-RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAY 67
             +  P T P   + D RHYRGVRRR WG YAAEIRD  P KKG RVWLGT+ T   AA  Y
Sbjct:    55 IAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRD--PNKKGVRVWLGTFDTAMEAARGY 112

Query:    68 DRAAFKMRGSKAKLNFP 84
             D+AAFK+RGSKA LNFP
Sbjct:   113 DKAAFKLRGSKAILNFP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/85 (61%), Positives = 60/85 (70%)

Query:     4 QDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGA 63
             QD N   AP  Q     + RHYRGVR+R WG +AAEIRD  PKK  ARVWLGT++T E A
Sbjct:    69 QDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRD--PKK-AARVWLGTFETAESA 125

Query:    64 ALAYDRAAFKMRGSKAKLNFPHLLE 88
             ALAYD AA K +GSKAKLNFP  ++
Sbjct:   126 ALAYDEAALKFKGSKAKLNFPERVQ 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 51/84 (60%), Positives = 62/84 (73%)

Query:     1 TASQDQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTP 60
             TA +++     P T+   A K +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T 
Sbjct:    95 TAMEEKPKKAIPVTET--AVKAKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETA 150

Query:    61 EGAALAYDRAAFKMRGSKAKLNFP 84
             E AALAYD AAF+MRGS+A LNFP
Sbjct:   151 EDAALAYDIAAFRMRGSRALLNFP 174

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/84 (59%), Positives = 61/84 (72%)

Query:     5 DQNVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAA 64
             D++    PD   P   + RHYRGVR+R WG +AAEIRD  PKK  ARVWLGT++T E AA
Sbjct:    22 DKSDQHQPDQDQP---RRRHYRGVRQRPWGKWAAEIRD--PKK-AARVWLGTFETAEEAA 75

Query:    65 LAYDRAAFKMRGSKAKLNFPHLLE 88
             LAYDRAA K +G+KAKLNFP  ++
Sbjct:    76 LAYDRAALKFKGTKAKLNFPERVQ 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/66 (66%), Positives = 54/66 (81%)

Query:    19 AKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSK 78
             A + +HYRGVR+R WG +AAEIRD  P K GARVWLGT+ + E AA+AYDRAA++MRGS+
Sbjct:   143 ASRGKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSR 200

Query:    79 AKLNFP 84
             A LNFP
Sbjct:   201 ALLNFP 206

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 46/78 (58%), Positives = 55/78 (70%)

Query:     7 NVVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALA 66
             +V     T+    +++RHYRGVRRR WG YAAEIRD  P KKG R+WLGTY T   A  A
Sbjct:    70 SVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRD--PNKKGCRIWLGTYDTAVEAGRA 127

Query:    67 YDRAAFKMRGSKAKLNFP 84
             YD+AAF++RG KA LNFP
Sbjct:   128 YDQAAFQLRGRKAILNFP 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:    14 TQPPPAKKDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFK 73
             T+P   ++ +HYRGVR+R WG +AAEIRD  P K+G+RVWLGT+ T   AA AYD AAF+
Sbjct:   145 TKPVSEEEKKHYRGVRQRPWGKFAAEIRD--PNKRGSRVWLGTFDTAIEAARAYDEAAFR 202

Query:    74 MRGSKAKLNFP 84
             +RGSKA LNFP
Sbjct:   203 LRGSKAILNFP 213

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9K1	ERF99_ARATH	No assigned EC number	0.7397	0.5867	0.3141	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-29
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	8e-27
pfam00847	53	pfam00847, AP2, AP2 domain	3e-10

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  101 bits (253), Expect = 1e-29
 Identities = 41/67 (61%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNF 83
           YRGVR+R WG + AEIRD     KG RVWLGT+ T E AA AYDRAAFK RG  A+LNF
Sbjct: 1  KYRGVRQRPWGKWVAEIRDP---SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57

Query: 84 PHLLESV 90
          P+ L   
Sbjct: 58 PNSLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 93.9 bits (234), Expect = 8e-27
 Identities = 38/63 (60%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNF 83
           YRGVR+R WG + AEIRD      G R+WLGT+ T E AA AYDRAA K+RGS A LNF
Sbjct: 2  KYRGVRQRPWGKWVAEIRD---PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

Query: 84 PHL 86
          P  
Sbjct: 59 PDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.5 bits (124), Expect = 3e-10
 Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 24 HYRGVRRR-QWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRG 76
           Y+GVR   +WG + AEIRD   KKK  R  LGT+ T E AA A   A  K+RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKK-RFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.88
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.66
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.36
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	87.06

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.88  E-value=6.1e-23  Score=129.92  Aligned_cols=59  Identities=64%  Similarity=1.128  Sum_probs=56.0

Q ss_pred             CceeeEEECCCCcEEEEEecCCCCCC--CcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 045684           23 RHYRGVRRRQWGTYAAEIRDSNPKKK--GARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHL   86 (121)
Q Consensus        23 S~yrGV~~~~~gkW~A~I~~~~~~~~--gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFP~~   86 (121)
                      |+|+||+++++|||+|+|++     +  |+.++||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~-----~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRD-----PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEe-----CCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            78999998878999999999     5  89999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=5e-21  Score=122.50  Aligned_cols=63  Identities=67%  Similarity=1.165  Sum_probs=57.5

Q ss_pred             ceeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 045684           24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLLES   89 (121)
Q Consensus        24 ~yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFP~~~~~   89 (121)
                      +|+||+++++|||+|+|++  +. +|+.++||+|+|+||||.|||.++++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~--~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRD--PS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEe--cC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899998888999999998  33 478999999999999999999999999999999999997653

>PHA00280 putative NHN endonuclease

Probab=99.66  E-value=1.9e-16  Score=113.60  Aligned_cols=65  Identities=14%  Similarity=0.219  Sum_probs=56.7

Q ss_pred             cCCCCCCCCCCCCCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 045684           10 EAPDTQPPPAKKDRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK   80 (121)
Q Consensus        10 ~~~~~~~~~~~~tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~   80 (121)
                      ++...+..++.++|||+||+ .+..|||+|+|.+     +||+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        54 eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~-----~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         54 ENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA-----EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE-----CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            34444456678999999999 6688999999999     999999999999999999997 77889999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.36  E-value=2.6e-12  Score=79.30  Aligned_cols=53  Identities=28%  Similarity=0.407  Sum_probs=45.8

Q ss_pred             CceeeEE-ECCCCcEEEEEecCCCCCCC--cEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 045684           23 RHYRGVR-RRQWGTYAAEIRDSNPKKKG--ARVWLGTYKTPEGAALAYDRAAFKMRGS   77 (121)
Q Consensus        23 S~yrGV~-~~~~gkW~A~I~~~~~~~~g--k~i~LG~f~t~eeAA~AYd~aa~~~~G~   77 (121)
                      |+|+||+ .+..++|+|+|++  +..+|  |.++||.|++++||+++++.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~--~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRV--WSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEE--CCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEE--cccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899998 6678999999998  33233  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=87.06  E-value=2.6  Score=24.70  Aligned_cols=41  Identities=15%  Similarity=0.110  Sum_probs=29.5

Q ss_pred             cEEEEEe-cCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhc
Q 045684           35 TYAAEIR-DSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMR   75 (121)
Q Consensus        35 kW~A~I~-~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~   75 (121)
                      +|...|. ..+...+.++++-+.|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888884 3211223367899999999999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-21
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-21

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 21 KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK 80
          K +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRAAF+MRGS+A 
Sbjct: 2  KGKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL 59
Query: 81 LNFPHLLES 89
          LNFP  + S
Sbjct: 60 LNFPLRVNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%)
Query: 23 RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
          +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRAAF+MRGS+A LN
Sbjct: 1  KHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58
Query: 83 FP 84
          FP
Sbjct: 59 FP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-36

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  117 bits (296), Expect = 2e-36
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 2/65 (3%)

Query: 23 RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
          +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRAAF+MRGS+A LN
Sbjct: 1  KHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58

Query: 83 FPHLL 87
          FP  +
Sbjct: 59 FPLRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.08
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	89.17
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	85.08

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.1e-26  Score=148.40  Aligned_cols=62  Identities=74%  Similarity=1.284  Sum_probs=58.0

Q ss_pred             ceeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 045684           24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLL   87 (121)
Q Consensus        24 ~yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFP~~~   87 (121)
                      +|+||+++++|||+|+|++  +.++|+++|||+|+|+||||+|||.++++++|.++.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~--~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEE--TTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEcc--ccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999998889999999999  6666899999999999999999999999999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.08  E-value=0.082  Score=34.34  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             CCCCceeeEE-ECCCCcEEEEEec
Q 045684           20 KKDRHYRGVR-RRQWGTYAAEIRD   42 (121)
Q Consensus        20 ~~tS~yrGV~-~~~~gkW~A~I~~   42 (121)
                      ..+|+|+||+ .++.+.|.|+-..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e   26 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD   26 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec
Confidence            4579999999 7788999999998

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=89.17  E-value=0.06  Score=38.78  Aligned_cols=38  Identities=8%  Similarity=-0.082  Sum_probs=28.4

Q ss_pred             eeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHH
Q 045684           25 YRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYD   68 (121)
Q Consensus        25 yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd   68 (121)
                      ++||.....++|.+.|..     + +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~-----~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI-----S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE-----C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE-----c-CCceEEeeCCHHHHHHHHC
Confidence            355543233568899988     5 5678999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=85.08  E-value=1.2  Score=33.57  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             eeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 045684           26 RGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKM   74 (121)
Q Consensus        26 rGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~   74 (121)
                      .||++++.|.|..+...     +||++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~-----~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR-----TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT-----TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec-----CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            36877777899988766     788999996  8888888776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.2 bits (245), Expect = 3e-29
 Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 2/63 (3%)

Query: 23 RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
          +HYRGVR+R WG +AAEIRD  P K GARVWLGT++T E AALAYDRAAF+MRGS+A LN
Sbjct: 1  KHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58

Query: 83 FPH 85
          FP 
Sbjct: 59 FPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=6.8e-27  Score=148.13  Aligned_cols=61  Identities=75%  Similarity=1.295  Sum_probs=57.1

Q ss_pred             ceeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 045684           24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHL   86 (121)
Q Consensus        24 ~yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFP~~   86 (121)
                      +|+||+++++|||+|+|++  +.++++++|||+|+|+||||+|||.++++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~--~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEE--TTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEec--CCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999998788999999998  666789999999999999999999999999999999999974