Citrus Sinensis ID: 045719

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRGRPNSKANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDVDNNYQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcEEcccccHHHHHHHHccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccEEEEEcccccccccccccccccccccccEEEEEEccccEEEEEcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccEEEcccccccccEEEEcccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHccccccccccccHccccccccHEEEEcccEEEEEEcccccccccccccccccccccccEEEEEEcccEEEEEEcccccccccccHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHccccccEccccccc
Coil and Loop (DISEMBL)
mvlseskntnsigidvsvcgctirsthglpcaHEIVEykresrpipleciDSHWKKLDLIRNHnkrkvemsygPIFDLIAKRFNENDDDMKLHILQKLAEianphttsliepeakkntrgrpnskanastcrdpsAFEIVLsgkeicsptvafmrpavkvngnkqpkqkvykknslksnpfvnefPAALQSYIHHikdvapdgncgfRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYfencpgsdkwmtmpdmGHLIASAYNIVVFHLSMKqcltflplrsnpvptdsrkeiaigfvnnNHFVEVFllpghpiphvainWQRFHSFCAKGWETIYNHRIQHFKeiiggdvatkeiidvdnnyq
Flexible Loop (DISEMBL)
mvlseskntnsigidvsVCGCTIRSTHGLPCAHEIVeykresrpipLECIDSHWKKLDLIRNhnkrkvemsyGPIFDLIAKRFNENDDDMKLHILQKLAEianphttsliepeakkntrgrpnskanastcrdpsAFEIVLSGKEICSPTVAFMRPAVkvngnkqpkqkvykknslksnpFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKeiiggdvatkeiidvdnnyq
Low Complexity Region (SEG)
MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRGRPNSKANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDVDNNYQ
Disordered region (IsUnstruct)
***********IGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIA*********************************AFEIVLSGKEICSPTVAFMRPAVK********************PFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDV*****
Disordered Region (DISOPRED)
*V*****NTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDL***********SYGPIFDL*****************QKLAE***************************************************************************************ALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEII*****************
Disordered Region (DISEMBL)
********TNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEA****************CRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDVDNNYQ
Disordered Region (DISPRO)
MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPH********************************************************************NSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDVD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRGRPNSKANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATKEIIDVDNNYQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
297744547	701	unnamed protein product [Vitis vinifera]	0.697	0.382	0.418	1e-69
356499731	878	PREDICTED: uncharacterized protein LOC10	0.916	0.400	0.376	4e-66
356536595	877	PREDICTED: uncharacterized protein LOC10	0.945	0.413	0.363	8e-62
147776975	773	hypothetical protein VITISV_001036 [Viti	0.523	0.260	0.497	1e-55
92893886	985	Ovarian tumour, otubain [Medicago trunca	0.950	0.370	0.288	2e-37
87241356	795	Ovarian tumour, otubain [Medicago trunca	0.950	0.459	0.286	4e-36
357489433	430	hypothetical protein MTR_5g062340 [Medic	0.916	0.818	0.285	2e-34
357438051	1379	Cysteine-rich receptor-like protein kina	0.903	0.251	0.289	3e-34
124361025	1063	Ovarian tumour, otubain, putative [Medic	0.950	0.343	0.283	3e-34
357501471	430	hypothetical protein MTR_7g006230 [Medic	0.901	0.804	0.290	2e-33

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/327 (41%), Positives = 183/327 (55%), Gaps = 59/327 (18%)

Query: 1   MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI 60
           +++ E+  + SIG+D S CGC    THGLPCAHEI  YK   +PIPL C+D HW+KLDL+
Sbjct: 352 ILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDLV 411

Query: 61  RNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRG 120
               K+  ++S+    +L  KRF + DD  K  ++ KL E+ N  +TSL+ P        
Sbjct: 412 SVSGKKVQDVSFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAP-------- 463

Query: 121 RPNSKANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNP 180
               K N  T             KE C+ +                              
Sbjct: 464 ----KENVKT-------------KEGCTSS------------------------------ 476

Query: 181 FVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYS 240
               FP  LQ YI H+KDVA DGNCGFR IA  MG GE GW QVR+D+L EL      Y+
Sbjct: 477 ----FPEGLQPYIMHVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWAEYA 532

Query: 241 HLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPL 300
            L+    RV+ELIH + +F++    D+WMTMPDMGH+IAS YN+V+ ++SM+ CLTFLPL
Sbjct: 533 QLFRDPIRVDELIHVLEHFQSPADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPL 592

Query: 301 RSNPVPTDSRKEIAIGFVNNNHFVEVF 327
           RS P P   R+ ++IGF+N+NHFVE +
Sbjct: 593 RSAPTPLPMRRVLSIGFINDNHFVETW 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 203/372 (54%), Gaps = 20/372 (5%)

Query: 2   VLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI- 60
           +  E     + GID S+CGC +R+THGLPCA E+  Y     PIPLE I +HW+KL    
Sbjct: 508 ITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAIHAHWRKLKFSD 567

Query: 61  RNHNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRG 120
              N    E+S  P  D + KRF E D   K+ ++ KL E+A P T     P  +  T+G
Sbjct: 568 HGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPEEVGTKG 627

Query: 121 RPNS---KANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQK-VYKKNSL 176
            P     K++ ST  DPS  E+ L             RPA     +    QK V++    
Sbjct: 628 APEGLRWKSDGSTKFDPSYLELAL-------------RPARDSTSSLSSSQKTVHESKRR 674

Query: 177 KSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM 236
           +  P +++FP  +  +I  I DV  D NCG+RA+A  +G GE  W  VR+DL+ EL    
Sbjct: 675 RVLPMMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQ 734

Query: 237 EHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLT 296
           ++Y+ L+G+ +RV EL  ++ Y         WMT+PDMG++IAS YN+V+  LS+++C+T
Sbjct: 735 DNYAKLFGSNDRVAELRKSL-YVGKQASVASWMTIPDMGYVIASRYNVVLVTLSLQECMT 793

Query: 297 FLPLRSN-PVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETI 355
           F PLR   P+   S + I+IGFV+  HFV+V L     IP  A+ W R+ +  ++ WET 
Sbjct: 794 FFPLRGRPPLSQSSHRLISIGFVHKCHFVQVVLKADSAIPPTALQWSRYCNAESRSWETS 853

Query: 356 YNHRIQHFKEII 367
           Y  R+Q F+ + 
Sbjct: 854 YVSRMQQFRSLF 865

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 207/385 (53%), Gaps = 22/385 (5%)

Query: 2   VLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIR 61
           ++ E     + GID S+CGC +R+THGLPCA E+  Y     PIPLE I  HW+KL    
Sbjct: 505 IIDEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYNTMCHPIPLEAIHVHWRKLKFSD 564

Query: 62  N-HNKRKVEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRG 120
           +  N    E+S  P    +  RF E D   K+ ++ KL EIA P   S   P  +  T+ 
Sbjct: 565 HVSNDEGTELSLQPEIGALYNRFQELDYAGKIILMAKLHEIAFPVKISKCPPLEEVGTKH 624

Query: 121 R---PNSKANASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQK-VYKKNSL 176
               P  K++ ST  DPS +E V +           + P   +  +    QK V++    
Sbjct: 625 ALEGPRLKSDGSTKFDPSYWEHVHA-----------LHPTHDITKSLPSSQKPVHESKRR 673

Query: 177 KSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM 236
           +  P +++FP  +  +I  I DV  D NCG+RA+A  +G GE  W  VR+DL+ EL    
Sbjct: 674 RVLPMMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQ 733

Query: 237 EHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLT 296
           ++Y+ L+G+ +RV EL  ++ Y         WMT+PDMG++IAS YN+V+  LS+++C+T
Sbjct: 734 DNYAKLFGSNDRVAELRQSL-YVGKQASVASWMTIPDMGYVIASRYNVVLVTLSLQECMT 792

Query: 297 FLPLRSN-PVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETI 355
           F PLR   P+   S + I+IGFV+  HFV+V L     +P  A+ W R+ +  ++ WET 
Sbjct: 793 FFPLRGRPPLSQSSYRLISIGFVHKCHFVQVVLKADSVLPPTALQWSRYCNAESRSWETS 852

Query: 356 YNHRIQHFKEIIGGDVATKEIIDVD 380
           Y  R+Q F+ +       KEI  VD
Sbjct: 853 YVSRMQQFRSLF----PQKEIGYVD 873

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 138/201 (68%)

Query: 182 VNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSH 241
            + FP  LQ YI H+KDVA DGNCGFR IA  MG GE GW QVR+D+L EL    + Y+ 
Sbjct: 572 TSSFPEGLQPYIMHVKDVAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWDEYAQ 631

Query: 242 LYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLR 301
           L+    RV+ELIH + +F++    D+WMTMPDMGH+IAS YN+V+ ++SM+ CLTFLPLR
Sbjct: 632 LFRDPIRVDELIHXLEHFQSPADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLR 691

Query: 302 SNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFCAKGWETIYNHRIQ 361
           S P P   R+ ++IGF+N+NHFVE+ +  G P+P VA +W +    CA+GW T Y   I 
Sbjct: 692 SAPTPLPMRRVLSIGFINDNHFVEILMTTGAPMPPVANSWSKSCYPCAEGWATPYAAYIN 751

Query: 362 HFKEIIGGDVATKEIIDVDNN 382
            F  ++  DVAT++ + +D++
Sbjct: 752 MFHGLVSNDVATQDTMHLDSD 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 186/405 (45%), Gaps = 40/405 (9%)

Query: 1   MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI 60
           + L E +   ++ +D  +CGC  R+++GLPCA EI     + +PI L+ I  HW +L + 
Sbjct: 543 IALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLSMG 602

Query: 61  RNHNKRK--VEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNT 118
              N+    VE+        I +R  +    MKL + + L ++A P TT +  P  K  T
Sbjct: 603 EQSNEDAFCVEVE----LKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPT 658

Query: 119 RGR------PNSKAN-ASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVY 171
           +G         SK    ST R PS++E+V S      P+     P+   +  K+ K    
Sbjct: 659 KGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGARL 713

Query: 172 KKNSLKSNPFVNEFPAA---------------LQSYIHHIKDVAPDGNCGFRAIADLMGF 216
            K SL   P    +P                 +  +I  + DV  DG+CGFRAIA+ MG 
Sbjct: 714 GKTSLSPLPPPTRYPKPKAIPVMRPIDYMPRFMVPFIEKVVDVIGDGHCGFRAIAEFMGL 773

Query: 217 GENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMP 272
            E   L +R  L+ EL  + + Y  ++   +R N +++ +    N        DKW+T P
Sbjct: 774 TEKNHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFP 833

Query: 273 DMGHLIASAYN---IVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLL 329
           DMGH++A+ Y    +V+ +L + +  +F PLR  P P + +  I       NHFV + L 
Sbjct: 834 DMGHIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPGNQKTPILCLGAIPNHFVLISLK 893

Query: 330 PGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATK 374
            G P+P ++  W       A  WE  Y  R   F++++  +   K
Sbjct: 894 NGCPLPPLSTEWHNHKKEDAVTWEDEYLDRHDLFRKLMAIESGNK 938

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87241356|gb|ABD33214.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 184/405 (45%), Gaps = 40/405 (9%)

Query: 1   MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI 60
           + L E +   ++ +D  +CGC  R+++GLPCA EI     + +PI L+ I  HW +L + 
Sbjct: 353 IALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLFQEKPILLDEIYHHWLRLSMG 412

Query: 61  RNHNKRK--VEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNT 118
              N+    VE+        I +R  +    MKL + + L ++A P TT +  P  K  T
Sbjct: 413 EQSNEDAFCVEVE----LKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPT 468

Query: 119 RGR------PNSKAN-ASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVY 171
           +G         SK    ST R PS++E+V S      P+     P+   +  K+ K    
Sbjct: 469 KGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGARL 523

Query: 172 KKNSLKSNPFVNEFPAA---------------LQSYIHHIKDVAPDGNCGFRAIADLMGF 216
            K SL   P    +P                 +  +I  + DV  DG+CGFRAIA+ MG 
Sbjct: 524 GKTSLSPLPPPTRYPKPKAIPVMRPIDYMPRFMLPFIEKVVDVIGDGHCGFRAIAEFMGL 583

Query: 217 GENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMP 272
            E   L +R  L+ EL  + + Y  ++   +R N +++ +    N        DKW+T  
Sbjct: 584 TEKNHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFS 643

Query: 273 DMGHLIASAYN---IVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLL 329
           DMGH++A+ Y    +V+ +L + +  +F PLR  P P + +  I       NHFV + L 
Sbjct: 644 DMGHIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPDNQKTPILCLGAIPNHFVLISLK 703

Query: 330 PGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATK 374
            G P+P  +  W       A  WE  Y  R   F++++  +   K
Sbjct: 704 NGCPLPPSSTEWHNHKKEDAVTWEDEYLDRHDLFRKLMAIESGNK 748

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489433|ref|XP_003615004.1| hypothetical protein MTR_5g062340 [Medicago truncatula] gi|355516339|gb|AES97962.1| hypothetical protein MTR_5g062340 [Medicago truncatula]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 178/392 (45%), Gaps = 40/392 (10%)

Query: 14  IDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRK--VEMS 71
           +D  +CGC  R+++GLP A EI     E +PI L+ I  HW +L +    N+    VE+ 
Sbjct: 1   MDNDICGCVQRTSYGLPSACEIATKLLEEKPILLDEIYHHWLRLSMGEESNEDAFCVEVE 60

Query: 72  YGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRGR------PNSK 125
                  I +R  +    MKL + + L ++A P TT +  P  K  T+G         SK
Sbjct: 61  ----LKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKFDIARSK 116

Query: 126 AN-ASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNE 184
               ST R PS++E+V S      P+     P+   +  K+ K     K SL   P    
Sbjct: 117 GKITSTSRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGTRLGKTSLSPLPPPTR 171

Query: 185 FPAA---------------LQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLL 229
           +P                 +  +I  + DV  DG+CGFRAIA+ MG  E   L +R  L+
Sbjct: 172 YPKPKAIPVMRPIDYMPHFMLPFIEKVMDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLI 231

Query: 230 NELHLNMEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMPDMGHLIASAYNIV 285
            EL  + + Y  ++   +R N +++ +    N        DKW+T P+MGH++A+ Y + 
Sbjct: 232 QELIDHKDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFPEMGHIVANYYKMC 291

Query: 286 VFHLS---MKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQ 342
           V  L+   +    +F PLR  P P + +  I       NHFV ++L  G P+P  + +W 
Sbjct: 292 VVMLTNLEVGNSESFFPLRGPPPPGNQKTPILCLGAIPNHFVFIYLKNGCPLPPSSTDWH 351

Query: 343 RFHSFCAKGWETIYNHRIQHFKEIIGGDVATK 374
                    WE  Y  + + F++++  +   K
Sbjct: 352 NHKKEDTVTWEDEYLDQHELFRKLMAIESGNK 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438051|ref|XP_003589301.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355478349|gb|AES59552.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 178/387 (45%), Gaps = 40/387 (10%)

Query: 1   MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI 60
           + L E++   ++ +D  +CGC  R+++GLPCA EI     + +PI L+ I  HW +L + 
Sbjct: 548 IALEETRCRETLCMDNDICGCAQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLYMG 607

Query: 61  RNHNKRK--VEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNT 118
              N+    VE+    I + + K   +    MKL + + L ++A P TT +  P  K  T
Sbjct: 608 EESNEVAFCVEVELKAIVECLKKLPFQ----MKLEVKEGLRQLAFPETTLMSPPPRKVPT 663

Query: 119 RGR------PNSKAN-ASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVY 171
           +G         SK    ST R PS++E+V S      P+     P+   +  K+ K    
Sbjct: 664 KGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGARL 718

Query: 172 KKNSLKSNPFVNEFPAA---------------LQSYIHHIKDVAPDGNCGFRAIADLMGF 216
            K SL   P    +P                 +  +I  + DV  DG+CGFRAIA+ MG 
Sbjct: 719 GKTSLSPLPPPTRYPKPKAIPVMRPIDYMTRFMLPFIEKVVDVIGDGHCGFRAIAEFMGL 778

Query: 217 GENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMP 272
            E   L +R  L+ EL  + + Y  ++   +R N +++ +    N        DKW+T P
Sbjct: 779 TEKNHLMIRTHLIQELIDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFP 838

Query: 273 DMGHLIASAYN---IVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLL 329
           DMGH++A+ Y    +V+ +L + +  +  PLR  P+P + +  I       NHF  + L 
Sbjct: 839 DMGHIVANYYKMCVVVLTNLEVGKSESLFPLRGPPLPGNQKTLILCIGAIPNHFALISLK 898

Query: 330 PGHPIPHVAINWQRFHSFCAKGWETIY 356
            G P+P  +  W       A  WE  Y
Sbjct: 899 NGCPLPPSSTEWHNHKKEDAVTWEDEY 925

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361025|gb|ABN08997.1| Ovarian tumour, otubain, putative [Medicago truncatula]

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 182/405 (44%), Gaps = 40/405 (9%)

Query: 1    MVLSESKNTNSIGIDVSVCGCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLI 60
            + L E +   ++ +D  + GC  R+++GLPCA EI     + +PI L+ I  HW +L + 
Sbjct: 621  IALEEKRCRETLCMDNDIYGCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLSMG 680

Query: 61   RNHNKRK--VEMSYGPIFDLIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNT 118
               NK    VE+        I +R  +    MKL + + L ++A P TT +  P  K  T
Sbjct: 681  EQSNKDAFCVEVE----LKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPT 736

Query: 119  RGR------PNSKAN-ASTCRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVY 171
            +G         SK    ST R PS++E+V S      P+     P+   +  K+ K    
Sbjct: 737  KGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGARL 791

Query: 172  KKNSLKSNPFVNEFPAA---------------LQSYIHHIKDVAPDGNCGFRAIADLMGF 216
             K SL   P    +P                 +  +I  +  V  DG+CGF AIA+ MG 
Sbjct: 792  GKTSLSPLPPPTRYPKPKAIPVMRPIDYMPRFMLPFIEKVVHVIGDGHCGFWAIAEFMGL 851

Query: 217  GENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMP 272
             E   L +R  L+ EL  + + Y  ++   +R N +++ +    N        DKW+T P
Sbjct: 852  TEKNHLMIRTHLIQELMDHRDDYVEVFAGEDRYNYILNGLHPPANTKTCAHLVDKWLTFP 911

Query: 273  DMGHLIASAYN---IVVFHLSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLL 329
            DMGH++A+ Y    +V+ +L + +  +F PLR  P P + +  I       NHFV + L 
Sbjct: 912  DMGHIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPGNQKTLILCLGAIPNHFVLISLK 971

Query: 330  PGHPIPHVAINWQRFHSFCAKGWETIYNHRIQHFKEIIGGDVATK 374
             G P+P  +  W       A  WE  Y  R   F++++  +   K
Sbjct: 972  NGCPLPPSSTEWHNHKKEDAVTWEDEYLDRHDLFRKLMAIESGNK 1016

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501471|ref|XP_003621024.1| hypothetical protein MTR_7g006230 [Medicago truncatula] gi|355496039|gb|AES77242.1| hypothetical protein MTR_7g006230 [Medicago truncatula]

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 174/386 (45%), Gaps = 40/386 (10%)

Query: 20  GCTIRSTHGLPCAHEIVEYKRESRPIPLECIDSHWKKLDLIRNHNKRK--VEMSYGPIFD 77
           GC  R+++GLPCA EI     + +PI L+ I  HW +L +    N+    VE+       
Sbjct: 7   GCVQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLSMGEESNEDAFCVEVE----LK 62

Query: 78  LIAKRFNENDDDMKLHILQKLAEIANPHTTSLIEPEAKKNTRGR------PNSKAN-AST 130
            I +R  +    MKL + + L ++A P TT +  P  K  T+G         SK    ST
Sbjct: 63  AIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITST 122

Query: 131 CRDPSAFEIVLSGKEICSPTVAFMRPAVKVNGNKQPKQKVYKKNSLKSNPFVNEFPAA-- 188
            R PS++E+V S      P+     P+   +  K+ K     K SL   P    +P    
Sbjct: 123 SRIPSSWEVVDSQNPDSQPS-----PSPTTSSYKRKKGARLGKTSLSPLPPPTRYPKPKA 177

Query: 189 -------------LQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLN 235
                        +  +I  + DV  DG+CGFRAIA+ MG  E   L +R  L+ EL  +
Sbjct: 178 IPVMRPIDYMPRFMLPFIEKVVDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLIQELMDH 237

Query: 236 MEHYSHLYGTYERVNELIHAISYFENCPGS----DKWMTMPDMGHLIASAYN---IVVFH 288
            + Y  ++   +R N +++ +    N        DKW+T  DMGH++A+ Y    +V+ +
Sbjct: 238 RDDYVEVFAGEDRYNYILNGLHPPANTKTCAYLVDKWLTFSDMGHIVANYYKMCVVVLTN 297

Query: 289 LSMKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGHPIPHVAINWQRFHSFC 348
           L +    +F PLR  P P + +  I       NHFV + L  G P+P  +  W       
Sbjct: 298 LEVGNSESFFPLRGPPPPGNQKTPILCLGAIPNHFVLISLKNGCPLPPSSTEWHNHKKED 357

Query: 349 AKGWETIYNHRIQHFKEIIGGDVATK 374
           A  WE  Y  R + F++++  +   K
Sbjct: 358 AVTWEDEYLDRHELFRKLMAIESGNK 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.72
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.42
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	98.59
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.08
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	97.79
KOG3991	256	consensus Uncharacterized conserved protein [Funct	97.45
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	95.6
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	94.61
PF05412	108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	93.4
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	88.76

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.72  E-value=5.9e-18  Score=143.55  Aligned_cols=109  Identities=21%  Similarity=0.392  Sum_probs=85.6

Q ss_pred             CCCCCcchHHHHhHhc----CCchhHHHHHHHHHHHHH-HhhhhcccccCChhHHHHHHHHhccCCCCCCCCccccccch
Q 045719          200 APDGNCGFRAIADLMG----FGENGWLQVRKDLLNELH-LNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDM  274 (384)
Q Consensus       200 ~gDGnCgFRAiA~~Lg----~~ed~~~~VR~~li~el~-~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~kWl~~p~~  274 (384)
                      +|||||+|||||.+|+    .+++.|..||++++++|+ .+++.|..++.++        .+      ..++.|++.+++
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~--------~~------~~~~~Wg~~~el   66 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD--------KM------SKPGTWGGEIEL   66 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH--------HH------TSTTSHEEHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh--------hh------ccccccCcHHHH
Confidence            6999999999999999    999999999999999999 9999888887543        34      557899999976


Q ss_pred             hHHhhhhcceEEEEEccCcc--eecccCCCCCCCCCCCCeEEEEEec-----CCcc
Q 045719          275 GHLIASAYNIVVFHLSMKQC--LTFLPLRSNPVPTDSRKEIAIGFVN-----NNHF  323 (384)
Q Consensus       275 g~iiAn~ynrpVi~ls~~~s--~tffPl~~~P~~~~~~~pI~La~v~-----~nHF  323 (384)
                       +++|+.|+|+|++|+....  ..+.+..+.-+.....++|+|+|..     ++||
T Consensus        67 -~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   67 -QALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             -HHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             -HHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence             9999999999999886332  2333322200112236899999997     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.1e-13  Score=130.33  Aligned_cols=134  Identities=13%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             hhhhHHHHhhhhcccccCCCCCcchHHHHhHhcCCc---hhHHHHHHHHHHHHHHhhhhcccccCCh--------hHHHH
Q 045719          183 NEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGE---NGWLQVRKDLLNELHLNMEHYSHLYGTY--------ERVNE  251 (384)
Q Consensus       183 ~q~p~~l~~~i~~i~dV~gDGnCgFRAiA~~Lg~~e---d~~~~VR~~li~el~~~~~~Y~~~~~~~--------~~~~~  251 (384)
                      ..+-..|..-.+.++|++.||||.|+||++||.+..   -+-..+|++..++|..|.++|.+|+-++        .+|+.
T Consensus       148 ~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~  227 (302)
T KOG2606|consen  148 EKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDK  227 (302)
T ss_pred             HHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHH
Confidence            357788999999999999999999999999998763   4688999999999999999999986553        47999


Q ss_pred             HHHHhccCCCCCCCCccccccchhHHhhhhcceEEEEEccCcc-eecccCCCCCCCCCCCCeEEEEEe-----cCCcceE
Q 045719          252 LIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQC-LTFLPLRSNPVPTDSRKEIAIGFV-----NNNHFVE  325 (384)
Q Consensus       252 ~l~~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~s-~tffPl~~~P~~~~~~~pI~La~v-----~~nHFvs  325 (384)
                      |++.+      +.+..||+.++. ++++++|.+||.+|..+++ .+|-+-.+.      .+||+|+|+     -|.||+|
T Consensus       228 Yc~eI------~~t~~WGgelEL-~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS  294 (302)
T KOG2606|consen  228 YCREI------RNTAAWGGELEL-KALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNS  294 (302)
T ss_pred             HHHHh------hhhccccchHHH-HHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcc
Confidence            99988      567899999975 8999999999999998655 555544431      478999986     2588988


Q ss_pred             eecC
Q 045719          326 VFLL  329 (384)
Q Consensus       326 l~lk  329 (384)
                      +..-
T Consensus       295 ~~~~  298 (302)
T KOG2606|consen  295 VTPL  298 (302)
T ss_pred             cccc
Confidence            8753

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3.4e-08  Score=99.80  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=101.8

Q ss_pred             hhhHHHHhhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCC
Q 045719          184 EFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCP  263 (384)
Q Consensus       184 q~p~~l~~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a  263 (384)
                      .....+..|+..+..|.+||+|.|||+|+++.++.|.|..+|++..++++.++++|..++..  .|..+++..      .
T Consensus       208 ~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~--~~~~y~k~k------r  279 (371)
T KOG2605|consen  208 RSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTE--DFTSYIKRK------R  279 (371)
T ss_pred             HHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhccccccccccc--chhhccccc------c
Confidence            34566788999999999999999999999999999999999999999999999999998875  477777755      3


Q ss_pred             CCCccccccchhHHhhh---hcceEEEEEccC-cc-eecccCCCCCCCCCCCCeEEEEEecCCcceEeecC
Q 045719          264 GSDKWMTMPDMGHLIAS---AYNIVVFHLSMK-QC-LTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLL  329 (384)
Q Consensus       264 ~~~kWl~~p~~g~iiAn---~ynrpVi~ls~~-~s-~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk  329 (384)
                      -.+.||++..+ |++|.   -..+|++..+.+ .| ....|-.     ..+...+++.||...||..+...
T Consensus       280 ~~~~~gnhie~-Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  280 ADGEPGNHIEQ-QAAADIYEEIEKPLNITSFKDTCYIQTPPAI-----EESVKMEKYNFWVEVHYNTARHS  344 (371)
T ss_pred             cCCCCcchHHH-hhhhhhhhhccccceeecccccceeccCccc-----ccchhhhhhcccchhhhhhcccc
Confidence            45799999865 89995   344555555432 33 2233222     22345699999989999988763

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.08  E-value=1.4e-05  Score=76.47  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=23.9

Q ss_pred             chhhhhHHHHhhhhcccccCCCCCcchHHHHhH
Q 045719          181 FVNEFPAALQSYIHHIKDVAPDGNCGFRAIADL  213 (384)
Q Consensus       181 ~~~q~p~~l~~~i~~i~dV~gDGnCgFRAiA~~  213 (384)
                      |..++ +.|......++.|.|||||.|||++-+
T Consensus        29 ~~~ki-~~L~~~y~~~R~vRGDGNCFYRAf~F~   60 (244)
T PF10275_consen   29 FQKKI-KKLSQKYSGIRRVRGDGNCFYRAFGFS   60 (244)
T ss_dssp             HHHHH-HHHHHHEEEEE-B-SSSTHHHHHHHHH
T ss_pred             HHHHH-HHHHhhhhheEeecCCccHHHHHHHHH
Confidence            33444 667777889999999999999999877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=4.2e-05  Score=73.17  Aligned_cols=121  Identities=14%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             hhcccccCCCCCcchHHHHhHhcCCchhH-HHHHHHHHHHHHHhhhhcccccCCh--hHHHHHHHHhccCCCCCCCCccc
Q 045719          193 IHHIKDVAPDGNCGFRAIADLMGFGENGW-LQVRKDLLNELHLNMEHYSHLYGTY--ERVNELIHAISYFENCPGSDKWM  269 (384)
Q Consensus       193 i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~-~~VR~~li~el~~~~~~Y~~~~~~~--~~~~~~l~~L~~~~~~a~~~kWl  269 (384)
                      |+..+=|+.|--|+|+||+.-+....+.- .++|+-+.+|+-++++.|..-+-+.  ..|..++.+         .+.|+
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k---------~dsWG  179 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILK---------MDSWG  179 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcc---------ccccC
Confidence            33445689999999999988775543222 6899999999999999999764442  355555543         57999


Q ss_pred             cccchhHHhhhhcceEEEEEccCc--ceecccCCCCCCCCCCCCeEEEEEecCCcceEeecCC
Q 045719          270 TMPDMGHLIASAYNIVVFHLSMKQ--CLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLP  330 (384)
Q Consensus       270 ~~p~~g~iiAn~ynrpVi~ls~~~--s~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~  330 (384)
                      +-.+. -||++.|++-|++++...  +..|-+-.      ....-++|-| +|-||.+|.+..
T Consensus       180 GaIEl-sILS~~ygveI~vvDiqt~rid~fged~------~~~~rv~lly-dGIHYD~l~m~~  234 (307)
T KOG3288|consen  180 GAIEL-SILSDYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLY-DGIHYDPLAMNE  234 (307)
T ss_pred             ceEEe-eeehhhhceeEEEEecceeeehhcCCCC------CCCceEEEEe-cccccChhhhcc
Confidence            99876 599999999999999753  34455321      1245667777 599999999854

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.0007  Score=64.08  Aligned_cols=87  Identities=17%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             HHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCccccccchhH--Hhhhhcce--EEEEEccCcceecccCCCCCCC
Q 045719          231 ELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGH--LIASAYNI--VVFHLSMKQCLTFLPLRSNPVP  306 (384)
Q Consensus       231 el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~kWl~~p~~g~--iiAn~ynr--pVi~ls~~~s~tffPl~~~P~~  306 (384)
                      +|+++.++|.+++.++..+++++..-  ++.+   .+   -.++.+  +|+++.++  -|.+++-+..-++.+..-| . 
T Consensus       166 ~ik~~adfy~pFI~e~~tV~~fC~~e--VEPm---~k---esdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp-e-  235 (256)
T KOG3991|consen  166 FIKSNADFYQPFIDEGMTVKAFCTQE--VEPM---YK---ESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP-E-  235 (256)
T ss_pred             HHhhChhhhhccCCCCCcHHHHHHhh--cchh---hh---ccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc-c-
Confidence            47788899999988877888888752  2211   11   123334  47788884  5667765444455544332 1 


Q ss_pred             CCCCCeEEEEEecCCcceEeecC
Q 045719          307 TDSRKEIAIGFVNNNHFVEVFLL  329 (384)
Q Consensus       307 ~~~~~pI~La~v~~nHFvsl~lk  329 (384)
                       -+.|-|.|.|- +-||..|+.+
T Consensus       236 -~s~P~I~LLYr-pGHYdilY~~  256 (256)
T KOG3991|consen  236 -ASAPEIYLLYR-PGHYDILYKK  256 (256)
T ss_pred             -ccCceEEEEec-CCccccccCC
Confidence             23678999996 7999988753

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.012  Score=57.53  Aligned_cols=117  Identities=9%  Similarity=-0.095  Sum_probs=71.4

Q ss_pred             CCCCCchhhhhHHHHhhhhcccccCCCCCcchHHHHhHhcCCc-----hhHHHHHHHHHHHHHHhhhhcccccCCh----
Q 045719          176 LKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGE-----NGWLQVRKDLLNELHLNMEHYSHLYGTY----  246 (384)
Q Consensus       176 ~~~~p~~~q~p~~l~~~i~~i~dV~gDGnCgFRAiA~~Lg~~e-----d~~~~VR~~li~el~~~~~~Y~~~~~~~----  246 (384)
                      ..-.+++-.+|.....--..-.|..|||||.|-+|+++|+..-     +.=...|..=......+...|.++.-++    
T Consensus       153 Dl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~  232 (306)
T COG5539         153 DLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA  232 (306)
T ss_pred             cccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh
Confidence            3334455555555555455557889999999999999998741     1112222222223333445555542222    


Q ss_pred             -hHHHHHHHHhccCCCCCCCCccccccchhHHhhhhcceEEEEEccC-cceeccc
Q 045719          247 -ERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMK-QCLTFLP  299 (384)
Q Consensus       247 -~~~~~~l~~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~-~s~tffP  299 (384)
                       ..|+.+.+.+      -....|+..+. .+.||+.+..|+-++... .++-|-+
T Consensus       233 m~~~dt~~ne~------~~~a~~g~~~e-i~qLas~lk~~~~~~nT~~~~ik~n~  280 (306)
T COG5539         233 MVLWDTYVNEV------LFDASDGITIE-IQQLASLLKNPHYYTNTASPSIKCNI  280 (306)
T ss_pred             cchHHHHHhhh------cccccccchHH-HHHHHHHhcCceEEeecCCceEEeec
Confidence             2467777766      34679987664 488999999999888754 3444443

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=94.61  E-value=0.025  Score=36.44  Aligned_cols=25  Identities=24%  Similarity=0.632  Sum_probs=21.8

Q ss_pred             ccCceeecccccchhHHHHHHHhcC
Q 045719           18 VCGCTIRSTHGLPCAHEIVEYKRES   42 (384)
Q Consensus        18 ~C~~~~~~~~GlPCah~l~~~l~~~   42 (384)
                      .|+|-.....||||+|-|+.+...|
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~   26 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIG   26 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhC
Confidence            6899888999999999999887654

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.40  E-value=0.13  Score=43.50  Aligned_cols=63  Identities=22%  Similarity=0.342  Sum_probs=39.8

Q ss_pred             ccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCccccccchhHH
Q 045719          198 DVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHL  277 (384)
Q Consensus       198 dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~kWl~~p~~g~i  277 (384)
                      .+++||+||+|+||.-+..               |          ++++  |..   .  ++.-..+.+.|++--+++++
T Consensus         3 sPP~DG~CG~H~i~aI~n~---------------m----------~~~~--~t~---~--l~~~~r~~d~W~~dedl~~~   50 (108)
T PF05412_consen    3 SPPGDGSCGWHCIAAIMNH---------------M----------MGGE--FTT---P--LPQRNRPSDDWADDEDLYQV   50 (108)
T ss_pred             CCCCCCchHHHHHHHHHHH---------------h----------hccC--CCc---c--ccccCCChHHccChHHHHHH
Confidence            5799999999999876532               1          2211  000   0  11123467899999999999


Q ss_pred             hhhhcceEEEEEccCc
Q 045719          278 IASAYNIVVFHLSMKQ  293 (384)
Q Consensus       278 iAn~ynrpVi~ls~~~  293 (384)
                      |-.. +.|+-+-..+.
T Consensus        51 iq~l-~lPat~~~~~~   65 (108)
T PF05412_consen   51 IQSL-RLPATLDRNGA   65 (108)
T ss_pred             HHHc-cCceeccCCCC
Confidence            8766 77776544433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.76  E-value=0.28  Score=33.63  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=24.1

Q ss_pred             CCCCCccCceeecccccchhHHHHHHHh
Q 045719           13 GIDVSVCGCTIRSTHGLPCAHEIVEYKR   40 (384)
Q Consensus        13 ~~~~~~C~~~~~~~~GlPCah~l~~~l~   40 (384)
                      +.+...|+|......|.||.|.+|.++.
T Consensus        11 ~~~~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   11 SIEQASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             cccccEeeCCCccccCCcchhHHHHHHh
Confidence            4457899999888899999999998874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-07
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	9e-06
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-05
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-05

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 189 LQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYER 248
                  IK +  DG C FRA+AD +   ++    VRK  ++ L  N +++S+       
Sbjct: 54  RDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFT 113

Query: 249 VNELIHAISYFENCPGSDKWMTMPDMGHLIASAY--NIVVFHLSMKQCLTFLPLRSNPVP 306
                   +Y      ++      +M   +A  Y   + V+  S +   TF     + + 
Sbjct: 114 --------TYINRKRKNNCHGNHIEM-QAMAEMYNRPVEVYQYSTEPINTF-----HGIH 159

Query: 307 TDSRKEIAIGFVNNNHF 323
            +  + I + +  N H+
Sbjct: 160 QNEDEPIRVSYHRNIHY 176

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 13/160 (8%)

Query: 174 NSLKSNPFVNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWL-QVRKDLLNEL 232
             + +  +V+     +  Y   I     DGNC + +IA+L    +        K L    
Sbjct: 12  TQVIAGQYVSNPRFNISDYFE-IVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESA 70

Query: 233 HLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMPDMGHLIASAYN--IVVFHLS 290
                             E      Y +     ++W +  +   L A      I+++ ++
Sbjct: 71  ARKYYQEEPEARLVGLSLE-----DYLKRMLSDNEWGSTLEASML-AKEMGITIIIWTVA 124

Query: 291 MKQCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLP 330
               +            D    + +      HF  + +LP
Sbjct: 125 ASDEVEA---GIKFGDGDVFTAVNLLHSGQTHFDALRILP 161

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 12/138 (8%)

Query: 196 IKDVAPDGNCGFRAIADLMGFGENG-WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH 254
           I     DGNC + +IA+L    +        K L                      E   
Sbjct: 33  IVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLE--- 89

Query: 255 AISYFENCPGSDKWMTMPDMGHLIASAY--NIVVFHLSMKQCLTFLPLRSNPVPTDSRKE 312
              Y +     ++W +  +   ++A      I+++ ++    +            D    
Sbjct: 90  --DYLKRMLSDNEWGSTLEA-SMLAKEMGITIIIWTVAASDEVEAG---IKFGDGDVFTA 143

Query: 313 IAIGFVNNNHFVEVFLLP 330
           + +      HF  + +LP
Sbjct: 144 VNLLHSGQTHFDALRILP 161

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 31/150 (20%)

Query: 196 IKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHA 255
           +  V  D +C F AIA  + F ++    +R+ +  E+  N   ++          + I  
Sbjct: 22  VHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFN----------DAILD 70

Query: 256 ISYFENCPGSDKWMTMPDM--GHL----IASAYN--IVVFHLSMKQCLTFLPLRSNPVPT 307
               +      +W+   +   G +    I+ A    I V  +   +   F          
Sbjct: 71  KPNKDYA----QWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKF--------NE 118

Query: 308 DSRKEIAIGFVNNNHFVEVFLLPGHPIPHV 337
           D      +   N  H+  + +     + + 
Sbjct: 119 DKFDNYILILFNGIHYDSLTMNEFKTVFNK 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.85
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.8
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.69
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.69
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.44
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.02
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.99
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	98.77
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.71
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.54
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	95.14

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.85  E-value=2.5e-21  Score=176.76  Aligned_cols=132  Identities=21%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             hhhHHH-HhhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCC
Q 045719          184 EFPAAL-QSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENC  262 (384)
Q Consensus       184 q~p~~l-~~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~  262 (384)
                      ++-+.| +..++.+++|+|||||+|||||++|..+++.|..||+.++++|++++++|.+++.+  .|++|++.|      
T Consensus        48 ~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m------  119 (185)
T 3pfy_A           48 WFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINRK------  119 (185)
T ss_dssp             HHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------
T ss_pred             HHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHh------
Confidence            344555 68899999999999999999999999999999999999999999999999999864  699999987      


Q ss_pred             CCCCccccccchhHHhhhhcceEEEEEccCc-ceecccCCCCCCCCCCCCeEEEEEecCCcceEeec
Q 045719          263 PGSDKWMTMPDMGHLIASAYNIVVFHLSMKQ-CLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFL  328 (384)
Q Consensus       263 a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~-s~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~l  328 (384)
                      ..++.|++.++ .+++|..|+++|++++.+. ...+|+-..    ....++|+|+|++++||+||.-
T Consensus       120 ~~~~~WGg~iE-L~AlS~~~~v~I~V~~~~~~~i~i~~g~~----~~~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          120 RKNNCHGNHIE-MQAMAEMYNRPVEVYQYSTEPINTFHGIH----QNEDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             ------CCHHH-HHHHHHHHTSCEEEESSCSSCSEEECTTS----CCTTSCEEEEEETTTEEEEEEC
T ss_pred             hCCCccchHHH-HHHHHHhhCCcEEEEECCCCCeEEecCcc----CCCCCEEEEEECCCCCcccccC
Confidence            45789999985 5999999999999998754 244443211    1236899999999999999974

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.80  E-value=4.7e-20  Score=171.69  Aligned_cols=120  Identities=16%  Similarity=0.201  Sum_probs=101.7

Q ss_pred             hhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCcccccc
Q 045719          193 IHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMP  272 (384)
Q Consensus       193 i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~kWl~~p  272 (384)
                      ++.+++|+|||||+|||||+|| .+++.|..||+.++++|++|+++|.++|.+ ..|++|++.|      ..++.|++.+
T Consensus        19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m------~~~~~WGg~i   90 (212)
T 3by4_A           19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWI------LKMESWGGAI   90 (212)
T ss_dssp             EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHT------TSTTSCCCHH
T ss_pred             CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHh------cCCCEEccHH
Confidence            6788999999999999999999 789999999999999999999999865543 5799999998      5578999998


Q ss_pred             chhHHhhhhcceEEEEEccC-cceecccCCCCCCCCCCCCeEEEEEecCCcceEeec
Q 045719          273 DMGHLIASAYNIVVFHLSMK-QCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFL  328 (384)
Q Consensus       273 ~~g~iiAn~ynrpVi~ls~~-~s~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~l  328 (384)
                      + .+++|..|+++|++++.. .....|+-    ..  ..++|+|+|. ++||.+|++
T Consensus        91 E-L~Als~~~~~~I~V~~~~~~~~~~~~~----~~--~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A           91 E-IGIISDALAVAIYVVDIDAVKIEKFNE----DK--FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             H-HHHHHHHHTCEEEEEETTTTEEEEEST----TT--CSEEEEEEEC-SSCEEEEEE
T ss_pred             H-HHHHHHHHCCCEEEEECCCCCeEEeCC----CC--CCCeEEEEEc-CCcceEEec
Confidence            5 599999999999999864 33334421    11  2679999997 899999999

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.69  E-value=1.6e-17  Score=151.61  Aligned_cols=119  Identities=15%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             hcccccCCCCCcchHHHHhHhcCC-chh-----HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCc
Q 045719          194 HHIKDVAPDGNCGFRAIADLMGFG-ENG-----WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDK  267 (384)
Q Consensus       194 ~~i~dV~gDGnCgFRAiA~~Lg~~-ed~-----~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~k  267 (384)
                      ..++.|+|||||.|||||+||+.+ ++.     |..||+.++++|++|++++  +.  +..|++|++.+      ..++.
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~--~~--~~~~~~Y~~~m------~~~~~  100 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRM------LSDNE  100 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHH--HH--CCCHHHHHHHH------TSTTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhh--hc--CCCHHHHHHHh------hCCCc
Confidence            456778999999999999999988 666     9999999999999999882  22  34799999998      56789


Q ss_pred             cccccchhHHhhhhcceEEEEEccCcc------eecccCCCCCCCCCCCCeEEEEEecCCcceEeecCC
Q 045719          268 WMTMPDMGHLIASAYNIVVFHLSMKQC------LTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLP  330 (384)
Q Consensus       268 Wl~~p~~g~iiAn~ynrpVi~ls~~~s------~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~  330 (384)
                      |++..+ ..++|..|+++|++++.+..      ..|-     +..  ..++|+|+|..++||.+|....
T Consensus       101 WGg~iE-L~Als~~~~v~I~V~~~d~~~~~~~i~~f~-----~~~--~~~~I~L~Y~g~~HYdsl~~~~  161 (185)
T 3phx_A          101 WGSTLE-ASMLAKEMGITIIIWTVAASDEVEAGIKFG-----DGD--VFTAVNLLHSGQTHFDALRILP  161 (185)
T ss_dssp             CCBHHH-HHHHHHHHCCCEEEEEC--CCBCCEEEEES-----SCC--TTTSEEEEEETTTEEEEEEECG
T ss_pred             cCcHHH-HHHHHHHHCCcEEEEEecCCCCceEEEEcC-----CCC--CCCEEEEEECCCcCchhceECC
Confidence            999985 58999999999998875322      2221     211  2689999998669999999853

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.69  E-value=3.4e-17  Score=152.97  Aligned_cols=149  Identities=11%  Similarity=0.142  Sum_probs=101.5

Q ss_pred             hcccccCCCCCcchHHHHhHhcCC-chh-----HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCc
Q 045719          194 HHIKDVAPDGNCGFRAIADLMGFG-ENG-----WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDK  267 (384)
Q Consensus       194 ~~i~dV~gDGnCgFRAiA~~Lg~~-ed~-----~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~k  267 (384)
                      ..|+.|+|||||.|||||+||+.+ ++.     |..||+.++++|++|++++  ++  +..|++|++.+      ..++.
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~--~~~feeY~~~m------~~~g~  100 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRM------LSDNE  100 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HH--CCCHHHHHHHH------HSTTC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hc--CCCHHHHHHHh------cCCCc
Confidence            567788999999999999999988 566     9999999999999999882  22  34699999998      45689


Q ss_pred             cccccchhHHhhhhcceEEEEEccCcc---eecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCC-C--CCCCCcchh
Q 045719          268 WMTMPDMGHLIASAYNIVVFHLSMKQC---LTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPG-H--PIPHVAINW  341 (384)
Q Consensus       268 Wl~~p~~g~iiAn~ynrpVi~ls~~~s---~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~-~--piP~~~~~W  341 (384)
                      |++..+ ..++|..|+++|++++.+..   .... .++ +..  ..++|+|+|.+++||.+|....+ .  +.+|.+..=
T Consensus       101 WGG~iE-L~AlS~~~~v~I~V~~~d~~g~~~~i~-~fg-e~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~l~~  175 (219)
T 3phu_A          101 WGSTLE-ASMLAKEMGITIIIWTVAASDEVEAGI-KFG-DGD--VFTAVNLLHSGQTHFDALRILPQFETDTREALSLMD  175 (219)
T ss_dssp             CCCHHH-HHHHHHHTTCCEEEEEESSSSBEEEEE-EES-SCC--TTTSEEEEEETTTEEEEEEECTTTCCSCCCCCCHHH
T ss_pred             cCCHHH-HHHHHHHhCCCEEEEEecCCCCceeEE-Eec-CCC--CCCeEEEEECCCcCchhheECCCCCCCCCcchhHHH
Confidence            999985 58999999999998864322   1111 112 221  26899999986799999998643 3  233333321


Q ss_pred             hhhc--cccccCchHHHH
Q 045719          342 QRFH--SFCAKGWETIYN  357 (384)
Q Consensus       342 ~~~~--~~~A~~W~~~~~  357 (384)
                      +.-.  .--+.+|++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~  193 (219)
T 3phu_A          176 RVIAVDQLTSSSSDELQD  193 (219)
T ss_dssp             HHHHHHHHHC--------
T ss_pred             HHHHHHHHHhccHHhhhh
Confidence            2111  233567766554

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.44  E-value=3.9e-13  Score=126.76  Aligned_cols=132  Identities=12%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             HHhhhhcccccCCCCCcchHHHH----------------------------hHhcCCch---------------------
Q 045719          189 LQSYIHHIKDVAPDGNCGFRAIA----------------------------DLMGFGEN---------------------  219 (384)
Q Consensus       189 l~~~i~~i~dV~gDGnCgFRAiA----------------------------~~Lg~~ed---------------------  219 (384)
                      |..--..++.|.|||||+|||++                            .++|.++.                     
T Consensus        35 L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edF~~~f~~ll~~i~~~~~  114 (234)
T 1tff_A           35 LSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGS  114 (234)
T ss_dssp             HHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHhhhheeecCCCccHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence            33445678999999999999999                            24565533                     


Q ss_pred             ----------------hHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhc
Q 045719          220 ----------------GWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAY  282 (384)
Q Consensus       220 ----------------~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~y  282 (384)
                                      .-..+|.....+|++|+++|.+++.++..+++++. .+      .+.++|++...+ .+||+++
T Consensus       115 ~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~v------e~~~~~~~~iei-~ALa~aL  187 (234)
T 1tff_A          115 VSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQI-TALSQAL  187 (234)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHH
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHh------hhhhcccccHHH-HHHHHHh
Confidence                            12346777788999999999999977668999998 55      467899999865 8999999


Q ss_pred             ceEEEEEccCcce-ecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCC
Q 045719          283 NIVVFHLSMKQCL-TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPG  331 (384)
Q Consensus       283 nrpVi~ls~~~s~-tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~  331 (384)
                      +++|.++..+.+. .+-+... |+.  ..+.|+|+|. +.||.+|+.+++
T Consensus       188 ~v~I~V~~~d~~~~~~~~~~~-~~~--~~~~I~LlY~-pgHYdily~~~~  233 (234)
T 1tff_A          188 SIALQVEYVDEMDTALNHHVF-PEA--ATPSVYLLYK-TSHYNILYAADK  233 (234)
T ss_dssp             TCCEEEEECC-------CCCC-CCC--SSCSEEEEEE-TTEEEEEEECCC
T ss_pred             CCCEEEEEcCCCCCccccccC-CCC--CCCeEEEEEC-CCCceecccCCC
Confidence            9999888765443 2222222 222  2577999998 569999998754

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.02  E-value=8.7e-10  Score=106.33  Aligned_cols=97  Identities=15%  Similarity=0.054  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhcceEEEEEccCcc-------e
Q 045719          224 VRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQC-------L  295 (384)
Q Consensus       224 VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~s-------~  295 (384)
                      +|.....+|+.|+++|.+|+.+...+++|+. .+      .+.++|++...+ .+||++++++|-+.-.+.+       .
T Consensus       173 LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eV------e~~~~e~d~leI-~ALa~aL~v~I~V~ylDrs~g~~v~~h  245 (284)
T 4dhi_B          173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEI------EPMWKDADHLAI-NSLIKAAGTRVRIEYMDRTAAPNGGWH  245 (284)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHTTCCEEEEESSGGGCTTSSSE
T ss_pred             HHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhc------eehhhcccHHHH-HHHHHHhCCcEEEEEecCCCCCCCccc
Confidence            4555666788999999999977667999998 55      467899999854 8999999998866543221       2


Q ss_pred             ecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCCC
Q 045719          296 TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGH  332 (384)
Q Consensus       296 tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~~  332 (384)
                      ..||-...    +..+.|.|.|. +.||..|+.++..
T Consensus       246 ~~fp~~~~----~~~p~I~LLYr-pgHYDILY~~~p~  277 (284)
T 4dhi_B          246 YDIPSDDQ----QIAPEITLLYR-PGHYDVIYKKDST  277 (284)
T ss_dssp             EEESCCCS----CCCCSEEEEEE-TTEEEEEEECC--
T ss_pred             ccCCCCCC----CCCCEEEEeec-CCCccccccCCCC
Confidence            21454321    12467999997 7899999988743

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.99  E-value=1e-09  Score=110.74  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhcceEEEEEccCc--ceec
Q 045719          221 WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQ--CLTF  297 (384)
Q Consensus       221 ~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~--s~tf  297 (384)
                      ...+|.....+|++|.++|.+++.+...+++++. .+      -+.++|.+...+ .+||+++|++|.++-.+.  ....
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~v------e~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~~v  372 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTT  372 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHT------SSTTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSSCC
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhc------eeHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCCcc
Confidence            3446666778899999999999977667999998 54      467899999865 899999999887653222  1122


Q ss_pred             ccCCCCCCCCCCCCeEEEEEecCCcceEee
Q 045719          298 LPLRSNPVPTDSRKEIAIGFVNNNHFVEVF  327 (384)
Q Consensus       298 fPl~~~P~~~~~~~pI~La~v~~nHFvsl~  327 (384)
                      -+... |..  ..+.|+|.|. +.||..|+
T Consensus       373 ~~~~~-~~~--~~~~I~LLYr-PgHYDiLY  398 (399)
T 4ddg_A          373 NPHIF-PEG--SEPKVYLLYR-PGHYDILY  398 (399)
T ss_dssp             CEEET-TTT--CCCCCEEEEE-TBEEEEEE
T ss_pred             ceeeC-CCC--CCCEEEEEEc-CCccccCC
Confidence            12211 222  2578999996 78999987

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=98.77  E-value=9e-09  Score=96.85  Aligned_cols=124  Identities=13%  Similarity=0.077  Sum_probs=92.9

Q ss_pred             hhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccc
Q 045719          191 SYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWM  269 (384)
Q Consensus       191 ~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl  269 (384)
                      ..+.+|.+ ..||+|.++|+.+++ .+...-..+|.....+|+.|+++|.+++.++..+++++. .+      .++++|.
T Consensus       107 ~ll~~i~~-~~~~~~L~~~fndq~-~s~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~v------e~~~~~~  178 (234)
T 2zfy_A          107 DLIEQVEK-QTSVADLLASFNDQS-TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKES  178 (234)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHT------SSTTCCC
T ss_pred             HHHHHHHc-CCCHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHh------hhHhhcC
Confidence            34455544 349999999999996 345677889999999999999999999987678999997 45      4578999


Q ss_pred             cccchhHHhhhhcceEEEEEccCcce--ecccCCCCCCCCCCCCeEEEEEecCCcceEee
Q 045719          270 TMPDMGHLIASAYNIVVFHLSMKQCL--TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVF  327 (384)
Q Consensus       270 ~~p~~g~iiAn~ynrpVi~ls~~~s~--tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~  327 (384)
                      +...+ .+||++++++|.++..+.+.  ..-...- |+.  ..+.|+|+|. +.||.+|+
T Consensus       179 ~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~~~~f-~~~--~~p~I~LlY~-pgHYdiLy  233 (234)
T 2zfy_A          179 DHIHI-IALAQALSVSIQVEYMDRGEGGTTNPHIF-PEG--SEPKVYLLYR-PGHYDILY  233 (234)
T ss_dssp             CHHHH-HHHHHHHTCCEEEEECC-CCSSCCEEEEE-STT--CCCSEEEEEE-TTEEEEEE
T ss_pred             CHHHH-HHHHHHhCCCEEEEEcCCCCCCcccceeC-CCC--CCCeEEEEEC-CCCcccCC
Confidence            99855 89999999999887754332  1111111 111  2578999998 56999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.71  E-value=1.2e-07  Score=93.41  Aligned_cols=132  Identities=21%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             cccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhh--hhcc----------cc------cCC---hhHHHHHHHH
Q 045719          197 KDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM--EHYS----------HL------YGT---YERVNELIHA  255 (384)
Q Consensus       197 ~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~--~~Y~----------~~------~~~---~~~~~~~l~~  255 (384)
                      ....|||||+.+|++..|-.-.|.-..+|+.|..-|+...  .++.          .+      |..   ...++.+++.
T Consensus       115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~  194 (390)
T 3dkb_A          115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM  194 (390)
T ss_dssp             BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred             EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence            4568999999999999987778999999999998888632  1111          01      111   2567777776


Q ss_pred             hccCCCCCCCCcccccc--chhHHhhhhcceEEEEEcc--------C-------cceecccCCCCCCCCCCCCeEEEEEe
Q 045719          256 ISYFENCPGSDKWMTMP--DMGHLIASAYNIVVFHLSM--------K-------QCLTFLPLRSNPVPTDSRKEIAIGFV  318 (384)
Q Consensus       256 L~~~~~~a~~~kWl~~p--~~g~iiAn~ynrpVi~ls~--------~-------~s~tffPl~~~P~~~~~~~pI~La~v  318 (384)
                      ..........+.=+.-.  -|-+++|+..+||||+|+.        +       .+.+|+|+..+|..+. ..||+|||-
T Consensus       195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~-rsPI~LgY~  273 (390)
T 3dkb_A          195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECY-RYPIVLGYD  273 (390)
T ss_dssp             TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSC-SSCEEEEEC
T ss_pred             hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHcc-CCceEEEec
Confidence            52211112222212111  2778899999999999952        1       1468999999886663 569999997


Q ss_pred             cCCcceEeecCC
Q 045719          319 NNNHFVEVFLLP  330 (384)
Q Consensus       319 ~~nHFvsl~lk~  330 (384)
                       .+||.+|....
T Consensus       274 -s~HFsaLV~me  284 (390)
T 3dkb_A          274 -SHHFVPLVTLK  284 (390)
T ss_dssp             -SSCEEEEEEBC
T ss_pred             -cCceeeeeecc
Confidence             59999999854

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.54  E-value=2.3e-07  Score=92.78  Aligned_cols=125  Identities=17%  Similarity=0.152  Sum_probs=88.6

Q ss_pred             ccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhh-hhcccc----------cC-----Ch----hHHHHHHHHhc
Q 045719          198 DVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM-EHYSHL----------YG-----TY----ERVNELIHAIS  257 (384)
Q Consensus       198 dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~-~~Y~~~----------~~-----~~----~~~~~~l~~L~  257 (384)
                      ...|||||..+|++..|-.-.|....+|+.|...|++.. .+|...          ++     ++    ..++.++....
T Consensus       193 ~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As  272 (454)
T 3zrh_A          193 WNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLAS  272 (454)
T ss_dssp             CCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred             eecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhc
Confidence            458999999999999998889999999999999988621 222211          11     22    23444554331


Q ss_pred             cCCCCCCCCccccccchhHHhhhhcceEEEEEccC--------------cceecccCCCCCCCCCCCCeEEEEEecCCcc
Q 045719          258 YFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMK--------------QCLTFLPLRSNPVPTDSRKEIAIGFVNNNHF  323 (384)
Q Consensus       258 ~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~--------------~s~tffPl~~~P~~~~~~~pI~La~v~~nHF  323 (384)
                            +++.=|.. -|-+++|+..+||||+|+..              .+..|+|+.-+|.-+. ..||+|||- ..||
T Consensus       273 ------~Pg~sLEe-iHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~-rsPIvLgY~-~gHF  343 (454)
T 3zrh_A          273 ------QPGASLEQ-THIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCW-KSPIALGYT-RGHF  343 (454)
T ss_dssp             ------STTCCCCH-HHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSC-SCCEEEEEE-TTEE
T ss_pred             ------CCcchHHH-HHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhc-CCceEEEec-ccce
Confidence                  22221211 27788999999999999841              2358999999876553 579999997 5799


Q ss_pred             eEeecCCC
Q 045719          324 VEVFLLPG  331 (384)
Q Consensus       324 vsl~lk~~  331 (384)
                      .+|...++
T Consensus       344 saLV~~~~  351 (454)
T 3zrh_A          344 SALVAMEN  351 (454)
T ss_dssp             EEEEEBCC
T ss_pred             eeeeeccc
Confidence            99998654

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=95.14  E-value=0.012  Score=55.07  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=25.0

Q ss_pred             hhcccccCCCCCcchHHHHhH----hcCCchhHHHHHHH
Q 045719          193 IHHIKDVAPDGNCGFRAIADL----MGFGENGWLQVRKD  227 (384)
Q Consensus       193 i~~i~dV~gDGnCgFRAiA~~----Lg~~ed~~~~VR~~  227 (384)
                      -..++.|.|||||+|||++-+    |..+.+.+..+.+.
T Consensus        42 y~~~R~vRgDGNCFyRaf~f~ylE~ll~~~~e~~r~~~~   80 (234)
T 2zfy_A           42 YSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAV   80 (234)
T ss_dssp             CCEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccceeeccCCccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            347889999999999999854    45455555554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.25

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=113.49  Aligned_cols=97  Identities=8%  Similarity=0.078  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHhhhhcccccCChhHHHHHHHH-hccCCCCCCCCccccccchhHHhhhhcceEEEEEccCcceecccCCC
Q 045719          224 VRKDLLNELHLNMEHYSHLYGTYERVNELIHA-ISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQCLTFLPLRS  302 (384)
Q Consensus       224 VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~-L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~s~tffPl~~  302 (384)
                      +|......|+.+.++|.+++.+...+++++.. +      .+.+.|++...+ .|+|.+|+++|.++..+....-++...
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v------~~~~~e~d~ieI-~aLa~al~v~I~V~~~d~~~~~~~~~~  201 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQI-TALSQALSIALQVEYVDEMDTALNHHV  201 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHHTCCEEEEECC-------CCC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHH------ccccccCCcHHH-HHHHHHhCCCEEEEEecCCCCcccccc
Confidence            58888889999999999999877778888764 5      456899999865 899999999998886643322222222


Q ss_pred             CCCCCCCCCeEEEEEecCCcceEeecCC
Q 045719          303 NPVPTDSRKEIAIGFVNNNHFVEVFLLP  330 (384)
Q Consensus       303 ~P~~~~~~~pI~La~v~~nHFvsl~lk~  330 (384)
                      -|.  ..++.|.|.|. +.||+.|+..+
T Consensus       202 ~~~--~~~~~I~Lly~-pgHYdiLY~~~  226 (228)
T d1tffa_         202 FPE--AATPSVYLLYK-TSHYNILYAAD  226 (228)
T ss_dssp             CCC--CSSCSEEEEEE-TTEEEEEEECC
T ss_pred             CCC--CCCCEEEEEeC-CCCcccCccCC
Confidence            232  23678999996 68999998754