Citrus Sinensis ID: 045720
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | yes | no | 0.969 | 0.953 | 0.416 | 1e-155 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.965 | 0.927 | 0.420 | 1e-153 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.910 | 0.927 | 0.373 | 1e-120 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.931 | 0.926 | 0.369 | 1e-116 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.578 | 0.534 | 0.279 | 1e-30 | |
| P11018 | 319 | Major intracellular serin | no | no | 0.224 | 0.523 | 0.300 | 4e-13 | |
| P06873 | 384 | Proteinase K OS=Tritirach | N/A | no | 0.273 | 0.531 | 0.286 | 8e-10 | |
| P29139 | 326 | Intracellular serine prot | no | no | 0.213 | 0.487 | 0.292 | 1e-09 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.617 | 0.241 | 0.239 | 3e-09 | |
| Q69F35 | 399 | Subtilisin-like protease | N/A | no | 0.216 | 0.403 | 0.307 | 6e-09 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 324/778 (41%), Positives = 455/778 (58%), Gaps = 56/778 (7%)
Query: 1 MSGEMLNTGAVLVSLVFIIINFSPAIIAVRASNESDKDGLQTYIIYV---QKPEQGDLDS 57
MS L++ A + L + S S+ SD+ TYI+++ Q P DL S
Sbjct: 1 MSSSFLSSTAFFLLLCLGFCHVS--------SSSSDQG---TYIVHMAKSQMPSSFDLHS 49
Query: 58 -WYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARV 116
WY S L +IS+S++ +LY Y+N I GF+ RLT EE ++ T+ G IS
Sbjct: 50 NWYDSSL--RSISDSAE--------LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLP 99
Query: 117 ENTLHLHTTHTPNFLGL-HRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPA 175
E+ LHTT TP FLGL ++ + ++ V++GVLDTG+ P S++DEG P P+
Sbjct: 100 EHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPS 159
Query: 176 KWRGKCE----LVGATCNNKLIGVRNFFCGKDG------------SAIDYTGHGTHTAST 219
W+G CE + CN KLIG R F G + S D GHGTHT+ST
Sbjct: 160 SWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSST 219
Query: 220 AAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVL 279
AAG+ V GA++ G A+GTA GMAP A +AVYKVC C S ++A ID AI D V+VL
Sbjct: 220 AAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVL 278
Query: 280 SLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTID 339
S+S G G+S +Y +G+A F A+ RGI VS +AGN+GP+ +L N APW+ TVGA T+D
Sbjct: 279 SMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLD 338
Query: 340 RGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP-DARNHSTTTFCSPETLKSVDVKG 398
R LGN + + G +L++ +P K LP +Y +A N + C TL VKG
Sbjct: 339 RDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKG 398
Query: 399 KVVLCQRG-----ASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIK 453
K+V+C RG GD V AGG MIL N G+ + + LP V + I+
Sbjct: 399 KIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIR 458
Query: 454 AYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWK 513
Y+ + +PTA++ + GTV+G +P V AFS RGP+ I+P ILKPD+I PG+NI+AAW
Sbjct: 459 HYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWT 518
Query: 514 TTVDPLA----NRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTV 569
P +R F+I+SGTSM+CPH+SG+AALLKS HP WS AAI+SA+MTTA
Sbjct: 519 GAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKT 578
Query: 570 NLEGKPILD-CTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQ 628
+GKP+LD T P+ + GAG V+P+ A +PGL+YD+ +DY+ +LC LNYT Q++
Sbjct: 579 YKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIR 638
Query: 629 SIVDREVQCAKVSSIPEAELNYPSFSIKL-GYSPQTYHRTVTNVGKAKSFYTRQMVAPEG 687
S+ R C S A+LNYPSF++ + G Y RTVT+VG A ++ + G
Sbjct: 639 SVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTG 698
Query: 688 VEITVQPHNISFAAKNQKVTYSVTFT-RTGNTNASSAQAYLSWVSDKYTVKSPIAISF 744
V+I+V+P ++F N+K +Y+VTFT + + S++ + W K+ V SP+AIS+
Sbjct: 699 VKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 325/772 (42%), Positives = 444/772 (57%), Gaps = 53/772 (6%)
Query: 22 FSPAIIAVRASNESDKDGLQTYIIYVQ------KPEQGDLDSWYRSFLPEATISNSSDHD 75
F I + S+ S+ QTYI+ + K D W+ SFL EA + + +
Sbjct: 7 FLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFD-WHLSFLQEAVL-GVEEEE 64
Query: 76 RNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGL-- 133
SSR+LY Y + I GFAA+LT E + + ++ R ++ L + TT++ FLGL
Sbjct: 65 EEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDG 124
Query: 134 HRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCE----LVGATCN 189
+SG W S FG+G IIGVLDTG+ P PSF+D GMP P KW+G C+ ++CN
Sbjct: 125 FGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCN 184
Query: 190 NKLIGVRNFFCGKDG---------------SAIDYTGHGTHTASTAAGNFVHGANIFGQA 234
KLIG R F G SA D TGHGTHTAST G+ V AN+ G
Sbjct: 185 RKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNG 244
Query: 235 NGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNG 294
G A GMAP AH+AVYKVC N C S ++A ID AI+D VDVLSLS G YD+
Sbjct: 245 AGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDT 303
Query: 295 IAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETY 354
IA TF A+ RGI V AAGN+GP ++ N APW+ T+GA T+DR VRL N +
Sbjct: 304 IAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLL 363
Query: 355 DGEALWQWTDIPS--KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASG--- 409
GE+L+ I + + + ++Y + + FC +L +++GK+V+C RG +G
Sbjct: 364 YGESLYPGKGIKNAGREVEVIYVTGGDKGSE-FCLRGSLPREEIRGKMVICDRGVNGRSE 422
Query: 410 --DDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467
+ V AGG AMIL N E+ + I + LP + + S +KAY+N+T P A ++
Sbjct: 423 KGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARII 482
Query: 468 MKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA----NRV 523
GTVIG AP+V FS RGPS +P ILKPD+I PG+NIIAAW + P +R
Sbjct: 483 FGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRR 542
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
F ++SGTSM+CPH+SG+ AL++SA+PNWS AAIKSA+MTTAD + +GK I D + P
Sbjct: 543 VNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGNK-P 601
Query: 584 ADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKV-SS 642
A ++A+GAG VNP KA +PGLVY+IQP DYI YLC L +T + +I + V C +
Sbjct: 602 AGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRK 661
Query: 643 IPEAELNYPSFSI--KLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFA 700
P LNYPS ++ K G + + R VTNVG S Y+ + APEG+++ V P + F
Sbjct: 662 NPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFK 721
Query: 701 AKNQKVTYSVTFT----RTGNTNASSAQAYLSWVSDK---YTVKSPIAISFE 745
+Q ++Y V F G AS AQ L+WV+ V+SPI+++ +
Sbjct: 722 HVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVTLK 773
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 275/736 (37%), Positives = 407/736 (55%), Gaps = 58/736 (7%)
Query: 34 ESDKDGLQTYIIY----VQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNV 89
+SD DG YI+Y ++ P+ L +R+ L + S + +L+ YK
Sbjct: 25 DSDDDGKNIYIVYMGRKLEDPDSAHLH--HRAMLEQVVGSTFAPES------VLHTYKRS 76
Query: 90 ISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGV 149
+GFA +LT EE + + + +G +S + LHTT + +FLG + + S +
Sbjct: 77 FNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVP--RRSQVESNI 134
Query: 150 IIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA-TCNNKLIGVRNFFCGKDGSA-- 206
++GVLDTGI P PSF+DEG PPP KW+G CE CN K+IG R++ G+ S
Sbjct: 135 VVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGD 194
Query: 207 ----IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPES 262
D GHGTHTASTAAG V AN++G GTA G PLA +A YKVC N C ++
Sbjct: 195 VNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDT 253
Query: 263 AVIAGIDAAIEDGVDVLSLSFG-LGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY 321
++A D AI DGVD++SLS G ++ + IA +F A+ RGI S +AGN GPN +
Sbjct: 254 DILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFF 313
Query: 322 TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV----YPD- 376
T + +PW+L+V AST+DR V++GN +++ G ++ + + + PLV P+
Sbjct: 314 TTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDN---QYYPLVSGRDIPNT 370
Query: 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNA-GGAAMILM--NDELFGDSTL 433
+ ST+ FC+ +++ +KGK+V+C+ + + GAA +LM N + DS
Sbjct: 371 GFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYP 430
Query: 434 IQRNSL-PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRI 492
+ + L PN + + YI S SP A + K T I SAP VV+FS RGP+R
Sbjct: 431 LPSSVLDPNDLL------ATLRYIYSIRSP-GATIFKSTTILNASAPVVVSFSSRGPNRA 483
Query: 493 SPGILKPDIIGPGLNIIAAWKTTVDPLA--NRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+ ++KPDI GPG+ I+AAW +V P+ R F+I+SGTSM+CPH++G+A +K+ +
Sbjct: 484 TKDVIKPDISGPGVEILAAWP-SVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYN 542
Query: 551 PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQP 610
P WS AAIKSA+MTTA +N P + +A G+G VNP KA PGLVYD
Sbjct: 543 PTWSPAAIKSALMTTASPMNARFNPQAE--------FAYGSGHVNPLKAVRPGLVYDANE 594
Query: 611 DDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSP---QTYHRT 667
DY+ +LCG Y + V+ I C ++ +LNYPSF + + S Q ++RT
Sbjct: 595 SDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRT 654
Query: 668 VTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYL 727
+T+V S Y + AP+G+ I+V P+ +SF + ++ T T G+ A L
Sbjct: 655 LTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSF--TLTVRGSIKGFVVSASL 712
Query: 728 SWVSDKYTVKSPIAIS 743
W + V+SPI I+
Sbjct: 713 VWSDGVHYVRSPITIT 728
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 275/744 (36%), Positives = 413/744 (55%), Gaps = 50/744 (6%)
Query: 27 IAVRASNESDKDGLQTYIIYV-QKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYF 85
I+ R ++ D+ YIIY+ +P+ + + ++ + + N S + + R +Y
Sbjct: 22 ISPRYASAEDEHAKDFYIIYLGDRPD--NTEETIKTHINLLSSLNISQEEAKE--RKVYS 77
Query: 86 YKNVISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNF 145
Y + FAA+L+ E K M + +S LHTT + +F+GL ++ +
Sbjct: 78 YTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAK--RHLKA 135
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKC----ELVGATCNNKLIGVRNFF-- 199
+ VIIGVLDTGITP SF D G+ PPPAKW+G C G CNNK+IG + F
Sbjct: 136 ERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTG--CNNKIIGAKYFKHD 193
Query: 200 ----CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
G+ S ID GHGTHT+ST AG V A+++G ANGTA G P A LA+YKVC
Sbjct: 194 GNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWA 253
Query: 256 NVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGN 315
C + ++AG +AAI DGV+++S+S G ++ + + I+ +F A+R+GI +AGN
Sbjct: 254 RSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGN 313
Query: 316 SGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV-- 373
GP+ T+ N PW+LTV AS IDR + LGN +++ G + ++ +K PLV
Sbjct: 314 DGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSP-KAKSYPLVSG 372
Query: 374 ---YPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDD--VLNAGGAAMILMNDELF 428
+ + +C ++L VKGKV++C+ G G + + + GGA I+++D+
Sbjct: 373 VDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYL 432
Query: 429 GDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRG 488
++ + P V+ +V + I YINST S +A V++ T AP V +FS RG
Sbjct: 433 DNAQIFM---APATSVNSSVGDIIYRYINSTRSASA--VIQKTRQVTIPAPFVASFSSRG 487
Query: 489 PSRISPGILKPDIIGPGLNIIAAW--KTTVDPL--ANRVYTFDIVSGTSMACPHLSGVAA 544
P+ S +LKPDI PG++I+AA+ K ++ L + F I+SGTSMACPH++GVAA
Sbjct: 488 PNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAA 547
Query: 545 LLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGL 604
+KS HP+W+ AAIKSA++T+A KPI A+ +A G GQ+NP +A PGL
Sbjct: 548 YVKSFHPDWTPAAIKSAIITSA-------KPISRRVNKDAE-FAYGGGQINPRRAASPGL 599
Query: 605 VYDIQPDDYIPYLCGLNYTDEQVQSIV-DREVQCAK-VSSIPEAELNYPSFSIKLGYSPQ 662
VYD+ Y+ +LCG Y + +V R V C+ V + LNYP+ + L +
Sbjct: 600 VYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKT 659
Query: 663 T----YHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNT 718
+ + R VTNVG S YT + AP+GVEITV+P ++SF+ +QK ++ V T
Sbjct: 660 STLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMT 719
Query: 719 NASSAQAYLSWVSDKYTVKSPIAI 742
L W S +++V+SPI I
Sbjct: 720 PGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 145/518 (27%), Positives = 233/518 (44%), Gaps = 87/518 (16%)
Query: 86 YKNVISGFAARLTAEE---------VKA-----------METKKGFISARVENTLHLHTT 125
Y+ V SGF+ +L A E VKA M+ K IS E+ +
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTIS---EDAVSPQMD 162
Query: 126 HTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVG 185
+ ++G + + W GKG+ + ++DTG+ HP +++G + V
Sbjct: 163 DSAPYIGANDA---WDLGYTGKGIKVAIIDTGVEYNHPDLKKNF-----GQYKG-YDFVD 213
Query: 186 ATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLA 245
+ K + G A D HGTH A T A ANGT G+AP A
Sbjct: 214 NDYDPKETPTGD----PRGEATD---HGTHVAGTVA------------ANGTIKGVAPDA 254
Query: 246 HLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305
L Y+V P VIAG++ A++DG DV++LS G L+ D + A A+
Sbjct: 255 TLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNN-PDWATSTALDWAMSE 313
Query: 306 GIFVSIAAGNSGPNHYTLVN--DAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWT 363
G+ + GNSGPN +T+ + + ++VGA+ + +V G+ + +
Sbjct: 314 GVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLN-EYAVTFGSYSSAKVMGYNKED 372
Query: 364 DIPS---KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA-----SGDDVLNA 415
D+ + K + LV + + D+ GKV + +RG+ D+ A
Sbjct: 373 DVKALNNKEVELV--------EAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKA 424
Query: 416 GGAAMILMNDELFGDSTLIQRN----SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGT 471
G M++ N+ L G+ I+ N S+P +++S E + + + + + T +
Sbjct: 425 GAIGMVVYNN-LSGE---IEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKLTVSK 480
Query: 472 VIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSG 531
+G QV FS RGP + ++KPDI PG+NI++ T DP + Y + G
Sbjct: 481 ALG----EQVADFSSRGPV-MDTWMIKPDISAPGVNIVSTIPTH-DP--DHPYGYGSKQG 532
Query: 532 TSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTV 569
TSMA PH++G A++K A P WS IK+A+M TA T+
Sbjct: 533 TSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTL 570
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P11018|ISP1_BACSU Major intracellular serine protease OS=Bacillus subtilis (strain 168) GN=isp PE=1 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 116 VENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPA 175
V N + P + + ++ W GK + + VLDTG HP
Sbjct: 11 VTNEQIMDVNELPEGIKVIKAPEMWAKGVKGKNIKVAVLDTGCDTSHPDLK--------- 61
Query: 176 KWRGKCELVGATCNNKLIGVRNFF---CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFG 232
N++IG +NF GK+ + DY GHGTH A T A N
Sbjct: 62 --------------NQIIGGKNFTDDDGGKEDAISDYNGHGTHVAGTIAAN--------- 98
Query: 233 QANGTAVGMAPLAHLAVYKVC-NPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY 291
+NG G+AP A L + KV N +I GI+ A+E VD++S+S G G S
Sbjct: 99 DSNGGIAGVAPEASLLIVKVLGGENGSGQYEWIINGINYAVEQKVDIISMSLG-GPSDVP 157
Query: 292 DNGIAKATFEAIRRGIFVSIAAGNSG 317
+ + +A A++ G+ V AAGN G
Sbjct: 158 E--LKEAVKNAVKNGVLVVCAAGNEG 181
|
Major intracellular protease produced by Bacillus subtilis. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P06873|PRTK_TRIAL Proteinase K OS=Tritirachium album GN=PROK PE=1 SV=2 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 68/272 (25%)
Query: 84 YFYKNVISGFAARLTAEEVKAMETKKG--FISARVENTLHLHTTHTPNFLGLHR------ 135
+ YKNV SGFAA L V+ + +I T++ T+ P GL R
Sbjct: 66 HVYKNVFSGFAATLDENMVRVLRAHPDVEYIEQDAVVTINAAQTNAP--WGLARISSTSP 123
Query: 136 -SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIG 194
+S ++ D + G+G + V+DTGI HP F G+ ++V
Sbjct: 124 GTSTYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQMVKTY------- 164
Query: 195 VRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCN 254
++ +DG+ GHGTH A T G+ +G A T L KV +
Sbjct: 165 ---YYSSRDGN-----GHGTHCAGTV------GSRTYGVAKKT--------QLFGVKVLD 202
Query: 255 PNVYCPESAVIAGIDAAIED--------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRG 306
N S +IAG+D D GV V SLS G G Y + + A G
Sbjct: 203 DNGSGQYSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGG----YSSSVNSAAARLQSSG 257
Query: 307 IFVSIAAGNSGPN--HYTLVNDAPWMLTVGAS 336
+ V++AAGN+ + +Y+ ++ P + TVGAS
Sbjct: 258 VMVAVAAGNNNADARNYSPASE-PSVCTVGAS 288
|
Hydrolyzes keratin at aromatic and hydrophobic residues. Tritirachium album (taxid: 37998) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 6 EC: 4 |
| >sp|P29139|ISP_PAEPO Intracellular serine protease OS=Paenibacillus polymyxa GN=isp PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 80/198 (40%), Gaps = 39/198 (19%)
Query: 123 HTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCE 182
P + + ++ W + G+GV + VLDTG HP
Sbjct: 18 QVNEIPRGVEMIQAPAVWNQTR-GRGVKVAVLDTGCDADHPDLK---------------- 60
Query: 183 LVGATCNNKLIGVRNFFCGKDGSA---IDYTGHGTHTASTAAGNFVHGANIFGQANGTAV 239
++IG RNF +G DY GHGTH A T A + V
Sbjct: 61 -------ARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAAT---------ENENGVV 104
Query: 240 GMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKAT 299
G+AP A L + KV N +I GI AIE VD++S+S G G + + +A
Sbjct: 105 GVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLG-GPEDVPE--LHEAV 161
Query: 300 FEAIRRGIFVSIAAGNSG 317
+A+ I V AAGN G
Sbjct: 162 KKAVASQILVMCAAGNEG 179
|
Involved in the generation of beta- and alpha-amylases from the large amylase precursor. Paenibacillus polymyxa (taxid: 1406) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 130/543 (23%), Positives = 220/543 (40%), Gaps = 83/543 (15%)
Query: 65 EATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLHLHT 124
+A++ + + Q++ Y Y V++GF+ ++ ++ ++ G + + ++ T
Sbjct: 131 QASVKAAVEQVTQQTAGESYGY--VVNGFSTKVRVVDIPKLKQIAGVKTVTLAK-VYYPT 187
Query: 125 THTPNFLGLHRSSGFWKDSNF-GKGVIIGVLDTGITPGHPSF-----NDEGMPPPPAKWR 178
N + W + + G+G ++ V+D+GI P H D + +
Sbjct: 188 DAKAN--SMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKF 245
Query: 179 GKCELVGATCNNKLIGVRNFFCGKDGSAIDYTG--HGTHTASTAAGNFVHGANIFGQANG 236
G N+K+ N+ D D HG H A + GAN G
Sbjct: 246 TDTAKHGRYFNSKVPYGFNYADNNDTITDDTVDEQHGMHVAG------IIGANGTGDDPA 299
Query: 237 -TAVGMAPLAHLAVYKV---CNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGL--GLSQF 290
+ VG+AP A L KV + + S +++ I+ + + G DVL++S G G
Sbjct: 300 KSVVGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTL 359
Query: 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPN---------HYTLVNDAPWMLTVGASTIDRG 341
D +A A A G I+AGNSG + Y + D + T G S RG
Sbjct: 360 EDPELA-AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTS---RG 415
Query: 342 ITISVRLGNQETY-------DGEALW-----------QWTDIPSKRLPLVYPDARNHSTT 383
T N + DG L +T ++ V DA + +
Sbjct: 416 ATTVASAENTDVITQAVTITDGTGLQLGPGTIQLSSNDFTGSFDQKKFYVVKDASGNLSK 475
Query: 384 TFCSPETLKSVDVKGKVVLCQRGA-SGDDVLN----AGGAAMILMNDELFGDSTLIQRNS 438
+ T D KGK+ + +RG S DD AG A +I++N++ G +T + +
Sbjct: 476 GALADYT---ADAKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVNND--GTATPVTSMA 530
Query: 439 L----PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGG--SAPQVVAFSGRGPSRI 492
L P +S + + ++ + + + + T++ + ++ F+ GP +
Sbjct: 531 LTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGP--V 588
Query: 493 SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPN 552
S KPDI PG NI W T N YT +SGTSMA P ++G ALLK A N
Sbjct: 589 SNLSFKPDITAPGGNI---WSTQ----NNNGYTN--MSGTSMASPFIAGSQALLKQALNN 639
Query: 553 WSH 555
++
Sbjct: 640 KNN 642
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q69F35|SUB4_TRIRU Subtilisin-like protease 4 OS=Trichophyton rubrum GN=SUB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 57/218 (26%)
Query: 134 HRSSG---FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNN 190
HR +G + D + G+GV I +DTGI H F RG+ T
Sbjct: 136 HRQAGSRDYVFDDSAGRGVTIYGVDTGIDINHQDF------------RGRARWGTNTA-- 181
Query: 191 KLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVY 250
D D GHGTHTAST AG TA G+A A++
Sbjct: 182 ------------DRDNADRHGHGTHTASTFAG--------------TAYGIAKNANIVAV 215
Query: 251 KVCNPNVYCPESAVIAGIDAAIED-------GVDVLSLSFGLGLSQFYDNGIAKATFEAI 303
KV + S +IAGI+ ++D G ++LS G G SQ ++ + +A
Sbjct: 216 KVLGSDGSGSTSGIIAGINYCVQDAQQRGILGKAAMNLSLGGGFSQANNDAVTRAQ---- 271
Query: 304 RRGIFVSIAAGNSGPN--HYTLVNDAPWMLTVGASTID 339
GIFV++AAGN + +Y+ + AP + TV +STI+
Sbjct: 272 NAGIFVAVAAGNDNKDARNYSPAS-APAVCTVASSTIN 308
|
Secreted subtilisin-like serine protease with keratinolytic activity that contributes to pathogenicity. Trichophyton rubrum (taxid: 5551) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| 225426708 | 772 | PREDICTED: subtilisin-like protease SDD1 | 0.943 | 0.910 | 0.589 | 0.0 | |
| 225426706 | 740 | PREDICTED: subtilisin-like protease SDD1 | 0.967 | 0.974 | 0.563 | 0.0 | |
| 225426710 | 755 | PREDICTED: subtilisin-like protease SDD1 | 0.971 | 0.958 | 0.569 | 0.0 | |
| 255537183 | 738 | Xylem serine proteinase 1 precursor, put | 0.970 | 0.979 | 0.566 | 0.0 | |
| 224071656 | 773 | predicted protein [Populus trichocarpa] | 0.973 | 0.937 | 0.579 | 0.0 | |
| 255537205 | 767 | Cucumisin precursor, putative [Ricinus c | 0.946 | 0.919 | 0.571 | 0.0 | |
| 255537189 | 745 | Xylem serine proteinase 1 precursor, put | 0.936 | 0.936 | 0.585 | 0.0 | |
| 224058637 | 698 | predicted protein [Populus trichocarpa] | 0.922 | 0.984 | 0.592 | 0.0 | |
| 255537203 | 758 | Xylem serine proteinase 1 precursor, put | 0.936 | 0.920 | 0.588 | 0.0 | |
| 225426704 | 744 | PREDICTED: subtilisin-like protease SDD1 | 0.944 | 0.946 | 0.581 | 0.0 |
| >gi|225426708|ref|XP_002275452.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/726 (58%), Positives = 541/726 (74%), Gaps = 23/726 (3%)
Query: 36 DKDGLQTYIIYVQKPEQ------GDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNV 89
+ D LQTYI++V++ + L+SWY SFLP AT S+ N+ R++Y Y+NV
Sbjct: 54 ESDHLQTYIVHVKRTHRRVFTKSDGLESWYESFLPVATASS------NRKQRIVYSYRNV 107
Query: 90 ISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGV 149
++GFAA+LTA+EVKAME K GF+SAR + L LHTTH+P+FLGLH+ GFWK SN+GKGV
Sbjct: 108 LNGFAAKLTAQEVKAMEEKDGFVSARPQRILPLHTTHSPSFLGLHQELGFWKGSNYGKGV 167
Query: 150 IIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-SAID 208
IIGVLDTG+ P HPSF+DEG+PPPPAKW+GKC+ +CNNK+IG RNF G + ID
Sbjct: 168 IIGVLDTGLFPDHPSFSDEGLPPPPAKWKGKCDFNWTSCNNKIIGARNFDSGAEAVPPID 227
Query: 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGI 268
GHGTHTASTAAGNFV A+ G ANGTAVGMAP AHLA+YKVC+ C ++ ++A +
Sbjct: 228 EEGHGTHTASTAAGNFVPNADALGNANGTAVGMAPFAHLAIYKVCS-EFGCADTDILAAL 286
Query: 269 DAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAP 328
D AIEDGVDVLSLS G G + F+ + IA F AI++GIFVS +AGNSGP + +L N+AP
Sbjct: 287 DTAIEDGVDVLSLSLGGGSAPFFADSIALGAFSAIQKGIFVSCSAGNSGPLNGSLSNEAP 346
Query: 329 WMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSP 388
W+LTVGASTIDR I + LGN E +DGE+L+Q +D PS LPLVY A ++++ C+P
Sbjct: 347 WILTVGASTIDRKIMATATLGNGEEFDGESLFQPSDFPSTLLPLVYAGANGNASSALCAP 406
Query: 389 ETLKSVDVKGKVVLCQRG------ASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNV 442
E+LK VDV GKVV+C RG A G +V +AGGAAMIL NDEL G STL+ + LP
Sbjct: 407 ESLKDVDVAGKVVVCDRGGGIGRIAKGQEVKDAGGAAMILTNDELNGFSTLVDAHVLPAT 466
Query: 443 RVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502
VS+A IK+YI S S+PTA +V KGT+IG +AP+V +FS RGPS SPGILKPDII
Sbjct: 467 HVSYAAGLKIKSYIKSDSAPTATIVFKGTIIGVPTAPEVTSFSSRGPSLESPGILKPDII 526
Query: 503 GPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAM 562
GPG++I+AAW ++ TF+++SGTSM+CPHLSG+AAL+KSAHP+WS AAIKSA+
Sbjct: 527 GPGVSILAAWPFPLENDTTSKPTFNVISGTSMSCPHLSGIAALIKSAHPDWSPAAIKSAI 586
Query: 563 MTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNY 622
+TTAD NLE KPI+D T PADL+A GAG VNPS ANDPGL+YD++PDDYIPYLCGL Y
Sbjct: 587 ITTADLHNLENKPIIDETFQPADLFATGAGHVNPSAANDPGLIYDLEPDDYIPYLCGLGY 646
Query: 623 TDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQM 682
TDE+V IV+R ++C++ SSIPEA+LNYPSFSI LG S TY RTVTNVG A S Y+ Q+
Sbjct: 647 TDEEVGLIVNRTLKCSEESSIPEAQLNYPSFSIALGPSSGTYSRTVTNVGAANSSYSVQI 706
Query: 683 VAPEGVEITVQPHNISFAAKNQKVTYSVTFTRT---GNTNASSAQAYLSWVSDKYTVKSP 739
+AP GVE++V P + F NQK+TY V+F+RT G AQ +L WVSD ++V+SP
Sbjct: 707 LAPSGVEVSVNPDKLEFTEVNQKITYMVSFSRTSAGGEGGKPFAQGFLKWVSDSHSVRSP 766
Query: 740 IAISFE 745
I++ FE
Sbjct: 767 ISVMFE 772
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426706|ref|XP_002275429.1| PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/752 (56%), Positives = 548/752 (72%), Gaps = 31/752 (4%)
Query: 11 VLVSLVFIIIN-FSPAIIAVRASNESDKDGLQTYIIYVQKP------EQGDLDSWYRSFL 63
++ L FI ++ FSPAI +DK +TY+I+V+ P E +L+SWY+SF+
Sbjct: 3 IVFLLAFICMSGFSPAI--------ADKTQFKTYVIHVKHPNNEEVAEAQNLESWYKSFM 54
Query: 64 PEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLHLH 123
P + + D +Q R+++ Y++V++GFAARLT +EV AM+ K GF+SAR E HLH
Sbjct: 55 PTSMTA-----DSDQQPRIVHSYQHVMTGFAARLTEDEVNAMKEKDGFVSARPEKIFHLH 109
Query: 124 TTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL 183
TTHTP FLGLH+ SGFWK SN GKGVIIGVLDTG+ P H SF+D GMPPPPAKW+GKCE
Sbjct: 110 TTHTPGFLGLHKGSGFWKGSNLGKGVIIGVLDTGVLPDHVSFSDAGMPPPPAKWKGKCEF 169
Query: 184 VGATCNNKLIGVRNFFCGKDGSA-IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMA 242
G +CNNKLIG RNF G+ D GHGTHTASTAAGNFV A++FG A GTAVGMA
Sbjct: 170 KGTSCNNKLIGARNFDSESTGTPPSDEEGHGTHTASTAAGNFVKHASVFGNAKGTAVGMA 229
Query: 243 PLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEA 302
P AHLA+YKVC+ + C S ++A +DAAIEDGVDVLSLS G F+++ IA F A
Sbjct: 230 PHAHLAIYKVCSES-GCAGSDILAALDAAIEDGVDVLSLSLGGQSFPFHEDPIALGAFAA 288
Query: 303 IRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQW 362
R+GIFVS +AGN GP + TL N+APW+LTV AST+DR I V+LGN + +DGE+L+Q
Sbjct: 289 TRKGIFVSCSAGNEGPTNSTLSNEAPWILTVAASTMDRSIKAMVKLGNGKNFDGESLFQP 348
Query: 363 TDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA------SGDDVLNAG 416
D PS++LPLVY A +++++ FC +LK +DVKGKVV+C RG G +V NAG
Sbjct: 349 RDFPSEQLPLVYAGAGSNASSAFCGEGSLKDLDVKGKVVVCDRGGGISRIDKGKEVKNAG 408
Query: 417 GAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGG 476
GAAMIL N + G STL +SLP V ++ SIKAYINS++ PTA L+ KGT+IG
Sbjct: 409 GAAMILTNGKPDGFSTLADPHSLPAAHVGYSAGLSIKAYINSSNKPTATLLFKGTIIGKS 468
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536
+AP++ +FS RGPS SPGILKPDI GPG++++AAW ++VD + F+++SGTSM+C
Sbjct: 469 AAPEITSFSSRGPSLASPGILKPDITGPGVSVLAAWPSSVDNRTDSKVAFNMISGTSMSC 528
Query: 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596
PHLSG+AALLKS+HP WS AAIKSA+MTTAD +NL+G PILD T PAD++AVGAG VNP
Sbjct: 529 PHLSGIAALLKSSHPEWSPAAIKSAIMTTADVLNLKGDPILDETHEPADVFAVGAGHVNP 588
Query: 597 SKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIK 656
S+ANDPGL+YDIQP+DYIPYLCGL Y D QV++I+ +VQC+K SSIPEA+LNYPSFS+
Sbjct: 589 SRANDPGLIYDIQPNDYIPYLCGLGYNDTQVRAIIRHKVQCSKESSIPEAQLNYPSFSVA 648
Query: 657 LGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTG 716
+G S RTVTNVG+AK+ Y ++ AP+GV+++V+P + F NQK TY+VTF R
Sbjct: 649 MGSSALKLQRTVTNVGEAKASYIVKISAPQGVDVSVKPRKLDFTQTNQKKTYTVTFERKD 708
Query: 717 NTNASS---AQAYLSWVSDKYTVKSPIAISFE 745
+ S AQ +L WVS K++V+SPI++ FE
Sbjct: 709 DGKTGSKPFAQGFLEWVSAKHSVRSPISVKFE 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426710|ref|XP_002275471.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/760 (56%), Positives = 549/760 (72%), Gaps = 36/760 (4%)
Query: 12 LVSLVFIIINFSPAIIAVRASNES----DKDGLQTYIIYVQKPE------QGDLDSWYRS 61
+++VFI+ FSP I + S +K LQTYI++V++ E Q +L+SW+RS
Sbjct: 6 FLTIVFILY-FSPEIAQGSQFSSSIETTEKSMLQTYIVHVKQLERSTTAQQENLESWHRS 64
Query: 62 FLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLH 121
FLP AT ++ + R++Y YKNVISGFAARLT EEV+AME GFISA E L
Sbjct: 65 FLPVATATS------DNQERLVYSYKNVISGFAARLTEEEVRAMENMDGFISASPEKMLP 118
Query: 122 LHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKC 181
L TTH+P+FLGLH+ GFWK+SNFGKGVIIGVLD+G+ P HPSF+ EG+PPPPAKW+G C
Sbjct: 119 LLTTHSPDFLGLHQEMGFWKESNFGKGVIIGVLDSGVLPSHPSFSGEGIPPPPAKWKGSC 178
Query: 182 ELVGATCNNKLIGVRNFFCGKDGSA-------IDYTGHGTHTASTAAGNFVHGANIFGQA 234
E + + CNNKLIG R+F G + +D GHGTHTASTAAG FV A++ G A
Sbjct: 179 EFMASECNNKLIGARSFNVGAKATKGVTAEPPLDDDGHGTHTASTAAGAFVKNADVLGNA 238
Query: 235 NGTAVGMAPLAHLAVYKVC-NPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDN 293
GTAVGMAP AHLA+YKVC P+ CPES VIAG+DAA+EDGVDV+S+S G F+ +
Sbjct: 239 KGTAVGMAPYAHLAIYKVCFGPD--CPESDVIAGLDAAVEDGVDVISISLGDPAVPFFQD 296
Query: 294 GIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQET 353
IA +F A+++GIFVS +AGNSGP + TL N+APW+LTVGAS+IDR I + +LGN E
Sbjct: 297 NIAVGSFAAMQKGIFVSCSAGNSGPFNTTLSNEAPWILTVGASSIDRTIKAAAKLGNGEQ 356
Query: 354 YDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA------ 407
+DGE L+Q +D P+ +LPLVY + C +LK++DVKGKVVLC RG
Sbjct: 357 FDGETLFQPSDFPATQLPLVYAGMNGKPESAVCGEGSLKNIDVKGKVVLCDRGGGIARID 416
Query: 408 SGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467
G +V NAGGAAMIL+N E G STL + LP VS+A IKAYINST++PTAA++
Sbjct: 417 KGTEVKNAGGAAMILVNQESDGFSTLADAHVLPATHVSYAAGLKIKAYINSTATPTAAIL 476
Query: 468 MKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFD 527
KGTVIG +P + +FS RGPS SPGILKPDIIGPG++I+AAW +D N TF+
Sbjct: 477 FKGTVIGNPLSPAITSFSSRGPSFASPGILKPDIIGPGVSILAAWPFPLDNNINSKSTFN 536
Query: 528 IVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLY 587
I+SGTSM+CPHLSG+AALLKS+HP+WS AAIKSA+MTTAD +N+ GKPI+D LPAD++
Sbjct: 537 IISGTSMSCPHLSGIAALLKSSHPDWSPAAIKSAIMTTADLLNVGGKPIVDERLLPADIF 596
Query: 588 AVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAE 647
A GAG VNPS+ANDPGLVYDI+PDDYIPYLCGL YTD +V + R ++C++ SSIPE E
Sbjct: 597 ATGAGHVNPSRANDPGLVYDIEPDDYIPYLCGLGYTDTEVGILAHRSIKCSEESSIPEGE 656
Query: 648 LNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVT 707
LNYPSFS+ LG PQT+ RTVTNVG+A S YT + P+GV+++V P + F+ NQK+T
Sbjct: 657 LNYPSFSVALG-PPQTFTRTVTNVGEAYSSYTVTAIVPQGVDVSVNPDKLYFSKVNQKLT 715
Query: 708 YSVTFTRTGNTNASS--AQAYLSWVSDKYTVKSPIAISFE 745
YSVTF+ ++ SS AQ YL WVS K++V SPI+I F+
Sbjct: 716 YSVTFSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISIMFK 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537183|ref|XP_002509658.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549557|gb|EEF51045.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/749 (56%), Positives = 542/749 (72%), Gaps = 26/749 (3%)
Query: 12 LVSLVFIIINFSPAIIAVRASNES----DKDGLQTYIIYVQKP------EQGDLDSWYRS 61
++ ++F++ + + V +SN ++ L+TYII ++KP E DL WY S
Sbjct: 1 MLQIMFLLALLVHSFVNVGSSNNDPIVIEETNLETYIILLEKPQGADFMEFNDLHGWYLS 60
Query: 62 FLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLH 121
FLP T S+ + SR+++ Y++V++GFAA+LTAEE KAME ++GF+ AR + +
Sbjct: 61 FLPANTFSS-------EQSRLVHSYRHVVTGFAAKLTAEEAKAMEMREGFVLARPQRMVP 113
Query: 122 LHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKC 181
LHTTHTP+FLGL ++ GFWK SNFGKGVIIGV+D+GITP HPSF+ EGMPPPPAKW GKC
Sbjct: 114 LHTTHTPSFLGLQQNLGFWKHSNFGKGVIIGVVDSGITPDHPSFSGEGMPPPPAKWTGKC 173
Query: 182 ELVGA-TCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVG 240
EL G +CNNKLIG RNF + D HGTHTASTAAG+ V GA+ FGQANGTA+G
Sbjct: 174 ELKGTLSCNNKLIGARNFATNSN-DLFDKVAHGTHTASTAAGSPVQGASYFGQANGTAIG 232
Query: 241 MAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATF 300
MAPLAHLA+YKV ES ++A +DAAIE+GVD+LSLS G+G FYD+ IA +
Sbjct: 233 MAPLAHLAMYKVSGRARKAGESEILAAMDAAIEEGVDILSLSLGIGTHPFYDDVIALGAY 292
Query: 301 EAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALW 360
AI++ IFVS +AGNSGP +L N+APW+LTVGAST+DR I +V LGN+ +GE+L+
Sbjct: 293 AAIQKRIFVSCSAGNSGPYSCSLSNEAPWILTVGASTVDRAIRATVLLGNKVELNGESLF 352
Query: 361 QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRG----ASGDDVLNAG 416
Q D PS LPLVY A ++++ C +LK+VDVKGK+VLC+ G + G +V + G
Sbjct: 353 QPKDFPSTLLPLVYAGANGNASSASCDHGSLKNVDVKGKIVLCEGGIETISKGQEVKDNG 412
Query: 417 GAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGG 476
GAAMI+MND+L G T + + LP VS+ SIKAYINS SSP A ++ KGTV+G
Sbjct: 413 GAAMIVMNDDLEGFITAPRLHVLPASHVSYEAGSSIKAYINSASSPKATILFKGTVVGLS 472
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536
APQV FS RGPS SPGILKPDIIGPG+ I+AAW +VD +NR F+++SGTSM+C
Sbjct: 473 DAPQVAYFSSRGPSCASPGILKPDIIGPGVRILAAWPVSVDNTSNR---FNMISGTSMSC 529
Query: 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596
PHL+G+AALLKSAHP+WS AAIKSA+MTTA NL GKPI D +PA ++ +GAG VNP
Sbjct: 530 PHLTGIAALLKSAHPDWSPAAIKSAIMTTASLDNLGGKPISDQDYVPATVFDMGAGHVNP 589
Query: 597 SKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIK 656
S+ANDPGLVYDIQPDDYIPYLCGL Y+D+ V+ IV R+V+C V++IPEA+LNYPSFSIK
Sbjct: 590 SRANDPGLVYDIQPDDYIPYLCGLGYSDKHVRVIVQRKVKCTNVATIPEAQLNYPSFSIK 649
Query: 657 LGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTG 716
LG SPQTY RTVTN G+ S Y ++ AP+GV++ V P I+F NQK TYS TF++ G
Sbjct: 650 LGSSPQTYTRTVTNFGQPNSAYYLEIFAPKGVDVMVTPQKITFNGVNQKATYSATFSKNG 709
Query: 717 NTNASSAQAYLSWVSDKYTVKSPIAISFE 745
N N AQ YL WV++ Y+V SPIA+ FE
Sbjct: 710 NANGLFAQGYLKWVAEGYSVGSPIAVIFE 738
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071656|ref|XP_002303550.1| predicted protein [Populus trichocarpa] gi|222840982|gb|EEE78529.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/753 (57%), Positives = 535/753 (71%), Gaps = 28/753 (3%)
Query: 4 EMLNTGAVLVSLVFIIINFSPAIIA-----VRASNESDKDGLQTYIIYVQKPEQG----D 54
E+L T V+V LV I FS +R S S K +TYI++VQKPE+G D
Sbjct: 7 ELLPT-MVIVFLVGFISMFSSQAYTDEGKPLRTSETSQKGKFETYIVFVQKPEEGVSADD 65
Query: 55 LDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISA 114
LDSWY+SFLP TI +S N RM+Y Y++V +GFAA+LTAEE KAME K GF+SA
Sbjct: 66 LDSWYKSFLP-VTIPSS-----NHQERMVYSYRHVATGFAAKLTAEEAKAMEDKDGFLSA 119
Query: 115 RVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPP 174
+ + L LHTTH+PNFLGL ++ GFW++S +GKGVIIGVLDTGI+P HPSF+DEG+PPPP
Sbjct: 120 KPQKILSLHTTHSPNFLGLQKNLGFWRNSTYGKGVIIGVLDTGISPDHPSFSDEGVPPPP 179
Query: 175 AKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQA 234
KW+GKC G CNNKLIG R+F K D GHGTHTASTAAGNFV+ A++FG A
Sbjct: 180 TKWKGKCNFNGTVCNNKLIGARDFTSSKAAPPFDEEGHGTHTASTAAGNFVNDASVFGNA 239
Query: 235 NGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNG 294
NGTAVGMAPLAHLA+YKVC+ + C +S ++A +DAA+EDGVDVLSLS G G + F+++
Sbjct: 240 NGTAVGMAPLAHLAIYKVCS-DFGCADSDILAAMDAAVEDGVDVLSLSLGGGSAPFFEDS 298
Query: 295 IAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETY 354
IA F A ++GIFVS +AGN GP + +L N+APW+LTVGASTIDR I V LGN +
Sbjct: 299 IAVGAFGATQKGIFVSCSAGNEGPYNGSLSNEAPWILTVGASTIDRSIRADVLLGNSNHF 358
Query: 355 DGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA------S 408
GE+L+Q P + LVY A + FC+PE+L +DVKGK+VLC+RG
Sbjct: 359 FGESLFQSNSPP--YMSLVYAGAHGSQSAAFCAPESLTDIDVKGKIVLCERGGGIARIDK 416
Query: 409 GDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVM 468
G V +AGGAAMILMND+ G STL + LP VS++ SIKAYINST PTA ++
Sbjct: 417 GQAVKDAGGAAMILMNDKDSGYSTLADAHVLPASHVSYSAGLSIKAYINSTQVPTATIMF 476
Query: 469 KGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528
GT IG +AP V +FS RGPS SPGILKPDIIGPG++I+AAW +V+ + TF+I
Sbjct: 477 LGTKIGDKTAPTVASFSSRGPSLASPGILKPDIIGPGVSILAAWPVSVENKTDTKSTFNI 536
Query: 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYA 588
+SGTSM+CPHLSG+AALLKSAHP+WS AAIKSA+MTTAD VNL +PILD LPAD+ A
Sbjct: 537 ISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADLVNLGNQPILDERLLPADILA 596
Query: 589 VGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAEL 648
GAGQVNPSKA+DPGLVYDIQPDDYIPYLCGL Y D+ + IV R+V C++ SSI EA+L
Sbjct: 597 TGAGQVNPSKASDPGLVYDIQPDDYIPYLCGLGYPDKDISYIVQRQVNCSEESSILEAQL 656
Query: 649 NYPSFSIKLGYSP--QTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKV 706
NYPSFSI G +P QTY RTVTNVG S YT + P GV +TV P NI F Q
Sbjct: 657 NYPSFSIVYGPNPATQTYTRTVTNVGPPNSSYTAFVDPPPGVNVTVTPKNIIFTNTEQTA 716
Query: 707 TYSVTFTRTGNTNASS-AQAYLSWVSDKYTVKS 738
TYSVTFT T +N Q Y+ WVSDK++++S
Sbjct: 717 TYSVTFTATSESNNDPIGQGYIRWVSDKHSIRS 749
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537205|ref|XP_002509669.1| Cucumisin precursor, putative [Ricinus communis] gi|223549568|gb|EEF51056.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/733 (57%), Positives = 524/733 (71%), Gaps = 28/733 (3%)
Query: 36 DKDGLQTYIIYVQKPE------QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNV 89
+K LQTYI++V +PE DL +W++SFL +T S+ + Q RMLY Y+N+
Sbjct: 40 EKKNLQTYIVHVNQPEGRTFSQPEDLKNWHKSFLSFSTASS----EEEQQQRMLYSYQNI 95
Query: 90 ISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGV 149
ISGF+ARLT EEVKAME GF+SA +E L L TTHTP+FLGLH+ G WKDS+FGKGV
Sbjct: 96 ISGFSARLTQEEVKAMEEITGFVSACLERKLRLQTTHTPSFLGLHQQMGLWKDSDFGKGV 155
Query: 150 IIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG----- 204
IIG+LD G+ P HPSF+DEGMP PPAKW+G+CE + CNNKLIG R F
Sbjct: 156 IIGILDGGVYPSHPSFSDEGMPLPPAKWKGRCEFNASECNNKLIGARTFNLAAKTMKGAP 215
Query: 205 --SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVC--NPNVYCP 260
ID GHGTHTASTAAG FV+ +++ G A GTAVGMAP AHLA+YKVC +PN CP
Sbjct: 216 TEPPIDVDGHGTHTASTAAGGFVYNSDVLGNAKGTAVGMAPFAHLAIYKVCFGDPNDDCP 275
Query: 261 ESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH 320
ES V+AG+DAA++DGVDVLSLS G F+ + IA +F AI++GIFVS +AGNSGP+
Sbjct: 276 ESDVLAGLDAAVDDGVDVLSLSLGDVSMPFFQDNIAIGSFAAIQKGIFVSCSAGNSGPSK 335
Query: 321 YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNH 380
TL N+APW+LTVGASTIDR I +LGN E DGE++ Q ++ P+ LP+VY +
Sbjct: 336 STLSNEAPWILTVGASTIDRRIVAIAKLGNGEELDGESVSQPSNFPTTLLPIVYAGMNSK 395
Query: 381 STTTFCSPETLKSVDVKGKVVLCQRG------ASGDDVLNAGGAAMILMNDELFGDSTLI 434
+ FC L+ ++VK KVV+C+RG A GD+V NAGGAAMIL+NDE G ST+
Sbjct: 396 PDSAFCGEGALEGMNVKDKVVMCERGGGIGRIAKGDEVKNAGGAAMILVNDETNGFSTIA 455
Query: 435 QRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISP 494
+ LP VS A IKAYINST +P A ++ KGTVIG S+P V +FS RGPS SP
Sbjct: 456 DAHVLPATHVSFAAGLKIKAYINSTKTPMATILFKGTVIGDSSSPAVTSFSSRGPSLASP 515
Query: 495 GILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWS 554
GILKPDIIGPG++I+AAW +D N TF+I+SGTSM+CPHLSG+AALLKS+HP WS
Sbjct: 516 GILKPDIIGPGVSILAAWPFPLDNNTNTKLTFNIMSGTSMSCPHLSGIAALLKSSHPYWS 575
Query: 555 HAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYI 614
AAIKSA++TTAD +N+EGKPI+D T PAD +A GAG VNPS+ANDPGLVYDIQPDDYI
Sbjct: 576 PAAIKSAIVTTADILNMEGKPIVDETHQPADFFATGAGHVNPSRANDPGLVYDIQPDDYI 635
Query: 615 PYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKA 674
PYLCGLNYTDEQV I R + C+ + +I E +LNYPSFS+ LG PQT+ RTVTNVG A
Sbjct: 636 PYLCGLNYTDEQVSIIAHRPISCSTIQTIAEGQLNYPSFSVTLG-PPQTFIRTVTNVGYA 694
Query: 675 KSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASS--AQAYLSWVSD 732
S + + +P GV ++V+P + F+ NQK TYS+TF+ TG +S Q Y++WVSD
Sbjct: 695 NSVFAATITSPPGVAVSVKPSRLYFSKLNQKATYSITFSHTGYGAKTSEFGQGYITWVSD 754
Query: 733 KYTVKSPIAISFE 745
KY V SPI++ F+
Sbjct: 755 KYFVGSPISVRFK 767
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537189|ref|XP_002509661.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549560|gb|EEF51048.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/723 (58%), Positives = 528/723 (73%), Gaps = 25/723 (3%)
Query: 34 ESDKDGLQTYIIYVQK------PEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYK 87
ESD L+TYII ++K E DL SWY+SFLP T S+ + SR+++ Y+
Sbjct: 37 ESD---LETYIILLEKSEGREFKESKDLRSWYQSFLPANTSSS-------ELSRLVHSYR 86
Query: 88 NVISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGK 147
+V++GFAA+LTAEE KAME ++GF+ AR + + LHTTHTP+FLGL ++ GFWK SNFGK
Sbjct: 87 HVVTGFAAKLTAEEAKAMEMREGFVLARPQRMVPLHTTHTPSFLGLQQNLGFWKHSNFGK 146
Query: 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA-TCNNKLIGVRNFFCGKDGSA 206
GVIIGV+D+GITP HPSF+ EGMPPPP KW GKCEL G +CNNKLIG RNF +
Sbjct: 147 GVIIGVVDSGITPDHPSFSGEGMPPPPEKWTGKCELKGTLSCNNKLIGARNFATNSN-DL 205
Query: 207 IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIA 266
D HGTHTASTAAG+ V GA+ FGQANGTA+GMAPLAHLA+YKV ES ++A
Sbjct: 206 FDEVAHGTHTASTAAGSPVQGASYFGQANGTAIGMAPLAHLAMYKVSGRGRKVGESEILA 265
Query: 267 GIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVND 326
+DAAIE+GVD+LSLS G+G FYD+ +A + AI++GIFVS +AGNSGP++ +L N+
Sbjct: 266 AMDAAIEEGVDILSLSLGIGTHPFYDDVVALGAYAAIQKGIFVSCSAGNSGPDNSSLSNE 325
Query: 327 APWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFC 386
APW+LTVGAST+DR I +V LGN+ +GE+L+Q PS LPLVY A ++ + C
Sbjct: 326 APWILTVGASTVDRAIRATVLLGNKAELNGESLFQPKYFPSTLLPLVYAGANGNALSASC 385
Query: 387 SPETLKSVDVKGKVVLCQRG----ASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNV 442
TL++VDVKGK+VLC+ G + G +V GGAAMI+MN E G ST + LP
Sbjct: 386 DDGTLRNVDVKGKIVLCEGGSGTISKGQEVKENGGAAMIVMNYENEGFSTEASLHVLPAS 445
Query: 443 RVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502
V++ +IKAYINSTSSP A ++ KGTV+G APQV FS RGPS SPGILKPDII
Sbjct: 446 HVNYEAGSAIKAYINSTSSPKATILFKGTVVGLTDAPQVAYFSSRGPSMASPGILKPDII 505
Query: 503 GPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAM 562
GPG+ I+AAW +VD NR F+++SGTSM+CPHLSG+AALLKSAHP+WS AAIKSA+
Sbjct: 506 GPGVRILAAWPVSVDNTTNR---FNMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAI 562
Query: 563 MTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNY 622
MTTA+ NL GKPI D +P+ ++ +GAG VNPS+ANDPGL+YDIQPDDYIPYLCGL Y
Sbjct: 563 MTTANLDNLGGKPISDEDFVPSTVFDMGAGHVNPSRANDPGLIYDIQPDDYIPYLCGLGY 622
Query: 623 TDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQM 682
+D+ V+ IV R+V+C V+SIPEA+LNYPSFSI LG PQTY RTVTN G+ S Y ++
Sbjct: 623 SDKHVRVIVQRKVKCTNVTSIPEAQLNYPSFSIILGSKPQTYTRTVTNFGQPNSAYDFEI 682
Query: 683 VAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAI 742
AP+GV+I V PH ISF+ QK TYSVTF+R G N S AQ YL W++D Y V SPIAI
Sbjct: 683 FAPKGVDILVTPHRISFSGLKQKATYSVTFSRNGKANGSFAQGYLKWMADGYKVNSPIAI 742
Query: 743 SFE 745
FE
Sbjct: 743 IFE 745
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058637|ref|XP_002299578.1| predicted protein [Populus trichocarpa] gi|222846836|gb|EEE84383.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/702 (59%), Positives = 514/702 (73%), Gaps = 15/702 (2%)
Query: 51 EQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKG 110
E+ +LDSWY+SFLP T S+S+ R+++ Y NV++GFAA+LT +E KAME K+G
Sbjct: 5 EREELDSWYQSFLPAVTTSSSNQQ------RLVHSYHNVVTGFAAKLTEKEAKAMEMKEG 58
Query: 111 FISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGM 170
F+SA + H+ TTHTPNFLGL ++ GFW SN+GKGVIIGVLDTGITP HPSF+DEGM
Sbjct: 59 FVSAHPQKVFHVKTTHTPNFLGLQQNLGFWNHSNYGKGVIIGVLDTGITPSHPSFSDEGM 118
Query: 171 PPPPAKWRGKCELVGATCNNKLIGVRNF-FCGKDGSAIDYTGHGTHTASTAAGNFVHGAN 229
PPPPAKW+GKCE G CNNKLIG RNF GK +D GHGTHTASTAAG+ V GA+
Sbjct: 119 PPPPAKWKGKCEFNGTLCNNKLIGARNFDSAGK--PPVDDNGHGTHTASTAAGSRVQGAS 176
Query: 230 IFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ 289
+ Q NGTAVG+A AHLA+Y+VC+ C ES ++AG+D A+EDG DVLSLS G G
Sbjct: 177 FYDQLNGTAVGIASSAHLAIYQVCSGFGSCEESNILAGMDTAVEDGADVLSLSLGAGSLP 236
Query: 290 FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLG 349
FY++ IA F AI++GIFVS AAGN GP +L N+APW+LTVGAST+DR I +V LG
Sbjct: 237 FYEDSIAIGAFGAIQKGIFVSCAAGNEGPFKGSLSNEAPWILTVGASTVDRSIRATVLLG 296
Query: 350 NQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA-- 407
N+ +YDG++ +Q T+ S LPL+Y A T FC P +LK VDVKGKVVLC+ G
Sbjct: 297 NKASYDGQSFYQPTNFSSTLLPLIYAGANGSDTAAFCDPGSLKDVDVKGKVVLCESGGFS 356
Query: 408 ----SGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPT 463
G +V +AGGAAMI+MNDEL G+ T + LP V++A SIKAYINSTSSP
Sbjct: 357 ESVDKGQEVKDAGGAAMIIMNDELSGNITTADFHVLPASDVTYADGLSIKAYINSTSSPM 416
Query: 464 AALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
A ++ KGTV G APQ+ FS RGPS SPGILKPDIIGPG++I+AAW VD N
Sbjct: 417 ATILFKGTVFGVPYAPQLADFSSRGPSLESPGILKPDIIGPGVDILAAWPYAVDNNRNTK 476
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
TF+++SGTSMA PHLSG+AALLKS+HP+WS AAIKSA+MTTA+ NL G PI D + P
Sbjct: 477 STFNMISGTSMATPHLSGIAALLKSSHPDWSPAAIKSAIMTTANLTNLGGTPITDDSFGP 536
Query: 584 ADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSI 643
D++A+G+G VNP+KA+DPGLVYDIQPDDYIPYLCGL Y + +V IV R V C+ SSI
Sbjct: 537 VDVFAIGSGHVNPTKADDPGLVYDIQPDDYIPYLCGLGYNNTEVGIIVQRPVTCSNSSSI 596
Query: 644 PEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKN 703
PEA+LNYPSFSIKLG SPQTY RTVTNVG KS Y +++AP+GV++ V P+ I F +
Sbjct: 597 PEAQLNYPSFSIKLGSSPQTYTRTVTNVGPFKSSYIAEIIAPQGVDVKVTPNAIPFGGGD 656
Query: 704 QKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAISFE 745
K YSVTFTRT N N +Q YL+WVS + V++PIA++FE
Sbjct: 657 PKAAYSVTFTRTANVNLPFSQGYLNWVSADHVVRNPIAVTFE 698
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537203|ref|XP_002509668.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223549567|gb|EEF51055.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/722 (58%), Positives = 522/722 (72%), Gaps = 24/722 (3%)
Query: 40 LQTYIIYVQKPEQGD------LDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGF 93
L+TYI++V KP G +++WY+SFLP A SNS NQ R+LY Y+NV+SGF
Sbjct: 40 LETYIVFVTKPPVGASKKSQVIETWYQSFLP-ARKSNS-----NQQQRILYSYRNVVSGF 93
Query: 94 AARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKGVIIGV 153
AA+LTAEE K ME K GF+SAR + LHTTH+PNFLGLH++ G W +SN+GKGVIIGV
Sbjct: 94 AAKLTAEEAKFMEEKDGFVSARPQKIFPLHTTHSPNFLGLHQNLGLWGNSNYGKGVIIGV 153
Query: 154 LDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK----DGSAIDY 209
LDTGITP HPSF+DEGMP PPAKW+GKCE G CNNKLIG R F + D D
Sbjct: 154 LDTGITPDHPSFSDEGMPSPPAKWKGKCEFNGTACNNKLIGARTFQSDEHPSGDMEPFDD 213
Query: 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGID 269
GHGTHTASTAAGNFV GA++FG ANGTAVGMAPLAHLA+YKVC+ + C ES ++A +D
Sbjct: 214 VGHGTHTASTAAGNFVDGASVFGNANGTAVGMAPLAHLAMYKVCS-DFGCSESDILAAMD 272
Query: 270 AAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPW 329
A+E+GVD+LSLS G G + F +GIA F AI+ GIFVS +AGNSGP++YTL N+APW
Sbjct: 273 TAVEEGVDILSLSLGGGSAPFSADGIAVGAFGAIQNGIFVSCSAGNSGPDNYTLSNEAPW 332
Query: 330 MLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPE 389
+LTVGASTIDR I +V+LGN E + GE+L+Q PL+YP + + C+ +
Sbjct: 333 ILTVGASTIDRSIRATVKLGNNEEFFGESLFQPQLSTQNFWPLIYPGKNGNQSAAVCAED 392
Query: 390 TLKSVDVKGKVVLCQRGA------SGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVR 443
+L+S +V+GK+VLC RG G V +AGG MIL+N+E G STL + LP
Sbjct: 393 SLESSEVEGKIVLCDRGGLVGRVEKGKVVKDAGGIGMILVNEESDGYSTLADAHVLPASH 452
Query: 444 VSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIG 503
VS++ IK YINSTSSPTA V +GTVIG +AP V +FS RGPS SPGILKPDIIG
Sbjct: 453 VSYSDGMRIKNYINSTSSPTAMFVFEGTVIGLKTAPMVSSFSSRGPSFASPGILKPDIIG 512
Query: 504 PGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMM 563
PG++I+AAW +V+ N TF+++SGTSM+CPHLSG+AALLKSAHP+WS AAIKSA+M
Sbjct: 513 PGVSILAAWPISVENKTNTKATFNMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIM 572
Query: 564 TTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYT 623
TTADTVNL G+PI+D L AD+ A GAG VNPSKA+DPGLVYDIQPDDYIPYLCGL YT
Sbjct: 573 TTADTVNLGGQPIVDERLLSADVLATGAGHVNPSKASDPGLVYDIQPDDYIPYLCGLGYT 632
Query: 624 DEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMV 683
D + IV +V+C++V SIPEA+LNYPSFSI G Q Y RTVTNVG A S YT +
Sbjct: 633 DRDITYIVQYKVKCSEVGSIPEAQLNYPSFSIVFGAKTQIYTRTVTNVGPATSSYTVSVA 692
Query: 684 APEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNAS-SAQAYLSWVSDKYTVKSPIAI 742
P GV++TV P I+F Q TYSVTFT TG + S Q YL W SD+++V+SPI++
Sbjct: 693 PPPGVDVTVTPSKIAFTQVKQTATYSVTFTNTGKGYSDPSVQGYLKWDSDQHSVRSPISV 752
Query: 743 SF 744
F
Sbjct: 753 VF 754
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426704|ref|XP_002275410.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/726 (58%), Positives = 519/726 (71%), Gaps = 22/726 (3%)
Query: 35 SDKDGLQTYIIYVQKP------EQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKN 88
++K L+TYI++V P + L+SWY+SFLP +T S NQ R+LY Y++
Sbjct: 26 AEKSMLKTYIVHVNDPVGKFSAQSEALESWYQSFLPASTES------ENQQQRLLYSYRH 79
Query: 89 VISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGFWKDSNFGKG 148
VISGFAARLT EEVKAME K GF+SA E HLHTT TP FLGLH SGFWK SNFG+G
Sbjct: 80 VISGFAARLTEEEVKAMEKKDGFVSATPEKIYHLHTTRTPGFLGLHNRSGFWKGSNFGEG 139
Query: 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNF-FCGKDGSAI 207
VIIG+LDTG+ P HPSF+DEGMP PPAKW G CE G CNNKLIG RNF I
Sbjct: 140 VIIGILDTGVYPQHPSFSDEGMPLPPAKWTGTCEFNGTACNNKLIGARNFDSLTPKQLPI 199
Query: 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAG 267
D GHGTHTASTAAGN+V AN++G A GTA G+AP AH+AVYKVC + C S ++A
Sbjct: 200 DEEGHGTHTASTAAGNYVKHANMYGNAKGTAAGIAPRAHVAVYKVCGL-LGCGGSDILAA 258
Query: 268 IDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDA 327
DAAIEDGVDVLSLS G S FYD+ +A F AIR+GIFVS +AGNSGP H+TL N+A
Sbjct: 259 YDAAIEDGVDVLSLSLGGESSPFYDDPVALGAFAAIRKGIFVSCSAGNSGPAHFTLSNEA 318
Query: 328 PWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCS 387
PW+LTV AST+DR IT + +LGN E +DGE+L+Q + SK LPLVY A + T+ +C+
Sbjct: 319 PWILTVAASTLDRSITATAKLGNTEEFDGESLYQPRNFSSKLLPLVYAGANGNQTSAYCA 378
Query: 388 PETLKSVDVKGKVVLCQRGA------SGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPN 441
P +LK++DVKGKVV+C RG G +V NAGGAAMIL N ST + LP
Sbjct: 379 PGSLKNLDVKGKVVVCDRGGDIGRTEKGVEVKNAGGAAMILANSINDSFSTFADPHVLPA 438
Query: 442 VRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDI 501
VS+A IKAY STS+P+A ++ KGT +G SAPQ+ +FS RGPS SPGILKPDI
Sbjct: 439 THVSYAAGLKIKAYTKSTSNPSATILFKGTNVGVTSAPQITSFSSRGPSIASPGILKPDI 498
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
GPG++I+AAW + + TF+++SGTSM+CPHLSGVAALLKSAHPNWS AAIKSA
Sbjct: 499 TGPGVSILAAWPAPLLNVTGSKSTFNMISGTSMSCPHLSGVAALLKSAHPNWSPAAIKSA 558
Query: 562 MMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLN 621
++TTADT+NL+ +PILD +PADL+A+GAG VNPSKANDPGL+YDI+P DYIPYLCGL
Sbjct: 559 ILTTADTLNLKDEPILDDKHMPADLFAIGAGHVNPSKANDPGLIYDIEPYDYIPYLCGLG 618
Query: 622 YTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQ 681
YT+ QV++IV R+V C+K SSIPEAELNYPSFSI LG + R VTNVGK S Y
Sbjct: 619 YTNAQVEAIVLRKVNCSKESSIPEAELNYPSFSIALGSKDLKFKRVVTNVGKPHSSYAVS 678
Query: 682 MVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASS--AQAYLSWVSDKYTVKSP 739
+ APEGV++ V+P I F QK +Y+V F G ++ + AQ +L WVS ++ KSP
Sbjct: 679 INAPEGVDVVVKPTKIHFNKVYQKKSYTVIFRSIGGVDSRNRYAQGFLKWVSATHSAKSP 738
Query: 740 IAISFE 745
I+++FE
Sbjct: 739 ISVTFE 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| UNIPROTKB|Q8H047 | 754 | OJ1263H11.8 "Subtilisin N-term | 0.973 | 0.961 | 0.455 | 2.7e-162 | |
| UNIPROTKB|Q8RVC2 | 759 | OSJNBb0005J14.3 "Putative seri | 0.919 | 0.902 | 0.474 | 8.4e-161 | |
| UNIPROTKB|Q7XPR8 | 760 | OSJNBa0065O17.13 "Os04g0559000 | 0.959 | 0.940 | 0.418 | 6.4e-147 | |
| UNIPROTKB|Q7XPR9 | 793 | OSJNBa0065O17.12 "Os04g0558900 | 0.889 | 0.836 | 0.440 | 1.9e-140 | |
| UNIPROTKB|Q0D3H9 | 781 | Os07g0685900 "cDNA clone:001-1 | 0.920 | 0.878 | 0.418 | 1.7e-137 | |
| TAIR|locus:2020245 | 775 | SDD1 "AT1G04110" [Arabidopsis | 0.722 | 0.694 | 0.416 | 9.5e-135 | |
| UNIPROTKB|Q6ESH8 | 791 | P0461B08.17 "Subtilisin-like s | 0.804 | 0.757 | 0.442 | 3e-133 | |
| UNIPROTKB|Q6ZL89 | 770 | OJ1065_B06.27 "Putative subtil | 0.932 | 0.902 | 0.394 | 3.7e-126 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.706 | 0.688 | 0.387 | 4.7e-118 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.696 | 0.685 | 0.429 | 2.4e-108 |
| UNIPROTKB|Q8H047 OJ1263H11.8 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
Identities = 346/759 (45%), Positives = 458/759 (60%)
Query: 6 LNTGAVLVSLVFIIINFSPAIIAVRASNESDKDGLQTYIIYVQKPEQGDL-DS---WYRS 61
+ T +L+++V ++ S A++AV + K+ Y++++ E G + DS W+RS
Sbjct: 1 MRTQRILLAVVVSMV-VSSAMLAVVSCARERKN----YVVHLDPREDGGVADSVELWHRS 55
Query: 62 FLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENXXX 121
FLPEAT + D R++Y Y +V+SGFAA+LT +E +AM K+G I E
Sbjct: 56 FLPEATPEAAGD----DGPRIIYSYSHVLSGFAAQLTDDEAEAMRKKEGCIRLYPEEFLP 111
Query: 122 XXXXXXPNFLGLHRSS-GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGK 180
P FLGLH + GFW S FG+GV+IG+LDTGI P HPSF D GMPPPP KW+G
Sbjct: 112 LATTHSPGFLGLHLGNDGFWSRSGFGRGVVIGLLDTGILPSHPSFGDAGMPPPPKKWKGT 171
Query: 181 CE---LVGATCNNKLIGVRNF-FCGKDGSA--IDYXXXXXXXXXXXXXNFVHGANIFGQA 234
CE + G CNNK+IG R F + +A +D NFV A++ G A
Sbjct: 172 CEFKAISGGGCNNKIIGARAFGSAAVNATAPPVDDAGHGTHTASTAAGNFVENADVRGNA 231
Query: 235 NGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXX-XXQFYDN 293
+GTA GMAP AHLA+YKVC + C +IAG+DAA++DGVDV F +
Sbjct: 232 HGTASGMAPHAHLAIYKVCTRS-RCSIMDIIAGLDAAVKDGVDVLSFSIGASPGAPFNYD 290
Query: 294 GIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQET 353
+A ATF+A+ GIFVS AAGN GP T+ N APWMLTV A T+DR I +V LGN +
Sbjct: 291 LVAIATFKAMEHGIFVSSAAGNDGPVAATVGNGAPWMLTVAAGTMDRAIRTTVTLGNGQV 350
Query: 354 YDGEALWQ-WTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA----- 407
+DGE+L+Q + ++LPLV+P S + CS TL +V GKVVLC+ +
Sbjct: 351 FDGESLYQPRNNTAGRQLPLVFPGLNGDSDSRDCS--TLVEEEVSGKVVLCESRSIVEHV 408
Query: 408 -SGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAAL 466
G V GGA MILMN + G +T + LP VS+A I +YI ST PTA++
Sbjct: 409 EQGQTVSAYGGAGMILMNKPVEGYTTFADAHVLPASHVSYAAGSKILSYIKSTPKPTASV 468
Query: 467 VMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTV--DPLANRV- 523
KGTV+G AP V FS RGP++ SPG+LKPDI GPG+NI+AAW A+ V
Sbjct: 469 TFKGTVMGSSPAPSVAFFSSRGPNKASPGVLKPDITGPGMNILAAWAPGEMHTEFADGVS 528
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+F + SGTSM+ PHLSG+AA++KS HP WS AAIKSA+MT++D + +G PI D
Sbjct: 529 LSFFMESGTSMSTPHLSGIAAIIKSLHPTWSPAAIKSAIMTSSDVADHDGVPIKDEQYRS 588
Query: 584 ADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSI 643
A Y +GAG VNPS+A DPGLVYD+ +DYI YLCGL D+ V+ I R V CAK+ +I
Sbjct: 589 ASFYTMGAGYVNPSRAVDPGLVYDLHTNDYIAYLCGLGIGDDGVKEITHRRVSCAKLKAI 648
Query: 644 PEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKN 703
EAELNYPS +KL P T HR VTNVGKA S YT + P+ V +TV P + F+
Sbjct: 649 TEAELNYPSLVVKLLSQPITVHRIVTNVGKANSVYTAVVDMPKNVAVTVHPPLLRFSRAY 708
Query: 704 QKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAI 742
+K +++VT G + + L WVSD++ V+SPI I
Sbjct: 709 EKQSFTVTVRWAGQPAVAGVEGNLKWVSDEHVVRSPIVI 747
|
|
| UNIPROTKB|Q8RVC2 OSJNBb0005J14.3 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 335/706 (47%), Positives = 430/706 (60%)
Query: 55 LDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISA 114
++ W+RSFLP+ +S + R++Y Y +V +GFAARLT EE +A+ G +
Sbjct: 52 VEEWHRSFLPQVAKLDSDSDGADGGPRIVYSYSDVFTGFAARLTDEEAEAVRATAGCLRL 111
Query: 115 RVENXXXXXXXXXPNFLGLHRSS-GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPP 173
E P FLGLH + FW S FG+GV+IG+LDTGI P HPSF D+G+ PP
Sbjct: 112 YPEEFLPLATTRSPGFLGLHLGNEAFWSHSGFGRGVVIGILDTGILPSHPSFGDDGLQPP 171
Query: 174 PAKWRGKCE---LVGATCNNKLIGVRNF-FCGKDGSA--IDYXXXXXXXXXXXXXNFVHG 227
P W+G CE + G CNNK+IG R F + SA +D NFV
Sbjct: 172 PKNWKGTCEFKAIAGGGCNNKIIGARAFGSAAVNSSAPPVDDAGHGTHTASTAAGNFVEN 231
Query: 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXX 287
AN+ G A+GTA GMAP AHLA+YKVC + C +IAG+DAA++DGVDV
Sbjct: 232 ANVRGNADGTASGMAPHAHLAIYKVCTRS-RCSIMDIIAGLDAAVKDGVDVLSFSIGASS 290
Query: 288 -XQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISV 346
QF + IA A F+A+ RGI VS AAGNSGP+ T+ N APWMLTV A T+DR I +V
Sbjct: 291 GTQFNYDPIAIAGFKAMERGIVVSCAAGNSGPDPGTVGNGAPWMLTVAAGTMDRAIRTTV 350
Query: 347 RLGNQETYDGEALWQ-WTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQ- 404
RLGN + +DGE+L+Q + + LPLVYP A T+ CS L+ +V GKVVLC+
Sbjct: 351 RLGNGDEFDGESLFQPGNNSAANPLPLVYPGADGSDTSRDCS--VLRDAEVTGKVVLCES 408
Query: 405 RGASG-----DDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINST 459
RG +G V GGA +I+MN G +T + LP VS I AY+NST
Sbjct: 409 RGLNGRIEAGQTVAAYGGAGIIVMNRAAEGYTTFADAHVLPASHVSFDAGTKIAAYVNST 468
Query: 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD-- 517
+PTA++ KGTVIG +P V FS RGPS+ SPGILKPDI GPG+NI+AAW +
Sbjct: 469 DNPTASIAFKGTVIGSSPSPAVTFFSSRGPSKASPGILKPDITGPGMNILAAWAPSESHT 528
Query: 518 PLANRV-YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPI 576
++ V +F + SGTSM+ PHLSG+AALLKS HP+WS AAIKSA+MTT+D V+ G PI
Sbjct: 529 EFSDGVGLSFFVESGTSMSTPHLSGIAALLKSLHPDWSPAAIKSAIMTTSDAVDRTGVPI 588
Query: 577 LDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQ 636
D A YA+GAG VNP+ A DPGLVYD+ DDYIPYLCGL D+ V+ I R V
Sbjct: 589 KDEQYRHATFYAMGAGYVNPALAFDPGLVYDLHADDYIPYLCGLGIGDDGVKEIAHRPVT 648
Query: 637 CAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHN 696
C+ V +I EAELNYPS + L P T +RTVTNVGK S YT + P+ V + VQP
Sbjct: 649 CSDVKTITEAELNYPSLVVNLLAQPITVNRTVTNVGKPSSVYTAVVDMPKDVSVIVQPPM 708
Query: 697 ISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAI 742
+ F + +++VT G N + A+ L WVSD++ V+SPI I
Sbjct: 709 LRFTELKEMQSFTVTVRWAGQPNVAGAEGNLKWVSDEHIVRSPIII 754
|
|
| UNIPROTKB|Q7XPR8 OSJNBa0065O17.13 "Os04g0559000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
Identities = 319/763 (41%), Positives = 440/763 (57%)
Query: 19 IINFSPAIIAVRASNESDKDGLQTYIIYVQKPEQ------GDLDSWYRSFLPE-ATISNS 71
+++F P + + + E+ D + T+I++VQ E D WY++FLPE + ++
Sbjct: 8 LLSFLPFVFVLAIAVEATGDEIGTFIVHVQPQESHVAATADDRKEWYKTFLPEDGRLVHA 67
Query: 72 SDHDRNQ-SSRMLYFYKNVISGFAARLTA--EEVKAMETKKGFISARVENXXXXXXXXXP 128
H + ++R+ + +S ++A ++ ++T P
Sbjct: 68 YHHVASGFAARLTRQELDAVSAMPGFVSAVPDQTHTLQT--------THTPQFLGLSAPP 119
Query: 129 NFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGAT- 187
G SS S G GVI+GV+DTG+ P HPSF+D GMPPPPAKW+G C+ G +
Sbjct: 120 PPQGKRWSSSSHGGSGAGAGVIVGVIDTGVFPDHPSFSDAGMPPPPAKWKGHCDFNGGSV 179
Query: 188 CNNKLIGVRNFFCGKDGSA---------IDYXXXXXXXXXXXXXNFVHGANIFGQANGTA 238
CNNKLIG R F S+ +D V GA++ GQ G A
Sbjct: 180 CNNKLIGARTFIANATNSSSSYGERLPPVDDVGHGTHTASTAAGAAVPGAHVLGQGLGVA 239
Query: 239 VGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXXQFYDNGIAKA 298
G+AP AH+AVYKVC PN C S ++AG+DAAI DG DV F++N +A
Sbjct: 240 AGIAPHAHVAVYKVC-PNESCAISDILAGVDAAIADGCDVISISIGGPSVPFHENPVAVG 298
Query: 299 TFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEA 358
TF A+ +G+FVS+AAGN+GPN +++NDAPWMLTV AST+DR I +VRLGN +DGE+
Sbjct: 299 TFGAMEKGVFVSMAAGNAGPNVSSVINDAPWMLTVAASTMDRSIRTTVRLGNGLYFDGES 358
Query: 359 LWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS--------GD 410
L+Q D PS PLVY A + FC +L DV+GK+V+C+ G G
Sbjct: 359 LYQPNDSPSTFYPLVYAGASGKPSAEFCGNGSLDGFDVRGKIVVCEFGGGPNITRIIKGA 418
Query: 411 DVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKG 470
V +AGGA MIL N G +TL + + LP V + +IKAYINST++P A ++ +G
Sbjct: 419 VVQSAGGAGMILPNHFPEGYTTLAEAHVLPASHVDYVAGLAIKAYINSTANPVAQILPRG 478
Query: 471 TVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVY---TFD 527
TV+G AP + FS RGPS +PGILKPDI GPG+N++AAW V P + +V+ TF+
Sbjct: 479 TVLGTTPAPAMAFFSSRGPSVQNPGILKPDITGPGVNVLAAWPFQVGPSSAQVFPGPTFN 538
Query: 528 IVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLY 587
I+SGTSM+ PHLSGVAA +KS HP+WS AAIKSA+MTTAD + G ILD R PA+ +
Sbjct: 539 IISGTSMSTPHLSGVAAFIKSRHPHWSPAAIKSAIMTTADITDRSGNQILDEQRAPANFF 598
Query: 588 AVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAE 647
A GAG VNP +A DPGLVYDI P DY+ YLCGL YT ++V I R V C+ V++IPE +
Sbjct: 599 ATGAGHVNPERAADPGLVYDIAPCDYVGYLCGL-YTSQEVSVIARRPVNCSAVAAIPEHQ 657
Query: 648 LNYPSFSIKL-----GYSPQTYHRTVTNVGKAKS-FYTRQMVAPEGVEITVQPHNISFAA 701
LNYPS S++ P RT NVG+ S +Y + V + V P + F
Sbjct: 658 LNYPSISVRFPRAWNSSEPVLVRRTAKNVGEVPSEYYAAVDMLDTTVTVRVFPRTLRFTG 717
Query: 702 KNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAISF 744
NQ+ ++V G A Q + WVS+ +TV+SP++++F
Sbjct: 718 VNQEKDFTVVVW-PGQGGARVVQGAVRWVSETHTVRSPVSVTF 759
|
|
| UNIPROTKB|Q7XPR9 OSJNBa0065O17.12 "Os04g0558900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
Identities = 308/699 (44%), Positives = 410/699 (58%)
Query: 73 DHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENXXXXXXXXXPNFLG 132
+ D + SR++Y Y+NV++GFAARLT EEV+ M FI A E P LG
Sbjct: 85 ERDPSSVSRLIYSYRNVVNGFAARLTPEEVEEMSKNDWFIRADPEKTYQLQTTHTPQLLG 144
Query: 133 LH---RSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCN 189
L R G W SN G+G+IIG+LD GI GHPSF+ GM PPPAKW G+C+ CN
Sbjct: 145 LMGGARRGGVWNTSNMGEGIIIGILDDGIYAGHPSFDGAGMKPPPAKWSGRCDFNKTVCN 204
Query: 190 NKLIGVRNFFCG--------KDGSA-IDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVG 240
NKLIG R++F +D I+ +FV GAN+ G A GTA G
Sbjct: 205 NKLIGARSYFESAKWKWKGLRDPVLPINEGQHGTHTSSTAAGSFVPGANVSGYAVGTAGG 264
Query: 241 MAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXX-QFYDNGIAKAT 299
MAP AH+A Y+VC C ++A +D A+EDGVD+ F D+ ++
Sbjct: 265 MAPRAHIAFYQVCYVEKGCDRDDILAAVDDALEDGVDILSLSLGDEQAGDFSDDPVSLGG 324
Query: 300 FEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEAL 359
+ A G+ VS A GN+GP T+VN+APW++TVGA T DR +V+LG+ + DGE+L
Sbjct: 325 YSAAMHGVLVSAAGGNTGPGPSTVVNEAPWVITVGAGTTDRRFVATVKLGSGVSLDGESL 384
Query: 360 WQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRG-----ASGDDVLN 414
+ D ++ PLV+ D + TT L++++V GK+++C G A VL
Sbjct: 385 SEPKDFGAEMRPLVH-DVGDGMCTT---ESVLRAMNVTGKIIICDAGGDVSVAKAKLVLR 440
Query: 415 AGGAAMILMNDELFGDSTLIQR-NSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVI 473
+G A MI++ +++G S ++ R + LP V++ + + IKAYI ST SPTA + KGTV
Sbjct: 441 SGAAGMIVIAPQVYG-SVIVPRPHVLPTVQMPFMIGQKIKAYIRSTPSPTANFIFKGTVF 499
Query: 474 GGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPL--ANRVYT-FDIVS 530
S P FS RGP+R S GILKPDIIGPG+NI+A D A V FDI S
Sbjct: 500 KAKS-PVAAPFSSRGPNRRSRGILKPDIIGPGVNILAGVPKIEDLALGAEEVMPKFDIKS 558
Query: 531 GTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD-TVNLEGKPILDCTRLPADLYAV 589
GTSMA PH+SGVAAL+K+AHP WS AAIKSAMMTTAD T NL KPI D PA YA+
Sbjct: 559 GTSMAAPHISGVAALIKNAHPTWSPAAIKSAMMTTADYTDNLR-KPITDVDGAPATYYAI 617
Query: 590 GAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDR--EVQCAKVSSIPEAE 647
GAG VN KA DPGLVY++ DYIPYLCGL Y D++V SI+ V+CAK+ + + +
Sbjct: 618 GAGYVNARKAIDPGLVYNLSSLDYIPYLCGLGYKDQKVNSIIHPGPAVECAKMPKVDQKD 677
Query: 648 LNYPSFSIKLGYSPQ--TYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQK 705
LNYPS + L P + +R+ TNVG A S Y ++ P + + V P + F A N+
Sbjct: 678 LNYPSITAVLDMEPYEVSINRSATNVGAATSTYAVEVDVPATLAVEVNPAKLEFRALNEV 737
Query: 706 VTYSVTF-TRTGNTNASSAQAYLSWVSDK-YTVKSPIAI 742
+ Y+VT T +G AS+ + L WVS K Y V+SPI +
Sbjct: 738 LNYTVTVKTASGKAPASTIEGQLKWVSGKKYVVRSPILV 776
|
|
| UNIPROTKB|Q0D3H9 Os07g0685900 "cDNA clone:001-131-E09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 306/732 (41%), Positives = 426/732 (58%)
Query: 39 GLQTYIIYVQKPE---QGDLDS----WYRSFLPEATISNSSDHDRNQSSRMLYFYKNVIS 91
G TYI++V+ P GD + W+ SFLP + ++ S D R +++ Y +S
Sbjct: 43 GRATYIVFVEPPPPLGHGDGEDDHCRWHESFLPLSELAGSDDEPR-----LVHSYTEAVS 97
Query: 92 GFAARLTAEEVKAMETKKGFISARVENXXXXXXXXXPNFLGLHRSSGFWKDSNFGKGVII 151
GFAARLT E+ A+ K GF+ A + P FLGL + +G W+DS +GKGVI+
Sbjct: 98 GFAARLTGGELDAVSKKPGFVRAIPDRTLQLMTTHTPEFLGLRKDAGLWRDSGYGKGVIV 157
Query: 152 GVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYXX 211
GVLDTGI HPSF+D G+PPPPA+W+G C A CNNKLIGV++F G D D
Sbjct: 158 GVLDTGIDSSHPSFDDRGVPPPPARWKGSCRDTAARCNNKLIGVKSFIPG-DNDTSDGVG 216
Query: 212 XXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAA 271
NFV GA + G GT G+AP AH+A+Y+VC C ESA++ GID A
Sbjct: 217 HGTHTASTAAGNFVDGAAVNGLGVGTVAGIAPGAHIAMYRVCTVEG-CTESALLGGIDEA 275
Query: 272 IEDGVDVXXXXXXXXXXQFYDNG-IAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWM 330
I+DGVDV YD +A F A+ +GI V AAGN+GP TL N+APWM
Sbjct: 276 IKDGVDVLSISLGSSFAADYDKDPLAIGAFSAVSKGIVVVCAAGNNGPAFATLSNEAPWM 335
Query: 331 LTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPET 390
+TV AS++DR + RLG+ DGEAL Q ++ K PL Y + C E
Sbjct: 336 VTVAASSVDRRFSAPTRLGDGRVIDGEALDQASNSSGKAYPLSY----SKEQAGLC--EI 389
Query: 391 LKSVDVKGKVVLCQRGASG----DDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSH 446
+ D+KGK+VLC+ S D++ G A ++L+N +L G +T+++ V+V+
Sbjct: 390 ADTGDIKGKIVLCKLEGSPPTVVDNIKRGGAAGVVLINTDLLGYTTILRDYGSDVVQVTV 449
Query: 447 AVSESIKAYINSTSSPTAALVMKG-TVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPG 505
A + Y S + P A + K TV+G AP + AFS RGPS ++ GILKPDI+ PG
Sbjct: 450 ADGARMIEYAGSRN-PVATITFKNRTVLGVRPAPTLAAFSSRGPSFLNVGILKPDIMAPG 508
Query: 506 LNIIAAWKTTV--DPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMM 563
LNI+AAW ++V A +F+++SGTSMA PH+SGVAAL+KS HP+WS AAIKSA++
Sbjct: 509 LNILAAWPSSVARTDAAAAPPSFNVISGTSMATPHVSGVAALVKSVHPDWSPAAIKSAIL 568
Query: 564 TTADTVNLEGKPILDCTRLPADLYA---VGAGQVNPSKANDPGLVYDIQPDDYIPYLCGL 620
TT+D V+ G PILD L+ GAG VNP++A DPGLVYDI +Y +LC L
Sbjct: 569 TTSDEVDNTGGPILDEQHNKTMLFGPFNTGAGHVNPTRAADPGLVYDIGVAEYAGFLCTL 628
Query: 621 NYTDEQVQSIVDRE--VQ-CAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSF 677
E V I+ R +Q C + + ++ LNYPS +++L +P T +RTVTNVG A+S
Sbjct: 629 --VGEYVLPIIVRNSSLQSCRDLPRVGQSHLNYPSITVELEKTPFTVNRTVTNVGPAEST 686
Query: 678 YTRQ--MVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGN-TNASSAQAYLS----WV 730
YT + A ++++V P + F+ +K T++VT + G T A+ A A L WV
Sbjct: 687 YTANVTLAAETSLKLSVSPETLVFSKAGEKKTFAVTVS--GRFTKAAQAVAVLEGSLRWV 744
Query: 731 SDKYTVKSPIAI 742
S ++ V+SP+ +
Sbjct: 745 SPEHVVRSPVVL 756
|
|
| TAIR|locus:2020245 SDD1 "AT1G04110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
Identities = 234/562 (41%), Positives = 324/562 (57%)
Query: 205 SAIDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAV 264
SA D + V AN+ G G A GMAP AH+AVYKVC N C S +
Sbjct: 215 SARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNG-CYSSDI 273
Query: 265 IAGIDAAIEDGVDVXXXXXXXXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV 324
+A ID AI+D VDV YD+ IA TF A+ RGI V AAGN+GP ++
Sbjct: 274 LAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVA 333
Query: 325 NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS--KRLPLVYPDARNHST 382
N APW+ T+GA T+DR VRL N + GE+L+ I + + + ++Y + +
Sbjct: 334 NTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGS 393
Query: 383 TTFCSPETLKSVDVKGKVVLCQRGASG-----DDVLNAGGAAMILMNDELFGDSTLIQRN 437
FC +L +++GK+V+C RG +G + V AGG AMIL N E+ + I +
Sbjct: 394 E-FCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVH 452
Query: 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGIL 497
LP + + S +KAY+N+T P A ++ GTVIG AP+V FS RGPS +P IL
Sbjct: 453 LLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSIL 512
Query: 498 KPDIIGPGLNIIAAWKTTVDPLA----NRVYTFDIVSGTSMACPHLSGVAALLKSAHPNW 553
KPD+I PG+NIIAAW + P +R F ++SGTSM+CPH+SG+ AL++SA+PNW
Sbjct: 513 KPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNW 572
Query: 554 SHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDY 613
S AAIKSA+MTTAD + +GK I D + PA ++A+GAG VNP KA +PGLVY+IQP DY
Sbjct: 573 SPAAIKSALMTTADLYDRQGKAIKDGNK-PAGVFAIGAGHVNPQKAINPGLVYNIQPVDY 631
Query: 614 IPYLCGLNYTDEQVQSIVDREVQCAKV-SSIPEAELNYPSFSI--KLGYSPQTYHRTVTN 670
I YLC L +T + +I + V C + P LNYPS ++ K G + + R VTN
Sbjct: 632 ITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTN 691
Query: 671 VGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFT----RTGNTNASSAQAY 726
VG S Y+ + APEG+++ V P + F +Q ++Y V F G AS AQ
Sbjct: 692 VGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQ 751
Query: 727 LSWVSDK---YTVKSPIAISFE 745
L+WV+ V+SPI+++ +
Sbjct: 752 LTWVNSHNLMQRVRSPISVTLK 773
|
|
| UNIPROTKB|Q6ESH8 P0461B08.17 "Subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 281/635 (44%), Positives = 379/635 (59%)
Query: 138 GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRN 197
G W SN G+G+IIGVLD GI GHPSF+ GM PPPA+W+G+C+ + CNNKLIG R+
Sbjct: 147 GLWNRSNMGEGMIIGVLDDGIAAGHPSFDAAGMGPPPARWKGRCDFNSSVCNNKLIGARS 206
Query: 198 FF-------CGKDGSAID-YXXXXXXXXXXXXX-NFVHGANIFGQANGTAVGMAPLAHLA 248
FF G D + Y NFV GAN+ G GTA GMAP AHLA
Sbjct: 207 FFESAKWKWRGVDDPVLPVYELAHGTHTSSTAGGNFVPGANVMGNGFGTAAGMAPRAHLA 266
Query: 249 VYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXX-QFYDNGIAKATFEAIRRGI 307
+Y+VC+ + C ++A +D A+++GVDV F + +A + AI RG+
Sbjct: 267 LYQVCSEDRGCDRDDILAAMDDAVDEGVDVLSISLGDDEAGDFAGDPVALGAYTAIMRGV 326
Query: 308 FVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367
FVS +AGN+GPN T+ N+APW+LTV AST R +V+LG +DGEAL+Q + PS
Sbjct: 327 FVSSSAGNNGPNPLTVSNEAPWLLTVAASTTGRKFVATVKLGTGVEFDGEALYQPPNFPS 386
Query: 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS------GDDVLNAGGAAMI 421
+ PL+ D R T CS E L V GK+V+C +G + G + +AG A M+
Sbjct: 387 TQWPLI-ADTRGDGT---CSDEHLMKEHVAGKLVVCNQGGNLTGLRKGSYLHDAGAAGMV 442
Query: 422 LMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQV 481
L+ E G + + LP ++ + E +KAY+ ST SPTAAL+ KGTV G P+V
Sbjct: 443 LIGPEFMGSMVQPKSHILPVAQIVYLSGEELKAYMKSTKSPTAALIYKGTVFGDRKTPEV 502
Query: 482 VAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTV------DPLANRVYTFDIVSGTSMA 535
FS RGPSR + GILKPDI GPG+NIIA T +PLA + FDI+SGTSMA
Sbjct: 503 APFSSRGPSRQNQGILKPDITGPGVNIIAGVPVTSGLATPPNPLAAK---FDIMSGTSMA 559
Query: 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVN 595
PHLSG+AAL+K AHP WS AAIKSAMMTTADT++ +PI D A+++ +GAG +N
Sbjct: 560 APHLSGIAALIKKAHPKWSPAAIKSAMMTTADTLDRRRRPITDQKGNNANMFGLGAGFIN 619
Query: 596 PSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDR--EVQCAKVSSIPEAELNYPSF 653
P+KA +PGLVYD+ DY+P+LCGL Y+D +V SI+ V C ++ ++ + +LNYPS
Sbjct: 620 PTKAMNPGLVYDLTAQDYVPFLCGLGYSDHEVSSIIHPAPSVSCKQLPAVEQKDLNYPSI 679
Query: 654 SIKLGYSPQ--TYHRTVTNVG-KAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSV 710
++ L P + R VTNVG + K+ Y ++ P V +TV P + F NQ ++V
Sbjct: 680 TVFLDREPYVVSVSRAVTNVGPRGKAVYAAKVDMPATVLVTVTPDTLRFKKVNQVRKFTV 739
Query: 711 TF--TRTGNTNASSAQAYLSWVSDKYTVKSPIAIS 743
TF G A+ L WVS + V+SPI +S
Sbjct: 740 TFRGANGGPMKGGVAEGQLRWVSPDHVVRSPIVVS 774
|
|
| UNIPROTKB|Q6ZL89 OJ1065_B06.27 "Putative subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
Identities = 293/743 (39%), Positives = 410/743 (55%)
Query: 34 ESDKDGLQ-TYIIYVQ---KPEQ-GDLDSWYRSFL----PEATISNSSDHDRNQSSRMLY 84
E D L TYI++ KP + L+ WY S + P A +N++ + R+LY
Sbjct: 35 EHKPDQLSNTYIVHANHLLKPSRFATLEHWYISMVATHSPRAA-TNATAAAAAVAGRILY 93
Query: 85 FYKNVISGFAARLTAEEVKAMET-KKGFISARVENXXXXXXXXXPNFLGLHRSSGFWKDS 143
Y V+ GFA RL A+E +++ G + P F+GL G W+D+
Sbjct: 94 TYDTVMHGFAVRLAADEARSLSRGAPGVTAVHQARMYYPQTTRSPGFIGLDPEYGLWRDT 153
Query: 144 NFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGAT-CNNKLIGVRNFFCGK 202
FG GVIIGV+D+GI P +PSFND G+ W+G C +GA CNNKL+G ++F +
Sbjct: 154 EFGDGVIIGVIDSGIWPENPSFNDSGLAAVRRSWKGGCVGLGARLCNNKLVGAKDFSAAE 213
Query: 203 DGSAI---DYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
G A D + VHGA +F A GTA G+AP A +A+YK C N C
Sbjct: 214 YGGASSPRDDVGHGTHVASTAAGSEVHGAGLFMFARGTARGVAPKARIAMYK-CGGNWGC 272
Query: 260 PESAVIAGIDAAIEDGVDVXXXXXXXXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
++A+IAGIDAA++DGVD+ FY++ +A ATF A R G+FV++A GNSGP
Sbjct: 273 SDAAIIAGIDAAVKDGVDIISISLGGFPIPFYEDSLAIATFGAQREGVFVALAGGNSGPR 332
Query: 320 HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379
YT+ N APWM TVGA +DR ++ LGN E G++L+ + PLV D+
Sbjct: 333 PYTVTNVAPWMTTVGAGAVDRLFPANLTLGNGEVLVGQSLYTKMATGTTMAPLVLLDS-- 390
Query: 380 HSTTTFCSPETLKSVDVKGKVVLCQRGA-SGDDVLNAGGAAMILMN-DELFGDSTLIQRN 437
C +L V GK+V+C G G + NAGGA ++ M +E GD +
Sbjct: 391 ------CDEWSLSPDVVMGKIVVCLAGVYEGMLLQNAGGAGLVSMQGEEWHGDGVVADAF 444
Query: 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMK-GTVIGGGSAPQVVAFSGRGPSRISPGI 496
+LP + +S++ +E + Y S +SP A+ TV G AP V FS RGP+R+ P +
Sbjct: 445 TLPALTLSYSKAEKLMDYFESAASPVASFSFACETVTGENRAPTAVGFSSRGPNRVVPEL 504
Query: 497 LKPDIIGPGLNIIAAWKTTVD-PLAN---RVYTFDIVSGTSMACPHLSGVAALLKSAHPN 552
LKPD++ PGLNI+AAW + + N R F+I+SGTSMACPH +GVAAL+K H +
Sbjct: 505 LKPDVLAPGLNILAAWPRDIPVSMLNMDTRRSEFNILSGTSMACPHAAGVAALIKKRHGD 564
Query: 553 WSHAAIKSAMMTTADTVNLEGKPILD--------CTRLPADLYAVGAGQVNPSKANDPGL 604
W+ A I+SAMMTTA T++ G+ I D T A A GAG V P A DPGL
Sbjct: 565 WTPAMIRSAMMTTAATLDNTGRDITDEGVQEAANATFTSATPLAAGAGHVRPQLAVDPGL 624
Query: 605 VYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIP---EAELNYPSFSIKLGYSP 661
VYD +DY+ +LC LNYT EQ++ V CA ++P A LNYPSF + S
Sbjct: 625 VYDAGVEDYVDFLCSLNYTVEQLRVFVPDTAGCAP--ALPGGGPANLNYPSFVVAFNGST 682
Query: 662 Q--TYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRT--GN 717
+ T RTVT V + Y+ + AP GV++TV+P + F KN++ +Y+V FT G+
Sbjct: 683 RVRTLTRTVTKVYEKPETYSVAVSAPAGVKVTVRPATLEFKEKNEEKSYTVEFTSVAGGH 742
Query: 718 TNASSAQAYLSWVSDKYTVKSPI 740
N S ++SW + K+ V+SP+
Sbjct: 743 VNQSWDFGHISWENRKHQVRSPV 765
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 216/557 (38%), Positives = 305/557 (54%)
Query: 188 CNNKLIGVRNFFCGKDGSAI-------------DYXXXXXXXXXXXXXNFVHGANIFGQA 234
CN K+IG R F G+ + I D A++ G A
Sbjct: 168 CNRKIIGARFFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYA 227
Query: 235 NGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXX---XXQFY 291
+G A G+AP A +A YKVC + C +S ++A DAA+ DGVDV +Y
Sbjct: 228 SGVAKGVAPKARIAAYKVCWKDSGCLDSDILAAFDAAVRDGVDVISISIGGGDGITSPYY 287
Query: 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQ 351
+ IA ++ A +GIFVS +AGN GPN ++ N APW+ TVGASTIDR LG+
Sbjct: 288 LDPIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGDG 347
Query: 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS--- 408
G +L+ + + P+VYP S+ + C TL V+GK+V+C RG+S
Sbjct: 348 HRLRGVSLYAGVPLNGRMFPVVYPGKSGMSSASLCMENTLDPKQVRGKIVICDRGSSPRV 407
Query: 409 --GDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAAL 466
G V AGG MIL N G+ + + +P V + IKAY +S +P A++
Sbjct: 408 AKGLVVKKAGGVGMILANGASNGEGLVGDAHLIPACAVGSNEGDRIKAYASSHPNPIASI 467
Query: 467 VMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA----NR 522
+GT++G AP + +FSGRGP+ +SP ILKPD+I PG+NI+AAW V P R
Sbjct: 468 DFRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTGLPSDPR 527
Query: 523 VYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILD-CTR 581
F+I+SGTSMACPH+SG AALLKSAHP+WS A I+SAMMTT + V+ + ++D T
Sbjct: 528 KTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNRSLIDESTG 587
Query: 582 LPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVS 641
A Y G+G +N +A +PGLVYDI DDYI +LC + Y + +Q I V+C
Sbjct: 588 KSATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQVITRTPVRCPTTR 647
Query: 642 SIPEAELNYPSFSI-----KLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHN 696
LNYPS + + G +T RT TNVG+A++ Y ++ +P GV +TV+P
Sbjct: 648 KPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRARIESPRGVTVTVKPPR 707
Query: 697 ISFAAKNQKVTYSVTFT 713
+ F + ++ +Y+VT T
Sbjct: 708 LVFTSAVKRRSYAVTVT 724
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 229/533 (42%), Positives = 323/533 (60%)
Query: 225 VHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXXXXXX 284
V GA++ G A+GTA GMAP A +AVYKVC C S ++A ID AI D V+V
Sbjct: 225 VEGASLLGYASGTARGMAPRARVAVYKVCWLGG-CFSSDILAAIDKAIADNVNVLSMSLG 283
Query: 285 XXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITI 344
+Y +G+A F A+ RGI VS +AGN+GP+ +L N APW+ TVGA T+DR
Sbjct: 284 GGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPA 343
Query: 345 SVRLGNQETYDGEALWQWTDIPSKRLPLVYP-DARNHSTTTFCSPETLKSVDVKGKVVLC 403
LGN + + G +L++ +P K LP +Y +A N + C TL VKGK+V+C
Sbjct: 344 LAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMC 403
Query: 404 QRGAS-----GDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINS 458
RG + GD V AGG MIL N G+ + + LP V + I+ Y+ +
Sbjct: 404 DRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTT 463
Query: 459 TSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP 518
+PTA++ + GTV+G +P V AFS RGP+ I+P ILKPD+I PG+NI+AAW P
Sbjct: 464 DPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGP 523
Query: 519 --LAN--RVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGK 574
LA+ R F+I+SGTSM+CPH+SG+AALLKS HP WS AAI+SA+MTTA +GK
Sbjct: 524 TGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGK 583
Query: 575 PILD-CTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDR 633
P+LD T P+ + GAG V+P+ A +PGL+YD+ +DY+ +LC LNYT Q++S+ R
Sbjct: 584 PLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRR 643
Query: 634 EVQCAKVSSIPEAELNYPSFSIKL-GYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITV 692
C S A+LNYPSF++ + G Y RTVT+VG A ++ + GV+I+V
Sbjct: 644 NYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISV 703
Query: 693 QPHNISFAAKNQKVTYSVTFT-RTGNTNASSAQAYLSWVSDKYTVKSPIAISF 744
+P ++F N+K +Y+VTFT + + S++ + W K+ V SP+AIS+
Sbjct: 704 EPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65351 | SUBL_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4164 | 0.9691 | 0.9537 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 745 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-97 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-29 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-25 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 5e-25 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-23 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 6e-22 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-21 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-19 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-18 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-18 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-18 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 7e-17 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-13 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 5e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-12 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 2e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 8e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-10 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-10 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 4e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-09 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 9e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-07 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 8e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-06 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 2e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 9e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-05 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 3e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 6e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 9e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 1e-04 | |
| cd07491 | 247 | cd07491, Peptidases_S8_7, Peptidase S8 family doma | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-04 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 8e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.001 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.002 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 2e-97
Identities = 120/236 (50%), Positives = 143/236 (60%), Gaps = 17/236 (7%)
Query: 120 LHLHTTHTPNFLGLHRSSG--FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKW 177
LHTT +P+FLGL + G +N G+G+IIGVLDTGI P HPSF D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 178 RGKCEL----VGATCNNKLIGVRNFFCGKD-----------GSAIDYTGHGTHTASTAAG 222
G C +CNNKLIG R F G D S DY GHGTHTASTAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 223 NFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLS 282
N V A++ G A GTA G+AP A +AVYKVC P+ C S ++A ID AI DGVDV+S S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 283 FGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTI 338
G G Y++ IA A A+ GIFV+ +AGNSGP T+ N APW+ TV AST+
Sbjct: 181 IGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 76/195 (38%), Positives = 99/195 (50%), Gaps = 14/195 (7%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
GKGV + V+DTGI HP G P K +G + V + + D S
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPND--KVKGGYDFVD-DDYDPMDTRPYPSPLGDAS 57
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
A D TGHGTH A AGN G GT G+AP A L YKV P +I
Sbjct: 58 AGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVII 109
Query: 266 AGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVN 325
A I+ A++DG+DV++LS G ++ D A A A++ G+ V AAGNSGP YT+ +
Sbjct: 110 AAIEQAVDDGMDVINLSLGSSVNGPDDPD-AIAINNAVKAGVVVVAAAGNSGPAPYTIGS 168
Query: 326 --DAPWMLTVGASTI 338
AP +TVGAST+
Sbjct: 169 PATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 495 GILKPDIIGPGLNIIAAW-KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNW 553
LKPDI PG++I+AAW DP R F +SGTSMA PH++GVAALLKSAHP+W
Sbjct: 234 STLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 554 SHAAIKSAMMTTAD 567
S AAIKSA+MTTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPL 519
++P+A V TV A V S RGP S +KPDI+ PG++I++
Sbjct: 171 TAPSAITVGASTVADVAEADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTA------- 222
Query: 520 ANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDC 579
+ +SGTSMA PH++G AALLK AHP+WS A IK+A+M TA +
Sbjct: 223 PGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGV---- 278
Query: 580 TRLPADLYAVGAGQVNPSKA 599
+ GAG+V+ +A
Sbjct: 279 ---VYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 5e-25
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 37/200 (18%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
GKG+ + VLDTGI HP F+ + N G+ +
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRI--------------------IRFADFVNTVNGRT-T 39
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
D GHGTH A AG+ +NG G+AP A+L KV + + ES +I
Sbjct: 40 PYDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVGVKVLDDSGSGSESDII 92
Query: 266 AGIDAAIED----GVDVLSLSFGLGLSQFY-DNGIAKATFEAIRRGIFVSIAAGNSGPNH 320
AGID +E+ + V++LS G Y ++ + +A GI V +AAGNSGP
Sbjct: 93 AGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGP 152
Query: 321 YTLVND---APWMLTVGAST 337
T + +P ++TVGA
Sbjct: 153 GT-ITSPGNSPKVITVGAVD 171
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 7e-23
Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAI 207
GV + V+DTGI HP ++G NF +
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL-----------------------NIVGGANFTGDDNNDYQ 37
Query: 208 DYTGHGTHTASTAAGNFVHGANIFGQANGT-AVGMAPLAHLAVYKVCNPNVYCPESAVIA 266
D GHGTH A A NG VG+AP A L KV N + S +IA
Sbjct: 38 DGNGHGTHVAGIIAA----------LDNGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIA 87
Query: 267 GIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
GI+ AIE+G+D++++S G + +A +A GI V AAGNSG
Sbjct: 88 GIEWAIENGMDIINMSLG---GPSDSPALREAIKKAYAAGILVVAAAGNSGNG 137
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 6e-22
Identities = 57/200 (28%), Positives = 76/200 (38%), Gaps = 41/200 (20%)
Query: 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208
V + V+DTG+ P HP + E D
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGP------------------TDPDD 42
Query: 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGI 268
GHGTH A A + NG VG+AP A L KV + + S + A I
Sbjct: 43 GNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAI 93
Query: 269 DAAIED-GVDVLSLSFGLGLSQFYDNGIAKATFEAIRR-----GIFVSIAAGNSGPNHYT 322
D A D G DV++LS G + + A EAI G+ V AAGN GP+ T
Sbjct: 94 DYAAADQGADVINLSLGG-----PGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGT 148
Query: 323 LVN---DAPWMLTVGASTID 339
+ +P ++ VGA D
Sbjct: 149 NIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-21
Identities = 53/128 (41%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 345 SVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTT--FCSPETLKSVDVKGKVVL 402
V LGN +T G++L K PLVY A N C P +L VKGK+VL
Sbjct: 1 VVTLGNGKTIVGQSL---YPGNLKTYPLVYKSA-NSGDVDASLCLPGSLDPSKVKGKIVL 56
Query: 403 CQRGAS------GDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456
C RG + GD V AGGA MIL ND G + + LP V V + +I +YI
Sbjct: 57 CDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 457 NSTSSPTA 464
NSTS+PTA
Sbjct: 117 NSTSNPTA 124
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 5e-19
Identities = 59/173 (34%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 145 FGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG 204
GKGV + V+DTGI HP+ G P K G + VG + V D
Sbjct: 11 TGKGVKVAVVDTGIDYTHPALG--GCFGPGCKVAGGYDFVGDDYDGTNPPV------PDD 62
Query: 205 SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAV 264
+D GHGTH A A N N +G G+AP A L Y+V + E +
Sbjct: 63 DPMDCQGHGTHVAGIIAAN----PNAYG-----FTGVAPEATLGAYRVFGCSGSTTEDTI 113
Query: 265 IAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
IA A EDG DV++ S G G S + ++ A + G+ V+IAAGN G
Sbjct: 114 IAAFLRAYEDGADVITASLG-GPSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 481 VVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLS 540
+ FS RGP G +KPD++ PG NI++ +P A + +SGTSMA PH+S
Sbjct: 180 ISYFSSRGP--TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVS 237
Query: 541 GVAALLKSAHPNWSHAAIKSAMMTTAD 567
G ALL A+P + +K + TA
Sbjct: 238 GAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 60/204 (29%), Positives = 79/204 (38%), Gaps = 49/204 (24%)
Query: 142 DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG 201
DS+ G GV + VLDTGI H F G A W +F
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEF--GGR----AIW-----------------GADFV-- 54
Query: 202 KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPE 261
D GHGTH A T G +G A + +AV KV + N
Sbjct: 55 GGDPDSDCNGHGTHVAGTVGG------KTYGVAKKANL-------VAV-KVLDCNGSGTL 100
Query: 262 SAVIAGIDAAIEDGVD-----VLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNS 316
S +IAG++ D V ++S G G S D +A A+ G+ V +AAGNS
Sbjct: 101 SGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVAA----AVNAGVVVVVAAGNS 156
Query: 317 GPNHYTLVN-DAPWMLTVGASTID 339
+ AP +TVGA+ D
Sbjct: 157 NQDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 35/190 (18%)
Query: 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAI 207
GV + VLDTG+ HP A+W + +
Sbjct: 1 GVTVAVLDTGVDADHPDLAGR-----VAQWA----------DFDENRRIS-----ATEVF 40
Query: 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAG 267
D GHGTH + T G G A G +G+AP A L KV + + S +IAG
Sbjct: 41 DAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAG 90
Query: 268 IDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR--GIFVSIAAGNSGPNHYTLVN 325
++ A+E DV+S+S LG + + ++ + +A EA+ G ++AGN G
Sbjct: 91 MEWAVEKDADVVSMS--LGGTYYSEDPLEEA-VEALSNQTGALFVVSAGNEGHGTSGSPG 147
Query: 326 DAPWMLTVGA 335
A L+VGA
Sbjct: 148 SAYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-17
Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCE--------LVGATCNNKLIGVRN 197
G+G+++ V+D+G+ P H +F AK+ + E G N K+ N
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYN 67
Query: 198 FFCGKD--GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKV-CN 254
+ D D + HG H A AGN N G G+AP A L KV N
Sbjct: 68 YADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEG-----IKGVAPEAQLLAMKVFSN 122
Query: 255 PNV-YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKAT---FEAIRR----G 306
P + A I+ A++ G DV+++S G G +AI+R G
Sbjct: 123 PEGGSTYDDAYAKAIEDAVKLGADVINMSLG------STAGFVDLDDPEQQAIKRAREAG 176
Query: 307 IFVSIAAGNSG----PNHYTLVNDAPWMLTVGASTIDRGITISV 346
+ V +AAGN G L + P TVG+ ++V
Sbjct: 177 VVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADD-VLTV 219
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 36/196 (18%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G GV + V+DTG+ P HP K + +F D
Sbjct: 27 GSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFV-DNDSD 63
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVYCPESAV 264
A+D GHGTH A A N NGT V G+AP A + KV + N + +
Sbjct: 64 AMDDNGHGTHVAGIIAAA----TN-----NGTGVAGVAPKAKIMPVKVLDANGSGSLADI 114
Query: 265 IAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV 324
GI A + G V++LS G G + +A A +G+ V AAGN G + +
Sbjct: 115 ANGIRYAADKGAKVINLSLGGG---LGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYP 171
Query: 325 NDAPWMLTVGASTIDR 340
P + V A+ D
Sbjct: 172 AAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 51/203 (25%), Positives = 73/203 (35%), Gaps = 34/203 (16%)
Query: 150 IIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDY 209
+GVLDTGI HP + ++ G G + D
Sbjct: 1 TVGVLDTGIDVNHPDLSG--------RYIGLAYRNGYDFVDNDPDPTP--------DDDN 44
Query: 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGID 269
GHGTH A A +G+ VG+AP A L KV + +S + I+
Sbjct: 45 NGHGTHVAGIIAAGDNNGSGG--------VGVAPNAKLESVKVLPGSGG-TDSELAGAIE 95
Query: 270 AAIE--DGVDVLSLSFGLGL---SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV 324
A E + + V+++S G S + A A +G +AAGN G
Sbjct: 96 WAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNP 155
Query: 325 NDAP---WM-LTVGASTIDRGIT 343
P +TVGA T + I
Sbjct: 156 VSDPASANNIITVGAVTENGTIA 178
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 488 GPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLK 547
P KPD+ PG+++ +A + AN + +SGTSMA PH++GVAALL
Sbjct: 180 APDSPPDEYTKPDVAAPGVDVYSARQ-----GANGDGQYTRLSGTSMAAPHVAGVAALLA 234
Query: 548 SAHPNWSHAAIKSAMMTTAD 567
+AHP+ S IK A+ TA
Sbjct: 235 AAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 54/211 (25%), Positives = 76/211 (36%), Gaps = 44/211 (20%)
Query: 147 KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRN--------- 197
V++ V+DTG+ HP D W G N G+ +
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKD-------NMWVNP----GEIPGN---GIDDDGNGYVDDI 47
Query: 198 ---FFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCN 254
F D +D GHGTH A G N G G+A + K
Sbjct: 48 YGWNFVNNDNDPMDDNGHGTHVAGIIGA---VGNNGIG-----IAGVAWNVKIMPLKFLG 99
Query: 255 PNVYCPESAVIAGIDAAIEDGVDVLSLSFGL-GLSQFYDNGIAKATFEAIRRGIFVSIAA 313
+ S I ID A++ G +++ S+G G SQ + IA AI GI AA
Sbjct: 100 ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAA 155
Query: 314 GNSGPN-----HYTLVNDAPWMLTVGASTID 339
GN G N Y D +++V A+ +
Sbjct: 156 GNDGTNNDKTPTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 483 AFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGV 542
FS G KPDI+ PG NI+++ + +D SGTSMA P ++G
Sbjct: 179 DFSNYGGPVDGI---KPDIVAPGGNILSSGPGG------DLGGYDSHSGTSMAAPLVAGA 229
Query: 543 AALLKSAHPNWSHAAIKSAMMTTADTVNLEG 573
AALL SA+P+ + +++ ++TTA + G
Sbjct: 230 AALLLSANPSLTPETLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 46/169 (27%), Positives = 60/169 (35%), Gaps = 40/169 (23%)
Query: 143 SNF-GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG 201
S F G GV + VLDTGI HP+F F G
Sbjct: 3 SPFTGAGVRVAVLDTGIDLTHPAFAG------------------------RDITTKSFVG 38
Query: 202 KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPE 261
D GHGTH A T G V G G+A A +A+ + +
Sbjct: 39 -GEDVQDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDGGGGD 88
Query: 262 SAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI-----AKATFEAIRR 305
++AGI A+ +G DV+S+S G D G EA R+
Sbjct: 89 GGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQ 137
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 47/223 (21%), Positives = 66/223 (29%), Gaps = 51/223 (22%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G GV +GV+D+GI HP F + + + V + S
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGR-----------------VSEASYYVAVND---AGYAS 41
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
D HGTH A A G G+AP A L + A I
Sbjct: 42 NGDGDSHGTHVAGVIAAARD---------GGGMHGVAPDATLYSARASASAGSTFSDADI 92
Query: 266 -AGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAK------------ATFEAIRRGIFVSIA 312
A D GV +++ S+G + + K A A G A
Sbjct: 93 AAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFA 152
Query: 313 AGNSGPNH-YTLVNDAPW--------MLTVGASTIDRGITISV 346
AGN G + P+ + V A + I
Sbjct: 153 AGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIASYS 195
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 474 GGGSAPQVVA-------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTF 526
S V+A FS GP+ + LKPD+ PG NI++ + PLA +
Sbjct: 174 SPASGRGVIAVASVDSYFSSWGPT--NELYLKPDVAAPGGNILSTY-----PLA--GGGY 224
Query: 527 DIVSGTSMACPHLSGVAALLKSA-HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPAD 585
++SGTSMA P+++G AALL A H S A ++ + +TA + P D T D
Sbjct: 225 AVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPL-----PWSDGTSALPD 279
Query: 586 LYAV---GAGQVNPSKA 599
L V GAG VN KA
Sbjct: 280 LAPVAQQGAGLVNAYKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 51/182 (28%), Positives = 69/182 (37%), Gaps = 40/182 (21%)
Query: 149 VIIGVLDTGITPGHPSF-----NDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD 203
V + V+D+GI P HP + P + GK N+
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDI------------ 49
Query: 204 GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESA 263
+D GHGT A A ANG G+AP + Y+V S
Sbjct: 50 ---VDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFGSCGSAESSW 94
Query: 264 VIAGIDAAIEDGVDVLSLSFG----LGLSQFYDNGIAKATFEAIR----RGIFVSIAAGN 315
+I I A +DGVDV++LS G +G D+ A +AI +G V AAGN
Sbjct: 95 IIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGN 154
Query: 316 SG 317
G
Sbjct: 155 DG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 482 VAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSG 541
V G S S G DI PG +I+++ T + +SGTSMA P ++G
Sbjct: 165 VDRDGTPASPSSNGGAGVDIAAPGGDILSSPTTGGG-------GYATLSGTSMAAPIVAG 217
Query: 542 VAALLKSAHPNWSHAAIKSAMMTT 565
VAALL SA+P+ + A +K+A+++T
Sbjct: 218 VAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 16/91 (17%)
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536
S + +FS G + D+ PG++I++ + +SGTSMA
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPGG---------GYGYMSGTSMAT 228
Query: 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567
PH++G AALL S +PN + A IK A++++AD
Sbjct: 229 PHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539
+ FS RGPS +KPDI PG+NI +A + SGTSMA PH+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPGG---------GYGSSSGTSMAAPHV 234
Query: 540 SGVAALLKSAHP 551
+GVAALL SA+P
Sbjct: 235 AGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 481 VVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLS 540
+ FSGRGP+R G +KPDI PG+NI+ YT SGTS+A ++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILT-------ASPGGGYT--TRSGTSVAAAIVA 407
Query: 541 GVAALL 546
G ALL
Sbjct: 408 GACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI PG++I++AW + +SGTSMA PH++G+AA L S P+ S A +K
Sbjct: 194 DIFAPGVDILSAWIGSDT-------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVK 246
Query: 560 SAMMTTA 566
+ ++ A
Sbjct: 247 ARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 6e-11
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539
+FS GP + ++ PG++I++ + + +SGTSMA PH+
Sbjct: 161 NRASFSSTGP--------EVELAAPGVDILSTYPNN---------DYAYLSGTSMATPHV 203
Query: 540 SGVAALLKSAHPNWSHAAIKSAMMTT 565
+GVAAL+ S P ++A ++ A+ T
Sbjct: 204 AGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 30/140 (21%)
Query: 471 TVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVS 530
+ + Q+ FS GP+ LKPDI PG NI + + + Y + S
Sbjct: 224 KKVPNPNGGQMSGFSSWGPT--PDLDLKPDITAPGGNIYST-------VNDNTYGYM--S 272
Query: 531 GTSMACPHLSGVAALLKSA----HPNWS----HAAIKSAMMTTADTVNLEGKPILDCTRL 582
GTSMA PH++G +AL+K +P S +K+ +M TA P LD +
Sbjct: 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTAT-------PPLD-SED 324
Query: 583 PADLYAV---GAGQVNPSKA 599
Y+ GAG ++ +KA
Sbjct: 325 TKTYYSPRRQGAGLIDVAKA 344
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 30/199 (15%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
GKG I+GV DTG+ H F D + K++ + +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF------------HRKIVRYDSL----SDT 49
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
D GHGTH A AG G + + G+AP A L + + + +
Sbjct: 50 KDDVDGHGTHVAGIIAGK---GND--SSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDL 104
Query: 266 AGIDAAIED-GVDVLSLSFGLGLSQFYDN---GIAKATFEAIRRGIFVSIAAGNSGPNHY 321
+ + + D G + S S+G ++ Y + + I +AGN G +
Sbjct: 105 NKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNN--PDILFVFSAGNDGNDGS 162
Query: 322 TLVN---DAPWMLTVGAST 337
+ A +LTVGAS
Sbjct: 163 NTIGSPATAKNVLTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAA---WKTTVDPLANRVYTFDIVSGTS 533
++ V +FS RGP+ G +KPD++ PG I++A D + + SGTS
Sbjct: 197 NSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSK---SGTS 251
Query: 534 MACPHLSGVAALL----------KSAHPNWSHAAIKSAMMTTAD 567
MA P ++G AALL +P S A +K+ ++ +A
Sbjct: 252 MATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-10
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 42 TYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEE 101
TYI+ + + ++S + + +LY YK+ +GFAA+LT EE
Sbjct: 1 TYIVKFKDGVSKA------AVFSSHKSWHASSKEEAAGASILYSYKHGFNGFAAKLTEEE 54
Query: 102 VKAMETKKGFISARVENTLHLH 123
+ + + + LH
Sbjct: 55 AEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 32/191 (16%)
Query: 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208
V++ ++DTG+ HP + KL+ NF D ++ D
Sbjct: 1 VVVAIIDTGVDLNHPDLSG---------------------KPKLVPGWNFVSNNDPTS-D 38
Query: 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGI 268
GHGT A AA G N G G+AP A L ++ + Y S + I
Sbjct: 39 IDGHGTACAGVAAAV---GNNGLG-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAI 90
Query: 269 DAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIR--RGIFVSIAAGNSGPNHYTLVND 326
A ++G DV+S S+G S + R +G V AAGNSG + +
Sbjct: 91 TWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAA 150
Query: 327 APWMLTVGAST 337
P ++ V A+
Sbjct: 151 NPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 47/215 (21%)
Query: 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAI 207
G+ I V+D G ++ N +++G +F + +
Sbjct: 1 GITIAVIDAGF------PKVHEAFAFKHLFK----------NLRILGEYDFVDNSNNTNY 44
Query: 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCP--ESAVI 265
HGT ST AG G VG AP A + + + P E +
Sbjct: 45 TDDDHGTAVLSTMAGY----------TPGVMVGTAPNASYYLARTEDVASETPVEEDNWV 94
Query: 266 AGIDAAIEDGVDVLSLSFGLGLSQFYDNG--------------IAKATFEAIRRGIFVSI 311
A + A GVD++S S LG + F + I++A A +G+ V
Sbjct: 95 AAAEWADSLGVDIISSS--LGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVN 152
Query: 312 AAGNSGPNHYTLV---NDAPWMLTVGASTIDRGIT 343
+AGN G + + DA +L+VGA +
Sbjct: 153 SAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKA 187
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 61/221 (27%), Positives = 85/221 (38%), Gaps = 66/221 (29%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDE--------------GMPPPPAKWRGKCELVGATCNNK 191
GKGV++G++DTGI HP F +E PPP + G E N
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAA 62
Query: 192 LIGVRNFFCGKDGSAI----DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHL 247
L + I D GHGTH A AAGN G N G+AP A L
Sbjct: 63 LAS-------DNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDFKGVAPEAEL 107
Query: 248 AV---------YKVCNPNVYCP-ESAVIAGI----DAAIEDGVD-VLSLSFG--LG---- 286
V + +V E+ ++ I D A+E V+++S G G
Sbjct: 108 IVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDG 167
Query: 287 ---LSQFYDNGIAKATFEAIRRGIFVSIAAGNSG--PNHYT 322
L ++ D + RGI V + AGN G +H++
Sbjct: 168 TSLLERYIDA-------ISRLRGIAVVVGAGNEGNTQHHHS 201
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG I++ Y + +SGTSMA PH++GVAALL S P S + ++
Sbjct: 200 DVSAPGGGILSTTPD-------GDYAY--MSGTSMATPHVAGVAALLYSQGP-LSASEVR 249
Query: 560 SAMMTTADTVN 570
A+ TAD +
Sbjct: 250 DALKKTADDIG 260
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 50/216 (23%), Positives = 77/216 (35%), Gaps = 31/216 (14%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHP----SFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
W+ G G+I+ V+DTG+ HP + + +G P N
Sbjct: 3 WEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP--------------AVNGYNF-- 46
Query: 196 RNFFCGKDGSAIDYT-GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCN 254
G + + GHGTH A T A +G + G A V AP + ++
Sbjct: 47 -VPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIAGAGGV--APGVKIMSIQIFA 103
Query: 255 PNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR-------GI 307
Y + AV A I A ++G +L S+G Y + A I G
Sbjct: 104 GRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGG 163
Query: 308 FVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGIT 343
V +AGNS + + P ++ V A +
Sbjct: 164 IVVFSAGNSYTDEHRFPAAYPGVIAVAALDTNDNKA 199
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS GP+ + G LKPD++ G I + N +GTS +CP ++G+
Sbjct: 189 FSSIGPT--ADGRLKPDVMALGTGIY---------VINGDGNITYANGTSFSCPLIAGLI 237
Query: 544 ALLKSAHPNWSHAAIKSAMMTTAD 567
A L AHPNW++ IK A++ +A
Sbjct: 238 ACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 499 PDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAI 558
DI PG++I++A + +SGTSMA PH++GVAAL W+ A
Sbjct: 213 VDIAAPGVDIVSAAPGG---------GYRSMSGTSMATPHVAGVAAL-------WAEALP 256
Query: 559 KSAMMTTADTV-NLEGKPILDCTRLPADLYAVGAGQV 594
K+ A + DL G G
Sbjct: 257 KAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 52/200 (26%), Positives = 76/200 (38%), Gaps = 39/200 (19%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W+ G GV + V DTG+ HP F + + R +
Sbjct: 1 WQLGYTGAGVKVAVFDTGLAKDHPHF-------------------------RNVKERTNW 35
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
+ + D GHGT FV G + + +G AP A + +++V N
Sbjct: 36 TNEK-TLDDGLGHGT---------FVAG--VIASSREQCLGFAPDAEIYIFRVFTNNQVS 83
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
S + + AI +DVL+LS +G F D +E I + A GN GP
Sbjct: 84 YTSWFLDAFNYAILTKIDVLNLS--IGGPDFMDKPFVDKVWELTANNIIMVSAIGNDGPL 141
Query: 320 HYTLVNDAPWMLTVGASTID 339
+ TL N A M +G ID
Sbjct: 142 YGTLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 40/171 (23%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 429 GDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRG 488
++ + P AV +T + + GT R
Sbjct: 135 QSGSIFGHAAAPGAIAVGAVD------YGNTPAFGSDPAPGGTPSSFDPV------GIRL 182
Query: 489 PSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKS 548
P+ KPD+ P + D N F GTS A PH +GVAAL+ S
Sbjct: 183 PT--PEVRQKPDVTAPD-GVNGTVDGDGDGPPN----F---FGTSAAAPHAAGVAALVLS 232
Query: 549 AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
A+P + A I+ A+ +TA P A G+G V+ +A
Sbjct: 233 ANPGLTPADIRDALRSTALD-----------MGEPGYDNASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 66/256 (25%), Positives = 87/256 (33%), Gaps = 47/256 (18%)
Query: 141 KDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFC 200
GKGV + V+DTG+ HP + +F
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDLAGSA-----------------------VAGGDFVD 172
Query: 201 G-KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVY 258
G + +D GHGTH A T A NG V G+AP A L + KV
Sbjct: 173 GDPEPPFLDDNGHGTHVAGTIAA--------VIFDNGAGVAGVAPGAKLLLVKVLGSGGG 224
Query: 259 CPE-SAVIAGIDAAIEDG--VDVLSLSFGLGLSQFYDNGIAKATFEAIRRG-IFVSIAAG 314
E S V GI+ A G DV++LS G LS + A A G + + AAG
Sbjct: 225 SGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAG 284
Query: 315 NSGPNHYTLVNDAPW------MLTVGASTIDRGIT-ISVRLGNQETYDGEALWQWTDIPS 367
N G N P ++ VGA + + S G+ D A +I S
Sbjct: 285 NDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSND-GSPTGVDIAA--PGVNILS 341
Query: 368 KRLPLVYPDARNHSTT 383
P T
Sbjct: 342 LSAVNTLPGDGADYVT 357
|
Length = 508 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 56/221 (25%), Positives = 79/221 (35%), Gaps = 44/221 (19%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G G+++ +DTG+ HP+ + K+RG N+F +
Sbjct: 1 GTGIVVANIDTGVDWTHPALKN--------KYRGWG-------GGSADHDYNWFDPVGNT 45
Query: 206 A--IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESA 263
D GHGTHT T GN G I G+AP A + + N
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDGDGQQI---------GVAPGARWIACRALDRNGGNDADY 96
Query: 264 V-----------IAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR-GIFVSI 311
+ AG A + DV++ S+G DN + A R GIF
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVF 153
Query: 312 AAGNSGPNHYTL---VNDAPWMLTVGASTIDRGITISVRLG 349
AAGN GP TL + P VGA+ + + G
Sbjct: 154 AAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSRG 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-07
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDD-----VLNAGGAAMIL 422
PLVY N C PE L DVKGK+VL +RG AG A +I+
Sbjct: 6 GTGPLVY--VGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVII 63
Query: 423 MNDE---LFGDSTLIQRNSLPNVRVSHAVSESI 452
N++ L G ++P V +S+ E++
Sbjct: 64 YNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 504 PGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMM 563
PG NI + + VSGTS A PH+SG AALL P + ++ ++
Sbjct: 211 PGENIYSTDPDGG-------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263
Query: 564 TTAD 567
TTA
Sbjct: 264 TTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 27/120 (22%)
Query: 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539
+FS GP D+ PG NI++ L+ SGTS A P +
Sbjct: 189 TPSSFSLPGP--------WVDLAAPGENIVS--------LSPGGDGLATTSGTSFAAPFV 232
Query: 540 SGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
SG AAL++S P+ + A ++ + TAD G+ D Y VG G V+P A
Sbjct: 233 SGTAALVRSRFPDLTAAQVRRRIEATADHPARGGR----------DDY-VGYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 45/201 (22%), Positives = 68/201 (33%), Gaps = 46/201 (22%)
Query: 144 NFGKG---VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFC 200
FG G + I +LD + HP F + P C
Sbjct: 4 AFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAAC------------------- 44
Query: 201 GKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCP 260
+ HGTH AS IFGQ + G+APL + +
Sbjct: 45 ----QDGGASAHGTHVASL----------IFGQPCSSVEGIAPLCRGLNIPIFAEDRRGC 90
Query: 261 ESAVIA-GIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFE-AI----RRGIFVSIAAG 314
+A I+ A+E G ++++S G + G A A+ + + + AAG
Sbjct: 91 SQLDLARAINLALEQGAHIINISGG----RLTQTGEADPILANAVAMCQQNNVLIVAAAG 146
Query: 315 NSGPNHYTLVNDAPWMLTVGA 335
N G + P +L VGA
Sbjct: 147 NEGCACLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.8 bits (115), Expect = 9e-06
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536
+ V +FS G DI PG+NI++ P Y +SGTSMA
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDGADYVT--LSGTSMAA 365
Query: 537 PHLSGVAALLKSAHP-NWSHAAIKSAMMTTADTVNLEGKPIL 577
PH+SGVAAL+ SA+P + A +++ ++TTA L G L
Sbjct: 366 PHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNL 407
|
Length = 508 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 474 GGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWK-TTVDPLANRVYTFDIVSGT 532
G + VV++S RGPS G KPD+ G A + + FD+ GT
Sbjct: 214 LPGGSGDVVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGT 271
Query: 533 SMACPHLSGVAALLKSAHPNWSHAA------IKSAMMTTA 566
SMA P +G AAL+ SA +++ +M+TA
Sbjct: 272 SMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPN 552
DI PG+ I T + ++ +SGTSMA PH+SGVAAL+ S P+
Sbjct: 209 DIAAPGVGTI--LSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
T+ + GTSMA PH++GVAAL+KS +P+ + A I+S + +T
Sbjct: 244 STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 212 HGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPE--SAVIAGID 269
HGTH A AA +F G+AP A + K+ + + E +A++ +
Sbjct: 187 HGTHVAGIAAAHF--------PEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMI 238
Query: 270 AAIEDGVDVLSLSFGLGLSQFYDNG-IAKATFEAIRRG--IFVSIAAGNSGP 318
AAIE D++++S+G + + ++G I + EA+ + IFVS +AGN+GP
Sbjct: 239 AAIETKCDLINMSYGEA-THWPNSGRIIELMNEAVNKHGVIFVS-SAGNNGP 288
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 27/210 (12%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G+GV+I ++DTG+ HP + G W+ K + L+ + + G
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFDYKA-----YLLPGMDKWGGFYVI 51
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVYCPESAV 264
D+ HGT AS AAG N++G + G+AP A +A K
Sbjct: 52 MYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLW 111
Query: 265 IAGIDAAIEDG---------VDVLSLSFGLGLSQFYDNG----IAKATFEAI--RRGIFV 309
AG D VDV+S S+G+ + I+ +A+ G+ +
Sbjct: 112 TAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPI 171
Query: 310 SIAAGNSGPNHYTLVND--APWMLTVGAST 337
AAGN GP + T+ A ++VGA+T
Sbjct: 172 VSAAGNGGPGYGTITAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 501 IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKS 560
G++IIA + Y VSG S A PH++G+ ALL S P+ +K
Sbjct: 165 FSADGVDIIAPAP-------HGRYLT--VSGNSFAAPHVTGMVALLLSEKPDIDANDLKR 215
Query: 561 AMMTTA 566
+ A
Sbjct: 216 LLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG I +T + Y D SGTSMA P +SGVAAL+ S +PN + +K
Sbjct: 233 DVFAPGERI----YSTT---PDNEYETD--SGTSMAAPVVSGVAALIWSYYPNLTAKEVK 283
Query: 560 SAMMTTA 566
++ +
Sbjct: 284 QIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIA---KATFEAIRRGIFVSIAAGNS 316
P+SA A I+AA+E VD++S+S+ + + DN I A EA+ RGI + +A +
Sbjct: 88 PQSAAKA-IEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQ 146
Query: 317 GPNHYTLVNDAPW---MLTVGASTIDRGITISVRLGNQETY 354
G + +GA+ D G V ++ Y
Sbjct: 147 GAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDY 187
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 482 VAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYT---FDIVSGTSMACPH 538
++S G D++ PG+ I W T + Y + SGTS A P
Sbjct: 167 ASYSNYGNY--------VDLVAPGVGI---WTTGTGRGSAGDYPGGGYGSFSGTSFASPV 215
Query: 539 LSGVAALLKSAHPNWSHAAIKSAMMTT 565
+GVAAL+ SA+PN + A ++ + +T
Sbjct: 216 AAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 49/232 (21%), Positives = 66/232 (28%), Gaps = 80/232 (34%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W+ GKGV + V+D G+ HP +L +F
Sbjct: 32 WEQGITGKGVTVAVVDDGLEITHP------------------DLKDNYDPE---ASYDFN 70
Query: 200 CGKDG---SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPN 256
D HGT A A G N VG+AP
Sbjct: 71 DNDPDPTPRYDDDNSHGTRCAGEIAA---VGNNGIC-----GVGVAP------------- 109
Query: 257 VYCPESAVIAGI---DAAIEDGVDVLSLSFGLGLSQFYDN------------GIAKATFE 301
A + GI D + D V+ SL Y N G
Sbjct: 110 -----GAKLGGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQR 164
Query: 302 AIRRG----------IFVSIAAGNSGPNH----YTLVNDAPWMLTVGASTID 339
A+ G IFV AAGN G N++ + ++V A T +
Sbjct: 165 ALENGVTNGRNGKGSIFVW-AAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN 215
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 526 FDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567
+ VSGTS A P ++ ALL A P A T D
Sbjct: 185 YRYVSGTSFAAPFVTAALALLLQASPLAPDDARARLAATAKD 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 58/215 (26%), Positives = 82/215 (38%), Gaps = 50/215 (23%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G GV + V+DTG+ HP +P G + VG+ DG+
Sbjct: 12 GAGVTVAVIDTGVDD-HPRLPGLVLP-------GG-DFVGSG---------------DGT 47
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPES--- 262
D GHGT A AG G G+AP A + + + E
Sbjct: 48 D-DCDGHGTLVAGIIAGRPGEGDG--------FSGVAPDARILPIRQTSAAFEPDEGTSG 98
Query: 263 -----AVIAGIDAAIEDGVDVLSLSFGLGLSQ---FYDNGIAKATFEAIRRGIFVSIAAG 314
+ I A + G DV+++S L D + A A+ +G+ V AAG
Sbjct: 99 VGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAG 158
Query: 315 NSGP--NHYTLVNDA--PWMLTVGASTIDRGITIS 345
N+G T+V A P +L VG+ IDR T S
Sbjct: 159 NTGGDGQKTTVVYPAWYPGVLAVGS--IDRDGTPS 191
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 237 TAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS-------Q 289
A +AP A++ +Y P A +A + + V+S+S+G Q
Sbjct: 82 YAGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDN-PNLPSVISISYGEPEQSLPPAYAQ 140
Query: 290 FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDA-----------PWMLTVGASTI 338
N A+A +GI V A+G+SG P++ VG +T+
Sbjct: 141 RVCNLFAQAA----AQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 38/169 (22%)
Query: 151 IGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYT 210
+G++DTGI HP+ + + F G+
Sbjct: 3 VGMIDTGIDTAHPAL-------------------------SAVVIARLFFAGPGAPAPSA 37
Query: 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDA 270
HGT AS AG G + A L V+ A+ +D
Sbjct: 38 -HGTAVASLLAGA--------GAQRPGLLPGADLYGADVFGRAGGGEGASALALARALDW 88
Query: 271 AIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
E GV V+++S L+ + +A A A RG+ + AAGN GP
Sbjct: 89 LAEQGVRVVNIS----LAGPPNALLAAAVAAAAARGMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.89 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.74 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.08 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.03 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.89 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.75 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.71 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.4 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.28 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.25 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.24 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.21 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.2 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.16 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.1 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.07 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.04 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.04 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.99 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.94 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.81 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.76 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.72 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.4 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.95 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.73 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.55 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 94.49 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 94.23 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 94.0 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 93.05 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 91.78 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 91.18 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 90.18 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 88.59 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 87.65 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 86.25 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.21 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 84.25 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=436.40 Aligned_cols=289 Identities=57% Similarity=0.852 Sum_probs=248.0
Q ss_pred ecccccCCCCccccCCCCC--cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc----ccCcccc
Q 045720 120 LHLHTTHTPNFLGLHRSSG--FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA----TCNNKLI 193 (745)
Q Consensus 120 ~~~~~~~s~~~~g~~~~~~--~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~----~~~~kv~ 193 (745)
+++++++++.++++....+ +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+.. .+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 3678888999999876444 477799999999999999999999999999999999999999988766 4899999
Q ss_pred ceeeccCCCC-----------CCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChH
Q 045720 194 GVRNFFCGKD-----------GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPES 262 (745)
Q Consensus 194 g~~~~~~~~~-----------~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~ 262 (745)
+.++|.++.+ .++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++....+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 9999987542 14578899999999999999776655556566677999999999999999833568899
Q ss_pred HHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccce
Q 045720 263 AVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGI 342 (745)
Q Consensus 263 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 342 (745)
++++||++|++++++|||||||......+.+.+..++.++.++|++||+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645567788888889999999999999999988888888999999999830
Q ss_pred EEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEE
Q 045720 343 TISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL 422 (745)
Q Consensus 343 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~ 422 (745)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceee
Q 045720 423 MNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502 (745)
Q Consensus 423 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~ 502 (745)
.||||+
T Consensus 236 --------------------------------------------------------------------------~~~di~ 241 (307)
T cd04852 236 --------------------------------------------------------------------------LKPDIA 241 (307)
T ss_pred --------------------------------------------------------------------------Ccccee
Confidence 477999
Q ss_pred eCCccEEeeccCCCCC-CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 503 GPGLNIIAAWKTTVDP-LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 503 APG~~I~sa~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|||.+|++++...... .......|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 242 apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 242 APGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999998742111 2233357999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=450.54 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=219.1
Q ss_pred CCccccCC--CCCccc--CCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCC--cccccccccCcccCccccceeeccCC
Q 045720 128 PNFLGLHR--SSGFWK--DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPA--KWRGKCELVGATCNNKLIGVRNFFCG 201 (745)
Q Consensus 128 ~~~~g~~~--~~~~~~--~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~--~~~~~~~~~~~~~~~kv~g~~~~~~~ 201 (745)
..+|+++. ++.+|+ .+.+|+||+|||||||||++||||.++-...... ..++....+. ..... +.+++|.++
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~n-G~vdd-~~G~nfVd~ 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNN-GNVDD-EYGANFVNN 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccC-Ccccc-cccccccCC
Confidence 34566654 455666 4578999999999999999999998642110000 0000000000 00111 335677765
Q ss_pred CCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEe
Q 045720 202 KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSL 281 (745)
Q Consensus 202 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~ 281 (745)
.+ .+.|+.||||||||||||...++ . .+.||||+|+|+++|+++..+.+..+++++||+||++.|++||||
T Consensus 371 ~~-~P~D~~GHGTHVAGIIAA~gnN~-------~-Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 DG-GPMDDNYHGTHVSGIISAIGNNN-------I-GIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred CC-CCCCCCCcchHHHHHHhccccCC-------C-ceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 44 67899999999999999975322 1 248999999999999998334478899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC--------------cccC----CCCceEEecccccccceE
Q 045720 282 SFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY--------------TLVN----DAPWMLTVGASTIDRGIT 343 (745)
Q Consensus 282 SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--------------~~~~----~~p~vitVga~~~~~~~~ 343 (745)
|||+.. +...+..++.+|.++|++||+||||+|.... .++. ..+++|+|||...+.
T Consensus 442 SlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 442 SFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 999752 3456778888999999999999999986431 1222 346777777742110
Q ss_pred EEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEe
Q 045720 344 ISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILM 423 (745)
Q Consensus 344 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~ 423 (745)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeee
Q 045720 424 NDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIG 503 (745)
Q Consensus 424 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~A 503 (745)
...-.++.||+||. .++||+|
T Consensus 516 ----------------------------------------------------~~~~s~s~~Snyg~-------~~VDIaA 536 (639)
T PTZ00262 516 ----------------------------------------------------NNQYSLSPNSFYSA-------KYCQLAA 536 (639)
T ss_pred ----------------------------------------------------CCcccccccccCCC-------CcceEEe
Confidence 00012345666662 2359999
Q ss_pred CCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCC
Q 045720 504 PGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583 (745)
Q Consensus 504 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~ 583 (745)
||++|+|+++.+ .|..++|||||||||||+||||++++|+|++.||+++|++||.++..
T Consensus 537 PG~dI~St~p~g---------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~------------ 595 (639)
T PTZ00262 537 PGTNIYSTFPKN---------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPS------------ 595 (639)
T ss_pred CCCCeeeccCCC---------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC------------
Confidence 999999999873 79999999999999999999999999999999999999999987632
Q ss_pred CCccccCC-CccCcCCCCCCCcee
Q 045720 584 ADLYAVGA-GQVNPSKANDPGLVY 606 (745)
Q Consensus 584 ~~~~~~G~-G~id~~~Al~~~lv~ 606 (745)
.+..+|| |+||+++|++..+-+
T Consensus 596 -~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 596 -LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCCccccCcEEcHHHHHHHHHhc
Confidence 1223333 899999999866644
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=414.52 Aligned_cols=270 Identities=27% Similarity=0.280 Sum_probs=204.8
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcc
Q 045720 143 SNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAG 222 (745)
Q Consensus 143 g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag 222 (745)
|++|+||+|+|||||||.+||++.+...+. +.+...+..... ...|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-------------------l~~~~~~~~~~~-~~~d~~gHGT~vAgii-- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-------------------LPGNVNVLGDLD-GGSGGGDEGRAMLEII-- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-------------------CCcceeeccccC-CCCCCCchHHHHHHHH--
Confidence 579999999999999999988654321111 111111111111 4567889999999999
Q ss_pred cCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCC-CCchHHHHHHH
Q 045720 223 NFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQF-YDNGIAKATFE 301 (745)
Q Consensus 223 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~-~~~~~~~a~~~ 301 (745)
.||||+|+|+.+|+.. ..+++++||+|++++|++|||||||....+. ....+..++.+
T Consensus 59 ----------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 59 ----------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred ----------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 3999999999988754 4788999999999999999999999865443 34467788888
Q ss_pred HHhC-CcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCC
Q 045720 302 AIRR-GIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379 (745)
Q Consensus 302 a~~~-Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+.++ |++||+||||+|.... ..++..|++|+|||...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------------------------- 164 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------------------------- 164 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------------------------
Confidence 8887 9999999999998643 4468899999999974332110000
Q ss_pred CCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcC
Q 045720 380 HSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINST 459 (745)
Q Consensus 380 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
|..
T Consensus 165 ------~~~----------------------------------------------------------------------- 167 (275)
T cd05562 165 ------DPA----------------------------------------------------------------------- 167 (275)
T ss_pred ------ccc-----------------------------------------------------------------------
Confidence 000
Q ss_pred CCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCc-cEEeeccCCCCCCCCcccceeeecCCcchhHH
Q 045720 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL-NIIAAWKTTVDPLANRVYTFDIVSGTSMACPH 538 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~ 538 (745)
. .......+.|+++||+. ++++||||+|||+ ++.+.... +.|..++||||||||
T Consensus 168 -----------~---~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~AaP~ 222 (275)
T cd05562 168 -----------P---GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSAAAPH 222 (275)
T ss_pred -----------c---CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchHHHHH
Confidence 0 00011345678899987 6789999999975 44555443 479999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 539 LSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 539 VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
|||++|||+|++|+|++.|||++|++||+++.. +..+..||||+||+.+|++
T Consensus 223 VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 223 AAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999998742 3466789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=432.95 Aligned_cols=402 Identities=24% Similarity=0.282 Sum_probs=250.4
Q ss_pred CCCCCeEEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccccCcccCccccceeecc-------CCCCC----CCCCCCC
Q 045720 144 NFGKGVIIGVLDTGITPGHPSFN-DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF-------CGKDG----SAIDYTG 211 (745)
Q Consensus 144 ~~G~Gv~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~-------~~~~~----~~~d~~g 211 (745)
++|+||+|||||||||+.||+|+ .++.+|+...|++....+.. ......+.++.. ...+. ...|+.|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~G 79 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-PGGYYGGGEYTEEIINAALASDNPYDIVPSRDENG 79 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC-CccccCceEEeHHHHHHHHhcCCccccCcCCCCCC
Confidence 58999999999999999999999 46788999999998876532 111111111111 01111 4568899
Q ss_pred ChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC----------CChHHHHHHHHHHHhC-----CC
Q 045720 212 HGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY----------CPESAVIAGIDAAIED-----GV 276 (745)
Q Consensus 212 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g----------~~~~~i~~ai~~a~~~-----g~ 276 (745)
|||||||||||+..++ ..+.||||+|+|+++|++..... +..++++.||+|+++. .+
T Consensus 80 HGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p 151 (455)
T cd07478 80 HGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP 151 (455)
T ss_pred chHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999986432 23489999999999999983322 5688999999999874 47
Q ss_pred cEEEeccCCCCC-CCCCchHHHHHHHHHhC-CcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCcee
Q 045720 277 DVLSLSFGLGLS-QFYDNGIAKATFEAIRR-GIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETY 354 (745)
Q Consensus 277 dVIN~SlG~~~~-~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 354 (745)
.|||||||.... ....+.+++++..+.++ |++||+||||+|....+..+... .........+.++.++..
T Consensus 152 ~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~ 223 (455)
T cd07478 152 LVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKG 223 (455)
T ss_pred eEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcc
Confidence 899999998653 34567788888777765 99999999999987666543110 001112233444444433
Q ss_pred eeeecccCCCCCCCceeEEecCCCCCCC--cCCCCCCCCCCCcccceEEEEecCCc---------hhhhhhcCceEEEEe
Q 045720 355 DGEALWQWTDIPSKRLPLVYPDARNHST--TTFCSPETLKSVDVKGKVVLCQRGAS---------GDDVLNAGGAAMILM 423 (745)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~~gkivl~~~~~~---------~~~~~~~ga~~~i~~ 423 (745)
....+|...+ ....+.++.+....... ...-............++.+..+... +..-....+.+.|..
T Consensus 224 ~~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~ 302 (455)
T cd07478 224 FNLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRL 302 (455)
T ss_pred eEEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEE
Confidence 3333443321 01111222111100000 00000000000001122222221111 111122344455444
Q ss_pred ecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecce-----Eec--CCCCCeeecccCCCCCCCCCCC
Q 045720 424 NDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGT-----VIG--GGSAPQVVAFSGRGPSRISPGI 496 (745)
Q Consensus 424 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~-----~~~--~~~~~~~a~fSs~Gp~~~~~g~ 496 (745)
........ .-+.|+|.-.+...+.. ++.. ++..+++.+.+ .++ +...+.++.||||||+. +++
T Consensus 303 ~~~~~~~g--~~~~Wlp~~~~~~~~t~----f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~ 372 (455)
T cd07478 303 TGVSITDG--RFDAWLPSRGLLSENTR----FLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGR 372 (455)
T ss_pred EeccCCCc--eEEEEecCcCcCCCCCE----eecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCC
Confidence 43221110 01345665544433322 2222 23345554432 122 23345799999999998 789
Q ss_pred ccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhC------CCCCHHHHHHHhhccccccc
Q 045720 497 LKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH------PNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 497 ~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~ls~~~vk~~L~~TA~~~~ 570 (745)
+||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++||+++.
T Consensus 373 ~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~ 443 (455)
T cd07478 373 IKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP 443 (455)
T ss_pred cCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999986 489999999999999999999999865 56799999999999999874
Q ss_pred CCCCcccCCCCCCCCccccCCC
Q 045720 571 LEGKPILDCTRLPADLYAVGAG 592 (745)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~G~G 592 (745)
. ..+++++||||
T Consensus 444 ~----------~~~pn~~~GyG 455 (455)
T cd07478 444 G----------DEYPNPEWGYG 455 (455)
T ss_pred C----------CCCCCCCCCCC
Confidence 2 35678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=415.26 Aligned_cols=286 Identities=29% Similarity=0.318 Sum_probs=192.2
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFV 225 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 225 (745)
|+||+|||||||||++||||.++.. ..|...++ +...+..+.++..+....+.|++||||||||||||+..
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d-----~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~ 71 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD-----YKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGK 71 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC-----cCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCc
Confidence 8999999999999999999975421 11111111 11123333333332111467899999999999999854
Q ss_pred CCCccccc-CCCceeeecCCceEEEEEeeCCCCCCChHHHHH-------HHHHH--HhCCCcEEEeccCCCCCCCC----
Q 045720 226 HGANIFGQ-ANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIA-------GIDAA--IEDGVDVLSLSFGLGLSQFY---- 291 (745)
Q Consensus 226 ~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIN~SlG~~~~~~~---- 291 (745)
...+..++ ....+.||||+|+|+.+|++...+......+.. +++|+ .+++++|||||||.......
T Consensus 72 ~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~ 151 (311)
T cd07497 72 MEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151 (311)
T ss_pred ccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence 32221111 122458999999999999997222232222332 34444 36799999999998542211
Q ss_pred -CchHHHHHHH-HHhCCcEEEEecCCCCCCC--CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 292 -DNGIAKATFE-AIRRGIFVSIAAGNSGPNH--YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 292 -~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
.+........ +.++|+++|+||||+|+.. ...++..+++|+|||++.....+.
T Consensus 152 g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------- 208 (311)
T cd07497 152 GLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF----------------------- 208 (311)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-----------------------
Confidence 1223333322 2389999999999999764 345678899999999742211000
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
+.+.+
T Consensus 209 --~~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 209 --YLFGY------------------------------------------------------------------------- 213 (311)
T ss_pred --hhhcc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC-CCCCcccce
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD-PLANRVYTF 526 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~-~~~~~~~~y 526 (745)
.....+.++.||||||+. ++++||||+|||++|+++.+.... ........|
T Consensus 214 --------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y 265 (311)
T cd07497 214 --------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAF 265 (311)
T ss_pred --------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccCCCcce
Confidence 002235789999999998 689999999999999998765421 011122479
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCC------CCCHHHHHHHhhccc
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHP------NWSHAAIKSAMMTTA 566 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~vk~~L~~TA 566 (745)
..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 266 ~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 266 DLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999999999999999886 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=405.62 Aligned_cols=242 Identities=30% Similarity=0.403 Sum_probs=199.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHh
Q 045720 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAST 219 (745)
Q Consensus 140 ~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGi 219 (745)
|+++++|+||+|||||||||.+||+|.+. +...+|.... ...|+.+||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~--~~~d~~gHGT~VAGi 54 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNEK--TLDDGLGHGTFVAGV 54 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCCC--CCCCCCCcHHHHHHH
Confidence 89999999999999999999999999742 0112222221 456788999999999
Q ss_pred hcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHH
Q 045720 220 AAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKA 298 (745)
Q Consensus 220 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a 298 (745)
|+|+.. .+.||||+|+|+.+|++. +.+ +..+.++++++||++++++|||||||... ....++.++
T Consensus 55 Ia~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~ 120 (255)
T cd07479 55 IASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDK 120 (255)
T ss_pred HHccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHH
Confidence 998742 137999999999999998 444 66778999999999999999999999753 234566677
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 299 TFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 299 ~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+.++.++|++||+||||+|+... ..++..+++|+||+..
T Consensus 121 ~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 161 (255)
T cd07479 121 VWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------------------------- 161 (255)
T ss_pred HHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------------------------
Confidence 77888999999999999997543 3567788999999841
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCC----CCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCC
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRI----SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGT 532 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
..+.++.|||+|++.. ..+++||||+|||.+|+++... +.|..++||
T Consensus 162 --------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~~sGT 212 (255)
T cd07479 162 --------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRALSGT 212 (255)
T ss_pred --------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEEeccH
Confidence 1236789999996521 2578899999999999988765 378899999
Q ss_pred cchhHHHHHHHHHHHhhCC----CCCHHHHHHHhhcccccc
Q 045720 533 SMACPHLSGVAALLKSAHP----NWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p----~ls~~~vk~~L~~TA~~~ 569 (745)
|||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 213 S~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999999999999999998 789999999999999976
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=421.93 Aligned_cols=309 Identities=29% Similarity=0.366 Sum_probs=237.6
Q ss_pred cccCCC-CCCCeEEEEEcCCCCCCCCCCCCCCCCCCCC-----cccccccccCc-ccCccccceeeccCCCCCC--CCCC
Q 045720 139 FWKDSN-FGKGVIIGVLDTGITPGHPSFNDEGMPPPPA-----KWRGKCELVGA-TCNNKLIGVRNFFCGKDGS--AIDY 209 (745)
Q Consensus 139 ~~~~g~-~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~-----~~~~~~~~~~~-~~~~kv~g~~~~~~~~~~~--~~d~ 209 (745)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+.. +++.+++.+++|.+..+.. ..+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDDG 81 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCCC
Confidence 788887 9999999999999999999999764443211 22222222222 6778899999998876531 3478
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCC--CCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP--NVYCPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
.+|||||||||+|...+.. ....+.||||+|+|+.+|+++. ........++++++++++.|++|||||||...
T Consensus 82 ~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 156 (346)
T cd07475 82 SSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156 (346)
T ss_pred CCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 9999999999999864321 1223589999999999999972 33467788999999999999999999999875
Q ss_pred CC-CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------ccCCCCceEEecccccccceEEEEEcCC
Q 045720 288 SQ-FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT----------------LVNDAPWMLTVGASTIDRGITISVRLGN 350 (745)
Q Consensus 288 ~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~----------------~~~~~p~vitVga~~~~~~~~~~~~~~~ 350 (745)
.. .....+..++.++.++|++||+||||+|..... .+...+++|+||+....
T Consensus 157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~----------- 225 (346)
T cd07475 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK----------- 225 (346)
T ss_pred CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-----------
Confidence 32 455677788889999999999999999865432 12345566666653200
Q ss_pred CceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCc
Q 045720 351 QETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGD 430 (745)
Q Consensus 351 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~ 430 (745)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe
Q 045720 431 STLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA 510 (745)
Q Consensus 431 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s 510 (745)
......+.++.||+|||+. ++++||||+|||.+|++
T Consensus 226 ------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s 261 (346)
T cd07475 226 ------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYS 261 (346)
T ss_pred ------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEE
Confidence 0012334678999999998 67999999999999999
Q ss_pred eccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhh----CCCCCHHH----HHHHhhcccccccCCCCcccCCCCC
Q 045720 511 AWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSA----HPNWSHAA----IKSAMMTTADTVNLEGKPILDCTRL 582 (745)
Q Consensus 511 a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----vk~~L~~TA~~~~~~~~~~~~~~~~ 582 (745)
+... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||++.... ...+.
T Consensus 262 ~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-----~~~~~ 327 (346)
T cd07475 262 TVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-----EDTKT 327 (346)
T ss_pred ecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----CCCCc
Confidence 9876 37899999999999999999999997 78999876 788999999853211 11245
Q ss_pred CCCccccCCCccCcCCCCC
Q 045720 583 PADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 583 ~~~~~~~G~G~id~~~Al~ 601 (745)
.+.+..+|+|+||+++||+
T Consensus 328 ~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 328 YYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccCcchhcHHHhhC
Confidence 6778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=405.50 Aligned_cols=286 Identities=31% Similarity=0.398 Sum_probs=227.7
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC---------CCCCC
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK---------DGSAI 207 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~---------~~~~~ 207 (745)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|..+. +..+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCCC
Confidence 56899999999999999999999999999864221 11222223332111 11456
Q ss_pred CCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
|..+|||||||||+|...+ ..+.||||+|+|+.+|+++.......+.+++++++|++++++|||||||...
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 7799999999999998533 1248999999999999998333467778999999999999999999999864
Q ss_pred CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCC
Q 045720 288 SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTD 364 (745)
Q Consensus 288 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 364 (745)
. +....+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777888899999999999999987643 3356778999998731
Q ss_pred CCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEe
Q 045720 365 IPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccc
Q 045720 445 SHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVY 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
+.||+|||+. +...||||+|||++++++++... +
T Consensus 189 -------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-------~ 222 (312)
T cd07489 189 -------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-------G 222 (312)
T ss_pred -------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-------C
Confidence 4689999998 56899999999999999988753 2
Q ss_pred ceeeecCCcchhHHHHHHHHHHHhhC-CCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCC
Q 045720 525 TFDIVSGTSMACPHLSGVAALLKSAH-PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPG 603 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 603 (745)
.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..... ..++++..+|||+||+++|++..
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHHHHhcCC
Confidence 69999999999999999999999999 9999999999999999987543221111 11467789999999999999954
Q ss_pred c
Q 045720 604 L 604 (745)
Q Consensus 604 l 604 (745)
-
T Consensus 301 ~ 301 (312)
T cd07489 301 T 301 (312)
T ss_pred c
Confidence 3
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=391.40 Aligned_cols=247 Identities=26% Similarity=0.317 Sum_probs=203.9
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
+|..+++|+||+|||||+|||++||+|.+..+.... .+....+ ...|..+|||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------~~~~~~~-~~~~~~gHGT~VAg 58 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------TYAAAAC-QDGGASAHGTHVAS 58 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------CccccCC-CCCCCCCcHHHHHH
Confidence 799999999999999999999999999875322111 1111111 45678899999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCCCchHH
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLS-QFYDNGIA 296 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~~~~~~ 296 (745)
||+|+... .+.||||+|+|+.+|++..... .+..++++||+||+++|++|||||||.... ......+.
T Consensus 59 ii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~ 128 (267)
T cd07476 59 LIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILA 128 (267)
T ss_pred HHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHH
Confidence 99987421 1479999999999999873333 446789999999999999999999997542 33456678
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 297 KATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 297 ~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+++.++.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 129 ~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 169 (267)
T cd07476 129 NAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD--------------------------------------- 169 (267)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec---------------------------------------
Confidence 88889999999999999999988778888899999999842
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchh
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 536 (745)
..+.++.||+||+.. .||||+|||.+|+++.+.+ .|..++||||||
T Consensus 170 --------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~---------~~~~~sGTS~Aa 215 (267)
T cd07476 170 --------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALGG---------EVVRRSGTSFAA 215 (267)
T ss_pred --------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---------CeEEeccHHHHH
Confidence 112457899999764 4889999999999998773 789999999999
Q ss_pred HHHHHHHHHHHhhCCC----CCHHHHHHHhhcccccccC
Q 045720 537 PHLSGVAALLKSAHPN----WSHAAIKSAMMTTADTVNL 571 (745)
Q Consensus 537 P~VAG~aALl~q~~p~----ls~~~vk~~L~~TA~~~~~ 571 (745)
|||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 216 P~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 216 AIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9999999999999887 8999999999999998854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=393.70 Aligned_cols=278 Identities=42% Similarity=0.611 Sum_probs=216.6
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--------------CCCCCCC
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--------------SAIDYTG 211 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--------------~~~d~~g 211 (745)
|+||+|||||+|||++||+|.+... .+.++...++|...... ...|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985321 22334444555433210 1345889
Q ss_pred ChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC
Q 045720 212 HGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY 291 (745)
Q Consensus 212 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (745)
|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999988533 2234899999999999999733447888999999999999999999999976432 4
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCCcc--cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCc
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL--VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKR 369 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 369 (745)
.+.+..++.++.++|+++|+||||+|...... ++..+++|+||++....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 56778888899999999999999998765443 57789999999853100
Q ss_pred eeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhH
Q 045720 370 LPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVS 449 (745)
Q Consensus 370 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 449 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCC-CCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 450 ESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGR-GPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
.........|+++ |+.. ...+||||+|||.+|.+++.... ..|..
T Consensus 186 -------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-------~~~~~ 231 (295)
T cd07474 186 -------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-------TGYAR 231 (295)
T ss_pred -------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------CceEE
Confidence 0011233445555 4544 57899999999999999987742 37899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCC
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 599 (745)
++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..||+|+||+.+|
T Consensus 232 ~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred eccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 9999999999999999999999999999999999999998864432 223567899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=380.38 Aligned_cols=235 Identities=28% Similarity=0.339 Sum_probs=193.9
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
|+|||||||||++||+|.++.+ ..+++... ...|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-----------------------~~~~~~~~---~~~~~~~HGT~vAgiia~~~~~-- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-----------------------ARLFFAGP---GAPAPSAHGTAVASLLAGAGAQ-- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-----------------------ccccCCCC---CCCCCCCCHHHHHHHHhCCCCC--
Confidence 7899999999999999976421 11222211 3567899999999999988422
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCC---CCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhC
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNV---YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~ 305 (745)
. .||||+|+|+.+|++.... .++..++++||+||++.|++|||||||+.. ...+..++.++.++
T Consensus 53 --------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~~ 119 (239)
T cd05561 53 --------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAAR 119 (239)
T ss_pred --------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHHC
Confidence 1 5999999999999998321 267788999999999999999999999653 35677788899999
Q ss_pred CcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcC
Q 045720 306 GIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTT 384 (745)
Q Consensus 306 Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (745)
|++||+||||+|... ..+++..+++|+||+..
T Consensus 120 gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~----------------------------------------------- 152 (239)
T cd05561 120 GMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD----------------------------------------------- 152 (239)
T ss_pred CCEEEEecCCCCCCCCccCcccCCCceEEEeec-----------------------------------------------
Confidence 999999999999764 45778889999999842
Q ss_pred CCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeE
Q 045720 385 FCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTA 464 (745)
Q Consensus 385 ~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHH
Q 045720 465 ALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAA 544 (745)
Q Consensus 465 ~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 544 (745)
..+.++.||++|+.. ||.|||.+|+++.+. +.|..++|||||||||||++|
T Consensus 153 ------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~vaG~aA 203 (239)
T cd05561 153 ------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFVTAALA 203 (239)
T ss_pred ------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHHHHHHH
Confidence 123567899999876 999999999998766 379999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCC
Q 045720 545 LLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAG 592 (745)
Q Consensus 545 Ll~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 592 (745)
|++|++| ++++|||++|++||+++.. +..+..||||
T Consensus 204 ll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 204 LLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 9999999 9999999999999998743 3466789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=384.14 Aligned_cols=250 Identities=29% Similarity=0.403 Sum_probs=187.9
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccc--------cCcccCccccceeeccCCC----------------
Q 045720 147 KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL--------VGATCNNKLIGVRNFFCGK---------------- 202 (745)
Q Consensus 147 ~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~--------~~~~~~~kv~g~~~~~~~~---------------- 202 (745)
|+|+|||||||||++||+|+++ .|.+..+. +.. +-++ +.+++|....
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng-~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~ 71 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNG-YIDD-VNGWNFLGQYDPRRIVGDDPYDLTEK 71 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCC-cccc-ccCeeccCCcccccccccCccccccc
Confidence 6899999999999999999874 23222211 100 1111 2344443210
Q ss_pred ----C--CCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCC
Q 045720 203 ----D--GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV 276 (745)
Q Consensus 203 ----~--~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~ 276 (745)
+ ..+.+..+|||||||||+|...++ .| +.||||+++|+.+|++. .......++++||+||+++|+
T Consensus 72 ~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~ 142 (291)
T cd07483 72 GYGNNDVNGPISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGA 142 (291)
T ss_pred cccccccCCCCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCC
Confidence 0 023457899999999999985332 22 48999999999999987 555677889999999999999
Q ss_pred cEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------CCCCceEEecccccccceEEE
Q 045720 277 DVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT---LV--------NDAPWMLTVGASTIDRGITIS 345 (745)
Q Consensus 277 dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~ 345 (745)
+|||||||..... ....+..++.++.++|+++|+||||+|.+... ++ ...+++|+||+....
T Consensus 143 ~IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------ 215 (291)
T cd07483 143 KVINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------ 215 (291)
T ss_pred cEEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------
Confidence 9999999975322 23456777788999999999999999865321 11 223567777764211
Q ss_pred EEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeec
Q 045720 346 VRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMND 425 (745)
Q Consensus 346 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~ 425 (745)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCC
Q 045720 426 ELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPG 505 (745)
Q Consensus 426 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG 505 (745)
.....++.||++|+. +|||+|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 011246889999974 46999999
Q ss_pred ccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 506 LNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 506 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 239 ~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999876 37999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=379.64 Aligned_cols=242 Identities=31% Similarity=0.437 Sum_probs=198.2
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCC-CCCCCChhHHHHhhcccCcC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSA-IDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~-~d~~gHGThVAGiiag~~~~ 226 (745)
||+|||||||||++||+|..... ..+.++.+.++|.+... .. .|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------~~~~~i~~~~~~~~~~~-~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------FKNLRILGEYDFVDNSN-NTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------ccCCceeeeecCccCCC-CCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999952110 02345777788877654 33 6789999999999998742
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC------------
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVY---CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY------------ 291 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~------------ 291 (745)
+.+.||||+|+|+.+|+.. ... .....++.+++|+.+.+++|||||||.......
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~ 132 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGK 132 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccccc
Confidence 2258999999999999876 322 345678999999999999999999998642211
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCC---CCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPN---HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
...+.+++.++.++|+++|+||||+|.. ...+++..+++|+||+..
T Consensus 133 ~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------- 181 (261)
T cd07493 133 TSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------- 181 (261)
T ss_pred chHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-------------------------------
Confidence 2357778888999999999999999987 355678889999999841
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||+. ++++||||+|||.++++.... +.|..
T Consensus 182 ----------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~~~~~ 222 (261)
T cd07493 182 ----------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------GNITY 222 (261)
T ss_pred ----------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------CcEEe
Confidence 112567899999987 789999999999999986544 37899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 223 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 223 ANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=386.84 Aligned_cols=221 Identities=26% Similarity=0.342 Sum_probs=166.7
Q ss_pred CCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccC
Q 045720 207 IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFG 284 (745)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (745)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+ .....+++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985322 23489999999999999873223 23457999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHH-HHhCCcEEEEecCCCCCCCCcc--cC-CCCceEEecccccccceEEEEEcCCCceeeeeecc
Q 045720 285 LGLSQFYDNGIAKATFE-AIRRGIFVSIAAGNSGPNHYTL--VN-DAPWMLTVGASTIDRGITISVRLGNQETYDGEALW 360 (745)
Q Consensus 285 ~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 360 (745)
..........+.+++.+ +.++|+++|+||||+|+..++. ++ ..+++|+|||......+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~------------- 320 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYS------------- 320 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccc-------------
Confidence 86432222334444444 3479999999999999876654 33 5789999999532211000000
Q ss_pred cCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccc
Q 045720 361 QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 440 (745)
T Consensus 321 -------------------------------------------------------------------------------- 320 (412)
T cd04857 321 -------------------------------------------------------------------------------- 320 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCC
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA 520 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~ 520 (745)
......+.++.||||||+. +|.+||||+|||+.|.|.-....
T Consensus 321 --------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~---- 362 (412)
T cd04857 321 --------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTL---- 362 (412)
T ss_pred --------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCC----
Confidence 0001234688999999998 79999999999999988532221
Q ss_pred CcccceeeecCCcchhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccc
Q 045720 521 NRVYTFDIVSGTSMACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~ 569 (745)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ---~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 ---QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 3789999999999999999999975 578999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=376.89 Aligned_cols=245 Identities=33% Similarity=0.428 Sum_probs=195.1
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC--CCCCCCCCCChhHHHHhhccc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK--DGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~--~~~~~d~~gHGThVAGiiag~ 223 (745)
|+||+|||||+|||++||+|.++ |+..... .+...+++.+.. ...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-------~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-------SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-------CcccccccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 1110000 000111111110 115668899999999999987
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh------------CCCcEEEeccCCCCCCCC
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE------------DGVDVLSLSFGLGLSQFY 291 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~g~dVIN~SlG~~~~~~~ 291 (745)
.... + ..||||+|+|+.+|+++ ...+...+++++++++++ .+++|||||||.... .
T Consensus 66 ~~~~--------~-~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~ 133 (264)
T cd07481 66 DGDG--------Q-QIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--D 133 (264)
T ss_pred CCCC--------C-ceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--C
Confidence 4221 1 27999999999999998 666888899999999975 689999999998643 3
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
...+..++..+.++|++||+||||++.... .+++..+++|+||+..
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------------------- 182 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------------------- 182 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC-------------------------------
Confidence 455666777888999999999999986643 2567889999999842
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||.. .++.||||+|||.+|.++.+.+ .|..
T Consensus 183 ----------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~---------~~~~ 223 (264)
T cd07481 183 ----------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG---------GYGS 223 (264)
T ss_pred ----------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC---------ceEe
Confidence 123568899999998 5799999999999999998873 7899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCC--CCHHHHHHHhhcccc
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPN--WSHAAIKSAMMTTAD 567 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~--ls~~~vk~~L~~TA~ 567 (745)
++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 224 ~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 224 SSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=379.99 Aligned_cols=332 Identities=28% Similarity=0.389 Sum_probs=256.4
Q ss_pred CCceEEEEeCCCC----CCChHHHHHhhchhccccCCC-------Cccc-CCC-ccEEEEec---ceeeEEEEEeCHHHH
Q 045720 39 GLQTYIIYVQKPE----QGDLDSWYRSFLPEATISNSS-------DHDR-NQS-SRMLYFYK---NVISGFAARLTAEEV 102 (745)
Q Consensus 39 ~~~~yIV~~~~~~----~~~~~~~~~~~l~~~~~~~~~-------~~~~-~~~-~~v~~~~~---~~~~g~s~~~~~~~i 102 (745)
.+.+|||.|++.. .+.+..+++++.........+ +... ... ..+.+.|. .+|+++.-.++.+.+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 4689999999777 455666666665544321100 0000 000 11333443 378888899999999
Q ss_pred HHhhcCCCeEEEEEcceecccc-----cCCCCccccCCCCC-------cc----cCCCCCCCeEEEEEcCCCCCCCCCCC
Q 045720 103 KAMETKKGFISARVENTLHLHT-----THTPNFLGLHRSSG-------FW----KDSNFGKGVIIGVLDTGITPGHPSFN 166 (745)
Q Consensus 103 ~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~g~~G~Gv~VaVIDtGid~~Hp~f~ 166 (745)
..++++|-++.++++..++... .+....|++.++.. -| .+-..|+||...|+||||+.+||||.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998877654 34455577654211 11 12337999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCce
Q 045720 167 DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAH 246 (745)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~ 246 (745)
++ +.|-... ...+ ...|++||||||||+|+++. .|||.+++
T Consensus 239 gR------a~wGa~i----------------~~~~---~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~ 279 (501)
T KOG1153|consen 239 GR------AIWGATI----------------PPKD---GDEDCNGHGTHVAGLIGSKT--------------FGVAKNSN 279 (501)
T ss_pred cc------eeccccc----------------CCCC---cccccCCCcceeeeeeeccc--------------cccccccc
Confidence 86 4452211 1111 46789999999999999985 79999999
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCC
Q 045720 247 LAVYKVCNPNVYCPESAVIAGIDAAIED---------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317 (745)
Q Consensus 247 l~~~kv~~~~~g~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g 317 (745)
|+++||+++++.+..+++++++|++++. +..|.|||+|+..+ -++..|+.+|.+.|+.+++||||+.
T Consensus 280 lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~AAGNe~ 355 (501)
T KOG1153|consen 280 LVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVAAGNEH 355 (501)
T ss_pred eEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEcCCCcc
Confidence 9999999955559999999999999986 47899999999744 4566777799999999999999999
Q ss_pred CCCCccc-CCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcc
Q 045720 318 PNHYTLV-NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDV 396 (745)
Q Consensus 318 ~~~~~~~-~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 396 (745)
.+.|.++ +.+..+|||||++.
T Consensus 356 eDAC~~SPass~~aITVGAst~---------------------------------------------------------- 377 (501)
T KOG1153|consen 356 EDACNSSPASSKKAITVGASTK---------------------------------------------------------- 377 (501)
T ss_pred hhhhccCcccccccEEeccccc----------------------------------------------------------
Confidence 9987664 88999999999632
Q ss_pred cceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCC
Q 045720 397 KGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGG 476 (745)
Q Consensus 397 ~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 476 (745)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCC----
Q 045720 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPN---- 552 (745)
Q Consensus 477 ~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---- 552 (745)
.+.+|.||+||+|. ||.|||.+|+|+|.++.. ....+||||||+|||||++|..++.+|.
T Consensus 378 -~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~ 441 (501)
T KOG1153|consen 378 -NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSS 441 (501)
T ss_pred -ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-------chheeecccccCcchhhhHHHhhhcCCCChHH
Confidence 23789999999999 999999999999998653 6789999999999999999999999883
Q ss_pred -----CCHHHHHHHhhcccc
Q 045720 553 -----WSHAAIKSAMMTTAD 567 (745)
Q Consensus 553 -----ls~~~vk~~L~~TA~ 567 (745)
.|+.++|..++.=..
T Consensus 442 f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 442 FANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhccCChHHhhhhhhcccc
Confidence 378888887776544
|
|
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=372.56 Aligned_cols=255 Identities=36% Similarity=0.522 Sum_probs=203.9
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccC--CCCCCCCCCCCChhHHHHhhccc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFC--GKDGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~--~~~~~~~d~~gHGThVAGiiag~ 223 (745)
|+||+|+|||+|||++||+|.+.... .+.+.. ..+....|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 111111 00115667889999999999998
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC----CCcEEEeccCCCCC-CCCCchHHHH
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED----GVDVLSLSFGLGLS-QFYDNGIAKA 298 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~-~~~~~~~~~a 298 (745)
..+. .+.+.||||+|+|+.+|+++.......++++++|+|+++. +++|||||||.... ....+.+..+
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~ 130 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQA 130 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHH
Confidence 5331 2235899999999999999833347788999999999998 99999999998753 4466788888
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 299 TFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 299 ~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+.++.++|++||+||||++.... ..++..+++|+||+...+..
T Consensus 131 ~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------------------- 175 (264)
T cd07487 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------------------- 175 (264)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------------------
Confidence 89999999999999999998775 55678899999998532210
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchh
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 536 (745)
....++.||++||+. +++.||||+|||++|++..+............|..++||||||
T Consensus 176 --------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 --------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred --------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEeccccchHH
Confidence 002468899999998 7899999999999999975542211122235789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 537 P~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|+|||++|||+|++|.+++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=375.36 Aligned_cols=261 Identities=29% Similarity=0.395 Sum_probs=202.5
Q ss_pred CcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeecc---CCCCCCCCCCCCChh
Q 045720 138 GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF---CGKDGSAIDYTGHGT 214 (745)
Q Consensus 138 ~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~---~~~~~~~~d~~gHGT 214 (745)
++|..+++|+||+|+|||||||++||+|.++....- + ......+.+. ...+....|..+|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---Y------------DPAVNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---c------------ccccCCcccccccCCcCCCCCCCCCCHH
Confidence 379999999999999999999999999997511100 0 0000111111 000114567889999
Q ss_pred HHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCch
Q 045720 215 HTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 215 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 294 (745)
||||||+|...+.....|.. .+.|+||+++|+.+|++..........++++|+|+++.|++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999999754332221111 2357999999999999983344778889999999999999999999998754445667
Q ss_pred HHHHHHHHHhC-------CcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 295 IAKATFEAIRR-------GIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 295 ~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
+..++..+.++ |++||+||||++.....+++..+++|+||+.+
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~------------------------------ 193 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD------------------------------ 193 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc------------------------------
Confidence 77788888888 99999999999988877788899999999852
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCc-cEEeeccCCCCCCCCcccce
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL-NIIAAWKTTVDPLANRVYTF 526 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y 526 (745)
..+.++.||++|+.. ||+|||. .|+++.+.... .....|
T Consensus 194 -----------------------------~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---~~~~~~ 233 (273)
T cd07485 194 -----------------------------TNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---DGGGNY 233 (273)
T ss_pred -----------------------------CCCCcCccccCCCce--------EEEeCCCCccccccccccC---CCCCCe
Confidence 113567899999876 9999999 89888765311 112478
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCC-CCHHHHHHHhhcc
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPN-WSHAAIKSAMMTT 565 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~vk~~L~~T 565 (745)
..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 234 ~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 234 EYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=365.97 Aligned_cols=233 Identities=36% Similarity=0.512 Sum_probs=197.4
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
+|..+++|+||+|||||+||+++||+|.++ +...+++.... ...|..+|||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~~--~~~d~~~HGT~vAg 71 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGGD--PDSDCNGHGTHVAG 71 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCCC--CCCCCCccHHHHHH
Confidence 677889999999999999999999999764 22234444332 35688999999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC-----CCcEEEeccCCCCCCCCCc
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED-----GVDVLSLSFGLGLSQFYDN 293 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-----g~dVIN~SlG~~~~~~~~~ 293 (745)
||+++. .||||+|+|+.+|+++.......++++++++|+++. +++|||||||... ..
T Consensus 72 iia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~ 133 (255)
T cd04077 72 TVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----ST 133 (255)
T ss_pred HHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CH
Confidence 999873 699999999999999833347788999999999987 4899999999864 45
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeE
Q 045720 294 GIAKATFEAIRRGIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPL 372 (745)
Q Consensus 294 ~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 372 (745)
.+..++.++.++|+++|+||||+|... ...++..+++|+||+...
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------------------------- 179 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------------------------
Confidence 677778889999999999999999876 456788899999998521
Q ss_pred EecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 045720 373 VYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESI 452 (745)
Q Consensus 373 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCC
Q 045720 453 KAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGT 532 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
.+.++.||++||.. ||+|||.+|.++..... ..|..++||
T Consensus 180 -------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~~~~GT 219 (255)
T cd04077 180 -------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATATLSGT 219 (255)
T ss_pred -------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEEeeCcH
Confidence 12467899999987 99999999999887432 489999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccc
Q 045720 533 SMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADT 568 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~ 568 (745)
|||||+|||++|||+|++|+++++|||++|++||++
T Consensus 220 S~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 220 SMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=365.25 Aligned_cols=242 Identities=33% Similarity=0.479 Sum_probs=205.3
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
.+.+|..+ +|+||+|+|||+|||++||+|... ++...+++.+... .+.|..+||||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~~-~~~d~~~HGT~ 73 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDS-DAMDDNGHGTH 73 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCCC-CCCCCCCcHHH
Confidence 46689998 999999999999999999998432 3344455555433 46688999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||||++...+.. .+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||... ....+
T Consensus 74 vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~ 142 (260)
T cd07484 74 VAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTAL 142 (260)
T ss_pred HHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHH
Confidence 9999998753321 248999999999999998334477889999999999999999999999863 45667
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 143 ~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------- 185 (260)
T cd07484 143 QEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------------------------- 185 (260)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------------------------
Confidence 7788888999999999999999988889999999999998521
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
.+.++.||++|+.. |++|||.+|.++.+. +.|..++|||||
T Consensus 186 ----------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~GTS~A 226 (260)
T cd07484 186 ----------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMSGTSMA 226 (260)
T ss_pred ----------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEeeeHHHH
Confidence 12457899999876 999999999998776 378999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccc
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~ 569 (745)
||+|||++||++|++| +++++||++|++||+++
T Consensus 227 ap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 227 TPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=371.98 Aligned_cols=260 Identities=27% Similarity=0.246 Sum_probs=187.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
.+|||||||||.+||+|.+.- .....+....+ ...|..+|||||||||++.....
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~~-~~~d~~gHGT~vAgiia~~~~~~- 55 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEPG-WTADDLGHGTAVAGLALYGDLTL- 55 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-----------------------ccccccccCCC-CcCCCCCChHHHHHHHHcCcccC-
Confidence 379999999999999998641 11122222111 25689999999999999764321
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCC----CCChHHHHHHHHHHHhCC---CcEEEeccCCCCCCCC--CchHHHHH
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNV----YCPESAVIAGIDAAIEDG---VDVLSLSFGLGLSQFY--DNGIAKAT 299 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~~~--~~~~~~a~ 299 (745)
....|+||+++|+.+|++...+ .....+++++|+|+++.+ ++|||||||....... ...+..++
T Consensus 56 -------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~i 128 (291)
T cd04847 56 -------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAAL 128 (291)
T ss_pred -------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHH
Confidence 1237999999999999998332 256778999999999864 4999999998753221 12455455
Q ss_pred HH-HHhCCcEEEEecCCCCCCCCc------------ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCC
Q 045720 300 FE-AIRRGIFVSIAAGNSGPNHYT------------LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIP 366 (745)
Q Consensus 300 ~~-a~~~Gv~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 366 (745)
.+ +.++|++||+||||++..... .++..+++|+|||.......... +.+
T Consensus 129 d~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~~------ 190 (291)
T cd04847 129 DQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------ARY------ 190 (291)
T ss_pred HHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------ccc------
Confidence 43 568999999999999987643 24667899999996443311000 000
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEech
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSH 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC---------
Q 045720 447 AVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD--------- 517 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~--------- 517 (745)
+.......+.||+|||.. ++.+||||+|||++|.+..+....
T Consensus 191 ---------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~ 241 (291)
T cd04847 191 ---------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTT 241 (291)
T ss_pred ---------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeec
Confidence 000001233499999998 789999999999999886442110
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 242 ~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 242 LSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 01122357999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=366.83 Aligned_cols=249 Identities=25% Similarity=0.337 Sum_probs=184.8
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
+..+|+++++|+||+|||||||||..|| |..+++. + + ..+..+......|+.|||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~----~~~~~~~~~~~~D~~gHGT~ 66 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------R----VVLAPGATDPACDENGHGTG 66 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------e----eecCCCCCCCCCCCCCcchh
Confidence 4569999999999999999999999898 7643221 0 0 01111111145688899999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC------
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ------ 289 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~------ 289 (745)
||+++ .||||+|+|+.+|+++ . ..++++++|+||++++++|||||||.....
T Consensus 67 vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 67 ESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred eeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 99875 5999999999999997 3 567799999999999999999999985321
Q ss_pred ----CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCC
Q 045720 290 ----FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDI 365 (745)
Q Consensus 290 ----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 365 (745)
.....+..++.+|.++|++||+||||++. .+|+..|++|+||++..+..-
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g----------------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG----------------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-----------------------
Confidence 12345778888899999999999999874 578999999999996432200
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEec
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccC--CCCCCCCCCCcccee----------------eeCCcc
Q 045720 446 HAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSG--RGPSRISPGILKPDI----------------IGPGLN 507 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs--~Gp~~~~~g~~KPDi----------------~APG~~ 507 (745)
.....+++ +... ..+++.|||+ +|||..
T Consensus 179 ---------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~ 224 (298)
T cd07494 179 ---------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQ 224 (298)
T ss_pred ---------------------------------cccccccccCcccc-cCCCCccCccccccCcCCcccccccccCCCcc
Confidence 00001111 1111 1246677777 479999
Q ss_pred EEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 508 IIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
|.++..... ........|..++|||||||||||++|||+|++|.|+++|||.+|++||+++.
T Consensus 225 i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 225 LDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred eeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 976543210 01112257999999999999999999999999999999999999999999774
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=365.99 Aligned_cols=257 Identities=27% Similarity=0.345 Sum_probs=189.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCC------cccccccccCc-----ccCccccceeeccCCCCCCCCCCCCChhHH
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPA------KWRGKCELVGA-----TCNNKLIGVRNFFCGKDGSAIDYTGHGTHT 216 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~------~~~~~~~~~~~-----~~~~kv~g~~~~~~~~~~~~~d~~gHGThV 216 (745)
||+|||||||||++||+|.++....... ..++....... +.+.+......+. .....+..+|||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~HGT~v 77 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFC---GSGVSPSSWHGTHV 77 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccc---cCCCCCCCCCHHHH
Confidence 7999999999999999998753211000 00000000000 0000000000000 01345678999999
Q ss_pred HHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH----------hCCCcEEEeccCCC
Q 045720 217 ASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI----------EDGVDVLSLSFGLG 286 (745)
Q Consensus 217 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~g~dVIN~SlG~~ 286 (745)
||||+|...++. .+.||||+|+|+.+|+++ ..+...+++++|++|++ .++++|||||||..
T Consensus 78 Agiiaa~~~~~~--------~~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~ 148 (285)
T cd07496 78 AGTIAAVTNNGV--------GVAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGD 148 (285)
T ss_pred HHHHhCcCCCCC--------CceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCC
Confidence 999999864221 237999999999999998 55568889999999998 45789999999986
Q ss_pred CCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCC
Q 045720 287 LSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDI 365 (745)
Q Consensus 287 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 365 (745)
... ...+..++.++.++|++||+||||++... ..+++..+++|+||+++
T Consensus 149 ~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------------------- 198 (285)
T cd07496 149 GAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD---------------------------- 198 (285)
T ss_pred CCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC----------------------------
Confidence 432 45677888899999999999999999876 66778889999999852
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEec
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC------CC
Q 045720 446 HAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD------PL 519 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~------~~ 519 (745)
..+.++.||++||.. ||+|||++|.++...... ..
T Consensus 199 -------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~ 239 (285)
T cd07496 199 -------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTT 239 (285)
T ss_pred -------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccccc
Confidence 123568899999977 999999999988765321 02
Q ss_pred CCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcc
Q 045720 520 ANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 520 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 565 (745)
......|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 240 ~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 240 SPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=357.55 Aligned_cols=250 Identities=32% Similarity=0.425 Sum_probs=187.4
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCC---CCCCCCCCCCChhHHHHhhcccC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG---KDGSAIDYTGHGTHTASTAAGNF 224 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~---~~~~~~d~~gHGThVAGiiag~~ 224 (745)
||+|||||+|||++||+|.+.- ....+|..+ ......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998641 111222210 01145678899999999999985
Q ss_pred cCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHh
Q 045720 225 VHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIR 304 (745)
Q Consensus 225 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~ 304 (745)
. .+...||||+++|+.+|++. ..++..++++++|+|+++.+++|||||||..... .+.+..++....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 3 12247999999999999998 5557889999999999999999999999986533 4556655555554
Q ss_pred -CCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCc
Q 045720 305 -RGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTT 383 (745)
Q Consensus 305 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (745)
+|++||+||||+|.....+++..+++|+||+++.+..... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999887788889999999999643221000 00
Q ss_pred CCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCe
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPT 463 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 463 (745)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHH
Q 045720 464 AALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543 (745)
Q Consensus 464 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
..........+.+|... ....|||++|||.+|+++.... .....|..++|||||||+|||++
T Consensus 169 ------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~-----~~~~~~~~~~GTS~AaP~vaG~a 230 (254)
T cd07490 169 ------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA-----NGDGQYTRLSGTSMAAPHVAGVA 230 (254)
T ss_pred ------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC-----CCCCCeeecccHHHHHHHHHHHH
Confidence 00001122233334332 4568999999999999854221 12257999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHhhcccc
Q 045720 544 ALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 544 ALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|||+|++|+|++.|||++|++||+
T Consensus 231 Al~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 231 ALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=365.41 Aligned_cols=277 Identities=27% Similarity=0.301 Sum_probs=202.7
Q ss_pred CCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhc
Q 045720 142 DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAA 221 (745)
Q Consensus 142 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiia 221 (745)
+|++|+||+|||||+|||++||+|.+.... +....++++.....+.+. ..|..+|||||||||+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~~~~~~~~~~~~~~~~----~~d~~~HGT~vAgiia 65 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTNLFHRKIVRYDSLSDT----KDDVDGHGTHVAGIIA 65 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCccCcccEEEeeccCCC----CCCCCCCcchhheeec
Confidence 589999999999999999999999764210 000133444444444432 3388999999999999
Q ss_pred ccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHH
Q 045720 222 GNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKAT 299 (745)
Q Consensus 222 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~ 299 (745)
|....... ...+.||||+|+|+.+|+++ ..+ ....++..+++++.+.+++|||||||...... ......++
T Consensus 66 ~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~~ 138 (293)
T cd04842 66 GKGNDSSS-----ISLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARAY 138 (293)
T ss_pred cCCcCCCc-----ccccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHHH
Confidence 98644221 01248999999999999998 443 55667889999999999999999999875321 23333444
Q ss_pred HHHH-h-CCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEe
Q 045720 300 FEAI-R-RGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVY 374 (745)
Q Consensus 300 ~~a~-~-~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 374 (745)
.++. + +|+++|+||||++.... ..++..+++|+||+++.......
T Consensus 139 ~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------ 188 (293)
T cd04842 139 DQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------ 188 (293)
T ss_pred HHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc------------------------------
Confidence 3433 3 89999999999998765 56788999999999644331000
Q ss_pred cCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 045720 375 PDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 375 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|..
T Consensus 189 ---------~~~~~------------------------------------------------------------------ 193 (293)
T cd04842 189 ---------EGGLG------------------------------------------------------------------ 193 (293)
T ss_pred ---------ccccc------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcc
Q 045720 455 YINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534 (745)
Q Consensus 455 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.....+.++.||++||+. ++++||||+|||.+|+++..............|..++||||
T Consensus 194 -------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~ 252 (293)
T cd04842 194 -------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSM 252 (293)
T ss_pred -------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHH
Confidence 012234689999999998 68999999999999999975421111222357899999999
Q ss_pred hhHHHHHHHHHHHhhCC--------CCCHHHHHHHhhcccc
Q 045720 535 ACPHLSGVAALLKSAHP--------NWSHAAIKSAMMTTAD 567 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p--------~ls~~~vk~~L~~TA~ 567 (745)
|||+|||++|||+|++| .+++.++|++|++||+
T Consensus 253 AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 253 ATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999854 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=352.94 Aligned_cols=240 Identities=30% Similarity=0.385 Sum_probs=191.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
|+|||||+|||++||+|.++. +++..+++..... ...|..+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~-~~~~~~~HGT~vAgiiag~~~~~- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNND-PTSDIDGHGTACAGVAAAVGNNG- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCCC-CCCCCCCCHHHHHHHHHhccCCC-
Confidence 689999999999999998630 1122223332221 45788999999999999985322
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCCCchHHHHHHHHHh-CC
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS-QFYDNGIAKATFEAIR-RG 306 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~~~~~~~a~~~a~~-~G 306 (745)
..+.||||+|+|+.+|+++....+...++.++++|+++.+++|||||||.... ......+..++.++.+ +|
T Consensus 58 -------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~g 130 (242)
T cd07498 58 -------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKG 130 (242)
T ss_pred -------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCC
Confidence 22489999999999999983334678889999999999999999999998643 2345667777778888 99
Q ss_pred cEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCC
Q 045720 307 IFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFC 386 (745)
Q Consensus 307 v~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 386 (745)
+++|+||||+|.....+++..+++|+||+.+.
T Consensus 131 vliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------------------ 162 (242)
T cd07498 131 GVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------------------------ 162 (242)
T ss_pred eEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------------------------------
Confidence 99999999999887777889999999998521
Q ss_pred CCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEE
Q 045720 387 SPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAAL 466 (745)
Q Consensus 387 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 466 (745)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHH
Q 045720 467 VMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALL 546 (745)
Q Consensus 467 ~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 546 (745)
.+.+++||++||.. |++|||.++.+.............+.|..++|||||||+|||++|||
T Consensus 163 -----------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All 223 (242)
T cd07498 163 -----------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALI 223 (242)
T ss_pred -----------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHH
Confidence 12567899999987 99999999988754321112223357899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHhhcc
Q 045720 547 KSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 547 ~q~~p~ls~~~vk~~L~~T 565 (745)
+|++|+|+++|||++|++|
T Consensus 224 ~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 224 LSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.17 Aligned_cols=266 Identities=29% Similarity=0.386 Sum_probs=187.1
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhh
Q 045720 141 KDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTA 220 (745)
Q Consensus 141 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGii 220 (745)
..+++|+||+|||||+|||++||+|.++. +...+|.+.. ...|..+|||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~--~~~d~~gHGT~VAgii 56 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-----------------------ITTKSFVGGE--DVQDGHGHGTHCAGTI 56 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-----------------------ccCcccCCCC--CCCCCCCcHHHHHHHH
Confidence 45789999999999999999999998642 1223344332 3568899999999999
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC----------C
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ----------F 290 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~----------~ 290 (745)
+|+..+ +...||||+|+|+.+|++.........+++++|+||++.|++|||||||..... .
T Consensus 57 ag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~ 127 (297)
T cd07480 57 FGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLA 127 (297)
T ss_pred hcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCch
Confidence 997533 223699999999999999744557777899999999999999999999985411 1
Q ss_pred CCchHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----CCCCceEEecccccccceEEEEEcCC
Q 045720 291 YDNGIAKATFEA---------------IRRGIFVSIAAGNSGPNHYTLV-----NDAPWMLTVGASTIDRGITISVRLGN 350 (745)
Q Consensus 291 ~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~~ 350 (745)
....+......+ .++|++||+||||++....... ...+++++|++..
T Consensus 128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~------------- 194 (297)
T cd07480 128 FSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG------------- 194 (297)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC-------------
Confidence 112233222333 6799999999999986543221 1122333333211
Q ss_pred CceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCc
Q 045720 351 QETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGD 430 (745)
Q Consensus 351 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~ 430 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe
Q 045720 431 STLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA 510 (745)
Q Consensus 431 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s 510 (745)
..+....|+++.+. ...||||+|||.+|.+
T Consensus 195 ----------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s 224 (297)
T cd07480 195 ----------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGVDIVS 224 (297)
T ss_pred ----------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCCCeEe
Confidence 00111223333322 2457899999999999
Q ss_pred eccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccC
Q 045720 511 AWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVG 590 (745)
Q Consensus 511 a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G 590 (745)
+.+. +.|..++|||||||+|||++||++|++|++++.+++.+|+......... . .........+|
T Consensus 225 ~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~-----~~~~~~~~~~g 289 (297)
T cd07480 225 AAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-Q-----FAPGLDLPDRG 289 (297)
T ss_pred ecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-C-----CCCCCChhhcC
Confidence 9877 3899999999999999999999999999999988888877432221000 0 01234566899
Q ss_pred CCccCcCC
Q 045720 591 AGQVNPSK 598 (745)
Q Consensus 591 ~G~id~~~ 598 (745)
+|++++.+
T Consensus 290 ~G~~~~~~ 297 (297)
T cd07480 290 VGLGLAPA 297 (297)
T ss_pred CceeecCC
Confidence 99998753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=354.15 Aligned_cols=244 Identities=23% Similarity=0.246 Sum_probs=179.0
Q ss_pred CCCcccCC-CCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChh
Q 045720 136 SSGFWKDS-NFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGT 214 (745)
Q Consensus 136 ~~~~~~~g-~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGT 214 (745)
+..+|+.. ..|+||+|+|||+|||.+||||.++... .. ... .+.|+.+|||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----------------------~~---~~~--~~~d~~gHGT 55 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----------------------LI---SGL--TDQADSDHGT 55 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-----------------------cc---CCC--CCCCCCCCcc
Confidence 35689874 4589999999999999999999875211 00 000 2457889999
Q ss_pred HHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh----CCCcEEEeccCCCCCC-
Q 045720 215 HTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE----DGVDVLSLSFGLGLSQ- 289 (745)
Q Consensus 215 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~g~dVIN~SlG~~~~~- 289 (745)
||||||+|.. +..| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||||||.....
T Consensus 56 ~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 56 AVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred hhheeeeeec--------CCCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 9999999873 1223 37999999999999985 3456677777776 3467899999986421
Q ss_pred -----CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-CCCCceEEecccccccceEEEEEcCCC
Q 045720 290 -----FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL------------V-NDAPWMLTVGASTIDRGITISVRLGNQ 351 (745)
Q Consensus 290 -----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~g 351 (745)
.....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+.
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~----------- 189 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT----------- 189 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------
Confidence 1233455677788899999999999998753211 1 1235677887742110
Q ss_pred ceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcc
Q 045720 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDS 431 (745)
Q Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~ 431 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEee
Q 045720 432 TLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAA 511 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa 511 (745)
...++.||+|||.. ||.|||++|+++
T Consensus 190 ----------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~ 215 (277)
T cd04843 190 ----------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTT 215 (277)
T ss_pred ----------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEec
Confidence 01378999999976 999999999999
Q ss_pred ccCCCCC-CCCcccceeeecCCcchhHHHHHHHHHHHh----h-CCCCCHHHHHHHhhcccc
Q 045720 512 WKTTVDP-LANRVYTFDIVSGTSMACPHLSGVAALLKS----A-HPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 512 ~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~vk~~L~~TA~ 567 (745)
.+..... .......|..++|||||||||||++|||++ + +|+|+++|||++|++|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 216 GYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 8764311 111123457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=340.18 Aligned_cols=227 Identities=36% Similarity=0.530 Sum_probs=188.3
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHG 227 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~ 227 (745)
||+|||||+||+++||+|.++ +...++|....+....|..+|||||||||++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~ 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGV 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCCC
Confidence 799999999999999999864 222333433321155678999999999999875321
Q ss_pred CcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCc
Q 045720 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGI 307 (745)
Q Consensus 228 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv 307 (745)
.+.|+||+|+|+.+|+++........+++++++++++.+++|||||||... ....+..++..+.++|+
T Consensus 58 ---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~gi 125 (229)
T cd07477 58 ---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAGI 125 (229)
T ss_pred ---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCCC
Confidence 247999999999999998333367789999999999999999999999753 34456677778899999
Q ss_pred EEEEecCCCCCCCCcc--cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCC
Q 045720 308 FVSIAAGNSGPNHYTL--VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTF 385 (745)
Q Consensus 308 ~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (745)
++|+||||++...... ++..+++|+||+.+.
T Consensus 126 liv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------------------------- 158 (229)
T cd07477 126 LVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------------------------- 158 (229)
T ss_pred EEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------------------------
Confidence 9999999999876664 788999999998521
Q ss_pred CCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEE
Q 045720 386 CSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAA 465 (745)
Q Consensus 386 c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHH
Q 045720 466 LVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAAL 545 (745)
Q Consensus 466 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 545 (745)
.+.++.||++|+.. |+.|||.+|+++++.. .|..++|||||||+|||++||
T Consensus 159 ------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~---------~~~~~~GTS~Aap~vag~~Al 209 (229)
T cd07477 159 ------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN---------DYAYLSGTSMATPHVAGVAAL 209 (229)
T ss_pred ------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC---------CEEEEccHHHHHHHHHHHHHH
Confidence 12456899999865 9999999999998773 789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHhhcc
Q 045720 546 LKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 546 l~q~~p~ls~~~vk~~L~~T 565 (745)
|+|++|++++.+||++|++|
T Consensus 210 l~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 210 VWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=345.37 Aligned_cols=247 Identities=32% Similarity=0.439 Sum_probs=191.3
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCCCCCccccc---ccccCcccCccc---cceeeccCCCCCCCCCCCCChhHHHHhh
Q 045720 147 KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGK---CELVGATCNNKL---IGVRNFFCGKDGSAIDYTGHGTHTASTA 220 (745)
Q Consensus 147 ~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~---~~~~~~~~~~kv---~g~~~~~~~~~~~~~d~~gHGThVAGii 220 (745)
+||+|||||||||++||+|.++. |... +..+........ ...++|..... ++.|..+|||||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~HGT~va~ii 73 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDN-DPMDDNGHGTHVAGII 73 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccCCCC-CCCCCCCcHHHHHHHH
Confidence 68999999999999999999752 3211 111110001111 11222322222 5678899999999999
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHH
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATF 300 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~ 300 (745)
+|...++. .+.||||+|+|+.+|++.....++..+++++++++++.+++|||+|||.... ...+..++.
T Consensus 74 ~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~ 142 (259)
T cd07473 74 GAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIA 142 (259)
T ss_pred HCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHH
Confidence 99854322 2479999999999999983334888899999999999999999999998633 567778888
Q ss_pred HHHhCCcEEEEecCCCCCCC---CcccC--CCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 301 EAIRRGIFVSIAAGNSGPNH---YTLVN--DAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 301 ~a~~~Gv~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
++.++|+++|+||||+|... ..++. ..+++|+||+..
T Consensus 143 ~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------------------- 184 (259)
T cd07473 143 RAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------------------- 184 (259)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------------------
Confidence 99999999999999998763 34443 457899998842
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++||. +||+.|||.++++..+. ..|..++|||||
T Consensus 185 ---------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~GTS~A 227 (259)
T cd07473 185 ---------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMSGTSMA 227 (259)
T ss_pred ---------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEeccHhHH
Confidence 12345679999975 46999999999997765 479999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.16 Aligned_cols=272 Identities=37% Similarity=0.511 Sum_probs=210.5
Q ss_pred EEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccccCcccCccccceeeccCCC--CCCCCCCCCChhHHHHhhcccCcC
Q 045720 150 IIGVLDTGITPGHPSFN-DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK--DGSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 150 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~--~~~~~d~~gHGThVAGiiag~~~~ 226 (745)
+|||||+|||++||+|. ++ + ...++.+.+.|.+.. .....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 43 1 112333456666553 1156678999999999999986 2
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCC---CCCCCchHHHHHHHH
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI-EDGVDVLSLSFGLGL---SQFYDNGIAKATFEA 302 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~---~~~~~~~~~~a~~~a 302 (745)
.. .....|+||+|+|+.+|+++ ..+....+++++|++++ +.+++|||||||... .....+.+..++..+
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 11 11237999999999999987 55577888999999999 899999999998832 112334455666688
Q ss_pred HhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCC
Q 045720 303 IRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379 (745)
Q Consensus 303 ~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
.++|+++|+||||+|.... ..++..+++|+||+...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~----------------------------------------- 173 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN----------------------------------------- 173 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-----------------------------------------
T ss_pred cccCcceeecccccccccccccccccccccccccccccc-----------------------------------------
Confidence 8999999999999987764 35677789999998421
Q ss_pred CCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcC
Q 045720 380 HSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINST 459 (745)
Q Consensus 380 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHH
Q 045720 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 539 (745)
.+.++.||++|+... ++++||||+|||.+|.+.++.... ..|..++|||||||+|
T Consensus 174 ------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------~~~~~~~GTS~Aap~v 228 (282)
T PF00082_consen 174 ------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------GSYTSFSGTSFAAPVV 228 (282)
T ss_dssp ------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES------EEEEEEESHHHHHHHH
T ss_pred ------------------ccccccccccccccc-cccccccccccccccccccccccc------ccccccCcCCchHHHH
Confidence 124578999976543 679999999999999998876421 3588899999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 540 SGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 540 AG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||++||++|++|++++.+||++|++||+++...+ ....+..||||+||+++|++
T Consensus 229 ag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 229 AGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999886221 23467789999999999864
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=342.50 Aligned_cols=210 Identities=25% Similarity=0.297 Sum_probs=167.0
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC------CCCCCCCCChhHHHHh
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD------GSAIDYTGHGTHTAST 219 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~------~~~~d~~gHGThVAGi 219 (745)
+++|+|||||||||++||+|.++ +...++|....+ ....|..+||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-----------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-----------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-----------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 78999999999999999999864 111222222211 0234788999999999
Q ss_pred hcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCC------CCChHHHHHHHHHHHhCCCcEEEeccCCCCCC---C
Q 045720 220 AAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV------YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ---F 290 (745)
Q Consensus 220 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---~ 290 (745)
|+ |+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 94 899999999999998322 24567899999999999999999999986421 1
Q ss_pred CCchHHHHHHHHHhCCcEEEEecCCCCCCCC-c--ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPNHY-T--LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 291 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
....+..++.+|.++|++||+||||+|.... . .++..+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2567888888999999999999999998754 3 3467899999998532
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccccee
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFD 527 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~ 527 (745)
.+.++.||++|+.. |++|||++|+++.+... .+.|.
T Consensus 172 ------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~------~~~~~ 207 (247)
T cd07491 172 ------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPPL------SNSFV 207 (247)
T ss_pred ------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCCC------CCCee
Confidence 12567799999877 99999999999876211 14799
Q ss_pred eecCCcchhHHHHHHHHHHHhh
Q 045720 528 IVSGTSMACPHLSGVAALLKSA 549 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~ 549 (745)
.++|||||||||||++||+++.
T Consensus 208 ~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 208 THTGSSVATALAAGLAALILYC 229 (247)
T ss_pred eeccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=352.01 Aligned_cols=247 Identities=24% Similarity=0.273 Sum_probs=182.9
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-CCC--CCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-SAI--DYTGH 212 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-~~~--d~~gH 212 (745)
...+|+.+++|+||+|+|||||||++||+|.++... ...++|....+. .+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCCCCCCcccccccc
Confidence 456999999999999999999999999999864211 112333332211 222 78899
Q ss_pred hhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC---
Q 045720 213 GTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ--- 289 (745)
Q Consensus 213 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~--- 289 (745)
||||||||+|+..... ...||||+|+|+.+|+++ .. .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 87 GTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred CcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999999853221 137999999999999997 33 334445566665544 469999999976422
Q ss_pred -CCCchHHHHHHHHHh-----CCcEEEEecCCCCCCCC----cccCCCCceEEecccccccceEEEEEcCCCceeeeeec
Q 045720 290 -FYDNGIAKATFEAIR-----RGIFVSIAAGNSGPNHY----TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEAL 359 (745)
Q Consensus 290 -~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 359 (745)
........++.++.+ +|++||+||||+|.... ......+++|+|||++.
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------------------- 214 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA--------------------- 214 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC---------------------
Confidence 122334444445543 69999999999997322 12256788999998521
Q ss_pred ccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccccc
Q 045720 360 WQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSL 439 (745)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~ 439 (745)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCcc-------EEeec
Q 045720 440 PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLN-------IIAAW 512 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~-------I~sa~ 512 (745)
.+.++.||++|+.. ++.|||.. |+++.
T Consensus 215 --------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~ 248 (297)
T cd04059 215 --------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTD 248 (297)
T ss_pred --------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCC
Confidence 23567899999987 89999987 77766
Q ss_pred cCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 513 KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
.... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 249 ~~~~------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 249 LGGN------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCC------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 5521 136788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=329.49 Aligned_cols=222 Identities=24% Similarity=0.283 Sum_probs=173.8
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHG 227 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~ 227 (745)
||+|||||||||++||+|.++... |+ ..... .+....+ ...|..+|||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~~------------~~~~~-~~~~~~~-~~~d~~gHGT~vAgiia~----- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----GE------------VTIDL-EIIVVSA-EGGDKDGHGTACAGIIKK----- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----cc------------ccccc-ccccCCC-CCCCCCCcHHHHHHHHHc-----
Confidence 799999999999999999864211 00 00000 0111111 456889999999999974
Q ss_pred CcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCc
Q 045720 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGI 307 (745)
Q Consensus 228 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv 307 (745)
.+|+++|+.+|+++....+..+++++||+|+++++++|||||||..... ....+..++.++.++|+
T Consensus 57 -------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~ 122 (222)
T cd07492 57 -------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGG 122 (222)
T ss_pred -------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCC
Confidence 4599999999999833347888899999999999999999999986432 23566777788889999
Q ss_pred EEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCC
Q 045720 308 FVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCS 387 (745)
Q Consensus 308 ~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 387 (745)
++|+||||++.... +++..+++|+||+...+.
T Consensus 123 l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------------------- 154 (222)
T cd07492 123 IIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------------------- 154 (222)
T ss_pred EEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------
Confidence 99999999987543 377888999999742111
Q ss_pred CCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEE
Q 045720 388 PETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467 (745)
Q Consensus 388 ~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 467 (745)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHH
Q 045720 468 MKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLK 547 (745)
Q Consensus 468 ~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 547 (745)
.. +.+++ ++|+.|||.+|.++.+. +.|..++|||||||+|||++|||+
T Consensus 155 ------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~~All~ 202 (222)
T cd07492 155 ------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGMVALLL 202 (222)
T ss_pred ------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHHHHHHH
Confidence 00 11233 34999999999999877 378999999999999999999999
Q ss_pred hhCCCCCHHHHHHHhhcccc
Q 045720 548 SAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 548 q~~p~ls~~~vk~~L~~TA~ 567 (745)
|++|+|+++|||++|++||+
T Consensus 203 ~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 203 SEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=342.44 Aligned_cols=248 Identities=28% Similarity=0.314 Sum_probs=174.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccce-eeccCCCCCCCCCCCCChhHHHHhhcccCcC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV-RNFFCGKDGSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~-~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 226 (745)
.|+|||||||||++||+|.++-...... + ...+ ..... .......+ ...|..+|||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~-~---~~~~------~~~~~~~~~~~~~~-~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKN-L---VPKG------GYDGKEAGETGDIN-DIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccc-c---ccCC------CcCCccccccCCCC-cCCCCCCcHhHHHHHHhcCCC-
Confidence 3899999999999999998632111000 0 0000 00000 00000001 345778999999999998732
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC--------CchHHH
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY--------DNGIAK 297 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~--------~~~~~~ 297 (745)
..||||+|+|+.+|+++ ..+ ....+++++|+||++++++|||||||....... .+.+..
T Consensus 69 -----------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~ 136 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKK 136 (294)
T ss_pred -----------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHH
Confidence 15999999999999998 444 588899999999999999999999997542211 234666
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC----------------------cccCCCCceEEecccccccceEEEEEcCCCceee
Q 045720 298 ATFEAIRRGIFVSIAAGNSGPNHY----------------------TLVNDAPWMLTVGASTIDRGITISVRLGNQETYD 355 (745)
Q Consensus 298 a~~~a~~~Gv~vV~AAGN~g~~~~----------------------~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 355 (745)
++..+.++|++||+||||+|.... .+++..+++|+|||+
T Consensus 137 ~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~------------------- 197 (294)
T cd07482 137 AINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT------------------- 197 (294)
T ss_pred HHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee-------------------
Confidence 777788999999999999986542 122334455555543
Q ss_pred eeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccc
Q 045720 356 GEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQ 435 (745)
Q Consensus 356 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~ 435 (745)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCC
Q 045720 436 RNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTT 515 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
...+.++.||++|+.. +|++|||+++.......
T Consensus 198 ----------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~ 230 (294)
T cd07482 198 ----------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYG 230 (294)
T ss_pred ----------------------------------------CCCCCcCccccCCCCc-------ceEECCCCCcccccccC
Confidence 2234567899998653 59999999885322111
Q ss_pred CCC-------------CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCH-HHHHHHhhcc
Q 045720 516 VDP-------------LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH-AAIKSAMMTT 565 (745)
Q Consensus 516 ~~~-------------~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~-~~vk~~L~~T 565 (745)
... .....+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 231 KEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 100 1123357899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=330.35 Aligned_cols=242 Identities=28% Similarity=0.308 Sum_probs=186.5
Q ss_pred CCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCC-CCCCCCCCCCChhHHHHhhccc
Q 045720 145 FGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG-KDGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 145 ~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~-~~~~~~d~~gHGThVAGiiag~ 223 (745)
+|+||+|+|||+||+++||+|.+........ ..... .+....|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYY---------------------VAVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccc---------------------cccccccCCCCCCCCChHHHHHHHHhcC
Confidence 6999999999999999999998752211000 00000 0114567899999999999998
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCC-CCChHHHHHHHHHHHhCCCcEEEeccCCCCCC------------C
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV-YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ------------F 290 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~------------~ 290 (745)
..+ ..+.|+||+|+|+.+|+++... ......+.++++++++.+++|||||||..... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 533 2247999999999999998332 36677789999999999999999999987522 1
Q ss_pred CCchHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------cCCCCceEEecccccccceEEEEEcCCCceeeeeeccc
Q 045720 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL---------VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQ 361 (745)
Q Consensus 291 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 361 (745)
....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------------- 189 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------------- 189 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------
Confidence 445667777788899999999999998654332 24557889998853221
Q ss_pred CCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccce
Q 045720 362 WTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPN 441 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 441 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeec--ccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCC
Q 045720 442 VRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVA--FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPL 519 (745)
Q Consensus 442 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~ 519 (745)
.... ||++|+.. ..++++|||.+|.++.+...
T Consensus 190 --------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~--- 223 (267)
T cd04848 190 --------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG--- 223 (267)
T ss_pred --------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCCC---
Confidence 2233 48888654 24579999999999987321
Q ss_pred CCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 520 ANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 520 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
..|..++|||||||+|||++||++|++|+++++|||++|++||+
T Consensus 224 ----~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 ----NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ----CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 37899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=325.19 Aligned_cols=359 Identities=23% Similarity=0.312 Sum_probs=261.4
Q ss_pred CCceEEEEeCCCC-CCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCH-----HHHHHhhcCCCeE
Q 045720 39 GLQTYIIYVQKPE-QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTA-----EEVKAMETKKGFI 112 (745)
Q Consensus 39 ~~~~yIV~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~-----~~i~~L~~~p~V~ 112 (745)
.+.+|||.|+.-. ...+...+++.|+...... =+--........|...|.-+.++-.. -++++|..+|+|+
T Consensus 48 ve~EyIv~F~~y~~Ak~r~syi~skl~gS~Vtn---WriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKPAKDRRSYIESKLRGSGVTN---WRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEecccccchHHHHHHHHHhhcCCCCc---eeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 3678999999765 2334444455444221000 00001122233455556655554432 3588999999999
Q ss_pred EEEEcceeccccc---------------------C---------CCCccccC------------CCCCcccCCCCCCCeE
Q 045720 113 SARVENTLHLHTT---------------------H---------TPNFLGLH------------RSSGFWKDSNFGKGVI 150 (745)
Q Consensus 113 ~V~~~~~~~~~~~---------------------~---------s~~~~g~~------------~~~~~~~~g~~G~Gv~ 150 (745)
.|.|.+.+..-.. . .+..|+-. .++-+|+.|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9999876543100 0 00011110 1445999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcc
Q 045720 151 IGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANI 230 (745)
Q Consensus 151 VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 230 (745)
|||.|||+.-+||.|+. +....++.... ...|.-||||.|||+|||...
T Consensus 205 vAiFDTGl~~~HPHFrn------------------------vKERTNWTNE~--tLdD~lgHGTFVAGvia~~~e----- 253 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRN------------------------VKERTNWTNED--TLDDNLGHGTFVAGVIAGRNE----- 253 (1033)
T ss_pred EEEeecccccCCccccc------------------------hhhhcCCcCcc--ccccCcccceeEeeeeccchh-----
Confidence 99999999999999973 11122233221 456788999999999998842
Q ss_pred cccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEE
Q 045720 231 FGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFV 309 (745)
Q Consensus 231 ~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~v 309 (745)
..|.||+++|+++|||. +.. .+++..++|+.||+....||+|+|+|++. +.+.++-+.+......+|++
T Consensus 254 -------c~gfa~d~e~~~frvft-~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 254 -------CLGFASDTEIYAFRVFT-DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred -------hcccCCccceeEEEeec-cceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCcEEE
Confidence 37999999999999998 544 78889999999999999999999999973 55667776777788899999
Q ss_pred EEecCCCCCCCCcccCCC--CceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCC
Q 045720 310 SIAAGNSGPNHYTLVNDA--PWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCS 387 (745)
Q Consensus 310 V~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 387 (745)
|.|+||+|+-.++..+.+ ..||.||..
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGI--------------------------------------------------- 352 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGI--------------------------------------------------- 352 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeeccc---------------------------------------------------
Confidence 999999999877665433 355555542
Q ss_pred CCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEE
Q 045720 388 PETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467 (745)
Q Consensus 388 ~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 467 (745)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceEecCCCCCeeecccCCCCCCC----CCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHH
Q 045720 468 MKGTVIGGGSAPQVVAFSGRGPSRI----SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543 (745)
Q Consensus 468 ~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
...+.+|.|||||-+.. ..||+||||++-|.+|...... .+...+||||.|+|.|||++
T Consensus 353 --------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSVaSPVVAGav 415 (1033)
T KOG4266|consen 353 --------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSVASPVVAGAV 415 (1033)
T ss_pred --------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCcccchhhhcee
Confidence 23458999999996542 2589999999999999876555 36789999999999999999
Q ss_pred HHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 544 ALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 544 ALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
+|+.+ +.--+.|+.+|++|+..|.++... .-++||+|++|+.++.+
T Consensus 416 ~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 416 CLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 99975 334568999999999999998543 44789999999988876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.88 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=182.7
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
..||||||||++|+..+... ..||||+|+|+.+++.+..-+ .+...+.+|+..++++++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 46999999999999755432 369999999999999884334 45567899999999999999999999865
Q ss_pred -CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCccc---CCCCceEEecccccccceEEEEEcCCCceeeeeecccCC
Q 045720 288 -SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV---NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWT 363 (745)
Q Consensus 288 -~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~---~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 363 (745)
.+.....++.+-..+.++|+++|.||||.|+...+++ +....+|.|||.-......+.
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 3444455554444455899999999999999987765 345588999984211110000
Q ss_pred CCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEE
Q 045720 364 DIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVR 443 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 443 (745)
|
T Consensus 444 ------y------------------------------------------------------------------------- 444 (1304)
T KOG1114|consen 444 ------Y------------------------------------------------------------------------- 444 (1304)
T ss_pred ------h-------------------------------------------------------------------------
Confidence 0
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcc
Q 045720 444 VSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~ 523 (745)
... ..-.+.+..||||||+. ||-+-..|+|||+.|.|--.-..
T Consensus 445 ----------~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl------- 487 (1304)
T KOG1114|consen 445 ----------SVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL------- 487 (1304)
T ss_pred ----------hhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-------
Confidence 000 01123467899999999 88999999999999977433221
Q ss_pred cceeeecCCcchhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCC
Q 045720 524 YTFDIVSGTSMACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599 (745)
Q Consensus 524 ~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 599 (745)
..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.- .++.+|.|+|++++|
T Consensus 488 q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 488 QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcceeehhHH
Confidence 2567899999999999999999864 567899999999999999998543 578999999999999
Q ss_pred CC
Q 045720 600 ND 601 (745)
Q Consensus 600 l~ 601 (745)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=291.94 Aligned_cols=194 Identities=22% Similarity=0.192 Sum_probs=143.9
Q ss_pred CCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHH--HhCCCcEEEecc
Q 045720 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAA--IEDGVDVLSLSF 283 (745)
Q Consensus 206 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~g~dVIN~Sl 283 (745)
..|.++|||||||||||. .|++|+++|+..++.. . ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 358999999999999987 4677999998765533 1 233466777887 567899999999
Q ss_pred CCCCCCC------CCchHHHHHHHHHhC-CcEEEEecCCCCCCC-----CcccCCCCceEEecccccccceEEEEEcCCC
Q 045720 284 GLGLSQF------YDNGIAKATFEAIRR-GIFVSIAAGNSGPNH-----YTLVNDAPWMLTVGASTIDRGITISVRLGNQ 351 (745)
Q Consensus 284 G~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g 351 (745)
|...... ..+.+..++.++.++ |+++|+||||+|... ...+...+++|+|||......
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 234566667776666 999999999999853 234567789999998532110
Q ss_pred ceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcc
Q 045720 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDS 431 (745)
Q Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~ 431 (745)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEee
Q 045720 432 TLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAA 511 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa 511 (745)
....+.||++|.....++..||||+|||++|++
T Consensus 164 ----------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s- 196 (247)
T cd07488 164 ----------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL- 196 (247)
T ss_pred ----------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC-
Confidence 012345666543333367899999999999998
Q ss_pred ccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCH------HHHHHHhhcc
Q 045720 512 WKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH------AAIKSAMMTT 565 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~vk~~L~~T 565 (745)
+. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 197 -~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 -PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred -CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 33 37889999999999999999999999987764 4567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=272.00 Aligned_cols=233 Identities=35% Similarity=0.440 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC--CCCCCCCCChhHHHHhhcccCcC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD--GSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~--~~~~d~~gHGThVAGiiag~~~~ 226 (745)
|+|+|||+|++++||+|..... . .....++....+ ....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFG---------G-----------GDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhcccc---------C-----------cccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999998721100 0 000111111100 03457889999999999988533
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCCCCCCCchHHHHHHHHHhC
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI-EDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~ 305 (745)
.. ..|+||+++|+.+|+...........+++++++++ ..+++|||||||..... ....+...+.++.++
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~ 130 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAK 130 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 21 16999999999999998333367788999999999 89999999999987433 345667777788887
Q ss_pred -CcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCC
Q 045720 306 -GIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHS 381 (745)
Q Consensus 306 -Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (745)
|+++|+||||.+.... ..++..+++|+||+.+.+.
T Consensus 131 ~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------------- 169 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------------- 169 (241)
T ss_pred cCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------------
Confidence 9999999999998876 4778899999999863221
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCC
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSS 461 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEecceEecCCCCCeee-cccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHH
Q 045720 462 PTAALVMKGTVIGGGSAPQVV-AFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLS 540 (745)
Q Consensus 462 ~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 540 (745)
... .++++| .|||+.|||.++.+..... ...+..++|||||||+||
T Consensus 170 ------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~~-------~~~~~~~~GTS~Aap~va 216 (241)
T cd00306 170 ------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTTG-------GGGYATLSGTSMAAPIVA 216 (241)
T ss_pred ------------------CccCCcCCCC--------CCceEEeCcCCccCcccCC-------CCCeEeeccHHHHHHHHH
Confidence 111 344444 4669999999998752221 147899999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHhhcc
Q 045720 541 GVAALLKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 541 G~aALl~q~~p~ls~~~vk~~L~~T 565 (745)
|++||++|++|++++.++|++|++|
T Consensus 217 G~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 217 GVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=243.85 Aligned_cols=273 Identities=33% Similarity=0.469 Sum_probs=201.3
Q ss_pred CCCcccC--CCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCC-CCCCCCC
Q 045720 136 SSGFWKD--SNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS-AIDYTGH 212 (745)
Q Consensus 136 ~~~~~~~--g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~-~~d~~gH 212 (745)
....|.. +++|+|++|+|||+||+..||+|.+... ..++|.+..+.. ..|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV-----------------------AGGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccc-----------------------cccccccCCCCCCCCCCCCC
Confidence 3457887 8999999999999999999999986521 113444443312 5789999
Q ss_pred hhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCC-CCCChHHHHHHHHHHHhCC--CcEEEeccCCCCCC
Q 045720 213 GTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPN-VYCPESAVIAGIDAAIEDG--VDVLSLSFGLGLSQ 289 (745)
Q Consensus 213 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-~g~~~~~i~~ai~~a~~~g--~dVIN~SlG~~~~~ 289 (745)
||||+|++++.... + .....|+||+++++.+|++... .....++++++|+++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~------~-~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFD------N-GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeeccc------C-CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 99999999984211 0 1114799999999999999833 3367778899999999999 99999999986222
Q ss_pred CCCchHHHHHHHHHhCC-cEEEEecCCCCCCCC----cccCCC--CceEEecccccccceEEEEEcCCCceeeeeecccC
Q 045720 290 FYDNGIAKATFEAIRRG-IFVSIAAGNSGPNHY----TLVNDA--PWMLTVGASTIDRGITISVRLGNQETYDGEALWQW 362 (745)
Q Consensus 290 ~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 362 (745)
.....+..++..++..| +++|+|+||.+.+.. .++... +.+++||+...
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------ 314 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------ 314 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------------------
Confidence 33455666666777777 999999999987752 223322 36677766311
Q ss_pred CCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceE
Q 045720 363 TDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe-----eccCCCC
Q 045720 443 RVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA-----AWKTTVD 517 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s-----a~~~~~~ 517 (745)
.+.++.||++|+.. +.++.|||.+|.+ .+++..
T Consensus 315 -----------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~- 352 (508)
T COG1404 315 -----------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG- 352 (508)
T ss_pred -----------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCCc-
Confidence 13668899999752 2399999999988 554431
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCC-CCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHP-NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++.... .......++.|..+.
T Consensus 353 ------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 415 (508)
T COG1404 353 ------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTP-----------LSGVDNLVGGGLANL 415 (508)
T ss_pred ------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccccc-----------CCccccccccCcccc
Confidence 2499999999999999999999999999 8999999999888887400 112344667776666
Q ss_pred CCCCC
Q 045720 597 SKAND 601 (745)
Q Consensus 597 ~~Al~ 601 (745)
..+..
T Consensus 416 ~~~~~ 420 (508)
T COG1404 416 DAAAT 420 (508)
T ss_pred ccccc
Confidence 55544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=210.81 Aligned_cols=304 Identities=19% Similarity=0.212 Sum_probs=185.7
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-CCC--C--CC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-SAI--D--YT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-~~~--d--~~ 210 (745)
+..+|.+|++||+|+++|+|.||||-|||+..+ ..--..|+|..++-- .|+ | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 355999999999999999999999999999743 112234555544210 111 2 47
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
.|||.|||-+++...++... .|||.+.++..+|+++ ..+..|+++|-..--. ...+|.+-|||.....
T Consensus 209 shgtrcagev~aardngicg--------vgvaydskvagirmld---qpymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLD---QPYMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred ccCccccceeeeeccCCcee--------eeeeeccccceeeecC---CchhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 89999999988776544332 6999999999999997 3455666655322211 2478999999986532
Q ss_pred -CCCch---HHHHHHHHHh-----CCcEEEEecCCCCCCC-Cc--ccCCCCceEEecccccccceEEEEEcCCCceeeee
Q 045720 290 -FYDNG---IAKATFEAIR-----RGIFVSIAAGNSGPNH-YT--LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGE 357 (745)
Q Consensus 290 -~~~~~---~~~a~~~a~~-----~Gv~vV~AAGN~g~~~-~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 357 (745)
..+.+ ..+++-+-++ .|-++|.|.|..|.+. +. -.+.+-|.|++-+. +.+|+..
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsa-----------indg~na--- 343 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSA-----------INDGENA--- 343 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehh-----------hcCCccc---
Confidence 22222 2222222222 4568999999887542 22 22344555555432 1111100
Q ss_pred ecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccc
Q 045720 358 ALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRN 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 437 (745)
- .++-|.+
T Consensus 344 ---------------h--------ydescss------------------------------------------------- 351 (629)
T KOG3526|consen 344 ---------------H--------YDESCSS------------------------------------------------- 351 (629)
T ss_pred ---------------c--------ccchhhH-------------------------------------------------
Confidence 0 0111211
Q ss_pred ccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC
Q 045720 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD 517 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~ 517 (745)
-.-+.||+-|..+.. |+. .
T Consensus 352 -----------------------------------------tlastfsng~rnpet-----------gva--t------- 370 (629)
T KOG3526|consen 352 -----------------------------------------TLASTFSNGGRNPET-----------GVA--T------- 370 (629)
T ss_pred -----------------------------------------HHHHHhhcCCcCCCc-----------cee--e-------
Confidence 022467776655421 111 1
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCC----cccCCCCCCCCccccCCCc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGK----PILDCTRLPADLYAVGAGQ 593 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~----~~~~~~~~~~~~~~~G~G~ 593 (745)
.+.++......||||.|||-.||+.||.++++|.|+..+++.+-.-|.++..-... .+.-++-...-+..||+|.
T Consensus 371 -tdlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgv 449 (629)
T KOG3526|consen 371 -TDLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGV 449 (629)
T ss_pred -eccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeeccccccc
Confidence 12222467788999999999999999999999999999999988877766431110 0111222334556899999
Q ss_pred cCcCCCCCCCceecCCCCCcccccccCCC
Q 045720 594 VNPSKANDPGLVYDIQPDDYIPYLCGLNY 622 (745)
Q Consensus 594 id~~~Al~~~lv~d~~~~d~~~~~~~~~~ 622 (745)
+|+.+-+....-....+ -+|-|..|.
T Consensus 450 ldagamv~lak~wktvp---pryhc~ag~ 475 (629)
T KOG3526|consen 450 LDAGAMVMLAKAWKTVP---PRYHCTAGL 475 (629)
T ss_pred ccHHHHHHHHHHhccCC---Cceeecccc
Confidence 99977665332222222 245787764
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=180.70 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=81.4
Q ss_pred eeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CCCchHHHHHHHHHhCCcEEEE
Q 045720 238 AVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED---GVDVLSLSFGLGLSQ---FYDNGIAKATFEAIRRGIFVSI 311 (745)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~---~~~~~~~~a~~~a~~~Gv~vV~ 311 (745)
+.||||+|+|+.|++.+ +. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 83 ~~gvAP~a~i~~~~~~~-~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPG-TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECC-cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 57999999999999987 32 45678888888887 999999999987432 2335677788889999999999
Q ss_pred ecCCCCCCCC-----------cccCCCCceEEecccccccc
Q 045720 312 AAGNSGPNHY-----------TLVNDAPWMLTVGASTIDRG 341 (745)
Q Consensus 312 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 341 (745)
|+||+|.... .+++..|+|++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35789999999999866543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=104.29 Aligned_cols=113 Identities=28% Similarity=0.343 Sum_probs=87.5
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccccc-cccc
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTLIQ-RNSL 439 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~~ 439 (745)
.....+++|.+. |....+...+++|||+||+|+.| ..+++.+||.++|++++.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 456788888764 33445556789999999999999 777888999999999886543222211 3578
Q ss_pred ceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCC
Q 045720 440 PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSR 491 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 491 (745)
|++.|+..+|..|++++++ ++++.+..+.. ....+.++.||||||.-
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777776655 46778899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=98.28 Aligned_cols=117 Identities=44% Similarity=0.673 Sum_probs=91.2
Q ss_pred EEcCCCceeeeeecccCCCCCCCceeEEecCC-CCCCCcCCCCCCCCCCCcccceEEEEecCCc------hhhhhhcCce
Q 045720 346 VRLGNQETYDGEALWQWTDIPSKRLPLVYPDA-RNHSTTTFCSPETLKSVDVKGKVVLCQRGAS------GDDVLNAGGA 418 (745)
Q Consensus 346 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~------~~~~~~~ga~ 418 (745)
+.++|++.+.|++++.+.. ..++++|... ........|.+......+++|||+||+|+.| ..+++.+||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 5789999999999996543 4567776433 2233457898888888999999999999886 5667889999
Q ss_pred EEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEE
Q 045720 419 AMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAA 465 (745)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
|+|++++.............+|.+.|+.++|+.|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886554333333568999999999999999999988766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.9e-09 Score=114.29 Aligned_cols=286 Identities=17% Similarity=0.161 Sum_probs=176.2
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-----CCCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-----SAIDYT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-----~~~d~~ 210 (745)
....|..+++|+++.|+|.|+|++..||+.... +...+.+++....+. +.....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 466999999999999999999999999999753 223344444444322 222357
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
.|||-|++-.+....+..- ..|+++++++..++++.. ...+...+...... .-+++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~----~v~~~~~~~~~~~~~~~~di~scsw~pddd~ 148 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG----CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDG 148 (431)
T ss_pred ccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee----ecccceecccccCCCCCceeecCcCCcccCC
Confidence 8999999999987522111 279999999999999871 12222233222222 2478999999976422
Q ss_pred C----CCchHHHHHHH-----HHhCCcEEEEecCCCCCCCCccc--CCCCceEEecccccccceEEEEEcCCCceeeeee
Q 045720 290 F----YDNGIAKATFE-----AIRRGIFVSIAAGNSGPNHYTLV--NDAPWMLTVGASTIDRGITISVRLGNQETYDGEA 358 (745)
Q Consensus 290 ~----~~~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 358 (745)
. .......+..+ ...+|-+.|+|.||.|....... ...+.+.++.-...+.
T Consensus 149 ~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~------------------ 210 (431)
T KOG3525|consen 149 KTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQ------------------ 210 (431)
T ss_pred CcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccc------------------
Confidence 1 11122222222 22578899999999886644322 2222222222111110
Q ss_pred cccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccc
Q 045720 359 LWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNS 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 438 (745)
|.. .....++
T Consensus 211 ---------------------------~~~----~p~y~~~--------------------------------------- 220 (431)
T KOG3525|consen 211 ---------------------------CGK----KPQYRER--------------------------------------- 220 (431)
T ss_pred ---------------------------cCC----Ccccccc---------------------------------------
Confidence 000 0000000
Q ss_pred cceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC
Q 045720 439 LPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
-....-+.+|+.+| .. . -|..+....
T Consensus 221 -------------------------------------C~~~~~s~~s~~~~-~~--------~-----~~~~~~~~~--- 246 (431)
T KOG3525|consen 221 -------------------------------------CASCLASTYSSGGP-TE--------E-----CIVCTDPRH--- 246 (431)
T ss_pred -------------------------------------ccccccccccCCCC-cc--------e-----eeeecCCCc---
Confidence 00113356788887 31 0 112222211
Q ss_pred CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCC
Q 045720 519 LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSK 598 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~ 598 (745)
..-.-..|||.++|+.||+.+|.++++|.++..++..+...++.........++.+.........+|+|++|+..
T Consensus 247 -----~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~ 321 (431)
T KOG3525|consen 247 -----SCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKA 321 (431)
T ss_pred -----cccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcch
Confidence 244556799999999999999999999999999999999999987765444444444334445589999999876
Q ss_pred CCC
Q 045720 599 AND 601 (745)
Q Consensus 599 Al~ 601 (745)
-+.
T Consensus 322 ~~~ 324 (431)
T KOG3525|consen 322 LVS 324 (431)
T ss_pred hhh
Confidence 655
|
|
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=85.11 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=55.1
Q ss_pred eEEEEeCCCC-----CCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEE
Q 045720 42 TYIIYVQKPE-----QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARV 116 (745)
Q Consensus 42 ~yIV~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~ 116 (745)
+|||+|+++. ...+..++.+++++..... .....++.+.|...|+||+++++++++++|+++|+|++|+|
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~ 75 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSA-----SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEP 75 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhh-----cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEe
Confidence 6999999986 2345556665544421100 14588999999988999999999999999999999999999
Q ss_pred cceeccc
Q 045720 117 ENTLHLH 123 (745)
Q Consensus 117 ~~~~~~~ 123 (745)
|+.++++
T Consensus 76 D~~v~l~ 82 (82)
T PF05922_consen 76 DQVVSLH 82 (82)
T ss_dssp ECEEEE-
T ss_pred CceEecC
Confidence 9988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=84.43 Aligned_cols=87 Identities=24% Similarity=0.349 Sum_probs=60.3
Q ss_pred eeecCCcCEEEEEEEEecCCCceeEEEEEeCC--------CC----------e-EEEEEcCeEEeccCCcEEEEEEEEEe
Q 045720 654 SIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAP--------EG----------V-EITVQPHNISFAAKNQKVTYSVTFTR 714 (745)
Q Consensus 654 ~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~~p--------~~----------~-~v~v~p~~~~~~~~~~~~~~~vt~~~ 714 (745)
++.......++++||+|.|+...+|++++... .| . .+...+.+|++++ |++++|+|+|+.
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~ 80 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE-
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEe
Confidence 34434446899999999999999999987610 11 1 6777899999999 999999999999
Q ss_pred cCC---CCCCeEEEEEEEEc-Cc-eeEEeeEE
Q 045720 715 TGN---TNASSAQAYLSWVS-DK-YTVKSPIA 741 (745)
Q Consensus 715 ~~~---~~~~~~~G~~~~~~-~~-~~v~~P~~ 741 (745)
+.. ....+++|+|.|++ +. +.+++||.
T Consensus 81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 663 33589999999994 44 49999984
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=101.44 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=58.3
Q ss_pred eeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCC-CcEEEeccCCCC-----CCCCCchHHHHHHHHHhCCcEEEE
Q 045720 238 AVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDG-VDVLSLSFGLGL-----SQFYDNGIAKATFEAIRRGIFVSI 311 (745)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-~dVIN~SlG~~~-----~~~~~~~~~~a~~~a~~~Gv~vV~ 311 (745)
..-+||+|+|..|-.-. ........|+.+....= --+|-.||+... .+.+-+.+......|..+|+.+++
T Consensus 288 s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 36799999999986622 12222223333222211 134445666532 111334455556678899999999
Q ss_pred ecCCCCCCCCc--------ccCCCCceEEecc
Q 045720 312 AAGNSGPNHYT--------LVNDAPWMLTVGA 335 (745)
Q Consensus 312 AAGN~g~~~~~--------~~~~~p~vitVga 335 (745)
|+|.+|....+ +++.+|++++||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999866532 4578999999997
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=77.85 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=69.2
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc---cc--cccc
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST---LI--QRNS 438 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~---~~--~~~~ 438 (745)
.-++++.+. ...+.|.+..+...+++|||+||+|+.| ..+++++||.++|++|+....... .. ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 345666432 1237798888887899999999999999 678999999999999876532111 11 2446
Q ss_pred cceEEechhhHHHHHHHHHcCCCC
Q 045720 439 LPNVRVSHAVSESIKAYINSTSSP 462 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~ 462 (745)
+|.+.|+..+|+.|++++..+.+.
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~v 118 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGETL 118 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCEE
Confidence 999999999999999999876543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=73.99 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=68.2
Q ss_pred eeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-cccccccceEE
Q 045720 370 LPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-LIQRNSLPNVR 443 (745)
Q Consensus 370 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-~~~~~~~p~~~ 443 (745)
+|++..........+.|.+...+..+++|||+|++|+.| ..+++.+||.++|++|+....... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 676665544445668898876666689999999999999 788999999999999886443221 12233456666
Q ss_pred echhhHHHHHHHHHcCCCC
Q 045720 444 VSHAVSESIKAYINSTSSP 462 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~ 462 (745)
+ .++|+.|++.+..+...
T Consensus 108 ~-~~~G~~l~~~l~~G~~v 125 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNV 125 (129)
T ss_pred e-HHHHHHHHHHHhcCCeE
Confidence 6 99999999999876543
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.3e-06 Score=75.05 Aligned_cols=82 Identities=27% Similarity=0.332 Sum_probs=63.5
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccc----ccccccceEEechhhHHHH
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTL----IQRNSLPNVRVSHAVSESI 452 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 452 (745)
..+.|.+... ..+++|||+||+|+.| ..+++.+||.++|++++........ .....+|++.|+.++|..|
T Consensus 26 ~~~~C~~~~~-~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTN-AAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCc-CCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 4567988776 3569999999999988 6678889999999998865421111 1234799999999999999
Q ss_pred HHHHHcCCCCeE
Q 045720 453 KAYINSTSSPTA 464 (745)
Q Consensus 453 ~~~~~~~~~~~~ 464 (745)
++|+..+...++
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999987765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.9e-06 Score=74.37 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-cccc-------ccccccceEEechhhH
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-DSTL-------IQRNSLPNVRVSHAVS 449 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-~~~~-------~~~~~~p~~~i~~~~g 449 (745)
.+.|.+.. ...+++|+|+|++||.| ..+++.+||.++|++|+.... .... ...-.+|++.|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 36798644 35689999999999999 778999999999999876442 1111 1234799999999999
Q ss_pred HHHHHHHHcCCCCeEEE
Q 045720 450 ESIKAYINSTSSPTAAL 466 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i 466 (745)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776655
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-06 Score=76.66 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred cCCCCCCCC--CCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccc----ccccccceEEechhhHHH
Q 045720 383 TTFCSPETL--KSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTL----IQRNSLPNVRVSHAVSES 451 (745)
Q Consensus 383 ~~~c~~~~~--~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 451 (745)
.+.|.+... .+.++.|+|+|++||.| ..+++.+||.++|++|+...+.... .....+|.+.|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 467988776 56789999999999999 7889999999999999876222111 123478999999999999
Q ss_pred HHHHHHcCCCCeEE
Q 045720 452 IKAYINSTSSPTAA 465 (745)
Q Consensus 452 l~~~~~~~~~~~~~ 465 (745)
|++++..+.+.+++
T Consensus 124 l~~~l~~G~~Vtv~ 137 (138)
T cd02122 124 ILELLERGISVTMV 137 (138)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999887665543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=72.87 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=67.3
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcc----ccccccc
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDS----TLIQRNS 438 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~----~~~~~~~ 438 (745)
..+|++.... ...|.+..+.+.+++|||+|++||.| ..+++.+||.++|++|+...... .......
T Consensus 20 ~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCC-----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 4566666553 36799888888899999999999999 78899999999999998652111 1113456
Q ss_pred cceEEechhhHHHHHHHHHc
Q 045720 439 LPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~ 458 (745)
||++.|+.++|+.|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999888753
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4e-06 Score=73.89 Aligned_cols=73 Identities=33% Similarity=0.455 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC----CCccccccccccceEEechhhHHHHHH
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL----FGDSTLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|.+......+++|||+||+|+.| ..+++.+||.++|+++... ...........+|++.|+.++|+.|++
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred ccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 3466677888899999999999999 8899999999999999211 112223346789999999999999998
Q ss_pred HH
Q 045720 455 YI 456 (745)
Q Consensus 455 ~~ 456 (745)
|+
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 85
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=72.83 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcc----ccccccccceEEechhhHHHHHH
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDS----TLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|.+..+ +.+++|||+|++|+.| ..+++.+||.++|++|+...+.. ...+...+|++.|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35876554 3579999999999999 77899999999999988633221 11124579999999999999999
Q ss_pred HHHcCCCCeE
Q 045720 455 YINSTSSPTA 464 (745)
Q Consensus 455 ~~~~~~~~~~ 464 (745)
.+.++.+.++
T Consensus 111 ~l~~g~~v~~ 120 (122)
T cd02130 111 ALANGGEVSA 120 (122)
T ss_pred HHhcCCcEEE
Confidence 9988776544
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=73.01 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=62.9
Q ss_pred cCCCCCCC--CCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCc-c-cc----ccccccceEEechhhH
Q 045720 383 TTFCSPET--LKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGD-S-TL----IQRNSLPNVRVSHAVS 449 (745)
Q Consensus 383 ~~~c~~~~--~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~-~-~~----~~~~~~p~~~i~~~~g 449 (745)
...|.+.. +...+++|||+||+|+.| ..+++.+||.|+|++++..... . .. .....+|.+.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 667889999999999988 7778889999999998865321 1 11 1345799999999999
Q ss_pred HHHHHHHHcCCCC
Q 045720 450 ESIKAYINSTSSP 462 (745)
Q Consensus 450 ~~l~~~~~~~~~~ 462 (745)
+.|++++.++.+.
T Consensus 110 ~~l~~~~~~~~~v 122 (126)
T cd00538 110 EALLSLLEAGKTV 122 (126)
T ss_pred HHHHHHHhcCCce
Confidence 9999999875543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=72.70 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-----ccc----c---ccccccceEEec
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-----DST----L---IQRNSLPNVRVS 445 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-----~~~----~---~~~~~~p~~~i~ 445 (745)
.+.|.+... +.+++|||+|++||.| ..+++.+||.++|++|+.... ... . .+...||++.|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 367976544 5679999999999999 788999999999999875432 111 0 123579999999
Q ss_pred hhhHHHHHHHHHcCCCCe
Q 045720 446 HAVSESIKAYINSTSSPT 463 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~ 463 (745)
..+|+.|++.+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-05 Score=70.23 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=61.7
Q ss_pred cCCCCCCCCC--CC----cccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-----------cccccccc
Q 045720 383 TTFCSPETLK--SV----DVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-----------LIQRNSLP 440 (745)
Q Consensus 383 ~~~c~~~~~~--~~----~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-----------~~~~~~~p 440 (745)
.+.|.+.... +. ...++|+|++||.| ..+++.+||.++|++|+....... ..+.-.+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578766553 22 37889999999999 788999999999999986532111 11233699
Q ss_pred eEEechhhHHHHHHHHHcCCCCeE
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTA 464 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
++.|+..+|+.|+..+..+...++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999988765443
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=71.96 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=61.2
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccccc------cccccceEEechhhHHH
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTLI------QRNSLPNVRVSHAVSES 451 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~~------~~~~~p~~~i~~~~g~~ 451 (745)
.+.|.+.. .+++|+|+|++||.| ..+++++||.++|++|+......... ....||++.|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 36798754 479999999999999 88899999999999987643211111 13579999999999999
Q ss_pred HHHHHHcCCCCe
Q 045720 452 IKAYINSTSSPT 463 (745)
Q Consensus 452 l~~~~~~~~~~~ 463 (745)
|++.+.++...+
T Consensus 125 L~~~l~~g~~Vt 136 (139)
T cd02132 125 LNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHcCCcEE
Confidence 999998876544
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.3e-05 Score=67.59 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=59.3
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-ccc-c----ccccccceEEechhhHH
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-DST-L----IQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-~~~-~----~~~~~~p~~~i~~~~g~ 450 (745)
..+.|.+. +..+++|||+|++||.| ..+++.+||.++|++|+.... ... . .+...+|++.|+.++|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679765 55789999999999999 788999999999999876532 111 1 22347999999999999
Q ss_pred HHHHHHHc
Q 045720 451 SIKAYINS 458 (745)
Q Consensus 451 ~l~~~~~~ 458 (745)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988754
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.6e-05 Score=68.91 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=53.9
Q ss_pred CCCCcccceEEEEecCCc----------hhhhhhcCceEEEEeecCC-CCc-c-cccc---ccccceEEechhhHHHHHH
Q 045720 391 LKSVDVKGKVVLCQRGAS----------GDDVLNAGGAAMILMNDEL-FGD-S-TLIQ---RNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 391 ~~~~~~~gkivl~~~~~~----------~~~~~~~ga~~~i~~~~~~-~~~-~-~~~~---~~~~p~~~i~~~~g~~l~~ 454 (745)
+...+++|||+|++|+.| .++++++||.++|+||+.. .+. . ...+ ...+|++.|+.++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445689999999999988 4678889999999999962 221 1 1122 4589999999999999999
Q ss_pred HHHcC
Q 045720 455 YINST 459 (745)
Q Consensus 455 ~~~~~ 459 (745)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=69.28 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=63.0
Q ss_pred cCCCCCCCCCC---CcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-cc-----cccccceEEechhh
Q 045720 383 TTFCSPETLKS---VDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-LI-----QRNSLPNVRVSHAV 448 (745)
Q Consensus 383 ~~~c~~~~~~~---~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-~~-----~~~~~p~~~i~~~~ 448 (745)
.++|.+....+ .+..|+|+|++||.| ..+++.+||.++|++|+....... .. ....||++.|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798776644 789999999999999 888999999999999986532221 11 13479999999999
Q ss_pred HHHHHHHHHcCCC
Q 045720 449 SESIKAYINSTSS 461 (745)
Q Consensus 449 g~~l~~~~~~~~~ 461 (745)
|..|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=61.15 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-------hhhhhhcCceEEEEeecCCCCccc-----c-
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-------GDDVLNAGGAAMILMNDELFGDST-----L- 433 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-------~~~~~~~ga~~~i~~~~~~~~~~~-----~- 433 (745)
....+++|.+... +..+...+++|||++++++.+ ..+++.+||.++|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3567888876431 223345679999999999876 678888999999999875442211 1
Q ss_pred -ccccccceEEechhhHHHHHHHHHcCC
Q 045720 434 -IQRNSLPNVRVSHAVSESIKAYINSTS 460 (745)
Q Consensus 434 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
.....+|++.|+.+||..|.+.+..+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998744
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=58.92 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred CCCcccceEEEEecCCc------------------hhhhhhcCceEEEEeecCC-------CCcccc-ccccccceEEec
Q 045720 392 KSVDVKGKVVLCQRGAS------------------GDDVLNAGGAAMILMNDEL-------FGDSTL-IQRNSLPNVRVS 445 (745)
Q Consensus 392 ~~~~~~gkivl~~~~~~------------------~~~~~~~ga~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i~ 445 (745)
...+++|||+++.++.| ...++.+||.++|+++... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 5788899999999998532 222222 223469999999
Q ss_pred hhhHHHHHHHHHcCCCCe
Q 045720 446 HAVSESIKAYINSTSSPT 463 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~ 463 (745)
.+++..|.+.+..+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999998775443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.057 Score=47.43 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=65.1
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEcCceeEEe
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKS 738 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~ 738 (745)
+...+.+++|+|.|..+..|++.........++++|..-.+.+ |++.+++|+|.+.... +.+.+.|.+.-++..+.+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEE
Confidence 3356778899999999999998765433556788888777888 9999999999965554 467899998877778888
Q ss_pred eEEEEe
Q 045720 739 PIAISF 744 (745)
Q Consensus 739 P~~v~~ 744 (745)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 886653
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.16 Score=42.30 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=37.7
Q ss_pred cCEEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEEcCeEE-eccCCcEEEEEEEEEecCCC
Q 045720 660 SPQTYHRTVTNVGKAK-SFYTRQMVAPEGVEITVQPHNIS-FAAKNQKVTYSVTFTRTGNT 718 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~-~ty~~~~~~p~~~~v~v~p~~~~-~~~~~~~~~~~vt~~~~~~~ 718 (745)
...+++++|+|.|... ...+++...|.|-++...|.++. +++ |++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCCC
Confidence 4678999999999765 45888888999988877777764 555 9999999999998763
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.75 Score=41.58 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=42.1
Q ss_pred CEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCC
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNT 718 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 718 (745)
...++++|+|.++.+.+|++++..++|+++......+.+.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56889999999999999999999988999966558899988 9999999999988764
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.44 Score=43.36 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=56.5
Q ss_pred eeeeecCC-cCEEEEEEEEecCCCceeEEEEEeC----CCC--------------eE------EEEEcCeEEeccCCcEE
Q 045720 652 SFSIKLGY-SPQTYHRTVTNVGKAKSFYTRQMVA----PEG--------------VE------ITVQPHNISFAAKNQKV 706 (745)
Q Consensus 652 s~~~~~~~-~~~~~~~tv~N~g~~~~ty~~~~~~----p~~--------------~~------v~v~p~~~~~~~~~~~~ 706 (745)
.|.+.... ..++++++|+|.++.+.+|.+.+.. ..| +. ++ .|..+++++ ++++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEECC-CCEE
Confidence 45555443 4799999999999999999987641 111 01 11 244588888 9999
Q ss_pred EEEEEEEecCCCCCCeEEEEEEEE
Q 045720 707 TYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 707 ~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+++++|+.+...-.+.+-|.|.++
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999886667888888876
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.14 Score=49.74 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=50.3
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCc------------------ccc------------c---
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGD------------------STL------------I--- 434 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~------------------~~~------------~--- 434 (745)
..+++|||+|++++.| ..+++.+||+|+|+|++..... .+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 5689999999999988 7888999999999998842100 000 0
Q ss_pred -cccccceEEechhhHHHHHHHHHc
Q 045720 435 -QRNSLPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 435 -~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.-..||+.-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 123589999999999999998754
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.22 Score=46.24 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=44.9
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----------------hhhhhhcCceEEEEeecCCC
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----------------GDDVLNAGGAAMILMNDELF 428 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------~~~~~~~ga~~~i~~~~~~~ 428 (745)
..-+++|.+.... ...|....+...|++|||+|+.++.| .+++..+||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567777765432 24577667778899999999998774 56778899999999998543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.39 Score=44.83 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=44.6
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----------------------hhhhhhcCceEEEEe
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----------------------GDDVLNAGGAAMILM 423 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------------~~~~~~~ga~~~i~~ 423 (745)
....|+||.+..-. ...|....+...|++|||+|+.++.| ...++.+||.++|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888775422 24577778888899999999988754 446777999999999
Q ss_pred ecCC
Q 045720 424 NDEL 427 (745)
Q Consensus 424 ~~~~ 427 (745)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.5 Score=44.65 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=43.4
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCC------------------c-----hhhhhhcCceEEEEee
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA------------------S-----GDDVLNAGGAAMILMN 424 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-----~~~~~~~ga~~~i~~~ 424 (745)
..-++||.+.... ...|....+...|++|||+|+.|+. | ..++..+||.++|+++
T Consensus 20 vtg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3567777765421 2446666677889999999998773 2 6677889999999999
Q ss_pred cCCC
Q 045720 425 DELF 428 (745)
Q Consensus 425 ~~~~ 428 (745)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.1 Score=49.32 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCC------CccccccccccceEEechhhHHHHHHHHHcCCC
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELF------GDSTLIQRNSLPNVRVSHAVSESIKAYINSTSS 461 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
...+++|++++.||.| ...++.+||.++++.|+..+ ++......-.||++.+..+++..+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4568999999999999 77888999999999998432 222333456899999999999999886666655
Q ss_pred CeEEEE
Q 045720 462 PTAALV 467 (745)
Q Consensus 462 ~~~~i~ 467 (745)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 554443
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.8 Score=36.47 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=49.1
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeC---CC----CeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVA---PE----GVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~---p~----~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
.+..+.+++|+|.++.+..+.+.+.. .. .-.+-++|..+.+.+ |+++++.| +.....+.+....=+|.+.
T Consensus 13 ~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 13 ESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 34567789999999988888877764 11 125779999999999 99999999 6644433333333456665
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.75 Score=46.34 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=39.4
Q ss_pred CceeEEecCCCCCCCcCCCCCCCC-----CCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETL-----KSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL 427 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~ 427 (745)
..-+++|.+. |....+ ...+++|||+|++++.+ ..+++.+||+|+|++++..
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4567777664 333322 25689999999999877 7788899999999999853
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.83 Score=42.79 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred CcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC
Q 045720 394 VDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL 427 (745)
Q Consensus 394 ~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~ 427 (745)
-+++|||+|++.|.. +++++..||+|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999998776 8899999999999998843
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.21 E-value=6.9 Score=43.18 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=57.8
Q ss_pred CcCEEEEEEEEecCCCcee-EEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 659 YSPQTYHRTVTNVGKAKSF-YTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~t-y~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+..++....+.|.|+.+.| -++++..|.|-++.|+|.++---++|++.++++|++++.....+-++=+|+-+
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 3478889999999998754 67899999999999999876544559999999999999876545555556655
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.25 E-value=1.5 Score=40.70 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=68.4
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc----------c
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST----------L 433 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~----------~ 433 (745)
.++++.... ..+|... .+.-+..|.+++++||+| ..+++.+||..+|+.++....... .
T Consensus 65 ~~~lV~adP-----p~aC~el-rN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLADP-----PHACEEL-RNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred CcceeecCC-----hhHHHHH-hhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 455555443 4557543 344568899999999999 678889999999987664433221 1
Q ss_pred ccccccceEEechhhHHHHHHHHHcCCCCeEEEEecc
Q 045720 434 IQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKG 470 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
-+...+|.+.+-..+|.-++.-+.....+.+.|..+.
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 2356899999999999888888877777777766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 745 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 4e-98 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-92 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 3e-12 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 8e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 8e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 8e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 1e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 1e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 1e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 3e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 4e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 4e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 4e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 4e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 4e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 4e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 4e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 4e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 5e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 5e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 5e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 6e-06 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 8e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 2e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-05 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 6e-05 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 7e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 7e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 7e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 7e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 7e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 7e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 7e-05 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 2e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 2e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-04 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 8e-04 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 615 bits (1587), Expect = 0.0
Identities = 240/638 (37%), Positives = 349/638 (54%), Gaps = 38/638 (5%)
Query: 124 TTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL 183
TT + +FLG + S +++GVLDTGI P PSF+DEG PPP KW+G CE
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 184 VGA-TCNNKLIGVRNFF------CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANG 236
CN K+IG R++ G D GHGTHTASTAAG V AN++G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 237 TAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ-FYDNGI 295
TA G PLA +A YKVC + C ++ ++A D AI DGVD++SLS G + ++ + I
Sbjct: 119 TARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYD 355
A +F A+ RGI S +AGN GPN +T + +PW+L+V AST+DR V++GN +++
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 356 GEALWQWTDIPSKRLPLVY-PDARNHSTTT----FCSPETLKSVDVKGKVVLCQRGASGD 410
G ++ + ++ PLV D N FC+ +++ +KGK+V+C+
Sbjct: 238 GVSINTF---DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH 294
Query: 411 D-VLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMK 469
+ + GAA +LM LP+ + + YI S SP A + K
Sbjct: 295 EFFKSLDGAAGVLMTS---NTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGA-TIFK 350
Query: 470 GTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYT-FDI 528
T I SAP VV+FS RGP+R + ++KPDI GPG+ I+AAW + R T F+I
Sbjct: 351 STTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNI 410
Query: 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYA 588
+SGTSM+CPH++G+A +K+ +P WS AAIKSA+MTTA +N P + +A
Sbjct: 411 ISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE--------FA 462
Query: 589 VGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAEL 648
G+G VNP KA PGLVYD DY+ +LCG Y + V+ I C ++ +L
Sbjct: 463 YGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDL 522
Query: 649 NYPSFSIKLGYS---PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQK 705
NYPSF + + S Q ++RT+T+V S Y + AP+G+ I+V P+ +SF +
Sbjct: 523 NYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDR 582
Query: 706 VTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAIS 743
++++T G+ A L W + V+SPI I+
Sbjct: 583 KSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITIT 618
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 614 bits (1584), Expect = 0.0
Identities = 241/652 (36%), Positives = 344/652 (52%), Gaps = 41/652 (6%)
Query: 124 TTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL 183
TTHT +FL L+ SSG W S G+ VI+ VLD+GI P SF D+GMP P +W+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 184 VGAT----CNNKLIGVRNFFCGKD----------GSAIDYTGHGTHTASTAAGNFVHGAN 229
CN KLIG F G SA D GHGTH AS AGNF G +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 230 IFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ 289
FG A GTA G+AP A LAVYK S +IA +D A+ DGVD++S+S+G
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEG-TFTSDLIAAMDQAVADGVDMISISYGYRFIP 179
Query: 290 FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLG 349
Y++ I+ A+F A+ +G+ VS +AGN GP +L N +PW+L V + DR ++ LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 350 NQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASG 409
N G +L+ P++Y + ++ + + + +V+C
Sbjct: 240 NGLKIRGWSLFPARAFVRD-SPVIYNKTLSDCSSEELLS---QVENPENTIVICDDNGDF 295
Query: 410 DD----VLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAA 465
D + A A I ++++ + P V V+ + + Y+ ++ +PTA
Sbjct: 296 SDQMRIITRARLKAAIFISEDPGVFRSAT--FPNPGVVVNKKEGKQVINYVKNSVTPTAT 353
Query: 466 LVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAW-----KTTVDPLA 520
+ + T + AP V A S RGPSR GI KPDI+ PG+ I+AA+ T++
Sbjct: 354 ITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNI 413
Query: 521 NRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILD-C 579
+ + SGTSMA PH +G+AA+LK+AHP WS +AI+SAMMTTAD ++ KPI D
Sbjct: 414 LLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD 473
Query: 580 TRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAK 639
A +GAG V+P++A DPGLVYD P DY+ LC LN+T+EQ ++I
Sbjct: 474 NNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNC 533
Query: 640 VSSIPEAELNYPSFSI------KLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQ 693
S P A+LNYPSF Q + RTVTNVGK + Y ++ AP+ I+V
Sbjct: 534 --SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVS 591
Query: 694 PHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSD--KYTVKSPIAIS 743
P + F KN+K +Y++T G+ S ++WV ++V+SPI S
Sbjct: 592 PQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 449 bits (1156), Expect = e-146
Identities = 117/615 (19%), Positives = 209/615 (33%), Gaps = 82/615 (13%)
Query: 138 GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCE--------LVGATCN 189
+ + G G ++ V+D G H ++ + + E G N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 190 NKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAV 249
+K+ ++ KDG HGTH + +GN A + G P A L +
Sbjct: 68 DKVAYYHDY--SKDGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLL 121
Query: 250 YKVCNPN-VYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYD--NGIAKATFEAIRRG 306
+V N + I AI G V+++SFG + + + KA A +G
Sbjct: 122 MRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKG 181
Query: 307 IFVSIAAGNSGPNHYTL---------------VNDAPWMLTVGASTIDRGITISVRLGNQ 351
+ + +AGN A LTV + + D+ +T +VR+
Sbjct: 182 VSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTA 241
Query: 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS--- 408
+ D E T+ Y A + DVKGK+ L +RG
Sbjct: 242 DQQDKEMPVLSTNRFEPNKAYDYAYA-------NRGTKEDDFKDVKGKIALIERGDIDFK 294
Query: 409 --GDDVLNAGGAAMILMNDELFGDSTLIQRN-SLPNVRVSHAVSESIKAYINSTSSPTAA 465
AG +++ +++ G + +P +S +K T + A
Sbjct: 295 DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNA- 353
Query: 466 LVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYT 525
V+ S ++ FS G + + G +KPDI PG +I+++
Sbjct: 354 ---TPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVANN---------K 399
Query: 526 FDIVSGTSMACPHLSGVAALLKSAHPNWSHAA--------IKSAMMTTADTVNLEGKPIL 577
+ +SGTSM+ P ++G+ LL+ + K +M++A + E
Sbjct: 400 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED---- 455
Query: 578 DCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQC 637
+ GAG V+ KA+ + + D LN ++ + V+ +
Sbjct: 456 --EKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKS 511
Query: 638 AKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNI 697
K EL Y + + + V S+ + A ++TV
Sbjct: 512 DK-----PQELYYQATVQTDKVDGKHF-ALAPKVLYETSWQKITIPANSSKQVTVPIDAS 565
Query: 698 SFAAKNQKVTYSVTF 712
F+ + F
Sbjct: 566 RFSKDLLAQMKNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-35
Identities = 91/484 (18%), Positives = 158/484 (32%), Gaps = 106/484 (21%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
I ++D+G H N N + G N G
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA----------------------NNVTGTNNSGTGNWYQ 58
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPL--AHLAVYKVCNPNVYCPESA 263
+ HGTH A T A AN N VG+ P A++ + KV N + S+
Sbjct: 59 PGNNNAHGTHVAGTIAAI----AN-----NEGVVGVMPNQNANIHIVKVFNEAGWGYSSS 109
Query: 264 VIAGIDAAIED-GVDVLSLSFG-LGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY 321
++A ID + G +V+++S G G + N + G+ + AAGN+G + Y
Sbjct: 110 LVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNT----HYNNGVLLIAAAGNAGDSSY 165
Query: 322 TLVNDAPWMLTVGASTIDR-----------------GITISVRLGNQETYDGEALWQWTD 364
+ +++V A + G I + E +
Sbjct: 166 SYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQS 225
Query: 365 IPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMI-LM 423
S V ++ T + ++ L + +G A I L+
Sbjct: 226 YFS---NGV---VPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV 279
Query: 424 NDELFGDSTLIQRNSLPNVRVSH------AVSESIKAYINSTSSPTAALVMKGTVIGGGS 477
S+ + NS + + + ++ N + + +
Sbjct: 280 ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDIT-VPSVSVDR 338
Query: 478 APQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACP 537
A + + G S + G N+ Y + +GTSMA P
Sbjct: 339 ATGLALKAKLGQS--------TTVSNQG---------------NQDYEY--YNGTSMATP 373
Query: 538 HLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPS 597
H+SGVA L+ S HP S + +++A+ TAD +++ G+ G G +N
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN-----------QTGYGMINAV 422
Query: 598 KAND 601
A
Sbjct: 423 AAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 3e-31
Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 51/301 (16%)
Query: 61 SFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFIS------- 113
F +A + + +++ Y Y +I A ++ +++ +
Sbjct: 41 MFDNQADKEKAVEILDFLGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLS 99
Query: 114 --ARVENTLHLHTTHTPNFL--GLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFND 167
++ + L + ++ W G G+ IG++DTGI HP
Sbjct: 100 GVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG 159
Query: 168 EGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHG 227
K+IG +F + D GHGTH AS AAG G
Sbjct: 160 -----------------------KVIGWVDFV-NGKTTPYDDNGHGTHVASIAAGT---G 192
Query: 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED----GVDVLSLSF 283
A +NG GMAP A L KV N S +I G+D A+++ G+ V++LS
Sbjct: 193 AA----SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSL 248
Query: 284 GLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVN--DAPWMLTVGASTIDRG 341
G S + +++A A G+ V +AAGNSGPN YT+ + A ++TVGA
Sbjct: 249 GSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDV 308
Query: 342 I 342
I
Sbjct: 309 I 309
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-20
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 476 GSAPQVVA------------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
+A +V+ FS RGP+ + LKP+++ PG IIAA +
Sbjct: 292 AAASKVITVGAVDKYDVITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPIN 349
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+ GT+MA PH++G+AALL AHP+W+ +K+A++ TAD ++ I D
Sbjct: 350 DYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD--IVKPDEIAD----- 402
Query: 584 ADLYAVGAGQVNPSKANDPGLVYDIQPDDYIP 615
A GAG+VN KA + Y+
Sbjct: 403 ---IAYGAGRVNAYKAAYYDNYAKLTFTGYVS 431
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 51/210 (24%), Positives = 73/210 (34%), Gaps = 45/210 (21%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G V + V+D+GI HP K+ G +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVY 258
+ D HGTH A T A N V G+AP A L KV +
Sbjct: 52 PSETNPFQDNNSHGTHVAGTVAA----------LNNSIGVLGVAPSASLYAVKVLGADGS 101
Query: 259 CPESAVIAGIDAAIEDGVDVLSLSFG-LGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
S +I GI+ AI + +DV+++S G S + K A+ G+ V AAGN G
Sbjct: 102 GQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDK----AVASGVVVVAAAGNEG 157
Query: 318 PNHYTLVND----APWMLTVGASTIDRGIT 343
+ + P ++ VGA
Sbjct: 158 TSGSSSTVGYPGKYPSVIAVGAVDSSNQRA 187
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 43/136 (31%)
Query: 476 GSAPQVVA------------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
G P V+A FS GP + D++ PG++I +
Sbjct: 169 GKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN-------- 212
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+ +GTSMA PH++G AAL+ S HPNW++ ++S++ T T+L
Sbjct: 213 -KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTT-------------TKLG 258
Query: 584 ADLYAVGAGQVNPSKA 599
Y G G +N A
Sbjct: 259 DSFY-YGKGLINVQAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 57/210 (27%), Positives = 79/210 (37%), Gaps = 46/210 (21%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G V + VLDTGI HP N ++G +F
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFV 51
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVY 258
G + D GHGTH A T A N T V G+AP L KV N +
Sbjct: 52 AG-EAYNTDGNGHGTHVAGTVAA----------LDNTTGVLGVAPSVSLYAVKVLNSSGS 100
Query: 259 CPESAVIAGIDAAIEDGVDVLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
S +++GI+ A +G+DV+++S G S + A RG+ V AAGNSG
Sbjct: 101 GSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDN----AYARGVVVVAAAGNSG 156
Query: 318 PNHYTLVND----APWMLTVGASTIDRGIT 343
+ T ++ VGA +
Sbjct: 157 NSGSTNTIGYPAKYDSVIAVGAVDSNSNRA 186
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 43/136 (31%)
Query: 476 GSAPQVVA------------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
V+A FS G + +++ PG + + + T
Sbjct: 168 AKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTN-------- 211
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
T+ ++GTSMA PH++G AAL+ S HPN S + +++ + +TA T L
Sbjct: 212 -TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA-------------TYLG 257
Query: 584 ADLYAVGAGQVNPSKA 599
+ Y G G +N A
Sbjct: 258 SSFY-YGKGLINVEAA 272
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 45/211 (21%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNF- 198
+ G G+ I VLDTG+ HP + + ++F
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN-----------------------NVEQCKDFT 55
Query: 199 --FCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNP 255
+ S D GHGTH A TA + G ++ + G+AP A L YKV
Sbjct: 56 GATTPINNSCTDRNGHGTHVAGTALAD--------GGSDQAGIYGVAPDADLWAYKVLLD 107
Query: 256 NVYCPESAVIAGIDAAIEDGV-----DVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVS 310
+ + A I A + ++S+S G S ++ I+ A A +G+ +
Sbjct: 108 SGSGYSDDIAAAIRHAADQATATGTKTIISMSLG---SSANNSLISSAVNYAYSKGVLIV 164
Query: 311 IAAGNSGPNHYTLVN--DAPWMLTVGASTID 339
AAGNSG + T+ P + V A
Sbjct: 165 AAAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 484 FSGRGP----SRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539
+S RG +I PG ++ + W T SGTSMA PH+
Sbjct: 206 YSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN------GGYNTI---SGTSMATPHV 256
Query: 540 SGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVN 595
SG+AA + + +P+ S+ ++S + A +V+++G D YA G G
Sbjct: 257 SGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFAR 308
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 55/206 (26%), Positives = 76/206 (36%), Gaps = 43/206 (20%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G GV + VLDTGI+ HP N G +F
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDLNI-------------------------RGGASFV 50
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVY 258
G + S D GHGTH A T A N V G+AP A L KV +
Sbjct: 51 PG-EPSTQDGNGHGTHVAGTIAA----------LNNSIGVLGVAPSAELYAVKVLGASGS 99
Query: 259 CPESAVIAGIDAAIEDGVDVLSLSFG-LGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
S++ G++ A +G+ V +LS G S + + A RG+ V A+GNSG
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNS----ATSRGVLVVAASGNSG 155
Query: 318 PNHYTLVNDAPWMLTVGASTIDRGIT 343
+ + VGA+ +
Sbjct: 156 AGSISYPARYANAMAVGATDQNNNRA 181
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 43/136 (31%)
Query: 476 GSAPQVVA------------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
+A FS G DI+ PG+N+ + + +
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGA--------GLDIVAPGVNVQSTYPGS-------- 206
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
T+ ++GTSMA PH++G AAL+K +P+WS+ I++ + TA ++
Sbjct: 207 -TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------- 255
Query: 584 ADLYAVGAGQVNPSKA 599
G+G VN A
Sbjct: 256 ----LYGSGLVNAEAA 267
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 35/216 (16%)
Query: 140 WKDSNF-GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNF 198
G+G I+ V DTG+ G + K+ +
Sbjct: 14 QSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAF-----------------RGKITALYAL 56
Query: 199 FCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY 258
G+ +A D GHGTH A + GN T GMAP A+L + +
Sbjct: 57 --GRTNNANDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGG 103
Query: 259 CP--ESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNS 316
S + A G + + S+G ++ Y + + + AAGN
Sbjct: 104 LGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNE 163
Query: 317 GPNHYTLVN--DAPWMLTVGASTIDRGITISVRLGN 350
GPN T+ A +TVGA+ R S
Sbjct: 164 GPNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 1e-15
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 25/144 (17%)
Query: 474 GGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAW-----KTTVDPLANRVYTFDI 528
+ V FS RGP++ G +KPD++ PG I++A ++ + Y +
Sbjct: 195 YADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYM- 251
Query: 529 VSGTSMACPHLSGVAALLKSAHPNWSH-----AAIKSAMMTTADTVNLEGKPILDCTRLP 583
GTSMA P ++G A L+ + +K+A++ A + L
Sbjct: 252 -GGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-------- 302
Query: 584 ADLYAVGAGQVNPSKANDPGLVYD 607
G G+V K+ + V +
Sbjct: 303 ---GNQGWGRVTLDKSLNVAYVNE 323
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-26
Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 51/218 (23%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNF- 198
W+ S G G IIGV+DTG HP + ++IG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 199 --FCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPN 256
+ G + + D GHGTH A T A + VG+AP A L + K + +
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGD 121
Query: 257 VYCPESAVIAGIDAAIED------GVDVLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFV 309
+ I A++ + ++++S G S+ + + A+ + V
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKY----AVSNNVSV 177
Query: 310 SIAAGNSGPNHYTLVN-----DAPWMLTVGASTIDRGI 342
AAGN G ++ VGA D +
Sbjct: 178 VCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL 215
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 45/141 (31%)
Query: 476 GSAPQVVA------------FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
+ +V+A F+ DI+ PG+ I + + +
Sbjct: 198 AAYNEVIAVGAVDFDLRLSDFTNTNEE--------IDIVAPGVGIKSTYLDS-------- 241
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPN-----WSHAAIKSAMMTTADTVNLEGKPILD 578
+ +SGT+MA PH++G AL+ + + S I + ++ A + +
Sbjct: 242 -GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQ---- 296
Query: 579 CTRLPADLYAVGAGQVNPSKA 599
G ++ +
Sbjct: 297 -------AEGNGFLTLDLVER 310
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 38/205 (18%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W + G G I ++DTG+ HP + + +F
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVGG-----------------------WDFV 59
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
D + + GHGTH A AA N G G AP A + +V + +
Sbjct: 60 -DNDSTPQNGNGHGTHCAGIAAA---VTNNSTG-----IAGTAPKASILAVRVLDNSGSG 110
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFVSIAAGNSGP 318
+AV GI A + G V+SLS G + + + A +G V AAGN+G
Sbjct: 111 TWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNY----AWNKGSVVVAAAGNAGN 166
Query: 319 NHYTLVNDAPWMLTVGASTIDRGIT 343
+ V ++ + +
Sbjct: 167 TAPNYPAYYSNAIAVASTDQNDNKS 191
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 32/116 (27%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS G D+ PG +I + + T+ T+ +SGTSMA PH++GVA
Sbjct: 193 FSTYGSW--------VDVAAPGSSIYSTYPTS---------TYASLSGTSMATPHVAGVA 235
Query: 544 ALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
LL S S + I++A+ TAD ++ G+VN KA
Sbjct: 236 GLLAS--QGRSASNIRAAIENTAD-------------KISGTGTYWAKGRVNAYKA 276
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 46/205 (22%), Positives = 71/205 (34%), Gaps = 37/205 (18%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W + G I V+DTG+ HP + + + + F
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK----------------GYD--------F 59
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
D +D HGTH A AA N G GMAP + + + N
Sbjct: 60 VDNDYDPMDLNNHGTHVAGIAAA---ETNNATG-----IAGMAPNTRILAVRALDRNGSG 111
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGL-GLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGP 318
S + I A + G +V++LS G + +N + A +G V AAGN+G
Sbjct: 112 TLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNY----AWNKGSVVVAAAGNNGS 167
Query: 319 NHYTLVNDAPWMLTVGASTIDRGIT 343
+ ++ VGA +
Sbjct: 168 STTFEPASYENVIAVGAVDQYDRLA 192
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 32/116 (27%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS G D++ PG++I++ + +SGTSMA PH++G+A
Sbjct: 194 FSNYGTW--------VDVVAPGVDIVSTITGN---------RYAYMSGTSMASPHVAGLA 236
Query: 544 ALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
ALL S N I+ A+ TAD ++ G G++N A
Sbjct: 237 ALLASQGRNN--IEIRQAIEQTADKISGTGT-------------YFKYGRINSYNA 277
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 66/290 (22%)
Query: 70 NSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPN 129
+ R +++L+ + ++ GF +++ + ++ +E + P
Sbjct: 99 QAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHV--DYIEEDSSVFAQSIPW 156
Query: 130 FLGLHRSSG------FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL 183
L R + ++ + G V + +LDT I H +
Sbjct: 157 --NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGR------VMVTDFENV 208
Query: 184 VGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAP 243
A HGTH A + G G+A
Sbjct: 209 PE-----------EDGTRFHRQASKCDSHGTHLAGVVS--------------GRDAGVAK 243
Query: 244 LAHLAVYKVCNPNVYCPESAVIAGIDAAIED------GVDVLSLSFGLGLSQFYDNGIAK 297
A + +V N S + G++ + G V+ L G S+ + +
Sbjct: 244 GASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQR 303
Query: 298 ATFEAIRRGIFVSIAAGNSGPNHYTLVNDA--------PWMLTVGASTID 339
R G+ + AAGN +DA P ++TVGA+
Sbjct: 304 ----LARAGVVLVTAAGNFR-------DDACLYSPASAPEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 9e-12
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG +II A F SGTS A H++G+AA++ SA P + A ++
Sbjct: 360 DLFAPGEDIIGASSDCST-------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELR 412
Query: 560 SAMMTTA 566
++ +
Sbjct: 413 QRLIHFS 419
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 43/235 (18%), Positives = 69/235 (29%), Gaps = 54/235 (22%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
+ D I ++DTG+ H + LV G
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN-------NFSTDSKNLVPLNGFR---GTEPEE 188
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
G D GHGT + + ANG +G+AP +Y+V
Sbjct: 189 TGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTE 236
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFG---------LGLSQFYDNGIAKATFEAI----RRG 306
V I A DG V+++S G + + A +AI ++
Sbjct: 237 L-LWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK 295
Query: 307 IFVSIAAGNSGPNHYTLVNDA------------------PWMLTVGASTIDRGIT 343
V AAGN G + ++TVG++ ++
Sbjct: 296 SIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNLS 350
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 25/126 (19%)
Query: 484 FSGRGPSRIS---PGILKPDIIGPGLNIIAAWKTTVDPLANRVYT------FDIVSGTSM 534
FS G + PG + W + T + +GT++
Sbjct: 352 FSNFGMNYTDIAAPGG---SFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGTAL 408
Query: 535 ACPHLSGVAALLKSA-HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQ 593
A P +SG AL+ H + + N + G G+
Sbjct: 409 ATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR------------YGHGE 456
Query: 594 VNPSKA 599
++ KA
Sbjct: 457 LDVYKA 462
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 40/216 (18%), Positives = 77/216 (35%), Gaps = 43/216 (19%)
Query: 140 WKDSNFGKGVI----IGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
+ ++ ++ G LD + G S E ++ L
Sbjct: 210 FPTADGWLTIVDTTEQGDLDQALRIGEYSRTHET----------------RNVDDFLSIS 253
Query: 196 RNF--FCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVC 253
N + HGTH +S A+GN ++ G+AP A + +
Sbjct: 254 VNVHDEGNVLEVVGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIG 304
Query: 254 NPNVYCPE--SAVIAGIDAAIE-----DGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR- 305
+ + E +A++ + +E +DV+++S+G + I + E + +
Sbjct: 305 DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKY 364
Query: 306 GIFVSIAAGNSGPNHYTLVN----DAPWMLTVGAST 337
G+ +AGN GP T+ P ++ VGA
Sbjct: 365 GVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 1e-20
Identities = 43/246 (17%), Positives = 75/246 (30%), Gaps = 42/246 (17%)
Query: 475 GGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V ++ R P G + PG I + + T +GTSM
Sbjct: 413 EKLPGNVYTWTSRDPC--IDGGQGVTVCAPGGAIASVPQFT-----MSKSQLM--NGTSM 463
Query: 535 ACPHLSGVAALLKSA----HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVG 590
A PH++G ALL S + +S +IK A+ TA + D +A G
Sbjct: 464 AAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG------------YVDPFAQG 511
Query: 591 AGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNY 650
G +N KA + + D+ + + + + + I R+
Sbjct: 512 HGLLNVEKAFEHLTEHRQSKDNMLRF--SVRVGNNADKGIHLRQGVQRNSIDYN------ 563
Query: 651 PSFSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSV 710
+ P Y+ + +F R + + + +V
Sbjct: 564 ------VYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAF---LDLSYGTRSIAV 614
Query: 711 TFTRTG 716
TG
Sbjct: 615 RVDPTG 620
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 5e-22
Identities = 55/294 (18%), Positives = 86/294 (29%), Gaps = 73/294 (24%)
Query: 88 NVISGFAARLTAEEVKAMETKKGFISARVENTLHLHTTHTPNFLGLHRSSGF-------- 139
+I + A V ++ G +VE P++LG +
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGV--EKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIE 88
Query: 140 -------WKDSNF-GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNK 191
W ++ + + VLDTG+ HP L G
Sbjct: 89 RVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANI-------AWCVSTLRGKVSTK- 140
Query: 192 LIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVY 250
D GHGTH T A N V G+AP +
Sbjct: 141 -----------LRDCADQNGHGTHVIGTIA----------ALNNDIGVVGVAPGVQIYSV 179
Query: 251 KVCNPNVYCPESAVIAGIDAAIED--------------------GVDVLSLSFG-LGLSQ 289
+V + S + GI+ AI +V+S+S G
Sbjct: 180 RVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDS 239
Query: 290 FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGIT 343
+ + I + A GI + A+GN G + P ++ VGA + I
Sbjct: 240 YLYDMIIQ----AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIA 289
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 43/129 (33%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS R P ++ PG++I++ + + Y + GT+MA PH+SGV
Sbjct: 291 FSNRQP----------EVSAPGVDILSTYP-------DDSYET--LMGTAMATPHVSGVV 331
Query: 544 ALLKSAH-------------PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVG 590
AL+++A+ + S ++ + TAD + G G
Sbjct: 332 ALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA-----------DYG 380
Query: 591 AGQVNPSKA 599
G V + A
Sbjct: 381 YGVVRAALA 389
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 5e-22
Identities = 46/220 (20%), Positives = 68/220 (30%), Gaps = 55/220 (25%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
+ + VLDTG+ HP L G
Sbjct: 28 VSVIQVAVLDTGVDYDHPDLAA-------NIAWCVSTLRGKVSTK------------LRD 68
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCNPNVYCPESAV 264
D GHGTH T A N V G+AP + +V + S +
Sbjct: 69 CADQNGHGTHVIGTIA----------ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 118
Query: 265 IAGIDAAI--------------------EDGVDVLSLSFG-LGLSQFYDNGIAKATFEAI 303
GI+ AI +D +V+S+S G + + I + A
Sbjct: 119 AIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQ----AY 174
Query: 304 RRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGIT 343
GI + A+GN G + P ++ VGA + I
Sbjct: 175 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIA 214
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 43/129 (33%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS R P ++ PG++I++ + + Y + GT+MA PH+SGV
Sbjct: 216 FSNRQP----------EVSAPGVDILSTYP-------DDSYET--LMGTAMATPHVSGVV 256
Query: 544 ALLKSAH-------------PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVG 590
AL+++A+ + S ++ + TAD + G G
Sbjct: 257 ALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA-----------DYG 305
Query: 591 AGQVNPSKA 599
G V + A
Sbjct: 306 YGVVRAALA 314
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 6e-22
Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 29/222 (13%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVR--- 196
+ + I ++D F + W E + +R
Sbjct: 42 HNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQG 101
Query: 197 ----------NFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAH 246
I H H ST GQ + G+AP
Sbjct: 102 LKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIV----------GQEHSPVFGIAPNCR 151
Query: 247 LAVYKVCNPNV-----YCPESAVIAGIDAAIEDGVDVLSLSFG-LGLSQFYDNGIAKATF 300
+ + ID A+E G +++ +F + + + +A
Sbjct: 152 VINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK 211
Query: 301 EAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGI 342
+ + + GN+ + L P L VGA+ +D
Sbjct: 212 KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP 253
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 26/120 (21%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS G + K I+ PG I+ A ++GTSMA P ++G++
Sbjct: 256 FSNWGGNNT-----KEGILAPGEEILGAQPC------TEEPVR--LTGTSMAAPVMTGIS 302
Query: 544 ALLKSAH----PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
ALL S A+++A++ TA + E + G VN A
Sbjct: 303 ALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRGFVNIPGA 353
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 54/212 (25%), Positives = 76/212 (35%), Gaps = 48/212 (22%)
Query: 134 HRSSGF---WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNN 190
R+ + G GV V+DTG+ H F A G
Sbjct: 15 QRNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR------ASS-------GYD--- 58
Query: 191 KLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVY 250
F D A D GHGTH A T G+ G+A ++
Sbjct: 59 --------FIDNDYDATDCNGHGTHVAGTIG--------------GSTYGVAKNVNVVGV 96
Query: 251 KVCNPNVYCPESAVIAGIDAAIEDGV--DVLSLSFGLGLSQFYDNGIAKATFEAIRRGIF 308
+V N + S VIAGI+ + V ++S G G SQ D+ + A+ GI
Sbjct: 97 RVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVNA----AVAAGIT 152
Query: 309 VSIAAGNSGPNHYTLV-NDAPWMLTVGASTID 339
+AAGN N A +TVG++T +
Sbjct: 153 FVVAAGNDNSNACNYSPARAADAITVGSTTSN 184
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI PG +I ++W T+ + T SGTSMA PH++GVAAL +PN S A +
Sbjct: 198 DIYAPGSSITSSWYTS----NSATNTI---SGTSMASPHVAGVAALYLDENPNLSPAQVT 250
Query: 560 SAMMTTA 566
+ + T A
Sbjct: 251 NLLKTRA 257
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 66/225 (29%)
Query: 132 GLHR-------SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV 184
GL R + + G GV V+DTG+ H F +
Sbjct: 7 GLDRIDQRNLPLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR------SVS------- 53
Query: 185 GATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPL 244
G F D + D GHGTH A T G+ G+A
Sbjct: 54 GYD-----------FVDNDADSSDCNGHGTHVAGTIG--------------GSQYGVAKN 88
Query: 245 AHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV--DVLSLSFGLGLSQFYDNGIAKATFEA 302
++ +V + + S VI+G+D ++ V ++S G G S D+ + A
Sbjct: 89 VNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQG----A 144
Query: 303 IRRGIFVSIAAGNSGPNHYTLVNDA--------PWMLTVGASTID 339
I+ G+ +AAGNS DA P +TVG++T
Sbjct: 145 IQSGVSFMLAAGNSN-------ADACNTSPARVPSGVTVGSTTSS 182
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG I +AW + +SGTSMA PH++GVAAL + + +
Sbjct: 196 DLFAPGSQIKSAWYDG---------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLT 246
Query: 560 SAMMTTA 566
+ + A
Sbjct: 247 GLLNSRA 253
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 53/214 (24%), Positives = 77/214 (35%), Gaps = 61/214 (28%)
Query: 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
S + + G+GV + V+DTGI H F A+
Sbjct: 20 LSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR------ARV-----------------G 56
Query: 196 RNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
+ G+ D GHGTH A T G G+A +L +V +
Sbjct: 57 YDAL---GGNGQDCNGHGTHVAGTIG--------------GVTYGVAKAVNLYAVRVLDC 99
Query: 256 NVYCPESAVIAGIDAAIEDGVD--VLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAA 313
N S VIAG+D + V ++S G G+S DN + +I G+ ++AA
Sbjct: 100 NGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVKN----SIAAGVVYAVAA 155
Query: 314 GNSGPNHYTLVNDA--------PWMLTVGASTID 339
GN +A LTVGA+T
Sbjct: 156 GNDN-------ANACNYSPARVAEALTVGATTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 8e-12
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG +I +AW T+ ++GTSMA PH++GVAAL +P+ + A++
Sbjct: 196 DLFAPGASIPSAWYTSD-------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVA 248
Query: 560 SAMMTTA 566
SA++ A
Sbjct: 249 SAILNGA 255
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 1e-20
Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 46/216 (21%)
Query: 134 HRSSGF--WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNK 191
++ + G V + +LDT I H EG R +
Sbjct: 11 PPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--EG--------R-------VMVTDF 53
Query: 192 LIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYK 251
A HGTH A + G G+A A + +
Sbjct: 54 ENVPEEDGTRFHRQASKCDSHGTHLAGVVS--------------GRDAGVAKGASMRSLR 99
Query: 252 VCNPNVYCPESAVIAGIDAAIED------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305
V N S + G++ + G V+ L G S+ + + R
Sbjct: 100 VLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQR----LARA 155
Query: 306 GIFVSIAAGNSGPN--HYTLVNDAPWMLTVGASTID 339
G+ + AAGN + Y+ + AP ++TVGA+
Sbjct: 156 GVVLVTAAGNFRDDACLYSPAS-APEVITVGATNAQ 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG +II A F SGTS A H++G+AA++ SA P + A ++
Sbjct: 208 DLFAPGEDIIGASSDCST-------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELR 260
Query: 560 SAMMTTA 566
++ +
Sbjct: 261 QRLIHFS 267
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 55/224 (24%), Positives = 81/224 (36%), Gaps = 70/224 (31%)
Query: 134 HRSSGFWK---DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNN 190
HR+ G D++ G G + V+DTG+ HP F AK
Sbjct: 16 HRARGSTAYAYDTSAGAGACVYVIDTGVEDTHPDFEGR------AKQ------------- 56
Query: 191 KLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVY 250
++++ +A D GHGTH A T G+A +
Sbjct: 57 ----IKSY----ASTARDGHGHGTHCAGTIG--------------SKTWGVAKKVSIFGV 94
Query: 251 KVCNPNVYCPESAVIAGIDAAIEDGVD-------VLSLSFGLGLSQFYDNGIAKATFEAI 303
KV + + S +IAG+D D V S+S G G S + A+
Sbjct: 95 KVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAAR----LQ 150
Query: 304 RRGIFVSIAAGNSGPNHYTLVNDA--------PWMLTVGASTID 339
G+FV++AAGN DA P + TVGA+ +
Sbjct: 151 SSGVFVAVAAGNDN-------RDAANTSPASEPTVCTVGATDSN 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI PG +I + W + +SGTSMA PH++G+AA L S A+
Sbjct: 201 DIFAPGTSITSTWIGG---------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMC 250
Query: 560 SAMMTTA 566
+ T +
Sbjct: 251 GRIQTLS 257
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 90.9 bits (225), Expect = 5e-19
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 52/214 (24%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
+ G +I+ V+DTG+ HP +L G ++I
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHP------------------DLEG-----QVIAGYRPA 183
Query: 200 CGKDGS----AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV-GMAPLAHLAVYKVCN 254
++ + GTH A T A + +G + G+AP A + + +
Sbjct: 184 FDEELPAGTDSSYGGSAGTHVAGTIA----------AKKDGKGIVGVAPGAKIMPIVIFD 233
Query: 255 PNV------YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIF 308
Y + V AGI A + G V++ S+G Y + +A A+ G+
Sbjct: 234 DPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWG---GWGYSYTMKEAFDYAMEHGVV 290
Query: 309 VSIAAGNSGPNHYTLVN---DAPWMLTVGASTID 339
+ ++AGN+ + + P ++ V A
Sbjct: 291 MVVSAGNNTSD--SHHQYPAGYPGVIQVAALDYY 322
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 1e-15
Identities = 45/275 (16%), Positives = 70/275 (25%), Gaps = 37/275 (13%)
Query: 476 GSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIV------ 529
G +V FS R + PG+ I++
Sbjct: 323 GGTFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374
Query: 530 ---SGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADL 586
GTSMA PH++GV A+L PN I+ + TA N G
Sbjct: 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD----------- 423
Query: 587 YAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEA 646
+ G G V A L +++ + V
Sbjct: 424 HDTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTG 483
Query: 647 ELNYPSFS---------IKLGYSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNI 697
F G + Y + E + + +
Sbjct: 484 PDGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGV 543
Query: 698 SFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSD 732
S A V ++ T +TN S+ + V D
Sbjct: 544 SPDATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVD 578
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 58/224 (25%), Positives = 79/224 (35%), Gaps = 70/224 (31%)
Query: 134 HRSSGFWK---DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNN 190
S G D + G+G + V+DTGI HP F A+
Sbjct: 15 STSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR------AQM------------- 55
Query: 191 KLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVY 250
V+ + S+ D GHGTH A T G+A L
Sbjct: 56 ----VKTY----YYSSRDGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGV 93
Query: 251 KVCNPNVYCPESAVIAGIDAAIEDGVD-------VLSLSFGLGLSQFYDNGIAKATFEAI 303
KV + N S +IAG+D D + V SLS G G S ++ A+
Sbjct: 94 KVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAAR----LQ 149
Query: 304 RRGIFVSIAAGNSGPNHYTLVNDA--------PWMLTVGASTID 339
G+ V++AAGN+ DA P + TVGAS
Sbjct: 150 SSGVMVAVAAGNNN-------ADARNYSPASEPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI GPG +I++ W + +SGTSMA PH++G+AA L + + A+
Sbjct: 200 DIFGPGTDILSTWIGG---------STRSISGTSMATPHVAGLAAYLMTLGKT-TAASAC 249
Query: 560 SAMMTTA 566
+ TA
Sbjct: 250 RYIADTA 256
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 31/236 (13%), Positives = 54/236 (22%), Gaps = 53/236 (22%)
Query: 140 WKDSNF-GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNF 198
V++ V+D+G+ +D +
Sbjct: 36 TMSLTDKNTPVVVSVVDSGVAF-IGGLSDSEFA-----------------KFSFTQDGSP 77
Query: 199 FCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV- 257
F + HGT AS A + G+ P A ++ +V V
Sbjct: 78 F--PVKKSEALYIHGTAMASLIA------------SRYGIYGVYPHALISSRRVIPDGVQ 123
Query: 258 --YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGN 315
+ I ++++S G + + A GN
Sbjct: 124 DSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGN 183
Query: 316 SGPNHYTLVNDAP-----------------WMLTVGASTIDRGITISVRLGNQETY 354
G + L ++ V A R V G T
Sbjct: 184 DGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 28/136 (20%), Positives = 41/136 (30%), Gaps = 28/136 (20%)
Query: 464 AALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523
AAL + S G + + DI PG NI +
Sbjct: 219 AALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRP-------DAK 264
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
SGTS A +SGV A + S +P + +K ++ +AD
Sbjct: 265 TGT--GSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVD--------- 313
Query: 584 ADLYAVGAGQVNPSKA 599
+N KA
Sbjct: 314 ---KVTEGRVLNAEKA 326
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 46/221 (20%), Positives = 69/221 (31%), Gaps = 35/221 (15%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFND-----EGMPPPPAKWR---GKCELVGATCNNK 191
W G+ V++ V+DTGI H N G+ +
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWF 83
Query: 192 LIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYK 251
D + HG+H A T A N G A G+A A + +
Sbjct: 84 DNWACGGRPDPRKERSDSSWHGSHVAGTIAAV---TNNRIGVA-----GVAYGAKVVPVR 135
Query: 252 VCNPNVYCPESAVIAGIDAAI----------EDGVDVLSLSFGLG--LSQFYDNGIAKAT 299
+S + G+ A + V+++S G S I +
Sbjct: 136 ALGRC-GGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDR-- 192
Query: 300 FEAIRRGIFVSIAAGNSGPNHYTLV-NDAPWMLTVGASTID 339
A R G V +AAGN N +L+VGA+T
Sbjct: 193 --ATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR 231
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543
FS G D+ PG +I++ + + Y+F +GTSMA PH+SGVA
Sbjct: 237 FSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDAYSFM--AGTSMATPHVSGVA 286
Query: 544 ALLKSA----HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
AL+ SA + N + A +K +++T N A+G+G V+ A
Sbjct: 287 ALVISAANSVNKNLTPAELKDVLVSTTSPFN------------GRLDRALGSGIVDAEAA 334
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 4e-11
Identities = 41/264 (15%), Positives = 81/264 (30%), Gaps = 49/264 (18%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W ++ G GV+ ++D G+ + D N G +F
Sbjct: 47 WYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWDFN 85
Query: 200 CGKD--GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV 257
+ + HGT A A N VG+ A ++ ++ + ++
Sbjct: 86 DNTNLPKPRLSDDYHGTRCAGEIAAK--------KGNNFCGVGVGYNAKISGIRILSGDI 137
Query: 258 YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIR---------RGIF 308
A + + D D+ S S+G + G + +A+ +G
Sbjct: 138 T--TEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAI 194
Query: 309 VSIAAGNSGPNH----YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTD 364
A+GN G Y ++ + +T+GA + +
Sbjct: 195 YVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEY 254
Query: 365 IPSKRLPLVYPDARNHSTTTFCSP 388
I S + + +H T+ +P
Sbjct: 255 IHSSDINGRCSN--SHGGTSAAAP 276
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+ ++ D + GTS A P +GV LL A+PN + ++
Sbjct: 243 MAVTYSSGSGEYIHSS-DINGRCSNSH---GGTSAAAPLAAGVYTLLLEANPNLTWRDVQ 298
Query: 560 SAMMTTADTVNLEGKPILDCTRLPADL-YAVGAGQVNPSKANDPGLVYDIQPDDYIPYLC 618
+ +A + + + + G G+++ K + ++ YL
Sbjct: 299 YLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLP 358
Query: 619 GLN------YTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIK 656
L T+E ++S++ + + ++ E + I
Sbjct: 359 TLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDID 402
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 52/217 (23%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W G G+++ +LD GI HP N G
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNHPDLAG----------------------NYDPGASFDV 68
Query: 200 CGKD------GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVC 253
+D + ++ HGT A A N VG+A A + ++
Sbjct: 69 NDQDPDPQPRYTQMNDNRHGTRCAGEVAAV---ANNGVC-----GVGVAYNARIGGVRML 120
Query: 254 NPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIR--------- 304
+ V AV A + + + S S+G +G A+ EA
Sbjct: 121 DGEVT---DAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGG 177
Query: 305 RGIFVSIAAGNSGPNH----YTLVNDAPWMLTVGAST 337
G A+GN G H ++ + L++ ++T
Sbjct: 178 LGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 530 SGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAV 589
+GTS + P +G+ AL A+ N + ++ ++ T+ +L ++
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 317
Query: 590 GAGQVNPSKA 599
G G ++
Sbjct: 318 GYGLLDAGAM 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 63/456 (13%), Positives = 134/456 (29%), Gaps = 156/456 (34%)
Query: 329 WML-TVGASTIDRGITISVRLGNQETYDGEALWQWTDI------PSKRLPLVYPDARN-- 379
W L + + + V + Y + + I PS + Y + R+
Sbjct: 69 WTLLSKQEEMVQK----FVEEVLRINYK----FLMSPIKTEQRQPSMMTRM-YIEQRDRL 119
Query: 380 HSTTTFCSP-------------ETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL---- 422
++ + + L + V++ SG + A +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLSYK 175
Query: 423 ----MNDELF----G-----DSTLIQRNSL---------------PNVRVS-HAVSESIK 453
M+ ++F ++ L L N+++ H++ ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 454 AYINSTSSPTAALVMKGTVIGGGSAPQVV-AFSGRGPSRISPGIL----KPDIIGPGLNI 508
+ S LV+ V + AF+ +I L + +
Sbjct: 236 RLLKSKPYENCLLVLLN-V----QNAKAWNAFNLS--CKI----LLTTRFKQVT----DF 280
Query: 509 IAAWKTTVDPLANRVYTF------DIVS---GTSM------AC---P-HLSGVAALLKSA 549
++A TT L + T ++ P LS +A ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD- 339
Query: 550 HP----NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLV 605
NW H ++N +L+ PA+ +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLN-----VLE----PAEYRK----------------M 374
Query: 606 YD---IQPDD-YIPY--LCGL--NYTDEQVQSIVDREVQCAKVSSI----PEAELNYPSF 653
+D + P +IP L + + V +V+ + K S + E+ ++ PS
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSI 431
Query: 654 SIKLGYSP---QTYHRT-VTNVGKAKSFYTRQMVAP 685
++L HR+ V + K+F + ++ P
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 57/422 (13%), Positives = 115/422 (27%), Gaps = 124/422 (29%)
Query: 37 KDGLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSS-DH-----DRNQSSRMLYFY---- 86
KD L + + + D +P++ +S DH D + L++
Sbjct: 19 KDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 87 -KNVISGF------------AARLTAEEV-KAMETKKGFISARVENTLH--------LHT 124
+ ++ F + + E+ +M T+ +I R + L+ +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQR--DRLYNDNQVFAKYNV 131
Query: 125 THTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV 184
+ +L L + + K V+I G+ GK +
Sbjct: 132 SRLQPYLKLRQ--ALLELRP-AKNVLI----------D------GV-----LGSGKTWVA 167
Query: 185 GATCNNKLIGVRNFF---------CGKDGSAIDYTGHGTHTASTAAGNFV----HGANIF 231
C + + + F C + ++ N+ H +NI
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 232 GQANGTAVGMAPLAHLAVYK--------VCNPNVY------CP------ESAVIAGIDAA 271
+ + + L Y+ V N + C V + AA
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 272 ------IEDGVDVLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFV--SIAAG-NSGPNHY 321
++ L+ L ++ D E + IA G +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 322 TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQW-------TDIPSKRLPLVY 374
W V + I S+ E + ++ IP+ L L++
Sbjct: 345 D-----NW-KHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 375 PD 376
D
Sbjct: 397 FD 398
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.03 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.89 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.8 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.6 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.55 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.14 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.57 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.43 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 94.13 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.07 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 93.52 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 90.46 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 89.74 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.78 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 88.32 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 86.67 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 82.0 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 81.74 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-117 Score=1025.35 Aligned_cols=608 Identities=41% Similarity=0.655 Sum_probs=552.2
Q ss_pred ccCCCCccccCCCCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc----ccCccccceeecc
Q 045720 124 TTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA----TCNNKLIGVRNFF 199 (745)
Q Consensus 124 ~~~s~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~----~~~~kv~g~~~~~ 199 (745)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.++++++++.+|++.|+.+.+ .||+|+++.++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 468899999987788999999999999999999999999999999999999999999998766 6999999999997
Q ss_pred CCC----------CCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHH
Q 045720 200 CGK----------DGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGID 269 (745)
Q Consensus 200 ~~~----------~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~ 269 (745)
+++ ..+++|.+||||||||||||+..++.+.+|++.|.+.||||+|+|++||+++ ..++..+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~~i~~Ai~ 159 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-NEGTFTSDLIAAMD 159 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEE-TTEECHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccC-CCCCCHHHHHHHHH
Confidence 432 1167899999999999999999888888888888899999999999999999 66799999999999
Q ss_pred HHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcC
Q 045720 270 AAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLG 349 (745)
Q Consensus 270 ~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~ 349 (745)
||+++|+||||||||....++..+++..++++|.++|++||+||||+|+...++++.+||+|+|||++.++.|...+.++
T Consensus 160 ~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 160 QAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 99999999999999998777888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcc--cceEEEEecCCc-----hhhhhhcCceEEEE
Q 045720 350 NQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDV--KGKVVLCQRGAS-----GDDVLNAGGAAMIL 422 (745)
Q Consensus 350 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~~~~-----~~~~~~~ga~~~i~ 422 (745)
+++.+.|.+++..... ...+|++|.. ....|.+..++..++ +|||++|+|+.+ ..+++.+|+.|+|+
T Consensus 240 ng~~~~g~sl~~~~~~-~~~~plv~~~-----~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~ 313 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAF-VRDSPVIYNK-----TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFI 313 (649)
T ss_dssp TSCEEEEECCCSSCBC-EEEEEEECCT-----TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEeeeecccCccc-CcceeeEecc-----cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEE
Confidence 9999999999887653 6779999977 346799888888877 999999999998 77889999999999
Q ss_pred eecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceee
Q 045720 423 MNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502 (745)
Q Consensus 423 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~ 502 (745)
+|+. .....+.+.+|.+.|+..+|..|++|++++.+++++|.+..+..+....+.++.||||||+...++++||||+
T Consensus 314 ~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~ 390 (649)
T 3i6s_A 314 SEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDIL 390 (649)
T ss_dssp CCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEE
T ss_pred ecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEE
Confidence 9986 3455678899999999999999999999999999999999999998899999999999999988899999999
Q ss_pred eCCccEEeeccCCCCC----CCC-cccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCccc
Q 045720 503 GPGLNIIAAWKTTVDP----LAN-RVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPIL 577 (745)
Q Consensus 503 APG~~I~sa~~~~~~~----~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~ 577 (745)
|||++|+++++..... .+. ....|..+||||||||||||++|||||+||+|+|++||++||+||++++..+.++.
T Consensus 391 APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~ 470 (649)
T 3i6s_A 391 APGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470 (649)
T ss_dssp EECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCE
T ss_pred eCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccc
Confidence 9999999999885432 111 23589999999999999999999999999999999999999999999999999988
Q ss_pred CCC-CCCCCccccCCCccCcCCCCCCCceecCCCCCcccccccCCCCccceeEecccccc--cccCCCCCCccCCCceee
Q 045720 578 DCT-RLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQ--CAKVSSIPEAELNYPSFS 654 (745)
Q Consensus 578 ~~~-~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ln~ps~~ 654 (745)
+.. +.++.++.||+|+||+.+|++||||||++.+||++|||++||+.++|+.|++++.. |+. ...+||||||+
T Consensus 471 ~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~ 546 (649)
T 3i6s_A 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPSFI 546 (649)
T ss_dssp ETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSSEE
T ss_pred ccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCcEE
Confidence 764 77889999999999999999999999999999999999999999999999998877 975 56799999999
Q ss_pred eec-CCcC-----EEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEE
Q 045720 655 IKL-GYSP-----QTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLS 728 (745)
Q Consensus 655 ~~~-~~~~-----~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~ 728 (745)
+.+ ..+. ++|+|||||||+...+|+++++.|.|++|+|+|.+|+|.+.+|+++|+|||+........+.||+|+
T Consensus 547 ~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~ 626 (649)
T 3i6s_A 547 ALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSIT 626 (649)
T ss_dssp EEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEE
T ss_pred eecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEE
Confidence 987 4555 8999999999999999999999999999999999999998899999999999876555578999999
Q ss_pred EEc--CceeEEeeEEEEeC
Q 045720 729 WVS--DKYTVKSPIAISFE 745 (745)
Q Consensus 729 ~~~--~~~~v~~P~~v~~~ 745 (745)
|+| ++|.||+||+|++.
T Consensus 627 w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 627 WVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEETTSCCEEEEEEEEEEC
T ss_pred EEcCCCCeEEEEeEEEEEc
Confidence 998 99999999999863
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-108 Score=953.66 Aligned_cols=600 Identities=39% Similarity=0.669 Sum_probs=504.3
Q ss_pred ccCCCCccccCCCCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc-ccCccccceeeccCCC
Q 045720 124 TTHTPNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA-TCNNKLIGVRNFFCGK 202 (745)
Q Consensus 124 ~~~s~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~-~~~~kv~g~~~~~~~~ 202 (745)
++++|+|+|+.+ .+|.+..+|+||+|||||||||++||+|.++++++++.+|++.|+.+.+ .||+|++++++|..+.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~ 78 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGR 78 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSS
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCC
Confidence 468899999964 6899999999999999999999999999999999999999999999877 8999999999997654
Q ss_pred CC------CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCC
Q 045720 203 DG------SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV 276 (745)
Q Consensus 203 ~~------~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~ 276 (745)
.. +++|++||||||||||||+...+.+..|.+.|.+.||||+|+|++||+|+ +.++..+++++||++|+++|+
T Consensus 79 ~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~di~~a~~~a~~~g~ 157 (621)
T 3vta_A 79 PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAIADGV 157 (621)
T ss_dssp SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEE-TTEECHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeec-CCCCCHHHHHHHHHHHHHhCC
Confidence 21 57899999999999999998887777788888889999999999999999 778899999999999999999
Q ss_pred cEEEeccCCCC-CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceee
Q 045720 277 DVLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYD 355 (745)
Q Consensus 277 dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 355 (745)
||||||||+.. ..+..+++..++++|.++|+++|+||||+|+...++++.+||+++|++++.++.+...+.++++..+.
T Consensus 158 dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~ 237 (621)
T 3vta_A 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237 (621)
T ss_dssp SEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEE
T ss_pred CEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceee
Confidence 99999999875 44567889999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCceeEEecCCCCCC-----CcCCCCCCCCCCCcccceEEEEecCCc--hhhhhhcCceEEEEeecCCC
Q 045720 356 GEALWQWTDIPSKRLPLVYPDARNHS-----TTTFCSPETLKSVDVKGKVVLCQRGAS--GDDVLNAGGAAMILMNDELF 428 (745)
Q Consensus 356 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~c~~~~~~~~~~~gkivl~~~~~~--~~~~~~~ga~~~i~~~~~~~ 428 (745)
+.++... ....+++++....... ....|.+..+++.+++|||++|.++.. ..+....|+.++|++++...
T Consensus 238 ~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~ 314 (621)
T 3vta_A 238 GVSINTF---DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRD 314 (621)
T ss_dssp EBCCCCS---CCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCS
T ss_pred eeecccC---CCcccccccccccccccccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCC
Confidence 8887654 2455666665544322 356788889999999999999998776 55667789999999887543
Q ss_pred CccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccE
Q 045720 429 GDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNI 508 (745)
Q Consensus 429 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I 508 (745)
..+.+.+|...++..++..+..|+.....+...+... +...+...+.++.||||||+...++++||||+|||++|
T Consensus 315 ----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~-~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~I 389 (621)
T 3vta_A 315 ----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKS-TTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEI 389 (621)
T ss_dssp ----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCC-EEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSE
T ss_pred ----cccccccceEEECHHHHHHHHHHHhccCCcceEEecc-eEeccCCCCceeeecCCCCCCCCCCeeccccccCCcce
Confidence 2457789999999999999999999998888877444 34445778899999999999888899999999999999
Q ss_pred EeeccCCCCC-CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCcc
Q 045720 509 IAAWKTTVDP-LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLY 587 (745)
Q Consensus 509 ~sa~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 587 (745)
+|+++..... .......|..+||||||||||||++|||||+||+|+|++||++||+||++++..+ .+..++
T Consensus 390 lsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--------~~~~~~ 461 (621)
T 3vta_A 390 LAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--------NPQAEF 461 (621)
T ss_dssp EEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--------CTTTHH
T ss_pred EeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--------CCCCch
Confidence 9999865432 2334467999999999999999999999999999999999999999999886553 456789
Q ss_pred ccCCCccCcCCCCCCCceecCCCCCcccccccCCCCccceeEecccccccccCCCCCCccCCCceeeeecC---CcCEEE
Q 045720 588 AVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLG---YSPQTY 664 (745)
Q Consensus 588 ~~G~G~id~~~Al~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~---~~~~~~ 664 (745)
+||+|+||+.+|++||||||++.+||+.|||.++|+.++++.++++...|.........+||||||++.+. ..+++|
T Consensus 462 ~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~ 541 (621)
T 3vta_A 462 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYF 541 (621)
T ss_dssp HHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCCEEEEE
T ss_pred hcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999887667788999999998744 347899
Q ss_pred EEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEcCceeEEeeEEEEe
Q 045720 665 HRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKSPIAISF 744 (745)
Q Consensus 665 ~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~P~~v~~ 744 (745)
+|||||+|....+|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+.. ..+.++||+|+|+|++|.||+||+|+.
T Consensus 542 ~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 542 NRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred EEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 999999999999999999999999999999999999989999999999865 344799999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-79 Score=740.18 Aligned_cols=526 Identities=21% Similarity=0.274 Sum_probs=414.7
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccc-------------C-cccCccccceeeccCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV-------------G-ATCNNKLIGVRNFFCG 201 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~-------------~-~~~~~kv~g~~~~~~~ 201 (745)
++.+|.++++|+||+|||||||||++||+|.+. ..|++.|... . .+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 456999999999999999999999999999853 3455555321 1 1699999999999876
Q ss_pred CCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEE
Q 045720 202 KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVL 279 (745)
Q Consensus 202 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVI 279 (745)
.+ ..|+.||||||||||||+...+.+. .+.+.||||+|+|+++|+++ ..+ +..+++++||+||+++|+|||
T Consensus 80 ~~--~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~-~~g~~~~~~~i~~Ai~~Ai~~gvdVI 152 (926)
T 1xf1_A 80 GK--TAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEI-VNGLADYARNYAQAIRDAINLGAKVI 152 (926)
T ss_dssp SC--CCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCC-CSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CC--CCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeec-CCCCCCcHHHHHHHHHHHHHhCCcEE
Confidence 53 3389999999999999987544322 23468999999999999998 554 456789999999999999999
Q ss_pred EeccCCCC--CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCC---------------CcccCCCCceEEecccccccce
Q 045720 280 SLSFGLGL--SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH---------------YTLVNDAPWMLTVGASTIDRGI 342 (745)
Q Consensus 280 N~SlG~~~--~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~---------------~~~~~~~p~vitVga~~~~~~~ 342 (745)
|||||+.. .....+.+..++++|.++|++||+||||+|... ...++.+||+|+|||++.++.+
T Consensus 153 n~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~ 232 (926)
T 1xf1_A 153 NMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 232 (926)
T ss_dssp EECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEE
T ss_pred EECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccccc
Confidence 99999864 234567788899999999999999999999632 1233558999999999999988
Q ss_pred EEEEEc-CCCceeeeeecccCCCC-CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhc
Q 045720 343 TISVRL-GNQETYDGEALWQWTDI-PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNA 415 (745)
Q Consensus 343 ~~~~~~-~~g~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ 415 (745)
...+.+ +++....+.+++...++ ....+|+++.+. .|.+..+ .+++|||++|+|+.| ..+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------g~~~~~~--~~v~Gkivl~~rg~~~~~~k~~~~~~~ 303 (926)
T 1xf1_A 233 TETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------GTKEDDF--KDVKGKIALIERGDIDFKDKIAKAKKA 303 (926)
T ss_dssp EEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------SCSTTTT--TTCTTSEEEEECCSSCHHHHHHHHHHT
T ss_pred ccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------CCCccch--hhcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 888877 55555555555443333 456799999764 3765555 689999999999988 7788999
Q ss_pred CceEEEEeecCCCCcc-ccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceE--ecCCCCCeeecccCCCCCCC
Q 045720 416 GGAAMILMNDELFGDS-TLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTV--IGGGSAPQVVAFSGRGPSRI 492 (745)
Q Consensus 416 ga~~~i~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSs~Gp~~~ 492 (745)
|+.++|++++...... ......++|+..|+..+|..|+. .+..++++..+. ++....+.++.||||||+.
T Consensus 304 Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~- 376 (926)
T 1xf1_A 304 GAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA- 376 (926)
T ss_dssp TCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT-
T ss_pred CCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC-
Confidence 9999999988654332 22346789999999999988873 345666666543 5556678999999999996
Q ss_pred CCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHH----hhCCCCCHHH----HHHHhhc
Q 045720 493 SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLK----SAHPNWSHAA----IKSAMMT 564 (745)
Q Consensus 493 ~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~ls~~~----vk~~L~~ 564 (745)
++++||||+|||++|+++++.+ .|..+||||||||||||++|||+ +.||+|+|+| ||++||+
T Consensus 377 -~~~lKPDI~APG~~I~sa~~~~---------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~ 446 (926)
T 1xf1_A 377 -DGNIKPDIAAPGQDILSSVANN---------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMS 446 (926)
T ss_dssp -TSCBSCCEEEECCCEEESSSCS---------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHH
T ss_pred -CCccCceEECCCCCEEeeccCC---------cceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999873 89999999999999999999996 5699999997 9999999
Q ss_pred ccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCceecCCCCCcccccccCCCCccceeEecccccccccCCCCC
Q 045720 565 TADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIP 644 (745)
Q Consensus 565 TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (745)
||+++...+ ....+++++||+|+||+.+|+++.+ |+|..+++..
T Consensus 447 TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~------------------- 490 (926)
T 1xf1_A 447 SATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS------------------- 490 (926)
T ss_dssp HSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS-------------------
T ss_pred cCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc-------------------
Confidence 999875432 1234678899999999999999854 5787654322
Q ss_pred CccCCCceeeeecCCcCEEEEEEEEecCCCc--eeEEEEEeC--CCCeEEEEEcCeE--------EeccCCcEEEEEEEE
Q 045720 645 EAELNYPSFSIKLGYSPQTYHRTVTNVGKAK--SFYTRQMVA--PEGVEITVQPHNI--------SFAAKNQKVTYSVTF 712 (745)
Q Consensus 645 ~~~ln~ps~~~~~~~~~~~~~~tv~N~g~~~--~ty~~~~~~--p~~~~v~v~p~~~--------~~~~~~~~~~~~vt~ 712 (745)
++.+.......+++|||||+|+.+ .+|++.+.. |.+..++|+|..+ ++++ ||+++|+|||
T Consensus 491 -------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~a-g~~~~~~vt~ 562 (926)
T 1xf1_A 491 -------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPA-NSSKQVTVPI 562 (926)
T ss_dssp -------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECT-TEEEEEEEEE
T ss_pred -------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECC-CCEEEEEEEE
Confidence 222332234678999999999854 567777765 6788888877654 4444 9999999999
Q ss_pred EecC--------CCCCCeEEEEEEEE--cCce-eEEeeEEEEe
Q 045720 713 TRTG--------NTNASSAQAYLSWV--SDKY-TVKSPIAISF 744 (745)
Q Consensus 713 ~~~~--------~~~~~~~~G~~~~~--~~~~-~v~~P~~v~~ 744 (745)
++.. .+.+.++||+|+|+ ++.| .||+||++..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 563 DASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp ECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 9862 23446999999999 5655 4999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-62 Score=553.64 Aligned_cols=366 Identities=33% Similarity=0.476 Sum_probs=292.9
Q ss_pred CCCceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHh-----------h
Q 045720 38 DGLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAM-----------E 106 (745)
Q Consensus 38 ~~~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L-----------~ 106 (745)
....+|||+|+++. ......+++++. +.++.++|+ .|+||+++++++++++| +
T Consensus 33 ~~~~~~iV~~~~~~---~~~~~~~~~~~~------------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~ 96 (539)
T 3afg_A 33 DQEVSTIIMFDNQA---DKEKAVEILDFL------------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNA 96 (539)
T ss_dssp TCEEEEEEEESSHH---HHHHHHHHHHHH------------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CC
T ss_pred cCceEEEEEECCCC---CHHHHHHHHHhc------------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccc
Confidence 34567999999653 122333444444 568999997 69999999999999999 8
Q ss_pred cCCCeEEEEEcceecccccCC--CCccccCCCCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045720 107 TKKGFISARVENTLHLHTTHT--PNFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV 184 (745)
Q Consensus 107 ~~p~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~ 184 (745)
++|+|++||++..+++..... ...+....+..+|..+++|+||+|||||||||++||+|.++
T Consensus 97 ~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~---------------- 160 (539)
T 3afg_A 97 QLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK---------------- 160 (539)
T ss_dssp CCTTEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT----------------
T ss_pred cCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC----------------
Confidence 899999999999887753221 11122223567999999999999999999999999999753
Q ss_pred CcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHH
Q 045720 185 GATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESA 263 (745)
Q Consensus 185 ~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~ 263 (745)
+++.++|.++.. .+.|+.||||||||||+|+... ..|.+.||||+|+|+.+|+++ +.+ ++.++
T Consensus 161 -------i~~~~d~~~~~~-~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~-~~g~~~~~~ 224 (539)
T 3afg_A 161 -------VIGWVDFVNGKT-TPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLN-GQGSGSISD 224 (539)
T ss_dssp -------EEEEEETTTCCS-SCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSC-TTSEEEHHH
T ss_pred -------EeeeEECCCCCC-CCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeec-CCCCcCHHH
Confidence 566677776543 6778999999999999987422 123358999999999999998 544 78899
Q ss_pred HHHHHHHHHhC----CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccc
Q 045720 264 VIAGIDAAIED----GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGAST 337 (745)
Q Consensus 264 i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~ 337 (745)
++++|+||+++ |++|||||||........+.+..++.++.++|++||+||||+|.... .+++..+++|+|||++
T Consensus 225 i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~ 304 (539)
T 3afg_A 225 IINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVD 304 (539)
T ss_dssp HHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEEC
T ss_pred HHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeec
Confidence 99999999986 89999999998765556788999999999999999999999998643 4568889999999852
Q ss_pred cccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCc
Q 045720 338 IDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGG 417 (745)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga 417 (745)
T Consensus 305 -------------------------------------------------------------------------------- 304 (539)
T 3afg_A 305 -------------------------------------------------------------------------------- 304 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCc
Q 045720 418 AAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGIL 497 (745)
Q Consensus 418 ~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~ 497 (745)
..+.+++||||||+. ++++
T Consensus 305 -----------------------------------------------------------~~~~~a~fSs~Gp~~--~~~~ 323 (539)
T 3afg_A 305 -----------------------------------------------------------KYDVITDFSSRGPTA--DNRL 323 (539)
T ss_dssp -----------------------------------------------------------TTSCBCSSSCCCCCT--TCBC
T ss_pred -----------------------------------------------------------CCcccccccCCCCCC--CCCC
Confidence 123678999999998 7899
Q ss_pred cceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCccc
Q 045720 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPIL 577 (745)
Q Consensus 498 KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~ 577 (745)
||||+|||++|+++++............|..++|||||||||||++|||+|++|+|++++||++|++||+++...+
T Consensus 324 kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~---- 399 (539)
T 3afg_A 324 KPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE---- 399 (539)
T ss_dssp CCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG----
T ss_pred cccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC----
Confidence 9999999999999986532111111135999999999999999999999999999999999999999999874321
Q ss_pred CCCCCCCCccccCCCccCcCCCCCC
Q 045720 578 DCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 578 ~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
.++..||+|+||+.+|++.
T Consensus 400 ------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 400 ------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp ------CSBTTTBTCBCCHHHHHTG
T ss_pred ------CCccCccCCccCHHHHhhh
Confidence 2567899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-59 Score=512.36 Aligned_cols=338 Identities=25% Similarity=0.368 Sum_probs=276.7
Q ss_pred CceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEcce
Q 045720 40 LQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENT 119 (745)
Q Consensus 40 ~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~~ 119 (745)
+.+|||+||++. .. ++++++. +.++.++|. .+++|+++++++++++|+++|+|++|++++.
T Consensus 2 ~~~~iV~~~~~~--~~----~~~~~~~------------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~ 62 (395)
T 2z2z_A 2 TIRVIVSVDKAK--FN----PHEVLGI------------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQ 62 (395)
T ss_dssp EEEEEEEECTTT--CC----HHHHHHT------------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCE
T ss_pred cEEEEEEECCCc--cH----HHHHHHc------------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeee
Confidence 578999999874 22 2233333 668999998 5999999999999999999999999999998
Q ss_pred ecccccCC-----------CCccccCC--CCCcccCCCCCCC--eEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045720 120 LHLHTTHT-----------PNFLGLHR--SSGFWKDSNFGKG--VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV 184 (745)
Q Consensus 120 ~~~~~~~s-----------~~~~g~~~--~~~~~~~g~~G~G--v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~ 184 (745)
+++..... ...|++.. .+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~---------------- 125 (395)
T 2z2z_A 63 AVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------- 125 (395)
T ss_dssp EEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG----------------
T ss_pred ecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc----------------
Confidence 87643211 12354432 46789998 9999 99999999999999999753
Q ss_pred CcccCccccceeeccCCCC---C-CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-C
Q 045720 185 GATCNNKLIGVRNFFCGKD---G-SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-C 259 (745)
Q Consensus 185 ~~~~~~kv~g~~~~~~~~~---~-~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~ 259 (745)
+...++|..+.. . ...|+.||||||||||+|.. + ..+ +.||||+|+|+.+|+++ ..+ +
T Consensus 126 -------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-n-------~~g-~~GvAp~a~l~~~kv~~-~~g~~ 188 (395)
T 2z2z_A 126 -------IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN-N-------DIG-VVGVAPGVQIYSVRVLD-ARGSG 188 (395)
T ss_dssp -------EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC-S-------SSS-CCCSSTTCEEEEEECSC-TTSEE
T ss_pred -------cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec-C-------CCc-eEEECCCCEEEEEEEec-CCCCc
Confidence 233344443310 0 24688999999999999873 1 112 37999999999999998 444 7
Q ss_pred ChHHHHHHHHHHHhC--------------------CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCC
Q 045720 260 PESAVIAGIDAAIED--------------------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319 (745)
Q Consensus 260 ~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~ 319 (745)
+.+++++||+||+++ +++|||||||... ....+..++.++.++|++||+||||+|..
T Consensus 189 ~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~ 265 (395)
T 2z2z_A 189 SYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAP 265 (395)
T ss_dssp EHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCS
T ss_pred cHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 788999999999998 9999999999863 24567778889999999999999999998
Q ss_pred CCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccce
Q 045720 320 HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGK 399 (745)
Q Consensus 320 ~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 399 (745)
...+++..+++|+|||++
T Consensus 266 ~~~~Pa~~~~vi~Vga~~-------------------------------------------------------------- 283 (395)
T 2z2z_A 266 SPSYPAAYPEVIAVGAID-------------------------------------------------------------- 283 (395)
T ss_dssp SCCBTTTSTTEEEEEEEC--------------------------------------------------------------
T ss_pred CCCCccCCCCEEEEEEec--------------------------------------------------------------
Confidence 888899999999999852
Q ss_pred EEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCC
Q 045720 400 VVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAP 479 (745)
Q Consensus 400 ivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 479 (745)
..+
T Consensus 284 -----------------------------------------------------------------------------~~~ 286 (395)
T 2z2z_A 284 -----------------------------------------------------------------------------SND 286 (395)
T ss_dssp -----------------------------------------------------------------------------TTS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 123
Q ss_pred eeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCC--------
Q 045720 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHP-------- 551 (745)
Q Consensus 480 ~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-------- 551 (745)
.+++||+||| +|+|||++|+|+++. +.|..++|||||||||||++|||+|++|
T Consensus 287 ~~a~fS~~G~----------~v~APG~~i~s~~~~---------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~ 347 (395)
T 2z2z_A 287 NIASFSNRQP----------EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILP 347 (395)
T ss_dssp CBCTTSCSSC----------SEEEECSSEEEEETT---------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCcccCCCC----------CEEeCCCCeeeecCC---------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 6789999997 679999999999987 3899999999999999999999999999
Q ss_pred -----CCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCC
Q 045720 552 -----NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 552 -----~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
.|++.+||++|++||+++.. +..+..||||+||+++|++.
T Consensus 348 ~~~~~~ls~~~v~~~L~~tA~~~~~-----------~g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 348 VGTFDDISKNTVRGILHITADDLGP-----------TGWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp CCCTTCCSSSSHHHHHHHHSBCCSS-----------SSSBTTTBTCBCCHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhhccccCC-----------CCCCCCccCceeCHHHHHHH
Confidence 99999999999999998743 23567899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-56 Score=502.11 Aligned_cols=355 Identities=20% Similarity=0.238 Sum_probs=276.5
Q ss_pred CCceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhc-CCCeEEEEEc
Q 045720 39 GLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMET-KKGFISARVE 117 (745)
Q Consensus 39 ~~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~-~p~V~~V~~~ 117 (745)
..+.|||++++.. .+.+++++. +.++.+.|. .+++|+++++++++++|++ +|+|++|+++
T Consensus 43 ~~~~yiv~~~~~~------~~~~~~~~~------------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~ 103 (471)
T 3t41_A 43 EELYYSVEYKNTA------TFNKLVKKK------------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINAT 103 (471)
T ss_dssp CCEEEEEEESCHH------HHHHHHHHH------------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEEC
T ss_pred CceEEEEEcCCHH------HHHHHHHhC------------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEec
Confidence 3568999888432 344555544 567888886 5999999999999999999 9999999999
Q ss_pred ceecccccCC----------CCccccCC---CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045720 118 NTLHLHTTHT----------PNFLGLHR---SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELV 184 (745)
Q Consensus 118 ~~~~~~~~~s----------~~~~g~~~---~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~ 184 (745)
..+++..... ...|++.. ...+|..+++|+||+|||||||||++||+|.++... +....-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~~-------~~~~~~ 176 (471)
T 3t41_A 104 CSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFST-------DSKNLV 176 (471)
T ss_dssp CSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBCT-------TCEECC
T ss_pred ceeccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCccc-------CCcccc
Confidence 8877754322 12344433 236899999999999999999999999999874211 100000
Q ss_pred CcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHH
Q 045720 185 GATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAV 264 (745)
Q Consensus 185 ~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i 264 (745)
....+.+......+....+.|..||||||||||+|+.. +.||||+|+|+.+|+++ +..+..+++
T Consensus 177 ---~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~-~~~~~~~~i 240 (471)
T 3t41_A 177 ---PLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFG-SKKTELLWV 240 (471)
T ss_dssp ---CTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCS-SSCCCHHHH
T ss_pred ---cCCCccCCCcccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEEEecc-CCCCcHHHH
Confidence 00001110000011111467889999999999998631 48999999999999998 667889999
Q ss_pred HHHHHHHHhCCCcEEEeccCCCCC-C------------CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc---------
Q 045720 265 IAGIDAAIEDGVDVLSLSFGLGLS-Q------------FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT--------- 322 (745)
Q Consensus 265 ~~ai~~a~~~g~dVIN~SlG~~~~-~------------~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~--------- 322 (745)
++||+||++++++|||||||.... . ...+.+..++.++.++|++||+||||+|.....
T Consensus 241 ~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~ 320 (471)
T 3t41_A 241 SKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQRE 320 (471)
T ss_dssp HHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTT
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccc
Confidence 999999999999999999997320 0 123567788888999999999999999987542
Q ss_pred ---------ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCC
Q 045720 323 ---------LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKS 393 (745)
Q Consensus 323 ---------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 393 (745)
+++..+++|+|||++
T Consensus 321 ~~~~~~~~~~Pa~~~~vitVgA~~-------------------------------------------------------- 344 (471)
T 3t41_A 321 YQGNGEVKDVPASMDNVVTVGSTD-------------------------------------------------------- 344 (471)
T ss_dssp CCSSSEEEEETTTSTTEEEEEEEC--------------------------------------------------------
T ss_pred cccCCceeeccccCCCeEEEEeeC--------------------------------------------------------
Confidence 668889999999852
Q ss_pred CcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEe
Q 045720 394 VDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVI 473 (745)
Q Consensus 394 ~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 473 (745)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCeeecccCCCCCCCCCCCccceeeeCCcc----------------------EEeeccCCCCCCCCcccceeeecC
Q 045720 474 GGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLN----------------------IIAAWKTTVDPLANRVYTFDIVSG 531 (745)
Q Consensus 474 ~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~----------------------I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
..+.+++||++||+. |||+|||++ |+++++. +.|..++|
T Consensus 345 ---~~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~---------~~~~~~sG 405 (471)
T 3t41_A 345 ---QKSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN---------GRYIYQAG 405 (471)
T ss_dssp ---TTSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT---------SSEEEECS
T ss_pred ---CCCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC---------CCEEeecc
Confidence 123678999999964 599999987 8999877 37999999
Q ss_pred CcchhHHHHHHHHHHHhhCC-CCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCC
Q 045720 532 TSMACPHLSGVAALLKSAHP-NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
||||||||||++|||+|++| .++|.+||++|++||++... .++..||||+||+.+|++.
T Consensus 406 TS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 406 TALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CCHHHHTTCBBCHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CCcCccccChhCHHHHHHH
Confidence 99999999999999999999 89999999999999997632 3677999999999999985
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=519.69 Aligned_cols=330 Identities=22% Similarity=0.258 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCCCh-HHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEcc
Q 045720 40 LQTYIIYVQKPEQGDL-DSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVEN 118 (745)
Q Consensus 40 ~~~yIV~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~ 118 (745)
+++|||+||++..... ...++.+..... . +....++.+.|++.|+||+++++++++++|+++|+|++||+++
T Consensus 75 pg~YIV~lk~~~~~~~~~~~~~~l~a~~~-~------~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~ 147 (692)
T 2p4e_P 75 PGTYVVVLKEETHLSQSERTARRLQAQAA-R------RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 147 (692)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHH-H------TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHHh-h------cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecc
Confidence 4599999998862211 111122111110 0 1335689999999999999999999999999999999999999
Q ss_pred eecccccCCCCccccCCC------CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccc
Q 045720 119 TLHLHTTHTPNFLGLHRS------SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKL 192 (745)
Q Consensus 119 ~~~~~~~~s~~~~g~~~~------~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv 192 (745)
.+... ...|++... ...|..+.+|+||+|+|||||||++||+|.++.. |.+
T Consensus 148 ~v~~~----~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~------------- 204 (692)
T 2p4e_P 148 SVFAQ----SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD------------- 204 (692)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred ccccC----CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc-------------
Confidence 87642 122555431 2368888999999999999999999999987521 110
Q ss_pred cceeecc---CCC--CCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHH
Q 045720 193 IGVRNFF---CGK--DGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAG 267 (745)
Q Consensus 193 ~g~~~~~---~~~--~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~a 267 (745)
+++. ++. ...+.|.+||||||||||+|+. .||||+|+|+.+|+++..+.++.+++++|
T Consensus 205 ---~~~~~d~dg~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~a 267 (692)
T 2p4e_P 205 ---FENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIG 267 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cccccCCCCCcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHH
Confidence 1111 000 0145789999999999999873 69999999999999983333788899999
Q ss_pred HHHHHhC------CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc-ccCCCCceEEeccccccc
Q 045720 268 IDAAIED------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT-LVNDAPWMLTVGASTIDR 340 (745)
Q Consensus 268 i~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~ 340 (745)
|+|++++ +++|||||||+.. ...+..++.++.++|++||+||||+|.+... +++..+++|+|||++.+.
T Consensus 268 I~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~ 343 (692)
T 2p4e_P 268 LEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD 343 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCC
Confidence 9999986 8999999999753 3455566668899999999999999987644 478899999999963221
Q ss_pred ceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEE
Q 045720 341 GITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAM 420 (745)
Q Consensus 341 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~ 420 (745)
..
T Consensus 344 ~~------------------------------------------------------------------------------ 345 (692)
T 2p4e_P 344 QP------------------------------------------------------------------------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccce
Q 045720 421 ILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPD 500 (745)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPD 500 (745)
...-+.||+||| |||
T Consensus 346 ---------------------------------------------------------a~~ss~fSn~G~--------~vD 360 (692)
T 2p4e_P 346 ---------------------------------------------------------VTLGTLGTNFGR--------CVD 360 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------cccccccCCCCC--------cee
Confidence 000123899997 459
Q ss_pred eeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 501 IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 501 i~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
|+|||++|+|+++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.+..
T Consensus 361 I~APG~~I~St~~~~~-------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 361 LFAPGEDIIGASSDCS-------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEecCCcEEeeccCCC-------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 9999999999998743 37899999999999999999999999999999999999999998653
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-55 Score=504.28 Aligned_cols=367 Identities=22% Similarity=0.249 Sum_probs=274.6
Q ss_pred CCCCceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCH----HHHHHhh--cCCC
Q 045720 37 KDGLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTA----EEVKAME--TKKG 110 (745)
Q Consensus 37 ~~~~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~----~~i~~L~--~~p~ 110 (745)
...+++|||+||+.. ..+++++.. +.++.+++. .+++++++++. +.+++|+ ++|+
T Consensus 28 ~~~~~~~IV~~k~~~------~~~~~~~~~------------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (671)
T 1r6v_A 28 EYTEGKILVGYNDRS------EVDKIVKAV------------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKG 88 (671)
T ss_dssp SBCTTEEEEEESSHH------HHHHHHHHH------------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSS
T ss_pred ccCCccEEEEECCCc------CHHHHHHhc------------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCC
Confidence 346799999999642 223334333 456788887 58999999864 3456676 4799
Q ss_pred eEEEEEcceecccc----c---C--------------------CCCccccCC--CCCc-ccCCCCCCCeEEEEEcCCCCC
Q 045720 111 FISARVENTLHLHT----T---H--------------------TPNFLGLHR--SSGF-WKDSNFGKGVIIGVLDTGITP 160 (745)
Q Consensus 111 V~~V~~~~~~~~~~----~---~--------------------s~~~~g~~~--~~~~-~~~g~~G~Gv~VaVIDtGid~ 160 (745)
|++|||+..+++.. . . ....|++.. ++.+ |+. ++|+||+|||||||||+
T Consensus 89 V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~ 167 (671)
T 1r6v_A 89 IRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDG 167 (671)
T ss_dssp EEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBT
T ss_pred ceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCC
Confidence 99999997654321 0 0 012344332 3456 888 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCC----CCCCCCCCCCChhHHHHhhcccCcCCCcccccCCC
Q 045720 161 GHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG----KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANG 236 (745)
Q Consensus 161 ~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~----~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g 236 (745)
+||+|.++- + .++++..+ .+.+..|.+||||||||||||..+ +.|
T Consensus 168 ~HpdL~~~~-------~----------------~g~~~~~~~~~p~~~d~~d~~gHGThVAGiIAa~~n--------g~g 216 (671)
T 1r6v_A 168 THPDLEGQV-------I----------------AGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------GKG 216 (671)
T ss_dssp TSGGGTTTB-------C----------------CEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------SSS
T ss_pred CCccccccE-------E----------------ecccccCCCcCCCCCCCccCCCcchhhhhhhhccCC--------CCc
Confidence 999998641 1 11111110 010344678999999999999731 112
Q ss_pred ceeeecCCceEEEEEeeCC-----CCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEE
Q 045720 237 TAVGMAPLAHLAVYKVCNP-----NVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVS 310 (745)
Q Consensus 237 ~~~GvAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV 310 (745)
+.||||+|+|+.+|+++. ..+ ...+.+++||+||+++|++|||||||+.. +...+..++.+|.++|+++|
T Consensus 217 -v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvV 292 (671)
T 1r6v_A 217 -IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMV 292 (671)
T ss_dssp -CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEE
T ss_pred -eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999983 122 34567899999999999999999999853 34678888889999999999
Q ss_pred EecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCC
Q 045720 311 IAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPE 389 (745)
Q Consensus 311 ~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 389 (745)
+||||+|.+. ..+++..|++|+|||++.+..
T Consensus 293 aAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------------------ 324 (671)
T 1r6v_A 293 VSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------------ 324 (671)
T ss_dssp EECCSCSSSCCCCBTTTSTTCEEEEEEEEETT------------------------------------------------
T ss_pred EeCCCCCCCCCccCcccCCCeEEEEEEcCCCC------------------------------------------------
Confidence 9999999875 567888999999999532110
Q ss_pred CCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEec
Q 045720 390 TLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMK 469 (745)
Q Consensus 390 ~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 469 (745)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC---------CCCcccceeeecCCcchhHHHH
Q 045720 470 GTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP---------LANRVYTFDIVSGTSMACPHLS 540 (745)
Q Consensus 470 ~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~---------~~~~~~~y~~~sGTSmAaP~VA 540 (745)
...+++||++||.. ||+|||++|+++++..... .....+.|..++||||||||||
T Consensus 325 --------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VA 388 (671)
T 1r6v_A 325 --------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVT 388 (671)
T ss_dssp --------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHH
T ss_pred --------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHH
Confidence 01478999999975 9999999999998764211 1112357999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCceecCCCCCc
Q 045720 541 GVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDY 613 (745)
Q Consensus 541 G~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~ 613 (745)
|++|||+|++|++++.+||++|++||+++... ..+..||||+||+.+|++..|..+....||
T Consensus 389 GvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~-----------g~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 389 GVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-----------CCCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 99999999999999999999999999987432 345689999999999999877665443333
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=483.85 Aligned_cols=371 Identities=24% Similarity=0.351 Sum_probs=267.8
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC-CCCCCCCCChh
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD-GSAIDYTGHGT 214 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~-~~~~d~~gHGT 214 (745)
++.+|+.+ |+||+|||||||||++||+|.++ ++..+++....+ ..+.|+.||||
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~~d~~gHGT 67 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPGNNNAHGT 67 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCCSSCCHHH
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-----------------------cccCcccCCCCCCCCCCCCCCcHH
Confidence 46689865 77999999999999999999864 111122221111 14668899999
Q ss_pred HHHHhhcccCcCCCcccccCCCceeeecCCc--eEEEEEeeCCCCC-CChHHHHHHHHHHHhC-CCcEEEeccCCCCCCC
Q 045720 215 HTASTAAGNFVHGANIFGQANGTAVGMAPLA--HLAVYKVCNPNVY-CPESAVIAGIDAAIED-GVDVLSLSFGLGLSQF 290 (745)
Q Consensus 215 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A--~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-g~dVIN~SlG~~~~~~ 290 (745)
||||||+|..+ ..+ +.||||+| +|+.+|+++ ..+ ++.+++++||+||+++ |++|||||||....
T Consensus 68 ~vAgiia~~~~--------~~g-~~GvAP~a~~~l~~~kv~~-~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~~-- 135 (441)
T 1y9z_A 68 HVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFN-EAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS-- 135 (441)
T ss_dssp HHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEE-TTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC--
T ss_pred HHHHHHhcccC--------CCC-ceEecCCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCCC--
Confidence 99999999742 122 48999995 999999998 554 7888999999999999 99999999998632
Q ss_pred CCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceE-------------------EEEEcCCC
Q 045720 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGIT-------------------ISVRLGNQ 351 (745)
Q Consensus 291 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~-------------------~~~~~~~g 351 (745)
...+..++.++.++|++||+||||+|.....+++..+++|+|||++.+.... ..+..+++
T Consensus 136 -~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~~~g~g 214 (441)
T 1y9z_A 136 -TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEG 214 (441)
T ss_dssp -BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEECSTTCE
T ss_pred -CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccccCCCc
Confidence 3456778889999999999999999998888899999999999987654321 01111111
Q ss_pred c----eeeeeecccCCCCCCC-cee--EEecCCC--C--CCCcCCCCCC--CCCCCcccceEEEEecCCc----------
Q 045720 352 E----TYDGEALWQWTDIPSK-RLP--LVYPDAR--N--HSTTTFCSPE--TLKSVDVKGKVVLCQRGAS---------- 408 (745)
Q Consensus 352 ~----~~~g~~~~~~~~~~~~-~~~--~~~~~~~--~--~~~~~~c~~~--~~~~~~~~gkivl~~~~~~---------- 408 (745)
. .+.+.+++....++.. .++ +.|.... + ......|... .++..+++|||++|+|+.+
T Consensus 215 ~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~ 294 (441)
T 1y9z_A 215 RLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINS 294 (441)
T ss_dssp EEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHH
T ss_pred ccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCcccccHHHH
Confidence 1 2223333221110000 000 0110000 0 0112447543 4577899999999999864
Q ss_pred hhhhhhcCceEEEEeecCCC-Cc-----cccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeee
Q 045720 409 GDDVLNAGGAAMILMNDELF-GD-----STLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVV 482 (745)
Q Consensus 409 ~~~~~~~ga~~~i~~~~~~~-~~-----~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 482 (745)
..+++.+|+.++|++++... +. ........+|.+.++..+|..|+.++.+. ++
T Consensus 295 ~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t----------------- 353 (441)
T 1y9z_A 295 TKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT----------------- 353 (441)
T ss_dssp HHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE-----------------
T ss_pred HHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc-----------------
Confidence 67788999999999987532 21 11223568999999999999998875321 11
Q ss_pred cccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHh
Q 045720 483 AFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAM 562 (745)
Q Consensus 483 ~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L 562 (745)
+ ++... ..|..+||||||||||||++|||+|+||+|+|++||++|
T Consensus 354 ------------------~--------~~~~~---------~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L 398 (441)
T 1y9z_A 354 ------------------V--------SNQGN---------QDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAAL 398 (441)
T ss_dssp ------------------E--------EEEEE---------ESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred ------------------c--------ccccC---------CCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHH
Confidence 1 11111 479999999999999999999999999999999999999
Q ss_pred hcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCceecCCCCCcccccccCCC
Q 045720 563 MTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNY 622 (745)
Q Consensus 563 ~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~~~~~~~ 622 (745)
|+||++++..+ .+.+||+|+||+.+|++ |+.|||..++
T Consensus 399 ~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~~-----------~~~~lc~~~~ 436 (441)
T 1y9z_A 399 NATADDLSVAG-----------RDNQTGYGMINAVAAKA-----------YLDESCTGPT 436 (441)
T ss_dssp HHHSBCCSSSS-----------CBTTTBTCBCCHHHHHH-----------HHHHCTTCC-
T ss_pred HhhchhhccCC-----------CcccccccccCHHHHHH-----------HHHhhhcCCC
Confidence 99999885432 45689999999999975 9999999865
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=439.83 Aligned_cols=265 Identities=28% Similarity=0.393 Sum_probs=216.9
Q ss_pred cccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCC
Q 045720 131 LGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208 (745)
Q Consensus 131 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d 208 (745)
|++.. ++.+|+.+..|+||+|||||||||++||+|.++ ++..++|.+... .+.|
T Consensus 13 w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------~~~~~~~~~~~~-~~~d 68 (280)
T 1dbi_A 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDNDY-DPMD 68 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTBS-CCCC
T ss_pred CChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC-----------------------cccceeccCCCC-CCCC
Confidence 44443 456999998888999999999999999999763 445667766543 5678
Q ss_pred CCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045720 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS 288 (745)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (745)
..+|||||||||+|...+.. .+.||||+|+|+.+|+++....++.++++++|+||+++|++|||||||...
T Consensus 69 ~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~- 139 (280)
T 1dbi_A 69 LNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC- 139 (280)
T ss_dssp SSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred CCCcHHHHHHHHhCcCCCCC--------cceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 99999999999999853321 147999999999999998333478899999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 289 QFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 289 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
....+..++.++.++|++||+||||+|.....+++..+++|+|||++
T Consensus 140 --~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------- 186 (280)
T 1dbi_A 140 --HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------------------------- 186 (280)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC-------------------------------
T ss_pred --CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC-------------------------------
Confidence 34677888889999999999999999988778889999999999852
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||.. ||+|||++|+++++. +.|..
T Consensus 187 ----------------------------~~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~---------~~~~~ 221 (280)
T 1dbi_A 187 ----------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG---------NRYAY 221 (280)
T ss_dssp ----------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT---------TEEEE
T ss_pred ----------------------------CCCCcCCCCCCCCCc--------eEEEecCCeEeecCC---------CCEEE
Confidence 123678999999865 999999999999886 38999
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
++|||||||||||++|||++ |.+++.|||++|++||+++.. ....||+|+||+++|++
T Consensus 222 ~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 222 MSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-------------CCCcccCCEECHHHHhc
Confidence 99999999999999999987 899999999999999998742 23579999999999876
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=438.19 Aligned_cols=262 Identities=33% Similarity=0.497 Sum_probs=222.7
Q ss_pred cccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCC
Q 045720 131 LGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208 (745)
Q Consensus 131 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d 208 (745)
|++.. ++.+|..+++|+||+|+|||||| .+||+|+ +...++|..+.. .+.|
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-------------------------~~~~~~~~~~~~-~~~d 58 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-------------------------IRGGASFVPGEP-STQD 58 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-------------------------EEEEEECSTTCC-SCSC
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-------------------------ccCCcccCCCCC-CCCC
Confidence 44443 45689999999999999999999 8999994 223455655432 4678
Q ss_pred CCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045720 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS 288 (745)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (745)
..+|||||||||+|..+ .. .+.||||+|+|+.+|+++....+..++++++|+|+++++++|||||||...
T Consensus 59 ~~gHGT~vAgiia~~~~--------~~-~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~- 128 (269)
T 1gci_A 59 GNGHGTHVAGTIAALNN--------SI-GVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS- 128 (269)
T ss_dssp SSSHHHHHHHHHHCCCS--------SS-BCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred CCCChHHHHHHHhcCcC--------CC-CcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC-
Confidence 99999999999998731 11 137999999999999998333478889999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 289 QFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 289 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
....+..++.++.++|++||+||||+|.....+++..+++|+||+++
T Consensus 129 --~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------------- 175 (269)
T 1gci_A 129 --PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD------------------------------- 175 (269)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC-------------------------------
T ss_pred --CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec-------------------------------
Confidence 24577888889999999999999999998888899999999999852
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||.. ||+|||++|+++++. +.|..
T Consensus 176 ----------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~---------~~~~~ 210 (269)
T 1gci_A 176 ----------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------STYAS 210 (269)
T ss_dssp ----------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------TEEEE
T ss_pred ----------------------------CCCCCCCCCCCCCCc--------ceEecCCCeEeecCC---------CCEEE
Confidence 123578999999864 999999999999987 38999
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||||+||+++|++
T Consensus 211 ~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 211 LNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccCccCHHHHcC
Confidence 999999999999999999999999999999999999999772 45689999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-53 Score=440.68 Aligned_cols=263 Identities=32% Similarity=0.484 Sum_probs=220.8
Q ss_pred cccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCC
Q 045720 131 LGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208 (745)
Q Consensus 131 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d 208 (745)
|++.. ++.+|..+++|+||+|+|||||||++||+|+ +...++|..+.. ...|
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~~-~~~d 59 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGEA-YNTD 59 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTCC-TTCC
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-------------------------CCCCccccCCCC-CCCC
Confidence 44433 4568999999999999999999999999994 223455555432 4578
Q ss_pred CCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045720 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS 288 (745)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (745)
..+|||||||||+|..+ .. .+.||||+|+|+.+|+++....+..++++++|+||++++++|||||||...
T Consensus 60 ~~gHGT~vAgiia~~~~--------~~-g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~- 129 (274)
T 1r0r_E 60 GNGHGTHVAGTVAALDN--------TT-GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS- 129 (274)
T ss_dssp SSSHHHHHHHHHHCCSS--------SS-BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-
T ss_pred CCCCHHHHHHHHHccCC--------CC-ceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC-
Confidence 89999999999998731 11 147999999999999998333377889999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHhCCcEEEEecCCCCCCC----CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCC
Q 045720 289 QFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH----YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTD 364 (745)
Q Consensus 289 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 364 (745)
....+..++.++.++|+++|+||||+|... ..+++..+++|+||+++
T Consensus 130 --~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------------------------- 180 (274)
T 1r0r_E 130 --GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD--------------------------- 180 (274)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC---------------------------
T ss_pred --CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec---------------------------
Confidence 246778888899999999999999999763 45678889999999852
Q ss_pred CCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEe
Q 045720 365 IPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccc
Q 045720 445 SHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVY 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
..+.++.||++||. |||+|||++|+++++. +
T Consensus 181 --------------------------------~~~~~~~~S~~G~~--------~di~APG~~i~s~~~~---------~ 211 (274)
T 1r0r_E 181 --------------------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPT---------N 211 (274)
T ss_dssp --------------------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETT---------T
T ss_pred --------------------------------CCCCcCccCCCCCC--------ceEEeCCCCeEeecCC---------C
Confidence 12367889999984 5999999999999987 3
Q ss_pred ceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||||+||+++|++
T Consensus 212 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCCcccCccCHHHHhC
Confidence 8999999999999999999999999999999999999999999762 45789999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=438.64 Aligned_cols=265 Identities=31% Similarity=0.486 Sum_probs=221.4
Q ss_pred cccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCC
Q 045720 131 LGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAID 208 (745)
Q Consensus 131 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d 208 (745)
|++.. ++.+|..+++|+||+|||||||||++||+|+. ..+++|..+......|
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-------------------------~~g~~~~~~~~~~~~d 60 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-------------------------AGGASMVPSETNPFQD 60 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-------------------------EEEEECCTTCCCTTCC
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-------------------------cCCccccCCCCCCCCC
Confidence 55543 45689999999999999999999999999952 2234454433213468
Q ss_pred CCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045720 209 YTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS 288 (745)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (745)
..+|||||||||+|... ..+ +.||||+|+|+.+|+++....+..++++++|+|+++++++|||||||...
T Consensus 61 ~~gHGT~vAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~- 130 (281)
T 1to2_E 61 NNSHGTHVAGTVAALNN--------SIG-VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS- 130 (281)
T ss_dssp SSSHHHHHHHHHHCCSS--------SSS-BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-
T ss_pred CCCcHHHHHHHHhccCC--------CCc-ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC-
Confidence 89999999999998731 112 47999999999999998333377889999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHhCCcEEEEecCCCCCC----CCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCC
Q 045720 289 QFYDNGIAKATFEAIRRGIFVSIAAGNSGPN----HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTD 364 (745)
Q Consensus 289 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~----~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 364 (745)
....+..++.++.++|++||+||||+|.. ...+++..|++|+||++.
T Consensus 131 --~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------------------------- 181 (281)
T 1to2_E 131 --GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD--------------------------- 181 (281)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC---------------------------
T ss_pred --CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec---------------------------
Confidence 24678888889999999999999999976 345678889999999852
Q ss_pred CCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEe
Q 045720 365 IPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccc
Q 045720 445 SHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVY 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
..+.++.||++||.. ||+|||++|+++++. +
T Consensus 182 --------------------------------~~~~~~~fS~~G~~~--------di~APG~~i~s~~~~---------~ 212 (281)
T 1to2_E 182 --------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPG---------N 212 (281)
T ss_dssp --------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETT---------T
T ss_pred --------------------------------CCCCcCCcCCCCCCc--------eEEecCCCeEeecCC---------C
Confidence 123678999999854 999999999999987 3
Q ss_pred ceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCC
Q 045720 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
.|..++|||||||+|||++|||+|++|+|++.|||++|++||+++. +++.||||+||+++|+++
T Consensus 213 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 213 KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTSS
T ss_pred CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCCcccceecHHHHhhh
Confidence 8999999999999999999999999999999999999999999772 467899999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=463.02 Aligned_cols=293 Identities=20% Similarity=0.219 Sum_probs=199.7
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc---ccCccc-----------cceeeccCCC
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA---TCNNKL-----------IGVRNFFCGK 202 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~---~~~~kv-----------~g~~~~~~~~ 202 (745)
.++|+++..|+||+|||||||||++||+|++....+....|+..++.... ..+..+ .....+..+.
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCCC
Confidence 45999999999999999999999999999987777777788776654321 000000 0001111111
Q ss_pred CCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-----CChHHHHHHHHHHHhCCCc
Q 045720 203 DGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-----CPESAVIAGIDAAIEDGVD 277 (745)
Q Consensus 203 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g~d 277 (745)
. .+.|.+||||||||||+|+... .+.||||+|+|+.+|++....+ ....+++++|+||+++|++
T Consensus 101 ~-~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~ 169 (357)
T 4h6x_A 101 K-DRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGAN 169 (357)
T ss_dssp H-HHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCS
T ss_pred C-CCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCC
Confidence 1 3456789999999999987421 2479999999999999752211 3456789999999999999
Q ss_pred EEEeccCCCC-CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeee
Q 045720 278 VLSLSFGLGL-SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDG 356 (745)
Q Consensus 278 VIN~SlG~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 356 (745)
|||||||... .....+.+..++.++.++|+++|+||||+|.....+++..+++|+|||++
T Consensus 170 Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------------- 230 (357)
T 4h6x_A 170 IIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK------------------- 230 (357)
T ss_dssp EEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC-------------------
T ss_pred EEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec-------------------
Confidence 9999999864 33456778888889999999999999999998888899999999999852
Q ss_pred eecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccc
Q 045720 357 EALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQR 436 (745)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 436 (745)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCC
Q 045720 437 NSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTV 516 (745)
Q Consensus 437 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~ 516 (745)
..+.++.|||||+.. .||||+|||++|+++++.+
T Consensus 231 ----------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~~- 264 (357)
T 4h6x_A 231 ----------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILGAQPCT- 264 (357)
T ss_dssp ----------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEECCTTC-
T ss_pred ----------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEeccCCC-
Confidence 224678999999753 6899999999999998875
Q ss_pred CCCCCcccceeeecCCcchhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCC
Q 045720 517 DPLANRVYTFDIVSGTSMACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAG 592 (745)
Q Consensus 517 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 592 (745)
+.|..++|||||||||||++|||++ ++|.|+++|||++|++||++++... ...+..||+|
T Consensus 265 -------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G 328 (357)
T 4h6x_A 265 -------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRG 328 (357)
T ss_dssp -------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-----------------------CTTC
T ss_pred -------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCcccceeE
Confidence 3678899999999999999999995 4668999999999999999875321 2355689999
Q ss_pred ccCcCCCCC
Q 045720 593 QVNPSKAND 601 (745)
Q Consensus 593 ~id~~~Al~ 601 (745)
+||+.+|++
T Consensus 329 ~vn~~~A~~ 337 (357)
T 4h6x_A 329 FVNIPGAMK 337 (357)
T ss_dssp BCCHHHHHH
T ss_pred EecHHHHHH
Confidence 999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-52 Score=434.28 Aligned_cols=259 Identities=31% Similarity=0.432 Sum_probs=221.4
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|+.+ +|+||+|||||||||++||+|.++ ++..++|.++.. .+.|..+||||
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~~-~~~d~~gHGT~ 74 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDNDS-TPQNGNGHGTH 74 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTBS-CCCCSSSHHHH
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC-----------------------ccccccccCCCC-CCCCCCCcHHH
Confidence 45689987 799999999999999999999863 455667776543 56789999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||||+|...++. + +.||||+|+|+.+|+++....++.+++++||+||+++|++|||||||... ..+.+
T Consensus 75 vAgiia~~~~n~~-------g-~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~l 143 (279)
T 1thm_A 75 CAGIAAAVTNNST-------G-IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSGL 143 (279)
T ss_dssp HHHHHHCCCSSSS-------S-CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHH
T ss_pred HHHHHhCccCCCC-------c-cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC---CCHHH
Confidence 9999999853322 2 37999999999999998334478889999999999999999999999863 34677
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..++.++.++|+++|+||||+|.....+++..+++|+||++.
T Consensus 144 ~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~-------------------------------------- 185 (279)
T 1thm_A 144 QQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD-------------------------------------- 185 (279)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC--------------------------------------
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC--------------------------------------
Confidence 888889999999999999999988888899999999999852
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++||.. ||+|||++|+++++. +.|..++|||||
T Consensus 186 ---------------------~~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~---------~~~~~~sGTS~A 227 (279)
T 1thm_A 186 ---------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLSGTSMA 227 (279)
T ss_dssp ---------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEECSHHHH
T ss_pred ---------------------CCCCcCCcCCCCCce--------EEEEcCCCeEEEeCC---------CCEEEcccHHHH
Confidence 123678999999865 999999999999987 389999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||||||++||| ++|.+++.+||++|++||+++... ...||+|+||+++|++
T Consensus 228 aP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 228 TPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------------TTTBSSEECCHHHHHH
T ss_pred HHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------------CccccCCeeCHHHHhc
Confidence 99999999999 579999999999999999987432 1479999999999875
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-52 Score=444.71 Aligned_cols=267 Identities=27% Similarity=0.411 Sum_probs=218.3
Q ss_pred ccccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC--CC-
Q 045720 130 FLGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK--DG- 204 (745)
Q Consensus 130 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~--~~- 204 (745)
.|++.. ++.+|+.+++|+||+|||||||||++||+|.++ +..+++|..++ +.
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~ 78 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER-----------------------IIGGVNLTTDYGGDET 78 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG-----------------------EEEEEECSSGGGGCTT
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc-----------------------ccCCccccCCCCCCCC
Confidence 355543 466999999999999999999999999999753 44455565442 11
Q ss_pred CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHh------CCCc
Q 045720 205 SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIE------DGVD 277 (745)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~------~g~d 277 (745)
...|..+|||||||||+|... +.+ +.||||+|+|+.+|+++ ..+ ++.+++++||+||++ .+++
T Consensus 79 ~~~d~~gHGT~VAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~~~~~~~~~~ 148 (327)
T 2x8j_A 79 NFSDNNGHGTHVAGTVAAAET--------GSG-VVGVAPKADLFIIKALS-GDGSGEMGWIAKAIRYAVDWRGPKGEQMR 148 (327)
T ss_dssp CCCCSSSHHHHHHHHHHCCCC--------SSB-CCCSSTTCEEEEEECSC-TTSEECHHHHHHHHHHHHHCCCTTSCCCS
T ss_pred CCCCCCCchHHHHHHHhccCC--------CCC-cEeeCCCCEEEEEEeEC-CCCCcCHHHHHHHHHHHHhhcccccCCce
Confidence 356889999999999999731 111 48999999999999998 444 778899999999999 8999
Q ss_pred EEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCC-----CcccCCCCceEEecccccccceEEEEEcCCCc
Q 045720 278 VLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH-----YTLVNDAPWMLTVGASTIDRGITISVRLGNQE 352 (745)
Q Consensus 278 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 352 (745)
|||||||... ....+..++.++.++|++||+||||+|... ..+|+..+++|+|||++
T Consensus 149 Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~--------------- 210 (327)
T 2x8j_A 149 IITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD--------------- 210 (327)
T ss_dssp EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC---------------
T ss_pred EEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC---------------
Confidence 9999999863 246778888899999999999999999752 45678889999999852
Q ss_pred eeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccc
Q 045720 353 TYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDST 432 (745)
Q Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~ 432 (745)
T Consensus 211 -------------------------------------------------------------------------------- 210 (327)
T 2x8j_A 211 -------------------------------------------------------------------------------- 210 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeec
Q 045720 433 LIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAW 512 (745)
Q Consensus 433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~ 512 (745)
..+.++.||++||. |||+|||++|++++
T Consensus 211 --------------------------------------------~~~~~~~fS~~G~~--------~di~APG~~i~s~~ 238 (327)
T 2x8j_A 211 --------------------------------------------FDLRLSDFTNTNEE--------IDIVAPGVGIKSTY 238 (327)
T ss_dssp --------------------------------------------TTCCBSCC---CCC--------CSEEEECSSEEEEC
T ss_pred --------------------------------------------CCCCCCCccCCCCC--------ceEecCcCceEeec
Confidence 12367899999985 49999999999998
Q ss_pred cCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhh-----CCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCcc
Q 045720 513 KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSA-----HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLY 587 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 587 (745)
+. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++. .++.
T Consensus 239 ~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g-------------~~~~ 296 (327)
T 2x8j_A 239 LD---------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG-------------FTAQ 296 (327)
T ss_dssp ST---------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS-------------SCHH
T ss_pred CC---------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC-------------CCCC
Confidence 76 37999999999999999999999999 999999999999999999773 2567
Q ss_pred ccCCCccCcCCCCC
Q 045720 588 AVGAGQVNPSKAND 601 (745)
Q Consensus 588 ~~G~G~id~~~Al~ 601 (745)
.||+|+||+.+|++
T Consensus 297 ~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 297 AEGNGFLTLDLVER 310 (327)
T ss_dssp HHTTCEECTTHHHH
T ss_pred ceeeeEECHHHHHH
Confidence 89999999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=433.11 Aligned_cols=286 Identities=28% Similarity=0.393 Sum_probs=228.3
Q ss_pred ccccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC---C
Q 045720 130 FLGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD---G 204 (745)
Q Consensus 130 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~---~ 204 (745)
.|++.. ++.+|..+++|+||+|||||||||++||+|.++ +...++|..... .
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------~~~~~~~~~~~~~~~~ 63 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-----------------------ccccccccCCCCCCCC
Confidence 355443 577999999999999999999999999999864 334455654321 1
Q ss_pred CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCC-----cEE
Q 045720 205 SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV-----DVL 279 (745)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~-----dVI 279 (745)
...|..+|||||||||+|.... ....+.||||+|+|+.+|+++..+.++.++++++|+|++++++ +||
T Consensus 64 ~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vi 136 (310)
T 2ixt_A 64 SCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (310)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEE
Confidence 4568899999999999988421 1122489999999999999983334688899999999999887 999
Q ss_pred EeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCC--CCcccCCCCceEEecccccccceEEEEEcCCCceeeee
Q 045720 280 SLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN--HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGE 357 (745)
Q Consensus 280 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 357 (745)
|||||... ....+..++.++.++|++||+||||+|.. ...+++..+++|+||++....
T Consensus 137 n~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~----------------- 196 (310)
T 2ixt_A 137 SMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ----------------- 196 (310)
T ss_dssp EECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-----------------
T ss_pred EEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-----------------
Confidence 99999863 24667788889999999999999999976 456778889999999852100
Q ss_pred ecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccc
Q 045720 358 ALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRN 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 437 (745)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCC--eeecccCCCCCCCC----CCCccceeeeCCccEEee
Q 045720 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAP--QVVAFSGRGPSRIS----PGILKPDIIGPGLNIIAA 511 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----~g~~KPDi~APG~~I~sa 511 (745)
..+ .++.||++||.... .++.||||+|||++|+++
T Consensus 197 ---------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~ 237 (310)
T 2ixt_A 197 ---------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYST 237 (310)
T ss_dssp ---------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEE
T ss_pred ---------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeee
Confidence 011 57889999995421 124599999999999999
Q ss_pred ccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCC
Q 045720 512 WKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGA 591 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~ 591 (745)
++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+. ....+..+..|||
T Consensus 238 ~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~~a~~g~d~~~G~ 304 (310)
T 2ixt_A 238 WYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIGDDYASGF 304 (310)
T ss_dssp CTT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCSSSBTTTBT
T ss_pred cCC---------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----cccccCCcccccc
Confidence 876 379999999999999999999999999999999999999999998764321 1134667889999
Q ss_pred CccCcC
Q 045720 592 GQVNPS 597 (745)
Q Consensus 592 G~id~~ 597 (745)
|++|+.
T Consensus 305 G~~~vq 310 (310)
T 2ixt_A 305 GFARVQ 310 (310)
T ss_dssp CBCCC-
T ss_pred ceeecC
Confidence 999963
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=433.52 Aligned_cols=264 Identities=25% Similarity=0.308 Sum_probs=211.9
Q ss_pred CCCC-CCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC-CCCCCCCCChhHHHHhh
Q 045720 143 SNFG-KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD-GSAIDYTGHGTHTASTA 220 (745)
Q Consensus 143 g~~G-~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~-~~~~d~~gHGThVAGii 220 (745)
.++| +||+|||||||||++||+|.++. +..+++..... ....|.+||||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~-----------------------~~~~~~~~~~~~~~d~~~~gHGT~VAGii 59 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD-----------------------LTVLPTLAPTAARSDGFMSAHGTHVASII 59 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE-----------------------EEECCCSSCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe-----------------------eecCcCCCCCCCCCCCCCCCcccceeehh
Confidence 3678 79999999999999999998641 11222222211 12334578999999999
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCC-CCCCCchHHHH
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGL-SQFYDNGIAKA 298 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~-~~~~~~~~~~a 298 (745)
+|+... .+.||||+|+|+.+|++....+ .+..+++++|+||++++++|||||||... .......+..+
T Consensus 60 ag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~a 129 (282)
T 3zxy_A 60 FGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENA 129 (282)
T ss_dssp HCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHH
T ss_pred hccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHH
Confidence 987422 2479999999999999863333 67778999999999999999999999754 23344567788
Q ss_pred HHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCC
Q 045720 299 TFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDAR 378 (745)
Q Consensus 299 ~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 378 (745)
+.++.++|+++|+||||+|.....+++..+++|+|||.+
T Consensus 130 i~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~----------------------------------------- 168 (282)
T 3zxy_A 130 VSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD----------------------------------------- 168 (282)
T ss_dssp HHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC-----------------------------------------
T ss_pred HHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc-----------------------------------------
Confidence 889999999999999999998888899999999999852
Q ss_pred CCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHc
Q 045720 379 NHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 379 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHH
Q 045720 459 TSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPH 538 (745)
Q Consensus 459 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~ 538 (745)
..+.++.||+||+. ..||||+|||.+|+++++.+ .|..++||||||||
T Consensus 169 ------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~---------~~~~~sGTS~AaP~ 216 (282)
T 3zxy_A 169 ------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG---------GTERLSGTAFATPI 216 (282)
T ss_dssp ------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS---------CEEEECSHHHHHHH
T ss_pred ------------------CCCccccccCCCCC-----ccccceeccCcceeeecCCC---------ceeecCCCcccchH
Confidence 12367889999975 47899999999999999874 79999999999999
Q ss_pred HHHHHHHHHhhC----CCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 539 LSGVAALLKSAH----PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 539 VAG~aALl~q~~----p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
|||++|||+|++ |.++|+|||++|++||++++.. .+.....||+|+||+.+|++
T Consensus 217 vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~---------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 217 VSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD---------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------CCCccCceeeeEeCHHHHHH
Confidence 999999999874 7899999999999999977432 23456689999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=434.58 Aligned_cols=268 Identities=28% Similarity=0.430 Sum_probs=221.5
Q ss_pred ccccCC--CCCcccCCCCCC--CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC-C
Q 045720 130 FLGLHR--SSGFWKDSNFGK--GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD-G 204 (745)
Q Consensus 130 ~~g~~~--~~~~~~~g~~G~--Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~-~ 204 (745)
.|++.. ++.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+.. .
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------~~~~~~~~~~~~~~ 64 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------IAWCVSTLRGKVST 64 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------EEEEEECGGGCCBC
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------cccCccccCCccCC
Confidence 355443 56799998 999 999999999999999999753 333344443320 0
Q ss_pred ---CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC-------
Q 045720 205 ---SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED------- 274 (745)
Q Consensus 205 ---~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~------- 274 (745)
...|..+|||||||||+|.. + ..+ +.||||+|+|+.+|+++..+.+..++++++|+||+++
T Consensus 65 ~~~~~~d~~gHGT~vAgiia~~~-n-------~~g-~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~ 135 (320)
T 2z30_A 65 KLRDCADQNGHGTHVIGTIAALN-N-------DIG-VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADK 135 (320)
T ss_dssp CHHHHBCSSSHHHHHHHHHHCCS-S-------SBS-CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHccc-C-------CCc-eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCccccccc
Confidence 23678999999999999872 1 111 3799999999999999833337788999999999987
Q ss_pred -------------CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccc
Q 045720 275 -------------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRG 341 (745)
Q Consensus 275 -------------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~ 341 (745)
+++|||||||... ....+..++.++.++|++||+||||+|.....+++..|++|+|||+.
T Consensus 136 ~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---- 208 (320)
T 2z30_A 136 DGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID---- 208 (320)
T ss_dssp TSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----
T ss_pred ccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeC----
Confidence 9999999999864 24567778888999999999999999998888899999999999852
Q ss_pred eEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEE
Q 045720 342 ITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMI 421 (745)
Q Consensus 342 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i 421 (745)
T Consensus 209 -------------------------------------------------------------------------------- 208 (320)
T 2z30_A 209 -------------------------------------------------------------------------------- 208 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCcccee
Q 045720 422 LMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDI 501 (745)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi 501 (745)
..+.++.||++|| +|
T Consensus 209 -------------------------------------------------------~~~~~~~~S~~g~----------~v 223 (320)
T 2z30_A 209 -------------------------------------------------------SNDNIASFSNRQP----------EV 223 (320)
T ss_dssp -------------------------------------------------------TTSCBCTTSCSSC----------SE
T ss_pred -------------------------------------------------------CCCCcCcccCCCC----------CE
Confidence 1236789999996 78
Q ss_pred eeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHhhccccc
Q 045720 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH-------------PNWSHAAIKSAMMTTADT 568 (745)
Q Consensus 502 ~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------p~ls~~~vk~~L~~TA~~ 568 (745)
+|||++|+++++. +.|..++|||||||||||++|||+|++ |.+++.+||++|++||++
T Consensus 224 ~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~ 294 (320)
T 2z30_A 224 SAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 294 (320)
T ss_dssp EEECSSEEEEETT---------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBC
T ss_pred EeCCCCeEEeccC---------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCcc
Confidence 9999999999987 389999999999999999999999999 999999999999999998
Q ss_pred ccCCCCcccCCCCCCCCccccCCCccCcCCCCCC
Q 045720 569 VNLEGKPILDCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
+.. +..+..||||+||+++|++.
T Consensus 295 ~~~-----------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 295 LGP-----------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CSS-----------SSSBTTTBTCBCCHHHHHHH
T ss_pred CCC-----------CCCCCCcCCceeCHHHHHHH
Confidence 743 23567899999999999863
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=436.00 Aligned_cols=271 Identities=25% Similarity=0.340 Sum_probs=219.2
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHH
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHT 216 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThV 216 (745)
+++|+....++||+|||||||||++||+|.++. +.+..++..+......|..+|||||
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~----------------------~~~~~~~~~~~~~~~~d~~gHGThV 68 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGAD----------------------LTRLPSLVSGEANANGSMSTHGTHV 68 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE----------------------EEECC----------CCCCHHHHHH
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc----------------------ccCCCcccCCCCCCCCCCCCchHHH
Confidence 459999877799999999999999999998641 2222333333221445778999999
Q ss_pred HHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCC-CCCCCch
Q 045720 217 ASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGL-SQFYDNG 294 (745)
Q Consensus 217 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~-~~~~~~~ 294 (745)
||||+|+... .+.||||+|+|+.+|++.+..+ ....+++++|+||++++++|||+|||... .......
T Consensus 69 AGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~~~~~~ 138 (306)
T 4h6w_A 69 ASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTW 138 (306)
T ss_dssp HHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHH
T ss_pred HHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCCCccHH
Confidence 9999987421 2479999999999999863333 67788999999999999999999999753 2344566
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEe
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVY 374 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 374 (745)
+..++.++.++|+++|+||||+|.....+++..+++|+|||+.
T Consensus 139 ~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~------------------------------------- 181 (306)
T 4h6w_A 139 LEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD------------------------------------- 181 (306)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC-------------------------------------
T ss_pred HHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEec-------------------------------------
Confidence 7888889999999999999999998888889999999999852
Q ss_pred cCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 045720 375 PDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 375 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (306)
T 4h6w_A 182 -------------------------------------------------------------------------------- 181 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcc
Q 045720 455 YINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534 (745)
Q Consensus 455 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
..+.+++||++|+. ..||||+|||++|+++.+.+ .|..++||||
T Consensus 182 ----------------------~~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~~---------~~~~~sGTS~ 225 (306)
T 4h6w_A 182 ----------------------DQGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPNG---------GTIRLSGTSF 225 (306)
T ss_dssp ----------------------TTSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTTS---------CEEEECSHHH
T ss_pred ----------------------CCCCccccccccCC-----cCcceeecCCcCcccccCCC---------ceeccCCCcc
Confidence 12356789999965 47899999999999999874 8999999999
Q ss_pred hhHHHHHHHHHHHhh----CCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 535 ACPHLSGVAALLKSA----HPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 535 AaP~VAG~aALl~q~----~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
|||||||++|||+++ +|.|+|+|||++|++||+++...+ ......||+|+||+.+|++
T Consensus 226 AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 226 ATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD---------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT---------CSCGGGGTTCBCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCCCCcceeecCHHHHHH
Confidence 999999999999864 699999999999999999885432 2244579999999999987
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=439.38 Aligned_cols=267 Identities=20% Similarity=0.135 Sum_probs=218.4
Q ss_pred CCCcccCCCCCC--CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC----CCCCC
Q 045720 136 SSGFWKDSNFGK--GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG----SAIDY 209 (745)
Q Consensus 136 ~~~~~~~g~~G~--Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~----~~~d~ 209 (745)
++.+|+. ++|+ ||+||||||||| +||+|.++ +...++|.++.+. .+.|.
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~d~ 86 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------EFAKFSFTQDGSPFPVKKSEAL 86 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------EEEEEECBTTCCSSCCSSSHHH
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------cccCCcccCCCCCCCCCCCCCC
Confidence 5679988 8999 999999999999 99999764 3344555543211 34567
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC------CCcEEEecc
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED------GVDVLSLSF 283 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~------g~dVIN~Sl 283 (745)
.+|||||||||+|+. | +.||||+|+|+.+|+++ +.+.. ++++||+||+++ +++||||||
T Consensus 87 ~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~-~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~ 151 (347)
T 2iy9_A 87 YIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIP-DGVQD--SWIRAIESIMSNVFLAPGEEKIINISG 151 (347)
T ss_dssp HHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCS-SBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESS
T ss_pred CCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEec-CCCHH--HHHHHHHHHHhhhhcccCCceEEEecc
Confidence 899999999999871 1 37999999999999997 44333 999999999999 999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCC-------CCcccCCCC----------ceEEeccccc--ccceEE
Q 045720 284 GLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN-------HYTLVNDAP----------WMLTVGASTI--DRGITI 344 (745)
Q Consensus 284 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~-------~~~~~~~~p----------~vitVga~~~--~~~~~~ 344 (745)
|..........+..++.++.++|++||+||||+|.. ...+++..+ ++|+|||++. +...
T Consensus 152 G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~-- 229 (347)
T 2iy9_A 152 GQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGET-- 229 (347)
T ss_dssp CBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSC--
T ss_pred ccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCce--
Confidence 986544456778888889999999999999999985 456778888 9999998632 1100
Q ss_pred EEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEee
Q 045720 345 SVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMN 424 (745)
Q Consensus 345 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~ 424 (745)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeC
Q 045720 425 DELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGP 504 (745)
Q Consensus 425 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~AP 504 (745)
....+.++.||++||+ ||||+||
T Consensus 230 --------------------------------------------------~~~~~~~~~fS~~G~~-------~~di~AP 252 (347)
T 2iy9_A 230 --------------------------------------------------PVLHGGGITGSRFGNN-------WVDIAAP 252 (347)
T ss_dssp --------------------------------------------------CCBCCCSSSCBCBCTT-------TCSEEEE
T ss_pred --------------------------------------------------ecccCCCCCCCCCCCC-------CCEEEeC
Confidence 0001245699999984 6799999
Q ss_pred CccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCC
Q 045720 505 GLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPA 584 (745)
Q Consensus 505 G~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~ 584 (745)
|++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...
T Consensus 253 G~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~------------ 311 (347)
T 2iy9_A 253 GQNITFLRPD---------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL------------ 311 (347)
T ss_dssp CSSEEEECTT---------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG------------
T ss_pred CCCeEeecCC---------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC------------
Confidence 9999999986 3799999999999999999999999999999999999999999987543
Q ss_pred CccccCCCccCcCCCCCC
Q 045720 585 DLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 585 ~~~~~G~G~id~~~Al~~ 602 (745)
.+..||+|+||+++|++.
T Consensus 312 ~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 312 VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp TTTSGGGEECCHHHHHHH
T ss_pred CCccccCCEecHHHHHHH
Confidence 235899999999999984
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=411.22 Aligned_cols=236 Identities=30% Similarity=0.434 Sum_probs=204.6
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHH
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHT 216 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThV 216 (745)
..+|..+++|+||+|||||||||++||+|.++ +...++|.+... .+.|..+|||||
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~~-~~~d~~gHGT~v 74 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------SVSGYDFVDNDA-DSSDCNGHGTHV 74 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC-----------------------EEEEEETTTTBS-CCCCSSSHHHHH
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC-----------------------ccccccccCCCC-CCCCCCCcHHHH
Confidence 45899999999999999999999999999863 344567766543 567899999999
Q ss_pred HHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC--CCcEEEeccCCCCCCCCCch
Q 045720 217 ASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED--GVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 217 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~--g~dVIN~SlG~~~~~~~~~~ 294 (745)
||||+|.. .||||+|+|+.+|+++....++.+++++||+|++++ +++|||||||.. ....
T Consensus 75 Agiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~----~~~~ 136 (284)
T 1sh7_A 75 AGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG----QSTA 136 (284)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS----CCHH
T ss_pred HHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC----CCHH
Confidence 99999873 699999999999999833347888999999999984 799999999986 3467
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEE
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV 373 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 373 (745)
+..++.++.++|++||+||||+|.... .+++..+++|+||+++
T Consensus 137 ~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------------------------ 180 (284)
T 1sh7_A 137 LDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT------------------------------------ 180 (284)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC------------------------------------
T ss_pred HHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec------------------------------------
Confidence 788888999999999999999997653 4578899999999852
Q ss_pred ecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 045720 374 YPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIK 453 (745)
Q Consensus 374 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 453 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCc
Q 045720 454 AYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTS 533 (745)
Q Consensus 454 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 533 (745)
..+.++.||++||.. ||+|||++|+++++.+ .|..++|||
T Consensus 181 -----------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~---------~~~~~sGTS 220 (284)
T 1sh7_A 181 -----------------------SSDSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG---------GYKTISGTS 220 (284)
T ss_dssp -----------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTS---------SEEEECSHH
T ss_pred -----------------------CCCCcCcccCCCCcc--------EEEeccCCeEEecCCC---------CEEEccChH
Confidence 123678999999865 9999999999998773 799999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 534 MACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 534 mAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 221 ~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 221 MATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 9999999999999999999999999999999999764
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-49 Score=467.71 Aligned_cols=405 Identities=20% Similarity=0.220 Sum_probs=270.3
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--CCCCCCCChhHHHHhhcccCc
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--SAIDYTGHGTHTASTAAGNFV 225 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--~~~d~~gHGThVAGiiag~~~ 225 (745)
+|+|||||||+|.+|++.... ..|+...+.+. ..+.+....++.++.+. ...|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg~--F~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~- 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETRN--VDDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH- 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCCE--ESSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC-
T ss_pred CEEEEEEeCCCCCCccccccc------ccccccccccc--cccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC-
Confidence 699999999998766654210 01111111000 01222233333333211 23578999999999999985
Q ss_pred CCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHh-----CCCcEEEeccCCCCCCCCCchHHHH
Q 045720 226 HGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIE-----DGVDVLSLSFGLGLSQFYDNGIAKA 298 (745)
Q Consensus 226 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~-----~g~dVIN~SlG~~~~~~~~~~~~~a 298 (745)
++. .+.||||+|+|+.+|+++...+ .+...++.+|.+|++ .|++|||||||........+.+..+
T Consensus 285 N~~--------g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~a 356 (1354)
T 3lxu_X 285 SSR--------DVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGEL 356 (1354)
T ss_dssp SSS--------SSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHH
T ss_pred CCC--------CceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHH
Confidence 221 2489999999999999983223 255678888888887 7999999999997644455677888
Q ss_pred HHHHH-hCCcEEEEecCCCCCCCCc--ccC--CCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEE
Q 045720 299 TFEAI-RRGIFVSIAAGNSGPNHYT--LVN--DAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV 373 (745)
Q Consensus 299 ~~~a~-~~Gv~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 373 (745)
+.++. ++|++||+||||+|.+... +++ ..+++|+|||++........+.
T Consensus 357 I~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys-------------------------- 410 (1354)
T 3lxu_X 357 MNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYA-------------------------- 410 (1354)
T ss_dssp HHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------------
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccc--------------------------
Confidence 88886 8999999999999986543 455 4899999999643321100000
Q ss_pred ecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 045720 374 YPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIK 453 (745)
Q Consensus 374 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 453 (745)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1354)
T 3lxu_X 411 -------------------------------------------------------------------------------- 410 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCc
Q 045720 454 AYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTS 533 (745)
Q Consensus 454 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 533 (745)
......+.+++|||+||+. ++++||||+|||++|.++..... +.|..++|||
T Consensus 411 -------------------~~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-------~~y~~~SGTS 462 (1354)
T 3lxu_X 411 -------------------MREKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-------SKSQLMNGTS 462 (1354)
T ss_dssp --------------------------CCCCCCCCSCCS--SSSCCEEEEEEC----------------------CCCCGG
T ss_pred -------------------cccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-------CceecCCCCC
Confidence 0001224789999999998 78999999999999999865432 4799999999
Q ss_pred chhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCceecCC
Q 045720 534 MACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQ 609 (745)
Q Consensus 534 mAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~ 609 (745)
||||||||++|||++ .+|+|++.+||++|++||++... .+++.||||+||+.+|++..+.++..
T Consensus 463 mAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------~~~~~~G~GlLDa~~AV~~a~~~~~~ 530 (1354)
T 3lxu_X 463 MAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGLLNVEKAFEHLTEHRQS 530 (1354)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT------------SCTTTSSSSBCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC------------CCcccccCCEeCHHHHHHHHHhcCCC
Confidence 999999999999986 79999999999999999998743 24568999999999999999999999
Q ss_pred CCCcccccccCCCC-ccceeEecccccccccCCCCCCccCCCceeeeecCCcCEEEEEEEEecC-------CC-ceeEE-
Q 045720 610 PDDYIPYLCGLNYT-DEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSPQTYHRTVTNVG-------KA-KSFYT- 679 (745)
Q Consensus 610 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~N~g-------~~-~~ty~- 679 (745)
+.+|+.|.|..+.. ...|..- .+ ......+++++|+-+- +. ...|.
T Consensus 531 p~~~v~f~~~v~~~~~rgIylR-------------------~~-----~~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~ 586 (1354)
T 3lxu_X 531 KDNMLRFSVRVGNNADKGIHLR-------------------QG-----VQRNSIDYNVYIEPIFYNDKEADPKDKFNFNV 586 (1354)
T ss_dssp GGGGEEEEEEETTTTBSSEEEC-------------------SS-----CCCSCEEEEEEEEEEESSCSCSSSTTCSCCCC
T ss_pred CccceEEEEEecCCCCCceEEe-------------------cc-----ccCCceEEEEEEeeeecCcccCChhhccceEE
Confidence 99999999998642 2222110 00 0012344444443222 11 11121
Q ss_pred -EEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEc-----CceeEEeeEEEEe
Q 045720 680 -RQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVS-----DKYTVKSPIAISF 744 (745)
Q Consensus 680 -~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~-----~~~~v~~P~~v~~ 744 (745)
+.... ..--|. -|..+.+ .++.++|.|+++++..+. +.+++.|...| -+...|+|+.|.-
T Consensus 587 ~l~L~~-t~~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~~-G~h~~~v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 587 RLNLIA-SQPWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQP-GVHSAVIRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EEEEEE-SSTTEE-ECSCEEC--TTSCEEEEEEECGGGCCS-EEEEEEEEEEESSCTTSCCSEEEEEEEEE
T ss_pred EEEEec-CCCcee-cccceee--cCCCceEEEEECCCCCCC-cceeEEEEEEEcCCcccCceEEeeEEEEe
Confidence 12111 111333 3666766 367899999999998866 78999999875 3789999998864
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-50 Score=431.62 Aligned_cols=290 Identities=27% Similarity=0.311 Sum_probs=220.0
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccc-----cCcccCccccceeecc-----CCCC--
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL-----VGATCNNKLIGVRNFF-----CGKD-- 203 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~-----~~~~~~~kv~g~~~~~-----~~~~-- 203 (745)
+..+|+.+++|+||+||||||||+ +||+|.++-.. .|+-.... +.............+. ...+
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPR 95 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTCGG
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCCCcc
Confidence 466999999999999999999998 99999864221 11110000 0000000000000000 0000
Q ss_pred CCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh----------
Q 045720 204 GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE---------- 273 (745)
Q Consensus 204 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---------- 273 (745)
....|..||||||||||+|...++.. +.||||+|+|+.+|+++ ..++..++++++|+||++
T Consensus 96 ~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~~~~~~~ 166 (340)
T 3lpc_A 96 KERSDSSWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALG-RCGGYDSDISDGLYWAAGGRIAGIPENR 166 (340)
T ss_dssp GSCBCCCCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCB-TTBCCHHHHHHHHHHHHTCCCTTSCCCS
T ss_pred cCCCCCCCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEec-CCCCcHHHHHHHHHHHhccccccccccc
Confidence 03567899999999999998543222 37999999999999998 666888999999999998
Q ss_pred CCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCc
Q 045720 274 DGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQE 352 (745)
Q Consensus 274 ~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 352 (745)
.+++|||||||... .....+..++.++.++|++||+||||+|.... .+++..+++|+|||++
T Consensus 167 ~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 229 (340)
T 3lpc_A 167 NPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT--------------- 229 (340)
T ss_dssp SCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC---------------
T ss_pred CCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC---------------
Confidence 88999999999753 23456777788899999999999999997754 4678899999999852
Q ss_pred eeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccc
Q 045720 353 TYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDST 432 (745)
Q Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~ 432 (745)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeec
Q 045720 433 LIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAW 512 (745)
Q Consensus 433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~ 512 (745)
..+.++.||++|| ||||+|||++|++++
T Consensus 230 --------------------------------------------~~~~~~~~S~~g~--------~~di~ApG~~i~s~~ 257 (340)
T 3lpc_A 230 --------------------------------------------SRGIRASFSNYGV--------DVDLAAPGQDILSTV 257 (340)
T ss_dssp --------------------------------------------TTSSBCTTCCBST--------TCCEEEECSSEEEEE
T ss_pred --------------------------------------------CCCCcCCCCCCCC--------CceEEecCCCeeccc
Confidence 1236789999997 459999999999998
Q ss_pred cCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhh-C---CCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccc
Q 045720 513 KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSA-H---PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYA 588 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 588 (745)
+.... ......|..++|||||||||||++|||+|+ + |.+++++||++|++||+++.. ..+..
T Consensus 258 ~~~~~--~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~------------~~~~~ 323 (340)
T 3lpc_A 258 DSGTR--RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG------------RLDRA 323 (340)
T ss_dssp ESCSS--SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS------------CCSSC
T ss_pred CCCCc--CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC------------CCCCC
Confidence 76532 122246999999999999999999999998 5 999999999999999998742 24568
Q ss_pred cCCCccCcCCCCCC
Q 045720 589 VGAGQVNPSKANDP 602 (745)
Q Consensus 589 ~G~G~id~~~Al~~ 602 (745)
||+|+||+.+||+.
T Consensus 324 ~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 324 LGSGIVDAEAAVNS 337 (340)
T ss_dssp CCSSBCCHHHHHHH
T ss_pred cccceecHHHHHHH
Confidence 99999999999874
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=438.25 Aligned_cols=288 Identities=27% Similarity=0.358 Sum_probs=225.8
Q ss_pred CCccc-CCCCCCCeEEEEEcCCCCC------CCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCC
Q 045720 137 SGFWK-DSNFGKGVIIGVLDTGITP------GHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDY 209 (745)
Q Consensus 137 ~~~~~-~g~~G~Gv~VaVIDtGid~------~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~ 209 (745)
+.+|. .+++|+||+|||||||||+ .||+|.++ +...++|.+.. .+.|.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------i~~~~~~~~~~--~~~d~ 65 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------ITALYALGRTN--NANDT 65 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------EEEEEETTTTT--CCCCS
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------EeeeccccCCC--CCCCC
Confidence 45897 7999999999999999999 79999753 44455665442 56788
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCC---ChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC---PESAVIAGIDAAIEDGVDVLSLSFGLG 286 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~---~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (745)
.||||||||||+|+.. + +.||||+|+|+.+|+++ ..+. ..+++.++|++|+++|++|||||||..
T Consensus 66 ~gHGT~VAgiiag~g~----------~-~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 133 (434)
T 1wmd_A 66 NGHGTHVAGSVLGNGS----------T-NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAA 133 (434)
T ss_dssp SSHHHHHHHHHHCCSS----------S-SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBC
T ss_pred CCcHHHHHHHHHcCCC----------C-ceeeCCCCEEEEEEeec-CCCccccccHHHHHHHHHHHhcCCeEEEecCCCC
Confidence 9999999999998631 1 37999999999999998 4442 456799999999999999999999987
Q ss_pred CCCCCCchHHHHHHHH-HhCCcEEEEecCCCCCCC--CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCC
Q 045720 287 LSQFYDNGIAKATFEA-IRRGIFVSIAAGNSGPNH--YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWT 363 (745)
Q Consensus 287 ~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 363 (745)
....+ +....++.++ .++|++||+||||+|... ..+++..+++|+|||++..+...
T Consensus 134 ~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~-------------------- 192 (434)
T 1wmd_A 134 VNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------------- 192 (434)
T ss_dssp CTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--------------------
T ss_pred cCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc--------------------
Confidence 52222 3445555555 589999999999999764 45678899999999964321000
Q ss_pred CCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEE
Q 045720 364 DIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVR 443 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 443 (745)
| .
T Consensus 193 ----------------------------------~-------------------------------~------------- 194 (434)
T 1wmd_A 193 ----------------------------------G-------------------------------S------------- 194 (434)
T ss_dssp ----------------------------------C-------------------------------G-------------
T ss_pred ----------------------------------C-------------------------------c-------------
Confidence 0 0
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC---CC
Q 045720 444 VSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP---LA 520 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~---~~ 520 (745)
.....+.+++||++||+. ++++||||+|||++|+++++..... ..
T Consensus 195 ------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~~~~ 242 (434)
T 1wmd_A 195 ------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWA 242 (434)
T ss_dssp ------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSE
T ss_pred ------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCccccc
Confidence 001235789999999998 7899999999999999998642110 00
Q ss_pred CcccceeeecCCcchhHHHHHHHHHHHhhCCCC-----CHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccC
Q 045720 521 NRVYTFDIVSGTSMACPHLSGVAALLKSAHPNW-----SHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVN 595 (745)
Q Consensus 521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id 595 (745)
...+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ..++..||||++|
T Consensus 243 ~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-----------~~~~~~~G~G~vd 311 (434)
T 1wmd_A 243 NHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVT 311 (434)
T ss_dssp EEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCC
T ss_pred CCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-----------CCCCccCCcCeEe
Confidence 013579999999999999999999999998865 899999999999987521 3467899999999
Q ss_pred cCCCCCCC
Q 045720 596 PSKANDPG 603 (745)
Q Consensus 596 ~~~Al~~~ 603 (745)
+.+|++..
T Consensus 312 ~~~a~~~~ 319 (434)
T 1wmd_A 312 LDKSLNVA 319 (434)
T ss_dssp HHHHHTCE
T ss_pred HHHhcccc
Confidence 99999754
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=407.39 Aligned_cols=237 Identities=33% Similarity=0.432 Sum_probs=203.8
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHH
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHT 216 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThV 216 (745)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++.. .+.|..+|||||
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------~~~~~d~~~~~~-~~~d~~gHGT~v 76 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------ASSGYDFIDNDY-DATDCNGHGTHV 76 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTTTBS-CCCCSSSHHHHH
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc-----------------------cccCeecCCCCC-CCCCCCCcHHHH
Confidence 45899999999999999999999999999764 334566766543 567899999999
Q ss_pred HHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh--CCCcEEEeccCCCCCCCCCch
Q 045720 217 ASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE--DGVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 217 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~--~g~dVIN~SlG~~~~~~~~~~ 294 (745)
||||+|.. .||||+|+|+.+|++++...++.++++++|+|+++ .+++|||||||... ...
T Consensus 77 Agiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~----~~~ 138 (278)
T 2b6n_A 77 AGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA----SQA 138 (278)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----CHH
T ss_pred HHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc----CHH
Confidence 99999872 69999999999999983334788899999999998 58999999999864 456
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEE
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV 373 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 373 (745)
+..++.++.++|++||+||||+|.... .+++..+++|+||+++
T Consensus 139 ~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------------------------ 182 (278)
T 2b6n_A 139 TDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT------------------------------------ 182 (278)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------------------------
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC------------------------------------
Confidence 777888899999999999999998754 3578899999999852
Q ss_pred ecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 045720 374 YPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIK 453 (745)
Q Consensus 374 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 453 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCc
Q 045720 454 AYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTS 533 (745)
Q Consensus 454 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 533 (745)
..+.++.||++||.. ||+|||++|.++++... +.|..++|||
T Consensus 183 -----------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~-------~~~~~~sGTS 224 (278)
T 2b6n_A 183 -----------------------SNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN-------SATNTISGTS 224 (278)
T ss_dssp -----------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTST-------TCEEEECSHH
T ss_pred -----------------------CCCCcCCcCCCCCCC--------eEEeCCCCeECcccCCC-------CCEEEeCcHH
Confidence 123678899999854 99999999999987643 3799999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccc
Q 045720 534 MACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 534 mAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~ 569 (745)
||||||||++|||+|++|+|++.|||++|++||++.
T Consensus 225 ~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 225 MASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 999999999999999999999999999999999875
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=406.26 Aligned_cols=237 Identities=33% Similarity=0.456 Sum_probs=205.9
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
...+|..+++|+||+|||||||||++||+|.++ +...++|... ...|..|||||
T Consensus 20 ~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~---~~~d~~gHGT~ 73 (276)
T 4dzt_A 20 LSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-----------------------ARVGYDALGG---NGQDCNGHGTH 73 (276)
T ss_dssp CCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTSS---CSCCSSSHHHH
T ss_pred cccceecCCCCCCcEEEEEccCCCCCChhHccC-----------------------eeccccCCCC---CCCCCCCCHHH
Confidence 356899999999999999999999999999764 3445566553 56788999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC--CCcEEEeccCCCCCCCCCc
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED--GVDVLSLSFGLGLSQFYDN 293 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~--g~dVIN~SlG~~~~~~~~~ 293 (745)
|||||+|.. .||||+|+|+.+|+++.......++++++++|++++ +++|||||||... ..
T Consensus 74 vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~----~~ 135 (276)
T 4dzt_A 74 VAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV----ST 135 (276)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----CH
T ss_pred HHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC----CH
Confidence 999999873 699999999999999844447889999999999987 8999999999753 46
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCCCCCcc-cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeE
Q 045720 294 GIAKATFEAIRRGIFVSIAAGNSGPNHYTL-VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPL 372 (745)
Q Consensus 294 ~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 372 (745)
.+..++.++.++|+++|+||||+|...... ++..+++|+||+++
T Consensus 136 ~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------------------------- 180 (276)
T 4dzt_A 136 ALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT----------------------------------- 180 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------------------------
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC-----------------------------------
Confidence 778888899999999999999999876544 78889999999852
Q ss_pred EecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 045720 373 VYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESI 452 (745)
Q Consensus 373 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCC
Q 045720 453 KAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGT 532 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
..+.++.||++||.. ||+|||++|.++++... ..|..++||
T Consensus 181 ------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~-------~~~~~~sGT 221 (276)
T 4dzt_A 181 ------------------------SSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD-------TATQTLNGT 221 (276)
T ss_dssp ------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-------SCEEEECSH
T ss_pred ------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-------CceEEeeEH
Confidence 123678999999976 99999999999988754 379999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 533 SMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
|||||+|||++|||+|++|+++++|||++|++||++..
T Consensus 222 S~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 222 SMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 99999999999999999999999999999999999874
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=405.78 Aligned_cols=240 Identities=34% Similarity=0.485 Sum_probs=204.4
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
.|+. .+|+||+|+|||||||++||+|.++ +...++|.+ .+.|..+|||||||
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~-----------------------~~~~~~~~~----~~~d~~gHGT~vAg 75 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYYY----SSRDGNGHGTHCAG 75 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESSS----CSSCSSSHHHHHHH
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc-----------------------cccccCCCC----CCCCCCCCHHHHHH
Confidence 4543 7899999999999999999999864 334556662 46789999999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCC-------cEEEeccCCCCCCCC
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV-------DVLSLSFGLGLSQFY 291 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~-------dVIN~SlG~~~~~~~ 291 (745)
||+|+. .||||+|+|+.+|+++....++.++++++|+|++++++ +|||||||.. .
T Consensus 76 iia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~----~ 137 (279)
T 2pwa_A 76 TVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----Y 137 (279)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----C
T ss_pred HHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC----C
Confidence 999872 69999999999999983333788999999999999887 9999999975 3
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCce
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRL 370 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 370 (745)
.+.+..++.++.++|++||+||||+|.+.. .+|+..+++|+||+++
T Consensus 138 ~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------------------------- 184 (279)
T 2pwa_A 138 SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD--------------------------------- 184 (279)
T ss_dssp CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------------------------
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec---------------------------------
Confidence 467788888999999999999999998754 4578899999999852
Q ss_pred eEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 045720 371 PLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 371 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeec
Q 045720 451 SIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
..+.++.||+|||.. ||+|||++|+++++.+ .|..++
T Consensus 185 --------------------------~~~~~~~~S~~G~~~--------di~APG~~i~s~~~~~---------~~~~~s 221 (279)
T 2pwa_A 185 --------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG---------STRSIS 221 (279)
T ss_dssp --------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETTT---------EEEEEC
T ss_pred --------------------------CCCCcCCcCCCCCcc--------eEEEecCCeEEeecCC---------CEEEcC
Confidence 123678999999865 9999999999999873 799999
Q ss_pred CCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 531 GTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
|||||||||||++|||+|+ |++++.|||++|++||++.. ...+|+|..|+
T Consensus 222 GTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~---------------~~~~~~g~~n~ 271 (279)
T 2pwa_A 222 GTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGD---------------LSNIPFGTVNL 271 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESC---------------CBSCCTTSCCE
T ss_pred ChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccc---------------cCCCCCCCccE
Confidence 9999999999999999999 99999999999999999762 12467787776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=430.42 Aligned_cols=287 Identities=17% Similarity=0.183 Sum_probs=219.1
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-----CCCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-----SAIDYT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-----~~~d~~ 210 (745)
+..+|+.+++|+||+|||||||||++||+|.++-. ....++|.+.... .+.|..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~---------------------~~~~~d~~~~~~~p~~~~~~~d~~ 85 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------PGASFDVNDQDPDPQPRYTQMNDN 85 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------GGGCEETTTTBSCCCCCCCTTCTT
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC---------------------ccCcccccCCCCCCCCccCCCCCC
Confidence 46699999999999999999999999999986410 0123455443221 235789
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
+|||||||||+|...++. + +.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||.....
T Consensus 86 gHGT~vAGiiaa~~~n~~-------g-~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~ 153 (471)
T 1p8j_A 86 RHGTRCAGEVAAVANNGV-------C-GVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDG 153 (471)
T ss_dssp CHHHHHHHHHHCCSSSSS-------S-CCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred CcHHHHHHHHHeeccCCC-------C-CEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEeccCcCCCC
Confidence 999999999999753322 1 37999999999999997 346789999999999 8999999999986421
Q ss_pred ----CCCchHHHHHHHHH-----hCCcEEEEecCCCCCCCCc----ccCCCCceEEecccccccceEEEEEcCCCceeee
Q 045720 290 ----FYDNGIAKATFEAI-----RRGIFVSIAAGNSGPNHYT----LVNDAPWMLTVGASTIDRGITISVRLGNQETYDG 356 (745)
Q Consensus 290 ----~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 356 (745)
.....+..++.++. .+|++||+||||+|..... ....++++|+|||++
T Consensus 154 ~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~------------------- 214 (471)
T 1p8j_A 154 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------------------- 214 (471)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------------------
T ss_pred CcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc-------------------
Confidence 12233455555554 3799999999999876321 224568999999852
Q ss_pred eecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccc
Q 045720 357 EALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQR 436 (745)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 436 (745)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCC
Q 045720 437 NSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTV 516 (745)
Q Consensus 437 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~ 516 (745)
..+.++.||++||.. ....+|...+||.+|+++....
T Consensus 215 ----------------------------------------~~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~~~- 251 (471)
T 1p8j_A 215 ----------------------------------------QFGNVPWYSEACSST--LATTYSSGNQNEKQIVTTDLRQ- 251 (471)
T ss_dssp ----------------------------------------TTSCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEETTT-
T ss_pred ----------------------------------------CCCCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeCCC-
Confidence 123678999999987 3345666667778999998753
Q ss_pred CCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 517 DPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 517 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
..|..++|||||||||||++|||+|++|+|++++||++|++||++.......+.........+..||||+||+
T Consensus 252 -------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~vda 324 (471)
T 1p8j_A 252 -------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDA 324 (471)
T ss_dssp -------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCH
T ss_pred -------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCCEEEcH
Confidence 4799999999999999999999999999999999999999999988654333322222233567899999999
Q ss_pred CCCCCCCc
Q 045720 597 SKANDPGL 604 (745)
Q Consensus 597 ~~Al~~~l 604 (745)
++|++...
T Consensus 325 ~~Av~~a~ 332 (471)
T 1p8j_A 325 GAMVALAQ 332 (471)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHhh
Confidence 99998543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=425.92 Aligned_cols=281 Identities=19% Similarity=0.199 Sum_probs=217.9
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--CCCCCCCCh
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--SAIDYTGHG 213 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--~~~d~~gHG 213 (745)
+..+|..+++|+||+|||||||||++||+|.++- ...+.++|.++... +..|+.+||
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~---------------------~~~~~~d~~~~~~~~~p~~d~~gHG 101 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF---------------------CAEGSWDFNDNTNLPKPRLSDDYHG 101 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB---------------------CGGGCEETTTTBSCCCCCSTTTTHH
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc---------------------cccCcccCCCCCCCCCCCCCCCChH
Confidence 4569999999999999999999999999998641 11134566654321 235789999
Q ss_pred hHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC----
Q 045720 214 THTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ---- 289 (745)
Q Consensus 214 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---- 289 (745)
|||||||+|...++. + +.||||+|+|+.+|+++ .. ++..+++++|+|+++++ +|||||||.....
T Consensus 102 T~vAGiiaa~~~n~~-------~-~~GvAp~a~i~~~rv~~-~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~ 170 (503)
T 2id4_A 102 TRCAGEIAAKKGNNF-------C-GVGVGYNAKISGIRILS-GD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQ 170 (503)
T ss_dssp HHHHHHHHCCSSSSS-------S-CCCTTTTSEEEEEECTT-SC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCB
T ss_pred HHHHHHHHhccCCCC-------C-cEEECCCCEEEEEEeeC-CC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCcccc
Confidence 999999999753322 2 37999999999999997 32 67888999999999988 9999999986421
Q ss_pred CCCchHHHHHHHHH-----hCCcEEEEecCCCCCCC--Cccc--CCCCceEEecccccccceEEEEEcCCCceeeeeecc
Q 045720 290 FYDNGIAKATFEAI-----RRGIFVSIAAGNSGPNH--YTLV--NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALW 360 (745)
Q Consensus 290 ~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~--~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 360 (745)
.....+..++.++. .+|++||+||||+|... +.++ ...+++|+|||++
T Consensus 171 ~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~----------------------- 227 (503)
T 2id4_A 171 GPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID----------------------- 227 (503)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----------------------
T ss_pred CchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC-----------------------
Confidence 12344666666665 47999999999998753 3333 3567899999852
Q ss_pred cCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccc
Q 045720 361 QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 440 (745)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeee----CCccEEeeccCCC
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIG----PGLNIIAAWKTTV 516 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~A----PG~~I~sa~~~~~ 516 (745)
..+.++.||++||.. |++| ||..|+++....
T Consensus 228 ------------------------------------~~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~~~- 262 (503)
T 2id4_A 228 ------------------------------------HKDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDING- 262 (503)
T ss_dssp ------------------------------------TTSCCCTTCCCCTTE--------EEEEECSBTTBCEEEECSTT-
T ss_pred ------------------------------------CCCCcCCcCCCCCcc--------eEeecCCCCCCceEeecCCC-
Confidence 123668999999987 8887 899999995443
Q ss_pred CCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCC-CCcccCCCCCCCCccccCCCccC
Q 045720 517 DPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLE-GKPILDCTRLPADLYAVGAGQVN 595 (745)
Q Consensus 517 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~-~~~~~~~~~~~~~~~~~G~G~id 595 (745)
..|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...+.........+..||||+||
T Consensus 263 -------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vd 335 (503)
T 2id4_A 263 -------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKID 335 (503)
T ss_dssp -------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCC
T ss_pred -------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcccCCcEec
Confidence 4899999999999999999999999999999999999999999988654 21122221223345689999999
Q ss_pred cCCCCCCC
Q 045720 596 PSKANDPG 603 (745)
Q Consensus 596 ~~~Al~~~ 603 (745)
+++|++..
T Consensus 336 a~~Av~~a 343 (503)
T 2id4_A 336 AHKLIEMS 343 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999843
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=417.50 Aligned_cols=268 Identities=25% Similarity=0.277 Sum_probs=201.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC-----CCCCCCCCCh
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD-----GSAIDYTGHG 213 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~-----~~~~d~~gHG 213 (745)
.|..+++|+||+|+|||||||++||+|.++- ....+++..+.+ ....|..|||
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~----------------------~~~~~~~v~~~dg~~f~~~~~D~~GHG 75 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV----------------------MVTDFENVPEEDGTRFHRQASKCDSHG 75 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE----------------------EEEEEECCCCCC-------CTTTTHHH
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc----------------------cccCcccccCCCCccccCCCCCCCChH
Confidence 7888999999999999999999999998641 001111111100 1356889999
Q ss_pred hHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhC------CCcEEEeccCCC
Q 045720 214 THTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIED------GVDVLSLSFGLG 286 (745)
Q Consensus 214 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~------g~dVIN~SlG~~ 286 (745)
|||||||+|+. .||||+|+|+.+|+++ ..+ ++.++++++|+|+++. +++|||||||+.
T Consensus 76 ThVAGIIag~~--------------~GVAP~A~L~~vkVl~-~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~ 140 (546)
T 2qtw_B 76 THLAGVVSGRD--------------AGVAKGASMRSLRVLN-CQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG 140 (546)
T ss_dssp HHHHHHHHCTT--------------TCSSTTCEEEEEECSC-TTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE
T ss_pred HHHHHHHhccC--------------CCcCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC
Confidence 99999999873 6999999999999998 544 7788999999999984 899999999975
Q ss_pred CCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCC
Q 045720 287 LSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDI 365 (745)
Q Consensus 287 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 365 (745)
+...+..++.++.++|++||+||||+|.+.. .+|+..+++|+|||++.+.
T Consensus 141 ----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g------------------------- 191 (546)
T 2qtw_B 141 ----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD------------------------- 191 (546)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS-------------------------
T ss_pred ----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC-------------------------
Confidence 3467788888999999999999999998753 3478899999999963221
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEec
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeee----cccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCC
Q 045720 446 HAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVV----AFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLAN 521 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a----~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~ 521 (745)
.++ .||++||. |||+|||++|+++++...
T Consensus 192 ----------------------------------~~a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~----- 224 (546)
T 2qtw_B 192 ----------------------------------QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS----- 224 (546)
T ss_dssp ----------------------------------CBCEETTEECCBSTT--------CCEEEECSSEEEECTTST-----
T ss_pred ----------------------------------CcccccCCcCCCCCc--------ceEEecCccEEeeccCCC-----
Confidence 112 28999974 599999999999998753
Q ss_pred cccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCccc------CCC---CCCCCccccCCC
Q 045720 522 RVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPIL------DCT---RLPADLYAVGAG 592 (745)
Q Consensus 522 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~------~~~---~~~~~~~~~G~G 592 (745)
..|..++|||||||||||++|||+|++|+|++.|||++|++||.+.......+. .+. ..+.....+|+|
T Consensus 225 --~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~ 302 (546)
T 2qtw_B 225 --TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQ 302 (546)
T ss_dssp --TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CC
T ss_pred --CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCC
Confidence 379999999999999999999999999999999999999999986532221110 000 111234567777
Q ss_pred c--cCcCCCCC
Q 045720 593 Q--VNPSKAND 601 (745)
Q Consensus 593 ~--id~~~Al~ 601 (745)
+ .++..+..
T Consensus 303 l~~~~~w~a~s 313 (546)
T 2qtw_B 303 LFCRTVWSAHS 313 (546)
T ss_dssp CEEEEEECCCC
T ss_pred cchhchhccCC
Confidence 7 66666654
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-46 Score=389.28 Aligned_cols=229 Identities=32% Similarity=0.441 Sum_probs=197.8
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
+|+.. +|+||+|||||||||++||+|.++ +...++|..+ ..|..||||||||
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~----~~d~~gHGT~vAg 76 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR-----------------------AKQIKSYAST----ARDGHGHGTHCAG 76 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEECSSS----SSCSSSHHHHHHH
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc-----------------------cccccCCCCC----CCCCCCcHHHHHH
Confidence 56666 999999999999999999999864 3445556543 3388999999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCC-------CcEEEeccCCCCCCCC
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDG-------VDVLSLSFGLGLSQFY 291 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-------~dVIN~SlG~~~~~~~ 291 (745)
||+|+. .||||+|+|+.+|+++....++.++++++++|+++++ ++|||||||.. +
T Consensus 77 ii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~----~ 138 (279)
T 3f7m_A 77 TIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG----Y 138 (279)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----C
T ss_pred HHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC----c
Confidence 999872 6999999999999998444478899999999999976 89999999975 4
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCCcc-cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCce
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL-VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRL 370 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 370 (745)
.+.+..++.++.++|++||+||||+|...... ++..+++|+|||++
T Consensus 139 ~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------------------------- 185 (279)
T 3f7m_A 139 SAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD--------------------------------- 185 (279)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------------------------
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC---------------------------------
Confidence 56788888899999999999999999875444 78889999999852
Q ss_pred eEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 045720 371 PLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 371 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeec
Q 045720 451 SIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
..+.++.||++||.. ||+|||++|+++++. +.|..++
T Consensus 186 --------------------------~~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~---------~~~~~~s 222 (279)
T 3f7m_A 186 --------------------------SNDVRSTFSNYGRVV--------DIFAPGTSITSTWIG---------GRTNTIS 222 (279)
T ss_dssp --------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECGG---------GCEEEEC
T ss_pred --------------------------CCCCCCCCCCCCCCC--------eEEECCCCeEeecCC---------CCEEEee
Confidence 123678999999865 999999999999887 3789999
Q ss_pred CCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 531 GTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
|||||||+|||++|||+|++|+ ++++||++|++||++..
T Consensus 223 GTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 223 GTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 9999999999999999999999 99999999999999763
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=419.43 Aligned_cols=289 Identities=23% Similarity=0.246 Sum_probs=200.9
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--CCCCCCCCh
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--SAIDYTGHG 213 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--~~~d~~gHG 213 (745)
+..+|.++++|+||+|||||||||++||||.++- ..+.++|.++.+. +..|+++||
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~----------------------~~~~~~~~~~~~dp~p~~~~~gHG 116 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV----------------------RPGSKNVVTGSDDPTPTDPDTAHG 116 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB----------------------CSCCBCTTTSSSCCCCCSTTCCHH
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc----------------------ccCcceeecCCCCCCCCCCCCChH
Confidence 4568999999999999999999999999998641 1223444444321 234678999
Q ss_pred hHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHH-HHHHhCCCcEEEeccCCCC-CCCC
Q 045720 214 THTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGI-DAAIEDGVDVLSLSFGLGL-SQFY 291 (745)
Q Consensus 214 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai-~~a~~~g~dVIN~SlG~~~-~~~~ 291 (745)
|||||||||.. ++.| +.||||+|+|+.+|+++....+..++++.++ +++..++++|||||||... ....
T Consensus 117 ThVAGiIAa~~--------n~~g-~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~~~ 187 (600)
T 3hjr_A 117 TSVSGIIAAVD--------NAIG-TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDPRS 187 (600)
T ss_dssp HHHHHHHHCCS--------SSSS-CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSCCC
T ss_pred HHHHHHHhEeC--------CCCC-cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCCcc
Confidence 99999999863 2222 3799999999999999844446777877766 6778889999999999753 2222
Q ss_pred Cch-----HHHHHHH--HHhCCcEEEEecCCCCCCCCcc----------------------cCCCCceEEecccccccce
Q 045720 292 DNG-----IAKATFE--AIRRGIFVSIAAGNSGPNHYTL----------------------VNDAPWMLTVGASTIDRGI 342 (745)
Q Consensus 292 ~~~-----~~~a~~~--a~~~Gv~vV~AAGN~g~~~~~~----------------------~~~~p~vitVga~~~~~~~ 342 (745)
.+. +..++.. ...+|+++|+||||.+...... +...+++|+|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~~IsVgA------- 260 (600)
T 3hjr_A 188 ANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSA------- 260 (600)
T ss_dssp SCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSSEEEEEE-------
T ss_pred CCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCcceEEee-------
Confidence 222 2222222 2268999999999976431100 011112222222
Q ss_pred EEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEE
Q 045720 343 TISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL 422 (745)
Q Consensus 343 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~ 422 (745)
T Consensus 261 -------------------------------------------------------------------------------- 260 (600)
T 3hjr_A 261 -------------------------------------------------------------------------------- 260 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceee
Q 045720 423 MNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502 (745)
Q Consensus 423 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~ 502 (745)
....+.++.||++|+.. +++
T Consensus 261 ----------------------------------------------------~~~~g~~a~yS~~G~~v--------~~~ 280 (600)
T 3hjr_A 261 ----------------------------------------------------LNADGVRSSYSSVGSNI--------FLS 280 (600)
T ss_dssp ----------------------------------------------------ECTTSSBCTTCCBCTTC--------CEE
T ss_pred ----------------------------------------------------ecCCCCEeecccCCcce--------eec
Confidence 13345788999999987 888
Q ss_pred eCCccE--------EeeccCCCCC-----------------CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHH
Q 045720 503 GPGLNI--------IAAWKTTVDP-----------------LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAA 557 (745)
Q Consensus 503 APG~~I--------~sa~~~~~~~-----------------~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 557 (745)
|||.++ .+..++.... .......|..++|||||||||||++|||+|+||+|+++|
T Consensus 281 apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~ 360 (600)
T 3hjr_A 281 ATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRD 360 (600)
T ss_dssp EECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred cCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHH
Confidence 988752 2222221100 122335688999999999999999999999999999999
Q ss_pred HHHHhhcccccccCCCCccc--------------------CCCCCCCCccccCCCccCcCCCCCC
Q 045720 558 IKSAMMTTADTVNLEGKPIL--------------------DCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 558 vk~~L~~TA~~~~~~~~~~~--------------------~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
||++|++||++++....|+. .+.........||+|+||+.+|++.
T Consensus 361 v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~ 425 (600)
T 3hjr_A 361 LRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL 425 (600)
T ss_dssp HHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHH
Confidence 99999999999987765522 1111222345799999999999874
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-25 Score=249.66 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=78.4
Q ss_pred eeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh---CCCcEEEeccCCCCCCC---CCchHHHHHHHHHhCCcEEEE
Q 045720 238 AVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE---DGVDVLSLSFGLGLSQF---YDNGIAKATFEAIRRGIFVSI 311 (745)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~Gv~vV~ 311 (745)
+.||||+|+|+.|++.+ ..++++++|+||++ ++++|||||||...... +...+..++.+|..+||+||+
T Consensus 274 ~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~ 348 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 348 (552)
T ss_dssp HHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 47999999999999753 45789999999998 78999999999864221 234566777788899999999
Q ss_pred ecCCCCCCC--------CcccCCCCceEEeccccc
Q 045720 312 AAGNSGPNH--------YTLVNDAPWMLTVGASTI 338 (745)
Q Consensus 312 AAGN~g~~~--------~~~~~~~p~vitVga~~~ 338 (745)
||||+|... ..+++.+|+|++||+++.
T Consensus 349 AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 349 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred ecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999999643 456789999999999753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=217.28 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=80.8
Q ss_pred eeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCC----CCCCchHHHHHHHHHhCCcEEEEec
Q 045720 239 VGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLS----QFYDNGIAKATFEAIRRGIFVSIAA 313 (745)
Q Consensus 239 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~----~~~~~~~~~a~~~a~~~Gv~vV~AA 313 (745)
..+||+++++.|++.+ ...++.++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~-~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMAD-QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEEC-TTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCC-CCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 4578999999999987 545677899999999998 899999999997531 1223467777778889999999999
Q ss_pred CCCCCCCC-------------cccCCCCceEEeccccc
Q 045720 314 GNSGPNHY-------------TLVNDAPWMLTVGASTI 338 (745)
Q Consensus 314 GN~g~~~~-------------~~~~~~p~vitVga~~~ 338 (745)
||+|...+ .+++.+|+|++||+++.
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 99997542 45688999999999754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=127.23 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=62.6
Q ss_pred eecCCceEEEEEeeCCCCCCChHHHHHHHHHHH--hCCCcEEEeccCCCCCC---CCCchHHHHHHHHHhCCcEEEEecC
Q 045720 240 GMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI--EDGVDVLSLSFGLGLSQ---FYDNGIAKATFEAIRRGIFVSIAAG 314 (745)
Q Consensus 240 GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~---~~~~~~~~a~~~a~~~Gv~vV~AAG 314 (745)
+++++..++.|-... .....+.++..+++.. .+.++|||+|||..... .+.+.+...+.++..+||.|++|+|
T Consensus 263 a~~~~i~~~~~~~~g--~~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 263 SAGANISTWVYSSPG--RHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHSTTSEEEEECCCS--CCTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred ccCCCceEEEEecCC--cccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 445555555443221 1112233444444433 24589999999986422 2334556666788899999999999
Q ss_pred CCCCCC----------CcccCCCCceEEeccccc
Q 045720 315 NSGPNH----------YTLVNDAPWMLTVGASTI 338 (745)
Q Consensus 315 N~g~~~----------~~~~~~~p~vitVga~~~ 338 (745)
|+|... ..+++.+|+|++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999642 256789999999999754
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.89 E-value=5.1e-09 Score=87.09 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEcc
Q 045720 39 GLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVEN 118 (745)
Q Consensus 39 ~~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~ 118 (745)
.+++|||+||++... .....+++++ .+.++.++|.+ |+||+++++++++++|+++|+|++||+|+
T Consensus 7 i~~~YIV~~k~~~~~--~~~~~~~~~~------------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~ 71 (80)
T 3cnq_P 7 GEKKYIVGFKQGFKS--CAKKEDVISE------------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDK 71 (80)
T ss_dssp -CCEEEEEECTTCCS--HHHHHHHHHT------------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECC
T ss_pred CCCCEEEEECCCCCh--HHHHHHHHHH------------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCc
Confidence 478999999988622 2222333332 25689999998 99999999999999999999999999999
Q ss_pred eecccccC
Q 045720 119 TLHLHTTH 126 (745)
Q Consensus 119 ~~~~~~~~ 126 (745)
.++++++.
T Consensus 72 ~v~~~tt~ 79 (80)
T 3cnq_P 72 LYRALSAT 79 (80)
T ss_dssp EEEECCC-
T ss_pred EEEEeeec
Confidence 99887654
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-09 Score=93.06 Aligned_cols=74 Identities=7% Similarity=0.157 Sum_probs=61.6
Q ss_pred CCceEEEEeCCCC----CCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEE
Q 045720 39 GLQTYIIYVQKPE----QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISA 114 (745)
Q Consensus 39 ~~~~yIV~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V 114 (745)
.+++|||+|+++. ...+..|+.+++.+. ..+.++.++|.+.|+||+++++++++++|+++|+|.+|
T Consensus 36 ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~----------~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~V 105 (114)
T 2w2n_P 36 LPGTYVVVLKEETHLSQSERTARRLQAQAARR----------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105 (114)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT----------TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHHHHhhhc----------ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEE
Confidence 4789999999876 234566777766542 34678999999999999999999999999999999999
Q ss_pred EEcceecc
Q 045720 115 RVENTLHL 122 (745)
Q Consensus 115 ~~~~~~~~ 122 (745)
|+|+.++.
T Consensus 106 E~D~~v~~ 113 (114)
T 2w2n_P 106 EEDSSVFA 113 (114)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99998764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-08 Score=87.77 Aligned_cols=74 Identities=7% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCceEEEEeCCCCCCC----hHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEE
Q 045720 39 GLQTYIIYVQKPEQGD----LDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISA 114 (745)
Q Consensus 39 ~~~~yIV~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V 114 (745)
.+++|||+||++.... +..++.+++++. ..+.++.++|++.|+||+++++++++++|+++|+|.+|
T Consensus 46 Ip~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r----------~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~V 115 (124)
T 2qtw_A 46 LPGTYVVVLKEETHLSQSERTARRLQAQAARR----------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115 (124)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT----------TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHhhc----------ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEE
Confidence 4799999999887221 112222222211 24678999999999999999999999999999999999
Q ss_pred EEcceecc
Q 045720 115 RVENTLHL 122 (745)
Q Consensus 115 ~~~~~~~~ 122 (745)
|+++.++.
T Consensus 116 E~D~~v~a 123 (124)
T 2qtw_A 116 EEDSSVFA 123 (124)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99988754
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=77.23 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred ceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEec-ceeeEEEEEeCHHHHHHhhcC--CCeEEEEEc
Q 045720 41 QTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYK-NVISGFAARLTAEEVKAMETK--KGFISARVE 117 (745)
Q Consensus 41 ~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~-~~~~g~s~~~~~~~i~~L~~~--p~V~~V~~~ 117 (745)
+.|||.||++...+......+.++.. +.++.+.|. ..|+||+++++++.+++|+++ |.|.+||+|
T Consensus 3 ~sYIV~lk~~~~~~~~~~~~~~~~~~------------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKIRETKDEVIAE------------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHH------------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHhh------------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 78999999886322222233333333 457889993 789999999999999999999 899999999
Q ss_pred ceecc
Q 045720 118 NTLHL 122 (745)
Q Consensus 118 ~~~~~ 122 (745)
+.++.
T Consensus 71 ~~v~~ 75 (76)
T 1v5i_B 71 HVAHA 75 (76)
T ss_dssp CEEEC
T ss_pred cEEeC
Confidence 98753
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.6e-06 Score=78.23 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=68.1
Q ss_pred CcCCCCCCCCCCCc-------ccceEEEEecCC-c-----hhhhhhcCceEEEEeecCCCCccc--c--ccccccceEEe
Q 045720 382 TTTFCSPETLKSVD-------VKGKVVLCQRGA-S-----GDDVLNAGGAAMILMNDELFGDST--L--IQRNSLPNVRV 444 (745)
Q Consensus 382 ~~~~c~~~~~~~~~-------~~gkivl~~~~~-~-----~~~~~~~ga~~~i~~~~~~~~~~~--~--~~~~~~p~~~i 444 (745)
....|.+....... .+|||+|++||. | +.+++.+||.++|++|+...+... . .+...||++.|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 35789876653322 478999999999 9 889999999999999985322211 1 12347999999
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEecc
Q 045720 445 SHAVSESIKAYINSTSSPTAALVMKG 470 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
+..+|+.|++++.++...+++|.+..
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999887777776543
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.57 E-value=6.9e-05 Score=59.07 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEccee
Q 045720 41 QTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENTL 120 (745)
Q Consensus 41 ~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~~~ 120 (745)
.+|||.|+++. . ..+.++ ..+.++.++|. .++++++.++++.++.|+++|+|++||+|...
T Consensus 2 ~~~IV~f~~~~--~----~~~~i~------------~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v 62 (65)
T 2z30_B 2 IRVIVSVDKAK--F----NPHEVL------------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA 62 (65)
T ss_dssp EEEEEEECGGG--C----CGGGGG------------GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred eeEEEEEcCcc--h----hHHHHH------------HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence 48999998642 1 112222 44889999998 69999999999999999999999999999876
Q ss_pred c
Q 045720 121 H 121 (745)
Q Consensus 121 ~ 121 (745)
+
T Consensus 63 ~ 63 (65)
T 2z30_B 63 V 63 (65)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=51.98 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=57.7
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE-cCceeEE
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV-SDKYTVK 737 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~-~~~~~v~ 737 (745)
+...+.+++|+|.|+.+..|+..... -.+++|.+.++.+ |+++.++|+|.+... +.+++.|.+. ++...+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L~p-g~~~~i~V~F~P~~~---g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTLNV-GESMQLEVEFEPQSV---GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEECT-TCEEEEEEEECCSSS---BCCCCBCEEEESSSCEEC
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEECC-CCEEEEEEEEEcCCC---ccEEEEEEEEECCCCEEE
Confidence 44788889999999999999877643 4677899999998 999999999998865 4566766665 5555555
Q ss_pred eeE
Q 045720 738 SPI 740 (745)
Q Consensus 738 ~P~ 740 (745)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.26 Score=53.73 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccc---ccccccceEEechhhHHHHHHHHH
Q 045720 392 KSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTL---IQRNSLPNVRVSHAVSESIKAYIN 457 (745)
Q Consensus 392 ~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
...+++|||+|+.|+.| ..+++.+||.++|++++........ .....+|.+.++.++++.|.+++.
T Consensus 109 ~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 109 AGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 34589999999999998 7788899999999998853221111 134579999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.16 Score=55.88 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=66.7
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCch------------------hhhhhcCceEEEEeecCC
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASG------------------DDVLNAGGAAMILMNDEL 427 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~------------------~~~~~~ga~~~i~~~~~~ 427 (745)
....-++++..+. ..|.. ..+.+++|||||+.|+.|. .++..+||+++|++++..
T Consensus 104 ~~vta~lV~v~~~-----~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~ 176 (444)
T 3iib_A 104 QGLSATIVRFDTL-----QDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGT 176 (444)
T ss_dssp TCEEEEEEEESSH-----HHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCS
T ss_pred CCeEEEEEecCCH-----HHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCC
Confidence 3456777776421 22322 2356899999999998761 247789999999998643
Q ss_pred CCc-------cccc-cccccceEEechhhHHHHHHHHHcCCCCeEEEEecc
Q 045720 428 FGD-------STLI-QRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKG 470 (745)
Q Consensus 428 ~~~-------~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
... .... ....+|++.|+.++++.|.+.+..+...++++....
T Consensus 177 ~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 177 DHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 221 1111 235799999999999999999987766666655433
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.6 Score=42.36 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=63.4
Q ss_pred cCEEEEEEEEecCCCceeEEEEEeCC----CCeEEEEEcCeEEeccCCcEEEEEEEEEecCC------CCCCeEEEEEEE
Q 045720 660 SPQTYHRTVTNVGKAKSFYTRQMVAP----EGVEITVQPHNISFAAKNQKVTYSVTFTRTGN------TNASSAQAYLSW 729 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~~ty~~~~~~p----~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~------~~~~~~~G~~~~ 729 (745)
...+-++||+|.|.-+.+|++..... ..--++++|..-++.| |++.+++|++..... ....-++--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~P-ge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCC-CCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 36777899999999999999985321 1224677899999999 999999999986542 111344666777
Q ss_pred E-cCceeEEeeEEEEeC
Q 045720 730 V-SDKYTVKSPIAISFE 745 (745)
Q Consensus 730 ~-~~~~~v~~P~~v~~~ 745 (745)
. .++....+|+...|+
T Consensus 122 ~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EETTSCEEEEEEEEEEC
T ss_pred EeecCCcEEEEEecccc
Confidence 7 788888999887663
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.9 Score=39.14 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=51.3
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeC-CCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVA-PEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~-p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+...+.+++++|.|+.+..|+..... +.+...+++|.+-.+.+ |++++++|+|.+... +.+.=.|++.
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~p-g~~~~i~V~f~~~~~---g~f~~~i~v~ 93 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEP-SGVQAIQISFSSIIL---GNFEEEFLVN 93 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECT-TBCCEEEEEECCCCC---EEEEEEECEE
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECC-CCEEEEEEEEECCCc---ceEEEEEEEE
Confidence 44688889999999999999984311 12245778999999988 999999999998754 3344456666
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=89.74 E-value=0.46 Score=54.41 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=48.9
Q ss_pred CcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-c-----------------ccc----------------c
Q 045720 394 VDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-D-----------------STL----------------I 434 (745)
Q Consensus 394 ~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-~-----------------~~~----------------~ 434 (745)
.+++|||+|+.+|.| ..+++.+||.|+|++++.... . ... .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 489999999999998 778889999999999875321 0 000 0
Q ss_pred cccccceEEechhhHHHHHHHHH
Q 045720 435 QRNSLPNVRVSHAVSESIKAYIN 457 (745)
Q Consensus 435 ~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
....||+..|+..+++.|++.+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 02358999999999999987654
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.78 E-value=0.27 Score=60.18 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=22.8
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCC
Q 045720 143 SNFGKGVIIGVLDTGITPGHPSFN 166 (745)
Q Consensus 143 g~~G~Gv~VaVIDtGid~~Hp~f~ 166 (745)
.+.|+||+|||+|||||+.+|.|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 579999999999999999999997
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.32 E-value=1.9 Score=37.74 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=45.8
Q ss_pred CEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
...+++.|.|....+.+|.+++...+++++. .+..+.+++ ++..++.|.+..+..
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEEECGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEEEChH
Confidence 5788999999999999999999987776553 255688888 999999999988765
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=86.67 E-value=0.82 Score=52.92 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=50.5
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCC----C---------------------------ccccc--
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELF----G---------------------------DSTLI-- 434 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~----~---------------------------~~~~~-- 434 (745)
..+++|||+|+++|.| +.+++.+||+|+|++++... + .....
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 4579999999999988 78899999999999986310 0 00000
Q ss_pred ---------------cccccceEEechhhHHHHHHHHHc
Q 045720 435 ---------------QRNSLPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 435 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
....||++.|+..+++.|++.+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 024699999999999999988754
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=82.00 E-value=0.76 Score=50.29 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCC
Q 045720 476 GSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTT 515 (745)
Q Consensus 476 ~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
...+.++.||++||.. ||+|||++|+++++..
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 3456899999999855 9999999999998753
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=81.74 E-value=12 Score=39.56 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=61.1
Q ss_pred cCEEEEEEEEecCCCceeEEEEEeCCCCeE----EEEEcCeEEeccCCcEEEEEEEEEecCCC------CCCeEEEEEEE
Q 045720 660 SPQTYHRTVTNVGKAKSFYTRQMVAPEGVE----ITVQPHNISFAAKNQKVTYSVTFTRTGNT------NASSAQAYLSW 729 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~~ty~~~~~~p~~~~----v~v~p~~~~~~~~~~~~~~~vt~~~~~~~------~~~~~~G~~~~ 729 (745)
...+-++||+|.|..+.+|++......... ++++|..-++.+ |++.+++|++...... +....+--|++
T Consensus 46 ~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~P-ge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL 124 (366)
T 3qis_A 46 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVL 124 (366)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEE
T ss_pred CeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECC-CCEEEEEEEEEECHHHHHHHhcCccccceEEEE
Confidence 367888999999999999999755332222 778999999988 9999999999887731 11344556666
Q ss_pred E-cCceeEEeeEEEEe
Q 045720 730 V-SDKYTVKSPIAISF 744 (745)
Q Consensus 730 ~-~~~~~v~~P~~v~~ 744 (745)
. .+++..-+|+-..+
T Consensus 125 ~ve~G~d~FI~v~~~~ 140 (366)
T 3qis_A 125 HLDRGKDYFLTISGNY 140 (366)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EEeCCCcEEEEecccc
Confidence 6 66666677766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 745 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-46 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-14 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 8e-14 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-10 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 7e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 9e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 4e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 4e-10 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 7e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 6e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-10 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-09 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 5e-09 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-06 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 8e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 6e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 6e-07 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 2e-06 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 169 bits (427), Expect = 2e-46
Identities = 85/475 (17%), Positives = 151/475 (31%), Gaps = 77/475 (16%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
DS I ++D+G H N N + G N
Sbjct: 16 LSDSQ-AGNRTICIIDSGYDRSHNDLNA----------------------NNVTGTNNSG 52
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVY--KVCNPNV 257
G + HGTH A T A N VG+ P + ++ KV N
Sbjct: 53 TGNWYQPGNNNAHGTHVAGTIAAI---------ANNEGVVGVMPNQNANIHIVKVFNEAG 103
Query: 258 YCPESAVIAGIDAAIEDG-VDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNS 316
+ S+++A ID + G +V+++S G A G+ + AAGN+
Sbjct: 104 WGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALNTHYNNGVLLIAAAGNA 160
Query: 317 GPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376
G + Y+ +++V A + + +Q G + + L
Sbjct: 161 GDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADIT 220
Query: 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQR 436
+ V + + +NA +
Sbjct: 221 IGG--------QSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAE----------CTV 262
Query: 437 NSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGI 496
N + A + + + S + G+ +V + P +P +
Sbjct: 263 NGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFL 322
Query: 497 L--KPDIIGPGLNIIAAWK--------TTVDPLANRVYTFDIVSGTSMACPHLSGVAALL 546
+ DI P +++ A + ++ +GTSMA PH+SGVA L+
Sbjct: 323 VDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382
Query: 547 KSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601
S HP S + +++A+ TAD +++ G+ G G +N A
Sbjct: 383 WSYHPECSASQVRAALNATADDLSVAGRD-----------NQTGYGMINAVAAKA 426
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 71.9 bits (175), Expect = 3e-14
Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 35/198 (17%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W + G I V+DTG+ HP + + + F
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDF 59
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
D +D HGTH A AA + I GMAP + + + N
Sbjct: 60 VDNDYDPMDLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVRALDRNGSG 111
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
S + I A + G +V++LS G + + A A +G V AAGN+G +
Sbjct: 112 TLSDIADAIIYAADSGAEVINLSLG---CDCHTTTLENAVNYAWNKGSVVVAAAGNNGSS 168
Query: 320 HYTLVNDAPWMLTVGAST 337
++ VGA
Sbjct: 169 TTFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+ +SGTSMA PH++G+AALL S N I+ A+ TAD ++ G
Sbjct: 217 NRYAYMSGTSMASPHVAGLAALLASQGRNN--IEIRQAIEQTADKISGTGTY-------- 266
Query: 584 ADLYAVGAGQVNPSKA 599
G++N A
Sbjct: 267 -----FKYGRINSYNA 277
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 70.3 bits (171), Expect = 8e-14
Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 41/231 (17%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G V + V+D+GI HP K+ G +
Sbjct: 17 HSQGYTGSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASMV 51
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
+ D HGTH V G + +G+AP A L KV +
Sbjct: 52 PSETNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSG 102
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
S +I GI+ AI + +DV+++S G + A +A+ G+ V AAGN G +
Sbjct: 103 QYSWIINGIEWAIANNMDVINMSLG---GPSGSAALKAAVDKAVASGVVVVAAAGNEGTS 159
Query: 320 H----YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIP 366
P ++ VGA +G + + + +P
Sbjct: 160 GSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLP 210
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 59.5 bits (143), Expect = 3e-10
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 23/102 (22%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAA 557
+ D++ PG++I + + +GTSMA PH++G AAL+ S HPNW++
Sbjct: 195 ELDVMAPGVSIQSTLPGN---------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQ 245
Query: 558 IKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
++S++ T + D + G G +N A
Sbjct: 246 VRSSLENTTTKLG--------------DSFYYGKGLINVQAA 273
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 66.6 bits (161), Expect = 6e-12
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 490 SRISPGILKPDIIGPGLNIIAAW---------KTTVDPLANRVYTFDIVSGTSMACPHLS 540
+ S + PG+ I++ + A T+D GTSMA PH++
Sbjct: 329 AGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVT 388
Query: 541 GVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
GV A+L PN I+ + TA N G + G G V A
Sbjct: 389 GVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTGYGLVKLDAA 436
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 66.2 bits (160), Expect = 7e-12
Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 38/219 (17%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
+ G +I+ V+DTG+ HP + + + +
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEE------------------- 187
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP---- 255
+ GTH A T A VG+AP A + + +
Sbjct: 188 LPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALV 238
Query: 256 --NVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAA 313
N Y + V AGI A + G V++ S+G Y + +A A+ G+ + ++A
Sbjct: 239 GGNGYVGDDYVAAGIIWATDHGAKVMNHSWG---GWGYSYTMKEAFDYAMEHGVVMVVSA 295
Query: 314 -GNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQ 351
N+ +H+ P ++ V A G ++
Sbjct: 296 GNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSR 334
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 63.8 bits (154), Expect = 9e-12
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 472 VIGGGSAPQVVAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVY 524
G S +++ R + ++ G + G GL+I+A Y
Sbjct: 149 AASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTY 208
Query: 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPA 584
++GTSMA PH++G AAL+K +P+WS+ I++ + TA ++
Sbjct: 209 AS--LNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------------ST 254
Query: 585 DLYAVGAGQVNPSKA 599
+LY G+G VN A
Sbjct: 255 NLY--GSGLVNAEAA 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 63.4 bits (153), Expect = 2e-11
Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 39/204 (19%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G GV + VLDTGI+ HP N G F
Sbjct: 17 HNRGLTGSGVKVAVLDTGIST-HPDLNIRG--------------------------GASF 49
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
+ S D GHGTH G + +G+AP A L KV +
Sbjct: 50 VPGEPSTQDGNGHGTHV---------AGTIAALNNSIGVLGVAPSAELYAVKVLGASGSG 100
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
S++ G++ A +G+ V +LS G S + +A A RG+ V A+GNSG
Sbjct: 101 SVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 320 HYTLVNDAPWMLTVGASTIDRGIT 343
+ + VGA+ +
Sbjct: 158 SISYPARYANAMAVGATDQNNNRA 181
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 61.9 bits (149), Expect = 4e-11
Identities = 53/216 (24%), Positives = 78/216 (36%), Gaps = 42/216 (19%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
G V + VLDTGI HP N +G +F
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDLNV-------------------------VGGASFV 51
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
G + D GHGTH G +G+AP L KV N +
Sbjct: 52 AG-EAYNTDGNGHGTHV---------AGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSG 101
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
S +++GI+ A +G+DV+++S G + +A A RG+ V AAGNSG +
Sbjct: 102 SYSGIVSGIEWATTNGMDVINMSLG---GASGSTAMKQAVDNAYARGVVVVAAAGNSGNS 158
Query: 320 HYT----LVNDAPWMLTVGASTIDRGITISVRLGNQ 351
T ++ VGA + +G +
Sbjct: 159 GSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 59.2 bits (142), Expect = 4e-10
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAA 557
+ +++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S +
Sbjct: 194 ELEVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQ 244
Query: 558 IKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
+++ + +TA T L + Y G G +N A
Sbjct: 245 VRNRLSSTA-------------TYLGSSFY-YGKGLINVEAA 272
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.1 bits (149), Expect = 7e-11
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+ +GTS + P +G+ AL A+ N + ++ ++ T+ +L
Sbjct: 251 KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGR 310
Query: 584 ADLYAVGAGQVNPSKA 599
++ G G ++
Sbjct: 311 KVSHSYGYGLLDAGAM 326
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 29/259 (11%), Positives = 64/259 (24%), Gaps = 34/259 (13%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W G G+++ +LD GI HP +F
Sbjct: 30 WAQGFTGHGIVVSILDDGIEKNHPDLAG-----------------------NYDPGASFD 66
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
D + + VG+A A + ++ + V
Sbjct: 67 VN-DQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVTD 125
Query: 260 PESAVIAGIDAAIED------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAA 313
A G++ G + + + + G A+
Sbjct: 126 AVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWAS 185
Query: 314 GNS----GPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKR 369
GN + ++ + L++ ++T + + + +
Sbjct: 186 GNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVT 245
Query: 370 LPLVYPDARNHSTTTFCSP 388
L +H+ T+ +P
Sbjct: 246 TDLRQKCTESHTGTSASAP 264
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAA 557
+I PG ++ + W ++ +SGTSMA PH+SG+AA + + +P+ S+
Sbjct: 224 DIEISAPGSSVYSTWYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQ 274
Query: 558 IKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVN 595
++S + A +V+++G D YA G G
Sbjct: 275 LRSNLQERAKSVDIKG----GYGAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFND 167
+ G G+ I VLDTG+ HP +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 58.0 bits (138), Expect = 1e-09
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 493 SPGILKPDIIGPGLNIIAAWKTTV---DPLANRVYTFDIVSGTSMACPHLSGVAALLKSA 549
G +KPD++ PG I++A + AN + + GTSMA P ++G A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 550 HP-----NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599
+ +K+A++ A + L G G+V K+
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWGRVTLDKS 315
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 45/279 (16%), Positives = 79/279 (28%), Gaps = 32/279 (11%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G+G I+ V DTG+ G + K+ + G+ +
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMHEAF-----------------RGKITALYAL--GRTNN 61
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
A D GHGTH A + + + + + S +
Sbjct: 62 ANDTNGHGTHVAGSV---------LGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 266 AGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT--L 323
A G + + S+G ++ Y + + + AAGN GPN T
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISA 172
Query: 324 VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTT 383
A +TVGA+ R S + D K + + +
Sbjct: 173 PGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARS 232
Query: 384 TFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL 422
+ + + + + V AG A +
Sbjct: 233 SLAPDSSFWANHDSKYAYMGGTSMATPIV--AGNVAQLR 269
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 55.9 bits (133), Expect = 5e-09
Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 33/197 (16%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W + G G I ++DTG+ HP K++G +F
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFV 59
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
D + + GHGTH A AA + G AP A + +V + +
Sbjct: 60 D-NDSTPQNGNGHGTHCAGIAA--------AVTNNSTGIAGTAPKASILAVRVLDNSGSG 110
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
+AV GI A + G V+SLS G + + + + AGN+ PN
Sbjct: 111 TWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPN 170
Query: 320 HYTLVNDAPWMLTVGAS 336
+ ++A + + +
Sbjct: 171 YPAYYSNAIAVASTDQN 187
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
T+ +SGTSMA PH++GVA LL S + + I++A+ TAD ++
Sbjct: 216 STYASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTAD-------------KIS 260
Query: 584 ADLYAVGAGQVNPSKA 599
G+VN KA
Sbjct: 261 GTGTYWAKGRVNAYKA 276
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 8e-09
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPA 584
+ GTS A P +GV LL A+PN + ++ + +A + + +
Sbjct: 256 CSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGK 315
Query: 585 DL-YAVGAGQVNPSKA 599
+ G G+++ K
Sbjct: 316 KYSHRYGFGKIDAHKL 331
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 41/283 (14%), Positives = 75/283 (26%), Gaps = 43/283 (15%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF 199
W ++ G GV+ ++D G+ + D N F
Sbjct: 39 WYNNITGAGVVAAIVDDGLDYENEDLKD----------------------NFCAEGSWDF 76
Query: 200 CGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYC 259
H A N F + A ++ ++ + ++
Sbjct: 77 NDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVG-----VGYNAKISGIRILSGDITT 131
Query: 260 PESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPN 319
A + + D D+ S S+G + G + +A+ +G+ +S
Sbjct: 132 --EDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGV---TEGRDSKGA 185
Query: 320 HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379
Y + D G + P A
Sbjct: 186 IYVFASGNGGT------RGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSE----GCSAVM 235
Query: 380 HSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL 422
T + S E + S D+ G+ G S L AG ++L
Sbjct: 236 AVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLL 278
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.4 bits (124), Expect = 6e-08
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 524 YTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKP 575
+ +SGTSMA PH++G+AA L + + A+ + TA+ +L P
Sbjct: 215 GSTRSISGTSMATPHVAGLAAYLMTLGKTTA-ASACRYIADTANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 50/256 (19%), Positives = 81/256 (31%), Gaps = 50/256 (19%)
Query: 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
+S ++ D + G+G + V+DTGI HP F G
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEFE---------------------------GR 52
Query: 196 RNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
S+ D GHGTH A T +A L KV +
Sbjct: 53 AQMVKTYYYSSRDGNGHGTHCAGTVGSRTYG--------------VAKKTQLFGVKVLDD 98
Query: 256 NVYCPESAVIAGIDAAIEDGVD---VLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIA 312
N S +IAG+D D + + L L Y + + A G+ V++A
Sbjct: 99 NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVA 158
Query: 313 AGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPL 372
AGN+ + + + ++ S + G L +
Sbjct: 159 AGNNNADARNYSPASEPSVCTVGASDRYDRRSS------FSNYGSVLDIFGPGTDILSTW 212
Query: 373 VYPDARNHSTTTFCSP 388
+ R+ S T+ +P
Sbjct: 213 IGGSTRSISGTSMATP 228
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 50.1 bits (118), Expect = 6e-07
Identities = 28/188 (14%), Positives = 46/188 (24%), Gaps = 34/188 (18%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G+G I ++ G S
Sbjct: 23 GQGQCIAIIALGGGYDETSLAQ-------------------------YFASLGVSAPQVV 57
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
++ G G A +AP A +AVY N + I
Sbjct: 58 SVSVDGATNQPTGDPNGPDGEVELDIEV----AGALAPGAKIAVYFAPNTD--AGFLNAI 111
Query: 266 AGIDAAIEDGVDVLSLSFGLGLSQF---YDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT 322
++S+S+G + + +A +A G+ V AAG+SG
Sbjct: 112 TTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGE 171
Query: 323 LVNDAPWM 330
Sbjct: 172 QDGLYHVD 179
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 23/223 (10%), Positives = 52/223 (23%), Gaps = 34/223 (15%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
+G++ G + G+ + +
Sbjct: 24 AANTTVGIITIGGVSQTLQDLQQ--------------------FTSANGLASVNTQTIQT 63
Query: 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVI 265
+ + + + VG A A + + +
Sbjct: 64 GSSNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLT 114
Query: 266 AGIDAAIED-GVDVLSLSFGLGLSQFYDNGIAKATFEAIR----RGIFVSIAAGNSGPNH 320
+ A+ D V+++S G + +G +A +G S+++G+ G
Sbjct: 115 QAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYE 174
Query: 321 YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWT 363
+ I+V T A T
Sbjct: 175 CNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNET 217
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.8 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.56 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.4 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 91.75 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 85.98 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=3.6e-54 Score=501.13 Aligned_cols=357 Identities=22% Similarity=0.233 Sum_probs=265.6
Q ss_pred CCceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHH----HHH--hhcCCCeE
Q 045720 39 GLQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEE----VKA--METKKGFI 112 (745)
Q Consensus 39 ~~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~----i~~--L~~~p~V~ 112 (745)
.+++|||+||++. ..++++++. +.++++.+. .++.+.++++... .+. +..+|+|+
T Consensus 30 ~~~~~iV~~k~~~------~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 90 (671)
T d1r6va_ 30 TEGKILVGYNDRS------EVDKIVKAV------------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIR 90 (671)
T ss_dssp CTTEEEEEESSHH------HHHHHHHHH------------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred CCCeEEEEECCcc------CHHHHHHhc------------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCce
Confidence 4789999999653 233444444 456777776 4777888876432 222 34579999
Q ss_pred EEEEcceeccccc----C-----------------------CCCccccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCC
Q 045720 113 SARVENTLHLHTT----H-----------------------TPNFLGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHP 163 (745)
Q Consensus 113 ~V~~~~~~~~~~~----~-----------------------s~~~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp 163 (745)
+|||+...++... . ....|+++. ++++|....+|+||+|||||||||++||
T Consensus 91 ~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hp 170 (671)
T d1r6va_ 91 YVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp EEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSG
T ss_pred EECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCCh
Confidence 9999865443210 0 001233332 2334444569999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccCcccCccccceeeccCCC----CCCCCCCCCChhHHHHhhcccCcCCCcccccCCCcee
Q 045720 164 SFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK----DGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAV 239 (745)
Q Consensus 164 ~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~----~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~ 239 (745)
+|.++ ++..+++..+. +.++.|..+|||||||||+|+.. +.+ +.
T Consensus 171 dl~~~-----------------------~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~--------~~g-~~ 218 (671)
T d1r6va_ 171 DLEGQ-----------------------VIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------GKG-IV 218 (671)
T ss_dssp GGTTT-----------------------BCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------SSS-CC
T ss_pred hhcCC-----------------------cccCccccccCCCCCCCcCcccCCCCccccceeeeecc--------ccc-ee
Confidence 99864 22222222111 11456788999999999999742 122 47
Q ss_pred eecCCceEEEEEeeCC-----CCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEec
Q 045720 240 GMAPLAHLAVYKVCNP-----NVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAA 313 (745)
Q Consensus 240 GvAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AA 313 (745)
||||+|+|+++|+++. ..+ ...+.++++|+||+++|++|||||||+.. ....+..++.++.++|+++|+||
T Consensus 219 GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv~vV~aA 295 (671)
T d1r6va_ 219 GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSA 295 (671)
T ss_dssp CSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEEC
T ss_pred eecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccCcEEEEE
Confidence 9999999999999972 112 56778999999999999999999999753 34567778889999999999999
Q ss_pred CCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCC
Q 045720 314 GNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLK 392 (745)
Q Consensus 314 GN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 392 (745)
||++.+. ..+++..|++|+|||++...
T Consensus 296 GN~~~~~~~~~Pa~~~~vi~Vga~~~~~---------------------------------------------------- 323 (671)
T d1r6va_ 296 GNNTSDSHHQYPAGYPGVIQVAALDYYG---------------------------------------------------- 323 (671)
T ss_dssp CSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------------------------------
T ss_pred ecCCCCccccCCccCCceEEEEEecCCC----------------------------------------------------
Confidence 9998765 46778899999999853211
Q ss_pred CCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceE
Q 045720 393 SVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTV 472 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 472 (745)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC---------CCCcccceeeecCCcchhHHHHHHH
Q 045720 473 IGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP---------LANRVYTFDIVSGTSMACPHLSGVA 543 (745)
Q Consensus 473 ~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~---------~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
....+++||+|||.. ||+|||++|+|+++..... .....+.|..++|||||||||||++
T Consensus 324 ----~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~a 391 (671)
T d1r6va_ 324 ----GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVV 391 (671)
T ss_dssp ----TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHH
T ss_pred ----CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHH
Confidence 112578999999976 9999999999998754321 2223468999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCc
Q 045720 544 ALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGL 604 (745)
Q Consensus 544 ALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~l 604 (745)
|||+|++|+|++.|||++|++||++++.. ..+..||||+||+.+||+..+
T Consensus 392 ALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 392 AVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCcC
Confidence 99999999999999999999999987433 356789999999999998544
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.2e-49 Score=416.46 Aligned_cols=260 Identities=28% Similarity=0.390 Sum_probs=213.7
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|+++++|+||+|||||||||++||+|.++ ++..++|.+... .+.|..+||||
T Consensus 20 ~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~~-~~~d~~~HGT~ 75 (280)
T d1dbia_ 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDNDY-DPMDLNNHGTH 75 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTBS-CCCCSSSHHHH
T ss_pred HHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-----------------------eeecccccCCCC-ccccccccccc
Confidence 467999999999999999999999999999763 445566665544 67789999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||+|+|...+ .+.+.||||+|+|+.+|+++....+...++++||+|++++|++|||||||... ..+..
T Consensus 76 vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~---~~~~~ 144 (280)
T d1dbia_ 76 VAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC---HTTTL 144 (280)
T ss_dssp HHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC---CCHHH
T ss_pred eeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc---cchhH
Confidence 99999987532 23358999999999999998444488899999999999999999999999763 33455
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..+...+.++|+++|+||||+|......++..+++|+||+.+
T Consensus 145 ~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~-------------------------------------- 186 (280)
T d1dbia_ 145 ENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD-------------------------------------- 186 (280)
T ss_dssp HHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC--------------------------------------
T ss_pred HHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec--------------------------------------
Confidence 566778899999999999999988888889999999999842
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++||.. |++|||.+|++.... ..|..++|||||
T Consensus 187 ---------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~---------~~~~~~sGTS~A 228 (280)
T d1dbia_ 187 ---------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG---------NRYAYMSGTSMA 228 (280)
T ss_dssp ---------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT---------TEEEEECSHHHH
T ss_pred ---------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC---------cceeccCCcccc
Confidence 223678999999876 999999999999877 389999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||+|||++|||+|. .+++.+||++|++||+++.. ++..||+|+||+++||+
T Consensus 229 aP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 229 SPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred chHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHHHcC
Confidence 99999999999995 45899999999999987632 44579999999999985
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=6.3e-50 Score=445.30 Aligned_cols=370 Identities=22% Similarity=0.289 Sum_probs=234.5
Q ss_pred cccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC-CCCC
Q 045720 131 LGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD-GSAI 207 (745)
Q Consensus 131 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~-~~~~ 207 (745)
||+.. ++.+|. .+|+||+|||||||||++||+|.++ ++..+++....+ ..+.
T Consensus 6 wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~~ 60 (435)
T d1v6ca_ 6 WGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPG 60 (435)
T ss_dssp HHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCC
T ss_pred ccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC-----------------------eeeeeccCCCCCCCCCC
Confidence 44443 334555 4899999999999999999999864 222333332221 1567
Q ss_pred CCCCChhHHHHhhcccCcCCCcccccCCCceeeecC--CceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccC
Q 045720 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAP--LAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFG 284 (745)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG 284 (745)
|++||||||||||||+..+ . .+.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|||
T Consensus 61 d~~gHGThvAgiiag~~~~--------~-g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g 131 (435)
T d1v6ca_ 61 NNNAHGTHVAGTIAAIANN--------E-GVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (435)
T ss_dssp SSCCHHHHHHHHHHCCCSS--------S-BCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhccCCC--------C-ceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccC
Confidence 8999999999999997421 1 2479999 899999999973334677789999999986 59999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCcee--eeeecccC
Q 045720 285 LGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETY--DGEALWQW 362 (745)
Q Consensus 285 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~--~g~~~~~~ 362 (745)
... ....+..++.++.++|+++|+||||+|....++++..+++|+||+++.+......-..+....+ .|..++..
T Consensus 132 ~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st 208 (435)
T d1v6ca_ 132 GSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (435)
T ss_dssp BSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEE
T ss_pred CCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeee
Confidence 863 3455667777899999999999999999999999999999999997665432110000000000 00000000
Q ss_pred CC----------------CCCCce--eEEecCCCC------CC----CcCCC--CCCCCCCCcccceEEEEecCCc----
Q 045720 363 TD----------------IPSKRL--PLVYPDARN------HS----TTTFC--SPETLKSVDVKGKVVLCQRGAS---- 408 (745)
Q Consensus 363 ~~----------------~~~~~~--~~~~~~~~~------~~----~~~~c--~~~~~~~~~~~gkivl~~~~~~---- 408 (745)
.. +..... ..+...... .. ....| ........++.+++.++.+...
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (435)
T d1v6ca_ 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSS 288 (435)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSS
T ss_pred eecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCcccc
Confidence 00 000000 000000000 00 00000 0001112233344444433221
Q ss_pred ------hhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeee
Q 045720 409 ------GDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVV 482 (745)
Q Consensus 409 ------~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 482 (745)
.......++.+ .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~------------------------------------------------------------~~~ 308 (435)
T d1v6ca_ 289 YPEINSTKACKTAGAKG------------------------------------------------------------IIV 308 (435)
T ss_dssp CTHHHHHHHHHHTTCSE------------------------------------------------------------EEE
T ss_pred ceeeeeceeecccCCcc------------------------------------------------------------eEE
Confidence 11111112222 233
Q ss_pred cccCCCCCCCC--CCCccceeeeCCccEEeeccCCCCC--------CCCcccceeeecCCcchhHHHHHHHHHHHhhCCC
Q 045720 483 AFSGRGPSRIS--PGILKPDIIGPGLNIIAAWKTTVDP--------LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPN 552 (745)
Q Consensus 483 ~fSs~Gp~~~~--~g~~KPDi~APG~~I~sa~~~~~~~--------~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 552 (745)
.+++.+|.... .+..|||+.+||..|.++....... .......|..|||||||||||||++|||||+||+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 388 (435)
T d1v6ca_ 309 YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPE 388 (435)
T ss_dssp ECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred eccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCC
Confidence 34444444321 2467999999998887553211000 1112247999999999999999999999999999
Q ss_pred CCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCCceecCCCCCccccccc
Q 045720 553 WSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCG 619 (745)
Q Consensus 553 ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~~~~ 619 (745)
|+++|||++||+||+++. .++++++||+|+||+++|++ ||...|+
T Consensus 389 ~s~~~vk~~L~~TA~~~~-----------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 389 CSASQVRAALNATADDLS-----------VAGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp SCHHHHHHHHHHHSBCCS-----------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred CCHHHHHHHHHhhCcccC-----------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 999999999999999873 24577899999999999975 7777775
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4.9e-49 Score=410.85 Aligned_cols=258 Identities=33% Similarity=0.497 Sum_probs=216.2
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|.++++|+||+|||||||||++||+|+ +...++|..+.. .+.|..+||||
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-------------------------~~~~~~~~~~~~-~~~d~~gHGT~ 66 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGEA-YNTDGNGHGTH 66 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTCC-TTCCSSSHHHH
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-------------------------ccCCccccCCCC-CCCCccccccc
Confidence 4568999999999999999999999999995 233456665533 56788999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||||++.... .+ +.|+||+|+|+.+|+++....+..++++++++++.+++++|+|+|||... .....
T Consensus 67 vAgii~~~~~~--------~~-~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~---~~~~~ 134 (274)
T d1r0re_ 67 VAGTVAALDNT--------TG-VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS---GSTAM 134 (274)
T ss_dssp HHHHHHCCSSS--------SB-CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS---CCHHH
T ss_pred ccccccccccc--------cc-ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecccccccc---chhhh
Confidence 99999987422 12 37999999999999998333367889999999999999999999999863 23445
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCC----CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCcee
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNH----YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLP 371 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 371 (745)
.....++.++++++|+||||+|... ..+++..+++|+||+.+
T Consensus 135 ~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~---------------------------------- 180 (274)
T d1r0re_ 135 KQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD---------------------------------- 180 (274)
T ss_dssp HHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC----------------------------------
T ss_pred hHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC----------------------------------
Confidence 5566688899999999999998653 34567788999999842
Q ss_pred EEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHH
Q 045720 372 LVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSES 451 (745)
Q Consensus 372 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 451 (745)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecC
Q 045720 452 IKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSG 531 (745)
Q Consensus 452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 531 (745)
..+.+++||++||. |||+|||++|+++.+.+ .|..++|
T Consensus 181 -------------------------~~~~~~~~s~~g~~--------~di~APG~~i~~~~~~~---------~~~~~sG 218 (274)
T d1r0re_ 181 -------------------------SNSNRASFSSVGAE--------LEVMAPGAGVYSTYPTN---------TYATLNG 218 (274)
T ss_dssp -------------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETTT---------EEEEECS
T ss_pred -------------------------CCCCcccccCCCCC--------EEEEecCCCcccccCCC---------CeEeecC
Confidence 12367899999974 59999999999998774 8999999
Q ss_pred CcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 532 TSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 532 TSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||||||+|||++|||+|++|+|++.+||++|++||+++. ++..||+|+||+++|++
T Consensus 219 TS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred CchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCceEcCeecHHHhcC
Confidence 999999999999999999999999999999999998762 45689999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.1e-48 Score=409.27 Aligned_cols=259 Identities=31% Similarity=0.428 Sum_probs=222.3
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++.+ .+.|..+||||
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-----------------------~~~~~~~~~~~~-~~~d~~~HGT~ 74 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDNDS-TPQNGNGHGTH 74 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTBS-CCCCSSSHHHH
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-----------------------eeccccccccCc-ccccccccccc
Confidence 56699988 999999999999999999999763 455677776654 67789999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||+|++...++ ..+.||||+|+|+.+|++.....+...+++++|+++.+.+++|+|+|||... .....
T Consensus 75 vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~---~~~~~ 143 (279)
T d1thma_ 75 CAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---GNSGL 143 (279)
T ss_dssp HHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHH
T ss_pred cceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc---cchhH
Confidence 999999985332 2348999999999999998444478889999999999999999999999763 34556
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..+...+.++|+++|+|+||+|......+...+++|+|||++
T Consensus 144 ~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~-------------------------------------- 185 (279)
T d1thma_ 144 QQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD-------------------------------------- 185 (279)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC--------------------------------------
T ss_pred HHHHHHHHhcCceEEEeccccccCCCcccccccccccccccc--------------------------------------
Confidence 677778899999999999999998888888999999999852
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++|++. ||+|||.+|+++.+.+ .|..++|||||
T Consensus 186 ---------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~---------~~~~~sGTS~A 227 (279)
T d1thma_ 186 ---------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS---------TYASLSGTSMA 227 (279)
T ss_dssp ---------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETTT---------EEEEECSHHHH
T ss_pred ---------------------CCCCCccccCCCceE--------EEeeeeeccccccCcc---------cccccCCcchh
Confidence 123678999999986 9999999999999874 89999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||+|||++|||+|.+| ++.+||++|++||+++. ..+..||+|+||+++||+
T Consensus 228 aP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 228 TPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-------------TBTTTBSSEECCHHHHHH
T ss_pred hHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-------------CCCCcceeeeEcHHHhhC
Confidence 9999999999999765 79999999999998763 245679999999999875
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2e-48 Score=407.78 Aligned_cols=259 Identities=31% Similarity=0.467 Sum_probs=217.1
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|+++++|+||+|+|||||||++||+|+.. ..+++.........+..+||||
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-------------------------~~~~~~~~~~~~~~~~~~HGT~ 67 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------GGASMVPSETNPFQDNNSHGTH 67 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-------------------------EEEECCTTCCCTTCCSSSHHHH
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-------------------------CCccccCCCCCCCcCcCCCCce
Confidence 567999999999999999999999999999632 2344444332133456799999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCch
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 294 (745)
|||||+|.... ....||||+|+|+.+|+++ ..+ +..++++++|+|+++.+++|+|+|||.. .....
T Consensus 68 vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~-~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~---~~~~~ 134 (281)
T d1to2e_ 68 VAGTVAALNNS---------IGVLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGP---SGSAA 134 (281)
T ss_dssp HHHHHHCCSSS---------SSBCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHH
T ss_pred eecccccCCCC---------CCcceeecccEEEEEEEeC-CCCCcCHHHHHHHHHHHHhccccccccccCCC---cchHH
Confidence 99999987421 1137999999999999998 444 7788899999999999999999999976 34466
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCC----CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCce
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNH----YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRL 370 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 370 (745)
+..++.++.++|+++|+||||+|... ..+++..+++|+||+.+
T Consensus 135 ~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~--------------------------------- 181 (281)
T d1to2e_ 135 LKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD--------------------------------- 181 (281)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC---------------------------------
T ss_pred HHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec---------------------------------
Confidence 77788889999999999999998753 34567888999999852
Q ss_pred eEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 045720 371 PLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 371 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeec
Q 045720 451 SIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVS 530 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~s 530 (745)
..+.++.||++||.. |++|||.+|.++.+.+ .|..++
T Consensus 182 --------------------------~~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~---------~~~~~~ 218 (281)
T d1to2e_ 182 --------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGN---------KYGAYN 218 (281)
T ss_dssp --------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETTT---------EEEEEC
T ss_pred --------------------------CCCCCCcccCCCCCc--------cccCCCCCceeecCCC---------eeEccc
Confidence 123678899999976 9999999999998874 889999
Q ss_pred CCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCC
Q 045720 531 GTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDP 602 (745)
Q Consensus 531 GTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 602 (745)
|||||||+|||++|||+|++|.|++.+||++|++||+++. ++..||+|+||+.+|++.
T Consensus 219 GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHhh
Confidence 9999999999999999999999999999999999999762 355799999999999983
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=4.1e-48 Score=402.67 Aligned_cols=257 Identities=33% Similarity=0.487 Sum_probs=219.1
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
++.+|+++++|+||+|+||||||| +||+|... ..++|.+... .+.|..+||||
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-------------------------~~~~~~~~~~-~~~d~~~HGT~ 65 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-------------------------GGASFVPGEP-STQDGNGHGTH 65 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-------------------------EEEECSTTCC-SCSCSSSHHHH
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-------------------------ccccccCCCC-Cccccchhhhe
Confidence 567999999999999999999998 89999632 2445555543 66788999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||||++.... ....|+||+|+|+.+|++..........+.++++++..+++++||+|||... .....
T Consensus 66 vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~---~~~~~ 133 (269)
T d1gcia_ 66 VAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS---PSATL 133 (269)
T ss_dssp HHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS---CCHHH
T ss_pred ecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc---ccchH
Confidence 99999987432 2247999999999999998444477888999999999999999999999763 33445
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..+...+.++|+++|+||||+|.....+++..|++|+||++.
T Consensus 134 ~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~-------------------------------------- 175 (269)
T d1gcia_ 134 EQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD-------------------------------------- 175 (269)
T ss_dssp HHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC--------------------------------------
T ss_pred HHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc--------------------------------------
Confidence 566778899999999999999998888899999999999852
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++||.. ||+|||.++.++.+.. .|..++|||||
T Consensus 176 ---------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~---------~~~~~sGTS~A 217 (269)
T d1gcia_ 176 ---------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS---------TYASLNGTSMA 217 (269)
T ss_dssp ---------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETTT---------EEEEECSHHHH
T ss_pred ---------------------cCCCcccccCCCCCc--------eEEEeeecceeccCCC---------ceEecCCcchH
Confidence 123678899999875 9999999999998873 89999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+++|++
T Consensus 218 aP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence 99999999999999999999999999999998763 34579999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.1e-43 Score=373.11 Aligned_cols=291 Identities=27% Similarity=0.340 Sum_probs=220.5
Q ss_pred ccccCC--CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC---
Q 045720 130 FLGLHR--SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--- 204 (745)
Q Consensus 130 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--- 204 (745)
.|++++ ++.+|..+++|+||+|+|||||||++||+|.++ +...++|......
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~ 63 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN 63 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------ccccccccCCCCCCCC
Confidence 455543 677999999999999999999999999999864 3344555443221
Q ss_pred CCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC-----CCcEE
Q 045720 205 SAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED-----GVDVL 279 (745)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-----g~dVI 279 (745)
...|..+|||||||||+|.... ....+.||||+|+|+.++++.....+..++++.+++++++. ...|+
T Consensus 64 ~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~ 136 (309)
T d2ixta1 64 SCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (309)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred Cccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccc
Confidence 5567889999999999987532 22234799999999999999844447888899999998875 35789
Q ss_pred EeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccccccceEEEEEcCCCceeeee
Q 045720 280 SLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGE 357 (745)
Q Consensus 280 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 357 (745)
|+||+... .......++..+.++|+++|+||||++.... .+++..+++++|++..........
T Consensus 137 ~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~------------ 201 (309)
T d2ixta1 137 SMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY------------ 201 (309)
T ss_dssp EECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE------------
T ss_pred cccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc------------
Confidence 99999753 3345566667888999999999999987653 345677888888874221100000
Q ss_pred ecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccc
Q 045720 358 ALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRN 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 437 (745)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC
Q 045720 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD 517 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~ 517 (745)
..........++++|+.. ....||||+|||.+|+++.+..
T Consensus 202 ------------------------------------~~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~~-- 241 (309)
T d2ixta1 202 ------------------------------------RVADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYNG-- 241 (309)
T ss_dssp ------------------------------------EECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTTS--
T ss_pred ------------------------------------cccccccccccccccccc--cCCCcceeecCCCceeeecCCC--
Confidence 001112344567777765 4568999999999999998774
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+.. ......++.+|+|++|+
T Consensus 242 -------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 242 -------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp -------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTBTCBCCC
T ss_pred -------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccCCCEecC
Confidence 789999999999999999999999999999999999999999988654321 13355678899999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=3.9e-43 Score=366.89 Aligned_cols=238 Identities=35% Similarity=0.490 Sum_probs=194.8
Q ss_pred CCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhc
Q 045720 142 DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAA 221 (745)
Q Consensus 142 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiia 221 (745)
.+.+|+||+|+|||||||++||+|.++ +.....+.. .+.|.++|||||||||+
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------~~~~~~~~~----~~~d~~gHGT~VAgiia 78 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYYY----SSRDGNGHGTHCAGTVG 78 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESSS----CSSCSSSHHHHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC-----------------------ceeccCCCC----CcccccCcccccccccc
Confidence 455999999999999999999999864 111111111 45678999999999999
Q ss_pred ccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC-------CCcEEEeccCCCCCCCCCch
Q 045720 222 GNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED-------GVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 222 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-------g~dVIN~SlG~~~~~~~~~~ 294 (745)
|+. .|+||+|+|+.+|++........+.+..+++++... +++|+|+|||.. ..+.
T Consensus 79 ~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----~~~~ 140 (279)
T d2pwaa1 79 SRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSS 140 (279)
T ss_dssp CTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----CCHH
T ss_pred ccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc----cccc
Confidence 873 699999999999999844447788899999998874 345999999975 3456
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCc-ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEE
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNHYT-LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLV 373 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 373 (745)
+..++.++.++|+++|+||||++.+... .+...|++|+|||.+
T Consensus 141 ~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~------------------------------------ 184 (279)
T d2pwaa1 141 VNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD------------------------------------ 184 (279)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------------------------
T ss_pred cchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe------------------------------------
Confidence 7777778999999999999999876543 567889999999852
Q ss_pred ecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHH
Q 045720 374 YPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIK 453 (745)
Q Consensus 374 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 453 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCc
Q 045720 454 AYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTS 533 (745)
Q Consensus 454 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 533 (745)
..+.++.||++||.. ||+|||.+|+++.+.+ .|..++|||
T Consensus 185 -----------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~~---------~~~~~sGTS 224 (279)
T d2pwaa1 185 -----------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG---------STRSISGTS 224 (279)
T ss_dssp -----------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETTT---------EEEEECSHH
T ss_pred -----------------------ecCCCccccCCCCcc--------ccccccccccccccCC---------cccCCCcch
Confidence 224678999999976 9999999999999874 899999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 534 MACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 534 mAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
||||+|||++|||+|++|.++++++|. |++||++. ....+|+|++|+
T Consensus 225 ~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 225 MATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES---------------CCBSCCTTSCCE
T ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC---------------CCCCCCCCChhh
Confidence 999999999999999999999887775 67788754 334689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.7e-41 Score=360.96 Aligned_cols=293 Identities=27% Similarity=0.335 Sum_probs=219.4
Q ss_pred CCcccC-CCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 137 SGFWKD-SNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 137 ~~~~~~-g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
+.+|.. |+||+||+|||||||||++||+|.... . ...++...+.+.... ...|..+||||
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-----------~~~~~~~~~~~~~~~--~~~d~~gHGT~ 71 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-----------FRGKITALYALGRTN--NANDTNGHGTH 71 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-----------TTTCEEEEEETTTTT--CCCCSSSHHHH
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------c-----------cCCcEEeecCCCCCC--CCCCCCCCCcc
Confidence 447775 999999999999999999999997431 1 122333444443322 56788999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCC
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY---CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYD 292 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 292 (745)
|||||+|+... ..||||+|+|+.+|+++ ..+ .....+..+++++...+++|+|+|||........
T Consensus 72 vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~ 139 (318)
T d1wmda2 72 VAGSVLGNGST-----------NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYT 139 (318)
T ss_dssp HHHHHHCCSSS-----------SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCC
T ss_pred ceeeccccccc-----------cchhhhcccceeeeeee-ecccccccchhhHHHHHHHHhcCCceeecccccccccccc
Confidence 99999987421 27999999999999998 443 3445578899999999999999999987655555
Q ss_pred chHHHHHHHHHhCCcEEEEecCCCCCCCCccc--CCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCce
Q 045720 293 NGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV--NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRL 370 (745)
Q Consensus 293 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 370 (745)
.....+...+.++++++|+|+||.|....... +..++++++.+........
T Consensus 140 ~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------------- 192 (318)
T d1wmda2 140 TDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF--------------------------- 192 (318)
T ss_dssp HHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG---------------------------
T ss_pred hhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc---------------------------
Confidence 66666666778999999999999997765543 4566777776532111000
Q ss_pred eEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHH
Q 045720 371 PLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 371 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 450 (745)
.
T Consensus 193 ---------------~---------------------------------------------------------------- 193 (318)
T d1wmda2 193 ---------------G---------------------------------------------------------------- 193 (318)
T ss_dssp ---------------C----------------------------------------------------------------
T ss_pred ---------------c----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC---CCCccccee
Q 045720 451 SIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP---LANRVYTFD 527 (745)
Q Consensus 451 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~---~~~~~~~y~ 527 (745)
........+..||++||.. ....|||++|||.+|+++....... .......|.
T Consensus 194 ----------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~ 249 (318)
T d1wmda2 194 ----------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYA 249 (318)
T ss_dssp ----------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEE
T ss_pred ----------------------cccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCccccCCCccee
Confidence 0011223567899999987 4578999999999999987664321 111224678
Q ss_pred eecCCcchhHHHHHHHHHHHhhCC-----CCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 528 IVSGTSMACPHLSGVAALLKSAHP-----NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p-----~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
.++|||||||+|||++|||+|++| .+++.+||++|++||+++.. +.++..||||+||+.+||+
T Consensus 250 ~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 250 YMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHHHT
T ss_pred eccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceecHHHHhC
Confidence 899999999999999999999754 67899999999999997743 3467789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.5e-40 Score=353.17 Aligned_cols=279 Identities=17% Similarity=0.211 Sum_probs=193.5
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC-----CCCCCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK-----DGSAIDYT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~-----~~~~~d~~ 210 (745)
++.+|.++++|+||+|||||||||++||+|.++.. ... .+++.+.. .....+..
T Consensus 26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~--------~~~-------------~~~~~~~~~~~~~~~~~~~~~ 84 (334)
T d1p8ja2 26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD--------PGA-------------SFDVNDQDPDPQPRYTQMNDN 84 (334)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC--------GGG-------------CEETTTTBSCCCCCCCTTCTT
T ss_pred HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc--------cCC-------------CccccCCCCccccccccccCc
Confidence 45699999999999999999999999999986411 000 01111110 10345789
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
+|||||||||+|...++.. ..|+||+++++.+|+.+ ....+.+.++.++++ ++++++|||||.....
T Consensus 85 gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~ 152 (334)
T d1p8ja2 85 RHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDG 152 (334)
T ss_dssp CHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred cchhhhhhhhhhccccccc--------cccccccccccchhhcc----ccccchHHHHHHHhhhcCCcEEeCCCCCCCcC
Confidence 9999999999998643222 37999999999999886 234456667777665 5799999999975421
Q ss_pred -CCC--------chHHHHHHHHHhCCcEEEEecCCCCCCCCccc----CCCCceEEecccccccceEEEEEcCCCceeee
Q 045720 290 -FYD--------NGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV----NDAPWMLTVGASTIDRGITISVRLGNQETYDG 356 (745)
Q Consensus 290 -~~~--------~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 356 (745)
... ..+..+...+..+|+++|+||||++....... ...+.+++|++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~------------------- 213 (334)
T d1p8ja2 153 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------------------- 213 (334)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------------------
T ss_pred cccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc-------------------
Confidence 111 11222333556799999999999876543322 2334455555431
Q ss_pred eecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccc
Q 045720 357 EALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQR 436 (745)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 436 (745)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCc-----cEEee
Q 045720 437 NSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL-----NIIAA 511 (745)
Q Consensus 437 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~-----~I~sa 511 (745)
..+..+.||++|+... .+..+||. .+.+.
T Consensus 214 ----------------------------------------~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~ 247 (334)
T d1p8ja2 214 ----------------------------------------QFGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTD 247 (334)
T ss_dssp ----------------------------------------TTSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEE
T ss_pred ----------------------------------------cCCceeeecccCCccc------cccccccccccccccccc
Confidence 1224455666665441 13444442 24443
Q ss_pred ccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCC
Q 045720 512 WKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGA 591 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~ 591 (745)
... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.......+.........+..||+
T Consensus 248 ~~~---------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~ 318 (334)
T d1p8ja2 248 LRQ---------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGY 318 (334)
T ss_dssp TTT---------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBT
T ss_pred cCC---------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCcc
Confidence 333 47889999999999999999999999999999999999999999886655444444444455678999
Q ss_pred CccCcCCCCC
Q 045720 592 GQVNPSKAND 601 (745)
Q Consensus 592 G~id~~~Al~ 601 (745)
|+||+++||+
T Consensus 319 G~lna~~Av~ 328 (334)
T d1p8ja2 319 GLLDAGAMVA 328 (334)
T ss_dssp CBCCHHHHHH
T ss_pred eEeCHHHHHH
Confidence 9999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-40 Score=352.29 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=205.7
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--CCCCCCCCh
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--SAIDYTGHG 213 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--~~~d~~gHG 213 (745)
+..+|.++++|+||+|||||||||++||+|.++-. ..+.++|.+..+. ...++.+||
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~HG 93 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC---------------------AEGSWDFNDNTNLPKPRLSDDYHG 93 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC---------------------GGGCEETTTTBSCCCCCSTTTTHH
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc---------------------cccccccccCCCccCCCccccccc
Confidence 45699999999999999999999999999986411 1123444433221 445678999
Q ss_pred hHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCC---
Q 045720 214 THTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQF--- 290 (745)
Q Consensus 214 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~--- 290 (745)
|||||+|+|....+. .+.||||+|+|+.+++.. ......++..++.++++. .+|+|+|||......
T Consensus 94 T~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~ 162 (339)
T d2id4a2 94 TRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILS--GDITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQ 162 (339)
T ss_dssp HHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTT--SCCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCB
T ss_pred ceeeecccccccccc--------cccccccccccceEEEee--ccccchHHHHHHHHHHhh-CCEEeccCCCCCCccccc
Confidence 999999998753322 237999999999999875 335677788888877665 499999999753111
Q ss_pred -CC----ch-HHHHHHHHHhCCcEEEEecCCCCCCCCc--ccC--CCCceEEecccccccceEEEEEcCCCceeeeeecc
Q 045720 291 -YD----NG-IAKATFEAIRRGIFVSIAAGNSGPNHYT--LVN--DAPWMLTVGASTIDRGITISVRLGNQETYDGEALW 360 (745)
Q Consensus 291 -~~----~~-~~~a~~~a~~~Gv~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 360 (745)
.. .. ...+...+..+|+++|+||||++..... ++. ..+.+++|+++
T Consensus 163 ~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 218 (339)
T d2id4a2 163 GPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------------------ 218 (339)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------------------
T ss_pred CccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------------------
Confidence 11 11 2223335557999999999998755322 222 22334444432
Q ss_pred cCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccc
Q 045720 361 QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 440 (745)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCC
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA 520 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~ 520 (745)
...+..+.||++|+.. ...++..+||..+.++....
T Consensus 219 -----------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~----- 254 (339)
T d2id4a2 219 -----------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING----- 254 (339)
T ss_dssp -----------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT-----
T ss_pred -----------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC-----
Confidence 1223556778877754 45678899999999877664
Q ss_pred CcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCc-ccCCCCCCCCccccCCCccCcCCC
Q 045720 521 NRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKP-ILDCTRLPADLYAVGAGQVNPSKA 599 (745)
Q Consensus 521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~-~~~~~~~~~~~~~~G~G~id~~~A 599 (745)
..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++..... +.+....+..+..||||+||+.+|
T Consensus 255 ---~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~A 331 (339)
T d2id4a2 255 ---RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKL 331 (339)
T ss_dssp ---CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHH
T ss_pred ---CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCHHHH
Confidence 3789999999999999999999999999999999999999999988644322 222333455667899999999999
Q ss_pred CCC
Q 045720 600 NDP 602 (745)
Q Consensus 600 l~~ 602 (745)
|+.
T Consensus 332 v~~ 334 (339)
T d2id4a2 332 IEM 334 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=5.7e-32 Score=291.36 Aligned_cols=313 Identities=16% Similarity=0.170 Sum_probs=184.9
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhh
Q 045720 141 KDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTA 220 (745)
Q Consensus 141 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGii 220 (745)
.+|++|+||+|||||||||++||+|.+. |+.. .....+. .+.+.++|+|||++++
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~--------------~~~~~~~---~~~~~~g~~~~~~g~~ 72 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL--------------GVSAPQV---VSVSVDGATNQPTGDP 72 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT--------------TCCCCCE---EEEESTTCCCCCCSCT
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc--------------CCCCCCC---ceeCCCCCCCCCCCcc
Confidence 4689999999999999999999999642 1100 0000000 2334567777777776
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh---CCCcEEEeccCCCCCCC---CCch
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE---DGVDVLSLSFGLGLSQF---YDNG 294 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~---~~~~ 294 (745)
++...... .....+.||||+|+|+.+|+.. . ....+.++++++. ++++|||+|||...... +...
T Consensus 73 ~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~-~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ 143 (357)
T d1t1ga_ 73 NGPDGEVE----LDIEVAGALAPGAKIAVYFAPN-T----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAA 143 (357)
T ss_dssp TSTHHHHH----HHHHHHHHHSTTSEEEEEECCS-S----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHH
T ss_pred cccccccc----CCcccceeecccCeEEEEeccc-C----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHH
Confidence 54421100 0011247999999999999986 2 3445566666654 58999999999753221 2234
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCC--------cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCC
Q 045720 295 IAKATFEAIRRGIFVSIAAGNSGPNHY--------TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIP 366 (745)
Q Consensus 295 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~--------~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 366 (745)
+......+..+|+++|+|+||+|.... ..+...+++++|++....... +. ....+.+....
T Consensus 144 ~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~-~~~~~~~~~~~-- 212 (357)
T d1t1ga_ 144 MNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GR-IERETVWNDGP-- 212 (357)
T ss_dssp HHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SC-EEEEEECBCHH--
T ss_pred HHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cc-cccceeccccc--
Confidence 556666777899999999999975432 233566788888875322110 00 00000000000
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEech
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSH 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
. .... .+ +.
T Consensus 213 ----~-~~~~--------------------------------------~~--g~-------------------------- 221 (357)
T d1t1ga_ 213 ----D-GGST--------------------------------------GG--GV-------------------------- 221 (357)
T ss_dssp ----H-HCBC--------------------------------------CC--EE--------------------------
T ss_pred ----c-cccc--------------------------------------cC--Cc--------------------------
Confidence 0 0000 00 00
Q ss_pred hhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccE--EeeccCCCCCCCCccc
Q 045720 447 AVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNI--IAAWKTTVDPLANRVY 524 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I--~sa~~~~~~~~~~~~~ 524 (745)
+..+ ............+++.+++. .++.|||+.+++... .+.... +
T Consensus 222 ------------------s~~~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~---------~ 269 (357)
T d1t1ga_ 222 ------------------SRIF---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID---------G 269 (357)
T ss_dssp ------------------CSSS---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET---------T
T ss_pred ------------------cccc---ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC---------C
Confidence 0000 00001223456677777776 689999999987654 444444 4
Q ss_pred ceeeecCCcchhHHHHHHHHHHHhhCCC---CCHHHHHHHhhcccccccCCCCcccC----CCCCCCCccccCCCccCcC
Q 045720 525 TFDIVSGTSMACPHLSGVAALLKSAHPN---WSHAAIKSAMMTTADTVNLEGKPILD----CTRLPADLYAVGAGQVNPS 597 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~---ls~~~vk~~L~~TA~~~~~~~~~~~~----~~~~~~~~~~~G~G~id~~ 597 (745)
.|..++|||||||||||++|||+|+++. +...+++.+...+.+++......... ....+.++..+|||++|+.
T Consensus 270 ~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~~n~~ 349 (357)
T d1t1ga_ 270 ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGI 349 (357)
T ss_dssp EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCEECHH
T ss_pred ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCchhhHH
Confidence 8999999999999999999999998753 23444544443333333111111100 0135567889999999987
Q ss_pred CCCC
Q 045720 598 KAND 601 (745)
Q Consensus 598 ~Al~ 601 (745)
++++
T Consensus 350 ~~~~ 353 (357)
T d1t1ga_ 350 RLLQ 353 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=3.6e-29 Score=271.00 Aligned_cols=165 Identities=12% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCCCCCeEEEEEcCCCCCC-CCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhc
Q 045720 143 SNFGKGVIIGVLDTGITPG-HPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAA 221 (745)
Q Consensus 143 g~~G~Gv~VaVIDtGid~~-Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiia 221 (745)
..+|+||+|||||+|.++. |+||.. +.... + .......... ...+..+||||+++++.
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~~~--~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~e 79 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------FTSAN--G-----LASVNTQTIQ-----TGSSNGDYSDDQQGQGE 79 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------HHHHT--T-----CCCCCEEEEE-----CSCTTSCCCBCHHHHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------HHHhc--C-----CCCCCCCeec-----CCCCCCCCCCCCCccee
Confidence 4589999999999998754 666641 00000 0 0000000000 23456789999999987
Q ss_pred ccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCC----CCCCCchHH
Q 045720 222 GNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGL----SQFYDNGIA 296 (745)
Q Consensus 222 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~----~~~~~~~~~ 296 (745)
+.... ..+.||||+|+|+.++++.........+++++|+||++ ++++|||+|||... .....+.+.
T Consensus 80 ~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~ 150 (369)
T d1ga6a_ 80 WDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAED 150 (369)
T ss_dssp HHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHH
T ss_pred ecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHH
Confidence 65211 12479999999999999983344778889999999986 57999999999753 123345566
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCC-------------cccCCCCceEEecccc
Q 045720 297 KATFEAIRRGIFVSIAAGNSGPNHY-------------TLVNDAPWMLTVGAST 337 (745)
Q Consensus 297 ~a~~~a~~~Gv~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~ 337 (745)
.++.++..+|++||+||||+|.... ..++..+++++|+++.
T Consensus 151 ~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 151 RIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred HHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 7777888999999999999986432 2345678899998753
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.80 E-value=8e-09 Score=81.33 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=55.6
Q ss_pred CceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEEcce
Q 045720 40 LQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARVENT 119 (745)
Q Consensus 40 ~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~~ 119 (745)
+++|||.||++..........+.+. ..+.++.+.|+ .|+||++++++++++.|+++|+|++||+|+.
T Consensus 1 e~~YIV~fK~~~~~~~~~~~~~~v~------------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v 67 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSSAKKKDVIS------------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHI 67 (71)
T ss_dssp CEEEEEEECSSSSCCSHHHHHHHHH------------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHH------------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcE
Confidence 3689999999873333333333333 33778999998 6999999999999999999999999999998
Q ss_pred ecc
Q 045720 120 LHL 122 (745)
Q Consensus 120 ~~~ 122 (745)
++.
T Consensus 68 ~~a 70 (71)
T d1scjb_ 68 AHE 70 (71)
T ss_dssp EEE
T ss_pred EEc
Confidence 764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.56 E-value=5.4e-08 Score=76.69 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred CceEEEEeCCCCCCChHHHHHhhchhccccCCCCcccCCCccEEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eEEEEE
Q 045720 40 LQTYIIYVQKPEQGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYK-NVISGFAARLTAEEVKAMETKKG--FISARV 116 (745)
Q Consensus 40 ~~~yIV~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~-~~~~g~s~~~~~~~i~~L~~~p~--V~~V~~ 116 (745)
.++|||.||++.... .+.+.+.... ..+.++.+.|. +.|+||+++++++.+++|+++|+ |++||+
T Consensus 2 aG~YIVvlK~~~~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~ 69 (72)
T d1v5ib1 2 AGKFIVIFKNDVSED---KIRETKDEVI---------AEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEE 69 (72)
T ss_dssp CEEEEEEECTTCCHH---HHHHHHHHHH---------HHTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEE
T ss_pred CccEEEEECCCCCHH---HHHHHHHHHH---------hcCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECC
Confidence 389999999986222 2222222221 22456667776 58999999999999999999665 999999
Q ss_pred cc
Q 045720 117 EN 118 (745)
Q Consensus 117 ~~ 118 (745)
|.
T Consensus 70 D~ 71 (72)
T d1v5ib1 70 DH 71 (72)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.40 E-value=0.018 Score=47.56 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=61.7
Q ss_pred CCCceeeeecCCcCEEEEEEEEecCCCcee-EEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEE
Q 045720 648 LNYPSFSIKLGYSPQTYHRTVTNVGKAKSF-YTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAY 726 (745)
Q Consensus 648 ln~ps~~~~~~~~~~~~~~tv~N~g~~~~t-y~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~ 726 (745)
+..|++.+.- +...+++++|+|.|+...+ -++....|.|=+++. ....+.+ |++++++++++++.....+.|.=.
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~--~~~~L~p-G~s~~~~~~Vt~p~~a~~G~Y~i~ 81 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPLMP-GRQAKGQVTITVPAGTTPGRYRVG 81 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCBCT-TCEEEEEEEEECCTTCCCEEEEEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccC--cceeeCC-CCcEEEEEEEECCCCCCCceEEEE
Confidence 4456655443 3479999999999988754 467778899987754 4456777 999999999999876443344334
Q ss_pred EEEEcCceeEEeeEE
Q 045720 727 LSWVSDKYTVKSPIA 741 (745)
Q Consensus 727 ~~~~~~~~~v~~P~~ 741 (745)
++.++++......|-
T Consensus 82 ~~a~~~~~~~s~t~t 96 (103)
T d1w8oa1 82 ATLRTSAGNASTTFT 96 (103)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEeCCcceEEEEE
Confidence 666665544444443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.083 Score=48.21 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=49.1
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-------------cc--------------------
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-------------LI-------------------- 434 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-------------~~-------------------- 434 (745)
..+++|||+|+++|.+ +.+++.+||.|+|+|.+..+.... ..
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 3578999999999987 888999999999999864321100 00
Q ss_pred -cccccceEEechhhHHHHHHHHH
Q 045720 435 -QRNSLPNVRVSHAVSESIKAYIN 457 (745)
Q Consensus 435 -~~~~~p~~~i~~~~g~~l~~~~~ 457 (745)
.-..||+.-|+..|++.|++.|.
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 01248999999999999988764
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.98 E-value=0.39 Score=45.01 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.2
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecC
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDE 426 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~ 426 (745)
..+++|||+|+++|.+ +.+++..||.|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 4589999999999887 788999999999999873
|