Citrus Sinensis ID: 045729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEcccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEcccccccccccccEEEccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHcccccccccccccccccccccccEEEEEEEEEcEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mrlsiffvPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLtnnwsisypictwigiscgsrhqrvtalnlsdiglggtipphlgnlTFLVSLDVAhnnfrghlpnELGQLRRLRFIRFGfnklsgsipTWIGVLSKLQTLRlynnsftgpipnslfnlskLEVFNAMYNvidgnipsrignfsspfilNLGYNNLQGLLTIFGRLRLL
Flexible Loop (DISEMBL)
MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFnklsgsiptWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL
Low Complexity Region (SEG)
MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFIlnlgynnlqgllTIFGRLRLL
Disordered region (IsUnstruct)
**LSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR**
Disordered Region (DISOPRED)
***SIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRS**T**WSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL
Disordered Region (DISEMBL)
MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL
Disordered Region (DISPRO)
*RLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL***
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.697	0.150	0.418	3e-34
C0LGT6	1031	LRR receptor-like serine/	no	no	0.926	0.195	0.372	4e-31
Q9SD62	1025	Putative receptor-like pr	no	no	0.816	0.173	0.351	5e-26
Q42371	976	LRR receptor-like serine/	no	no	0.821	0.183	0.368	6e-24
P93194	1109	Receptor-like protein kin	N/A	no	0.816	0.160	0.355	4e-22
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.922	0.182	0.313	7e-22
O49318	1124	Probable leucine-rich rep	no	no	0.912	0.177	0.337	9e-22
O65440	992	Leucine-rich repeat recep	no	no	0.935	0.205	0.336	4e-21
Q9FK10	601	Probable inactive recepto	no	no	0.793	0.287	0.365	8e-21
Q9FL63	614	Inactive leucine-rich rep	no	no	0.908	0.322	0.354	4e-20

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 112/177 (63%)

Query: 31  ADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIP 90
            D+ ALL FK++V + + V+ ++W+ S+P+C W G++CG +++RVT L L  + LGG I 
Sbjct: 24  TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVIS 83

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150
           P +GNL+FLVSLD+  N F G +P E+GQL RL ++  G N L G IP  +   S+L  L
Sbjct: 84  PSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNL 143

Query: 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
           RL +N   G +P+ L +L+ L   N   N + G +P+ +GN +    L L +NNL+G
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 121/212 (57%), Gaps = 10/212 (4%)

Query: 1   MRLS---IFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVD--YRSVLTNNWS 55
           M+LS   +F    L LQ  I A    +       D  ALL FK++V +   R VL + W+
Sbjct: 1   MKLSFSLVFNALTLLLQVCIFAQARFSN----ETDMQALLEFKSQVSENNKREVLAS-WN 55

Query: 56  ISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN 115
            S P C WIG++CG R +RV +LNL    L G I P +GNL+FL  L++A N+F   +P 
Sbjct: 56  HSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQ 115

Query: 116 ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN 175
           ++G+L RL+++   +N L G IP+ +   S+L T+ L +N     +P+ L +LSKL + +
Sbjct: 116 KVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILD 175

Query: 176 AMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
              N + GN P+ +GN +S   L+  YN ++G
Sbjct: 176 LSKNNLTGNFPASLGNLTSLQKLDFAYNQMRG 207

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 24/202 (11%)

Query: 31  ADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIP 90
            D+ ALL FK++V +   V+  +W+ S P+C+W G+ CG +H+RVT ++L  + L G + 
Sbjct: 39  TDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVS 98

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR-----FG---------------- 129
           P +GNL+FL SL++A N F G +P+E+G L RL+++      FG                
Sbjct: 99  PFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTL 158

Query: 130 ---FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186
               N L   +P   G LSKL  L L  N+ TG  P SL NL+ L++ + +YN I+G IP
Sbjct: 159 DLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIP 218

Query: 187 SRIGNFSSPFILNLGYNNLQGL 208
             I          +  N   G+
Sbjct: 219 GDIARLKQMIFFRIALNKFNGV 240

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 8/187 (4%)

Query: 6   FFVPMLFLQYLIMASLAMTTLNNLTADQSA-LLAFKARVVDYRSVLTNNW--SISYPICT 62
            F  ++ L +L   SL  T    +T+++ A LL  K    D  +VL + W  S S   C 
Sbjct: 3   LFRDIVLLGFLFCLSLVAT----VTSEEGATLLEIKKSFKDVNNVLYD-WTTSPSSDYCV 57

Query: 63  WIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRR 122
           W G+SC +    V ALNLSD+ L G I P +G+L  L+S+D+  N   G +P+E+G    
Sbjct: 58  WRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSS 117

Query: 123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID 182
           L+ +   FN+LSG IP  I  L +L+ L L NN   GPIP++L  +  L++ +   N + 
Sbjct: 118 LQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLS 177

Query: 183 GNIPSRI 189
           G IP  I
Sbjct: 178 GEIPRLI 184

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 2/180 (1%)

Query: 29  LTADQSALLAFKARVVDYRSVLTNNWSISYPI-CTWIGISCGSRHQRVTALNLSDIGLGG 87
           L +D +ALL+         S +T +W+ S    C+W+G+ C  R Q V  LNLS  G+ G
Sbjct: 24  LNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVEC-DRRQFVDTLNLSSYGISG 82

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 147
              P + +L  L  + ++ N F G +P++LG    L  I    N  +G+IP  +G L  L
Sbjct: 83  EFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNL 142

Query: 148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
           + L L+ NS  GP P SL ++  LE      N ++G+IPS IGN S    L L  N   G
Sbjct: 143 RNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSG 202

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 35/236 (14%)

Query: 1   MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTN-NWSISYP 59
           M+L++FF+        ++  L ++    L  +   LL  K++ VD +  L N N + S P
Sbjct: 6   MKLAVFFI-------SLLLILLISETTGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP 58

Query: 60  ICTWIGISCG--SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNEL 117
            C W G+ C   S    V +LNLS + L G + P +G L  L  LD+++N   G +P E+
Sbjct: 59  -CGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEI 117

Query: 118 GQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN---------------------- 155
           G    L  ++   N+  G IP  IG L  L+ L +YNN                      
Sbjct: 118 GNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTY 177

Query: 156 --SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209
             + +G +P S+ NL +L  F A  N+I G++PS IG   S  +L L  N L G L
Sbjct: 178 SNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGEL 233

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 32/231 (13%)

Query: 11  LFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWS-ISYPICTWIGISCG 69
           +F+  L + +L + T  +L +D   LL  K R         +NW+ I    C WIG++C 
Sbjct: 15  MFVGVLFLLTLLVWTSESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCS 74

Query: 70  SRHQR-------VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG---- 118
           S+          VT+L+LS + L G + P +G L  LV L++A+N   G +P E+G    
Sbjct: 75  SQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSK 134

Query: 119 --------------------QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 158
                               +L +LR      NKLSG +P  IG L  L+ L  Y N+ T
Sbjct: 135 LEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLT 194

Query: 159 GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209
           GP+P SL NL+KL  F A  N   GNIP+ IG   +  +L L  N + G L
Sbjct: 195 GPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGEL 245

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 7/211 (3%)

Query: 2   RLSIFFVPMLFLQYLIMASLAMTTLN-NLTADQSALLAFKARVVDYRSVLTNNWSISY-- 58
           ++  FF+ +  +  L+ +SL ++ LN +L    + L++ K     Y   L ++W+I    
Sbjct: 4   KIFTFFLILSSISPLLCSSL-ISPLNLSLIRQANVLISLKQSFDSYDPSL-DSWNIPNFN 61

Query: 59  PICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNEL 117
            +C+W G+SC + +Q +T L+LS++ + GTI P +  L+  LV LD++ N+F G LP E+
Sbjct: 62  SLCSWTGVSCDNLNQSITRLDLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEI 121

Query: 118 GQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNA 176
            +L  L  +    N   G + T     +++L TL  Y+NSF G +P SL  L++LE  + 
Sbjct: 122 YELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDL 181

Query: 177 MYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
             N  DG IP   G+F S   L+L  N+L+G
Sbjct: 182 GGNYFDGEIPRSYGSFLSLKFLSLSGNDLRG 212

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 27  NNLTADQSALLAFKARVVDYRSVLTNNWSISYPICT-WIGISCGSRHQRVTALNLSDIGL 85
             +  D+  LL F   +    S+   NWS S  ICT W G++C S H  V AL+L+  GL
Sbjct: 21  ETIKEDKHTLLQFVNNINHSHSL---NWSPSLSICTKWTGVTCNSDHSSVDALHLAATGL 77

Query: 86  GGTIP----PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI 141
            G I       L NL FL+   ++ NN  G  P  L  L+ L  ++  FN+ SG +P+ +
Sbjct: 78  RGDIELSIIARLSNLRFLI---LSSNNISGTFPTTLQALKNLTELKLDFNEFSGPLPSDL 134

Query: 142 GVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLG 201
               +LQ L L NN F G IP+S+  L+ L   N  YN   G IP    +     +LNL 
Sbjct: 135 SSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLAYNKFSGEIPDL--HIPGLKLLNLA 192

Query: 202 YNNLQG 207
           +NNL G
Sbjct: 193 HNNLTG 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 8/206 (3%)

Query: 4   SIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICT- 62
           S  F  +LFL +   ++L      +L  D+ ALL F   ++  RS+    W+ S P+CT 
Sbjct: 6   SFIFYFVLFL-FFGSSALYSQVTGDLAGDRQALLDFLNNIIHPRSLA---WNTSSPVCTT 61

Query: 63  WIGISCGSRHQRVTALNLSDIGLGGTIPP-HLGNLTFLVSLDVAHNNFRGHLPNELGQLR 121
           W G++C     RVTAL+L    L G IPP  +  L+ L  L +  N  RG  P +  QL+
Sbjct: 62  WPGVTCDIDGTRVTALHLPGASLLGVIPPGTISRLSELQILSLRSNGLRGPFPIDFLQLK 121

Query: 122 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVI 181
           +L+ I  G N+ SG +P+     + L  L LY+N F G IP    NL+ L   N   N  
Sbjct: 122 KLKAISLGNNRFSGPLPSDYATWTNLTVLDLYSNRFNGSIPAGFANLTGLVSLNLAKNSF 181

Query: 182 DGNIPSRIGNFSSPFILNLGYNNLQG 207
            G IP    N      LN   NNL G
Sbjct: 182 SGEIPDL--NLPGLRRLNFSNNNLTG 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
255583729	383	serine-threonine protein kinase, plant-t	0.903	0.514	0.492	9e-45
224115338	255	predicted protein [Populus trichocarpa]	0.949	0.811	0.449	3e-44
449500845	982	PREDICTED: probable LRR receptor-like se	1.0	0.221	0.429	1e-43
359483198	1087	PREDICTED: probable LRR receptor-like se	0.922	0.184	0.490	8e-41
147773168	362	hypothetical protein VITISV_016304 [Viti	0.844	0.508	0.510	1e-40
449465016	1092	PREDICTED: probable LRR receptor-like se	0.899	0.179	0.451	2e-39
356510768	1214	PREDICTED: probable LRR receptor-like se	0.885	0.158	0.441	3e-38
255583725	973	serine-threonine protein kinase, plant-t	0.912	0.204	0.463	3e-38
224072373	1067	predicted protein [Populus trichocarpa]	0.866	0.177	0.468	4e-38
224072371	230	predicted protein [Populus trichocarpa]	0.866	0.821	0.468	8e-38

>gi|255583729|ref|XP_002532618.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527674|gb|EEF29784.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 98/199 (49%), Positives = 130/199 (65%), Gaps = 2/199 (1%)

Query: 10  MLFLQYLIMASLAMTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISYPICTWIGISC 68
           ++ L Y   ASL +  + NL  DQ  LLA K R++ D  ++L  NWS +  +CTW+G++C
Sbjct: 12  IMMLLYSFFASL-VEGVTNLATDQDGLLALKLRLIRDPNNLLATNWSTTTSVCTWVGVTC 70

Query: 69  GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRF 128
           G+RH RV AL+LSD+GL GT+PPHLGNL+FLV +   +N+F G LPNEL +LRR++    
Sbjct: 71  GARHGRVAALDLSDMGLTGTVPPHLGNLSFLVFISFYNNSFHGSLPNELSKLRRMKTFWL 130

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
             N  SG IP+W+G  ++LQ L L  N FTG IP S FNLSKL  F+   N + G IP  
Sbjct: 131 TKNYFSGEIPSWLGSFARLQQLSLGFNKFTGVIPVSFFNLSKLNFFDLSSNKLQGYIPKA 190

Query: 189 IGNFSSPFILNLGYNNLQG 207
           IGN +S  IL+L  NN  G
Sbjct: 191 IGNLNSLRILSLEKNNFSG 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115338|ref|XP_002317007.1| predicted protein [Populus trichocarpa] gi|222860072|gb|EEE97619.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 133/209 (63%), Gaps = 2/209 (0%)

Query: 1   MRLSIFFVPM-LFLQYLIMASLAMTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISY 58
           MR   F +P  + L    + +L    + ++T DQ ALLA K  +V D +++LT NW+ + 
Sbjct: 1   MRNGCFLIPFTVILWSSFVVTLVANRVTSITTDQDALLALKDHIVNDPQNLLTTNWTATT 60

Query: 59  PICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG 118
            +C W+G++CG+RH+RV AL LS +GL GTIPPH GNL+FLV     +N+FRG LP+EL 
Sbjct: 61  SVCDWVGVTCGTRHRRVRALKLSHMGLTGTIPPHFGNLSFLVFASFYNNSFRGSLPDELA 120

Query: 119 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY 178
           +LRRL++     N   G IP+W+G  ++L TL L NNSFTG IP SLF+LS+L+  +   
Sbjct: 121 KLRRLKYFSIQKNYFGGEIPSWLGSFTRLHTLSLANNSFTGAIPPSLFHLSELDGLDLSN 180

Query: 179 NVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
           N + G+IP  IG  S   +L L +  L G
Sbjct: 181 NDLQGHIPREIGKLSKLRLLYLRHTGLSG 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISYP 59
           M  + FF  + F  Y+++A+++M    N+T DQ+ALLA +A +  D   ++TN+WS +  
Sbjct: 1   MEKNCFFSSLAFFSYIVIATISMAFAQNITTDQAALLALRAHITSDPFGIITNHWSATTS 60

Query: 60  ICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQ 119
           +C W+GI CG +H+RVT+LN S +GL GT PP +G L+FL  + + +N+F   LP EL  
Sbjct: 61  VCNWVGIICGVKHKRVTSLNFSFMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTN 120

Query: 120 LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179
           L RL+ +  G N  SG IPTWIG L +++ L LY N F+G IP SLFNL+ L + N   N
Sbjct: 121 LPRLKMMSLGNNNFSGEIPTWIGRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQEN 180

Query: 180 VIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
            + G+IP  IGN +    L L  N L  + T  G L+ L
Sbjct: 181 QLSGSIPREIGNLTLLQDLYLNSNQLTEIPTEIGTLQSL 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 133/206 (64%), Gaps = 5/206 (2%)

Query: 3   LSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARV-VDYRSVLTNNWSISYPIC 61
           LS   + +  +Q+   A +AM+ L+N T DQS+LLA KA + +D   VL  NWS     C
Sbjct: 7   LSSTIISVFIVQF--SACVAMS-LSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFC 62

Query: 62  TWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLR 121
            WIG+SC ++ QRV AL+LS++GL GTIPP LGNL+FLVSLD++ NNF G +P E+GQL 
Sbjct: 63  EWIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLT 122

Query: 122 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVI 181
            L  +   +N LSG IP   G L++LQ+L L NNSFTG IP S+ N+S LE      N +
Sbjct: 123 SLLSMNLQYNLLSGQIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHL 182

Query: 182 DGNIPSRIGNFSSPFILNLGYNNLQG 207
            GNIP  IG  S+  IL++  N L G
Sbjct: 183 QGNIPEEIGKLSTMKILDIQSNQLVG 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773168|emb|CAN71566.1| hypothetical protein VITISV_016304 [Vitis vinifera]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 123/186 (66%), Gaps = 2/186 (1%)

Query: 25  TLNNLTADQSALLAFKARV-VDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDI 83
           +L+N T DQS+LLA KA + +D   VL  NWS     C W+G+SC ++ QRV AL+LS++
Sbjct: 2   SLSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWMGVSCNAQQQRVIALDLSNL 60

Query: 84  GLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV 143
           GL GTIPP LGNL+FLVSLD++ NNF G +P E+GQL  L  +   +N LSG IP   G 
Sbjct: 61  GLSGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPPSFGN 120

Query: 144 LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN 203
           L++LQ+L L NNSFTG IP S+ N+S LE      N + GNIP  IG  SS  IL++  N
Sbjct: 121 LNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSSMKILDIQSN 180

Query: 204 NLQGLL 209
            L G +
Sbjct: 181 QLVGAI 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 1/197 (0%)

Query: 23  MTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLS 81
           M    N+T DQ+ALLA +A +  D   + TNNWS +  +C W+GI CG +H+RVT+LN S
Sbjct: 1   MAFAQNITTDQAALLALRAHITSDPFGITTNNWSATTSVCNWVGIICGVKHKRVTSLNFS 60

Query: 82  DIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI 141
            +GL GT PP +G L+FL  + + +N+F   LP EL  L RL+ +  G N  SG IPTWI
Sbjct: 61  FMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEIPTWI 120

Query: 142 GVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLG 201
           G L +++ L LY N F+G IP SLFNL+ L + N   N + G+IP  IGN +    L L 
Sbjct: 121 GRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPREIGNLTLLQDLYLN 180

Query: 202 YNNLQGLLTIFGRLRLL 218
            N L  + T  G L+ L
Sbjct: 181 SNQLTEIPTEIGTLQSL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 14  QYLIMASLAMTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISYPICTWIGISCGSRH 72
           Q L+  +LA++   N T D+ ALLA K+ +  D  + LT+NWS +  +C W+G++C + H
Sbjct: 17  QCLMALTLALSG-TNFTTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYH 75

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
            RV  LNL D+ L G +P HLGNLTFL  LD+  N F G LP EL QL RL+F+   +N+
Sbjct: 76  GRVRTLNLGDMSLSGIMPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNE 135

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
            SG++  WIG LS L+ L L NN F G IP S+ NL+ LE+ +   N I G IP  +G  
Sbjct: 136 FSGNVSEWIGGLSTLRYLNLGNNDFGGFIPKSISNLTMLEIMDWGNNFIQGTIPPEVGKM 195

Query: 193 SSPFILNLGYNNLQG 207
           +   +L++  N L G
Sbjct: 196 TQLRVLSMYSNRLSG 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583725|ref|XP_002532616.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527672|gb|EEF29782.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 10  MLFLQYLIMASLAMTTLNNLTADQSALLAFKARVV-DYRSVLTNNWSISYPICTWIGISC 68
           M+ L Y    SL +  + N++ DQ ALLA K R+V D  S+LT NWS +  +CTWIG++C
Sbjct: 14  MMMLFYSFFTSL-VDGVTNISTDQDALLALKVRIVGDPNSLLTTNWSTATSVCTWIGVTC 72

Query: 69  GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLV--SLDVAHNNFRGHLPNELGQLRRLRFI 126
           G+RH RVTALNLS +GL GTIPPHLGNL+FLV   L++    + G +P  L  L +L   
Sbjct: 73  GARHNRVTALNLSHMGLAGTIPPHLGNLSFLVFGCLNMFAVLYIGVIPTSLFNLSKLSIF 132

Query: 127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186
               N L G IP  IG L  L+ L L  N F+  IP+S+FN+S LE  +   N   G IP
Sbjct: 133 YLSSNNLQGYIPEAIGNLYSLRLLSLEKNEFSDSIPSSIFNISSLEQIDFSNNRFSGIIP 192

Query: 187 SRIGNFSSPFILNLGYNNLQGLL 209
             IGN ++  ++NLG N L G++
Sbjct: 193 DEIGNLANLELINLGVNRLAGVV 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072373|ref|XP_002303705.1| predicted protein [Populus trichocarpa] gi|222841137|gb|EEE78684.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 128/190 (67%), Gaps = 1/190 (0%)

Query: 18  MASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTA 77
           MA  AM  + N+TADQ+ALLA KA + D  ++L NNWS +  +C+WIG++CG++  RV+ 
Sbjct: 1   MAYSAME-VTNVTADQTALLALKAHLTDPHNILPNNWSTTASVCSWIGVTCGAQRDRVSG 59

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           LNLS + L G IP  +GNL+FL  L + +NNF+G LPNEL +L  L ++ FGFN  +G I
Sbjct: 60  LNLSHMSLSGYIPSEIGNLSFLSFLSIRNNNFQGSLPNELARLLHLEYLDFGFNSFTGDI 119

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  +G L KL++L L  N F G +P SL+N+S L+  N  YN + G +PS I + SS + 
Sbjct: 120 PPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTINISYNQLHGFMPSSIFSRSSLYT 179

Query: 198 LNLGYNNLQG 207
           ++L +N+L G
Sbjct: 180 IDLSFNHLSG 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072371|ref|XP_002303704.1| predicted protein [Populus trichocarpa] gi|222841136|gb|EEE78683.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 128/190 (67%), Gaps = 1/190 (0%)

Query: 18  MASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTA 77
           MA  AM  + N+TADQ+ALLA KA + D  ++L NNWS +  +C+WIG++CG++  RV+ 
Sbjct: 1   MAYSAME-VTNVTADQTALLALKAHLTDPHNILPNNWSTTASVCSWIGVTCGAQRDRVSG 59

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           LNLS + L G IP  +GNL+FL  L + +NNF+G LPNEL +L  L ++ FGFN  +G I
Sbjct: 60  LNLSHMSLSGYIPSEIGNLSFLSFLSIRNNNFQGSLPNELARLLHLEYLDFGFNSFTGDI 119

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  +G L KL++L L  N F G +P SL+N+S L+  N  YN + G +PS I + SS + 
Sbjct: 120 PPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTINISYNQLHGFMPSSIFSRSSLYT 179

Query: 198 LNLGYNNLQG 207
           ++L +N+L G
Sbjct: 180 IDLSFNHLSG 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.834	0.180	0.4	5.9e-31
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.844	0.181	0.361	2.6e-30
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.880	0.186	0.377	1.1e-28
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.825	0.178	0.369	9.6e-28
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.747	0.159	0.380	5.5e-27
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.729	0.195	0.407	3.9e-25
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.816	0.182	0.370	1.7e-23
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.839	0.306	0.333	4.6e-23
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.825	0.162	0.349	9.2e-23
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.876	0.192	0.333	1.3e-22

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 74/185 (40%), Positives = 113/185 (61%)

Query:    11 LFLQYLIMASLAMTTLNNLT--ADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISC 68
             LFL     A + + T +  T   D+ ALL FK++V + + V+ ++W+ S+P+C W G++C
Sbjct:     3 LFLLLAFNALMLLET-HGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTC 61

Query:    69 GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRF 128
             G +++RVT L L  + LGG I P +GNL+FLVSLD+  N F G +P E+GQL RL ++  
Sbjct:    62 GRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDM 121

Query:   129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
             G N L G IP  +   S+L  LRL +N   G +P+ L +L+ L   N   N + G +P+ 
Sbjct:   122 GINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTS 181

Query:   189 IGNFS 193
             +GN +
Sbjct:   182 LGNLT 186

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 68/188 (36%), Positives = 113/188 (60%)

Query:     7 FVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGI 66
             F+ + F  +L++ +   T       D+ ALL FK++V + +  + ++W+ S+P+C W  +
Sbjct:     4 FLLLSFSAHLLLGADGFTD----ETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWV 59

Query:    67 SCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFI 126
             +CG +H+RVT LNL  + LGG + P +GN++FL+SLD++ N F G +P E+G L RL  +
Sbjct:    60 TCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHL 119

Query:   127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186
                FN L G IP  +   S+L  L LY+N     +P+ L +L+KL + +   N + G +P
Sbjct:   120 YMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLP 179

Query:   187 SRIGNFSS 194
               +GN +S
Sbjct:   180 RSLGNLTS 187

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 74/196 (37%), Positives = 113/196 (57%)

Query:     1 MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDY--RSVLTNNWSISY 58
             M+LS   V       L +   A    +N T D  ALL FK++V +   R VL + W+ S 
Sbjct:     1 MKLSFSLVFNALTLLLQVCIFAQARFSNET-DMQALLEFKSQVSENNKREVLAS-WNHSS 58

Query:    59 PICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG 118
             P C WIG++CG R +RV +LNL    L G I P +GNL+FL  L++A N+F   +P ++G
Sbjct:    59 PFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVG 118

Query:   119 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY 178
             +L RL+++   +N L G IP+ +   S+L T+ L +N     +P+ L +LSKL + +   
Sbjct:   119 RLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSK 178

Query:   179 NVIDGNIPSRIGNFSS 194
             N + GN P+ +GN +S
Sbjct:   179 NNLTGNFPASLGNLTS 194

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 9.6e-28, P = 9.6e-28
 Identities = 68/184 (36%), Positives = 110/184 (59%)

Query:    15 YLIMASLAMTTLN--NLT--ADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGS 70
             +L++A  A+  L     T  +D+ ALL  K++V + +    + W+ S+P+C+W  + CG 
Sbjct:     4 FLLLAFNALMQLEAYGFTDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGR 63

Query:    71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130
             +H+RVT L+L  + LGG I P +GNL+FL+ LD+++N+F G +P E+G L RL+++  GF
Sbjct:    64 KHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGF 123

Query:   131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
             N L G IP  +   S+L  L L++N+    +P+ L +L KL       N + G  P  I 
Sbjct:   124 NYLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIR 183

Query:   191 NFSS 194
             N +S
Sbjct:   184 NLTS 187

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 5.5e-27, P = 5.5e-27
 Identities = 62/163 (38%), Positives = 98/163 (60%)

Query:    32 DQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPP 91
             D+ ALL FK++V +   V+  +W+ S P+C+W G+ CG +H+RVT ++L  + L G + P
Sbjct:    40 DKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSP 99

Query:    92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151
              +GNL+FL SL++A N F G +P+E+G L RL+++    N   G IP  +   S L TL 
Sbjct:   100 FVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLD 159

Query:   152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
             L +N     +P    +LSKL + +   N + G  P+ +GN +S
Sbjct:   160 LSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTS 202

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 296 (109.3 bits), Expect = 3.9e-25, P = 3.9e-25
 Identities = 66/162 (40%), Positives = 92/162 (56%)

Query:    32 DQSALLAFKARVVDYRSVLTNNWSISY--PICTWIGISCGSRH-QRVTALNLSDIGLGGT 88
             D+ ALL+FK+ ++        +W+ S     CTW+G+ CG RH  RV  L L    L G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    89 IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 148
             I P LGNL+FL +L ++ N+  G +P EL +L RL+ +   FN LSG IP  +G L+ L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   149 TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
              L L NN+ +G IP+SL  L+ L       N + G+IPS  G
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFG 195

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 69/186 (37%), Positives = 101/186 (54%)

Query:     7 FVPMLFLQYLIMASLAMTTLNNLTADQSA-LLAFKARVVDYRSVLTNNW--SISYPICTW 63
             F  ++ L +L   SL  T    +T+++ A LL  K    D  +VL + W  S S   C W
Sbjct:     4 FRDIVLLGFLFCLSLVAT----VTSEEGATLLEIKKSFKDVNNVLYD-WTTSPSSDYCVW 58

Query:    64 IGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRL 123
              G+SC +    V ALNLSD+ L G I P +G+L  L+S+D+  N   G +P+E+G    L
Sbjct:    59 RGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSL 118

Query:   124 RFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG 183
             + +   FN+LSG IP  I  L +L+ L L NN   GPIP++L  +  L++ +   N + G
Sbjct:   119 QNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSG 178

Query:   184 NIPSRI 189
              IP  I
Sbjct:   179 EIPRLI 184

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 64/192 (33%), Positives = 101/192 (52%)

Query:     3 LSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNW----SISY 58
             L +F + +LF  ++ +  ++++ LN+   D   LL+ +  +      LT+ W    S + 
Sbjct:     4 LGLFQILLLFCLFVSVRIVSVSCLNS---DGLTLLSLRKHLDKVPPELTSTWKTNASEAT 60

Query:    59 PICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG 118
             P C W GI C    ++VT+LN +  G+ G + P +G L  L  LD++ NNF G +P+ LG
Sbjct:    61 P-CNWFGIICDDS-KKVTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLG 118

Query:   119 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY 178
                 L +I    N  SG +P  +G L  L  L LY+NS TG +P SLF +  L   +  +
Sbjct:   119 NCSSLVYIDLSENSFSGKVPDTLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVEH 178

Query:   179 NVIDGNIPSRIG 190
             N + G IP  +G
Sbjct:   179 NNLTGLIPQNVG 190

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 276 (102.2 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 64/183 (34%), Positives = 93/183 (50%)

Query:    12 FLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPI-CTWIGISCGS 70
             FL +L   S        L +D +ALL+         S +T +W+ S    C+W+G+ C  
Sbjct:     8 FLLFLCSTSSIYAAFA-LNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVEC-D 65

Query:    71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130
             R Q V  LNLS  G+ G   P + +L  L  + ++ N F G +P++LG    L  I    
Sbjct:    66 RRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSS 125

Query:   131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
             N  +G+IP  +G L  L+ L L+ NS  GP P SL ++  LE      N ++G+IPS IG
Sbjct:   126 NSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIG 185

Query:   191 NFS 193
             N S
Sbjct:   186 NMS 188

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 66/198 (33%), Positives = 110/198 (55%)

Query:     2 RLSIFFVPMLFLQYLIMASLAMTTLN-NLTADQSALLAFKARVVDYRSVLTNNWSISY-- 58
             ++  FF+ +  +  L+ +SL ++ LN +L    + L++ K     Y   L ++W+I    
Sbjct:     4 KIFTFFLILSSISPLLCSSL-ISPLNLSLIRQANVLISLKQSFDSYDPSL-DSWNIPNFN 61

Query:    59 PICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNEL 117
              +C+W G+SC + +Q +T L+LS++ + GTI P +  L+  LV LD++ N+F G LP E+
Sbjct:    62 SLCSWTGVSCDNLNQSITRLDLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEI 121

Query:   118 GQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNA 176
              +L  L  +    N   G + T     +++L TL  Y+NSF G +P SL  L++LE  + 
Sbjct:   122 YELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDL 181

Query:   177 MYNVIDGNIPSRIGNFSS 194
               N  DG IP   G+F S
Sbjct:   182 GGNYFDGEIPRSYGSFLS 199

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.4 bits (245), Expect = 9e-24
 Identities = 56/130 (43%), Positives = 72/130 (55%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L+L    L G IP  L NLT L  L +A N   G +P ELGQ++ L++I  G+N LSG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  IG L+ L  L L  N+ TGPIP+SL NL  L+      N + G IP  I +      
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 198 LNLGYNNLQG 207
           L+L  N+L G
Sbjct: 289 LDLSDNSLSG 298

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.6 bits (243), Expect = 2e-23
 Identities = 60/199 (30%), Positives = 106/199 (53%), Gaps = 9/199 (4%)

Query: 10  MLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCG 69
           ++F+ + +  + +M     L      LL+FK+ + D    L+N W+ S  +C W GI+C 
Sbjct: 12  LIFMLFFLFLNFSMLHAEEL----ELLLSFKSSINDPLKYLSN-WNSSADVCLWQGITC- 65

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQL-RRLRFIRF 128
           +   RV +++LS   + G I   +  L ++ ++++++N   G +P+++      LR++  
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
             N  +GSIP   G +  L+TL L NN  +G IPN + + S L+V +   NV+ G IP+ 
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 189 IGNFSSPFILNLGYNNLQG 207
           + N +S   L L  N L G
Sbjct: 184 LTNLTSLEFLTLASNQLVG 202

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 50  LTNNWSISYPICTWIGISCGS-RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN 108
           L+NN  +S PI   I  +  S R+     LNLS+    G+IP   G++  L +LD+++N 
Sbjct: 100 LSNN-QLSGPIPDDIFTTSSSLRY-----LNLSNNNFTGSIPR--GSIPNLETLDLSNNM 151

Query: 109 FRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL 168
             G +PN++G    L+ +  G N L G IP  +  L+ L+ L L +N   G IP  L  +
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 169 SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
             L+     YN + G IP  IG  +S   L+L YNNL G
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 8e-21
 Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L L+   L G IP  LG +  L  + + +NN  G +P E+G L  L  +   +N L+G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P+ +G L  LQ L LY N  +GPIP S+F+L KL   +   N + G IP  +    +  I
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

Query: 198 LNLGYNNLQG----LLTIFGRLRLL 218
           L+L  NN  G     LT   RL++L
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVL 337

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 4e-18
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 3/137 (2%)

Query: 74  RVTALNLSDI---GLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130
            +T+LN  D+    L G IP  LGNL  L  L +  N   G +P  +  L++L  +    
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
           N LSG IP  +  L  L+ L L++N+FTG IP +L +L +L+V     N   G IP  +G
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 191 NFSSPFILNLGYNNLQG 207
             ++  +L+L  NNL G
Sbjct: 354 KHNNLTVLDLSTNNLTG 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 47/123 (38%), Positives = 65/123 (52%)

Query: 85  LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 144
           L G IP  +G LT L  LD+ +NN  G +P+ LG L+ L+++    NKLSG IP  I  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 145 SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204
            KL +L L +NS +G IP  +  L  LE+ +   N   G IP  + +     +L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 205 LQG 207
             G
Sbjct: 344 FSG 346

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 5e-15
 Identities = 43/123 (34%), Positives = 69/123 (56%)

Query: 85  LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 144
           L G IPP + +L  L+SLD++ N+  G +P  + QL+ L  +    N  +G IP  +  L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 145 SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204
            +LQ L+L++N F+G IP +L   + L V +   N + G IP  + +  + F L L  N+
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 205 LQG 207
           L+G
Sbjct: 392 LEG 394

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 4e-14
 Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 6/140 (4%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
           Q++ +L+LSD  L G IP  +  L  L  L +  NNF G +P  L  L RL+ ++   NK
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF---NLSKLEVFNAMYNVIDGNIPSRI 189
            SG IP  +G  + L  L L  N+ TG IP  L    NL KL +F+   N ++G IP  +
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSL 400

Query: 190 GNFSSPFILNLGYNNLQGLL 209
           G   S   + L  N+  G L
Sbjct: 401 GACRSLRRVRLQDNSFSGEL 420

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L+L+     G +P   G+   L +LD++ N F G +P +LG L  L  ++   NKLSG I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  +    KL +L L +N  +G IP S   +  L   +   N + G IP  +GN  S   
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 198 LNLGYNNLQGLL 209
           +N+ +N+L G L
Sbjct: 576 VNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 63  WIGISCG----SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG 118
           W G  C          +  L L + GL G IP  +  L  L S++++ N+ RG++P  LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 119 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 165
            +  L  +   +N  +GSIP  +G L+ L+ L L  NS +G +P +L
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 30/73 (41%), Positives = 46/73 (63%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
           S+ + + ++NLS   + G IPP LG++T L  LD+++N+F G +P  LGQL  LR +   
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 130 FNKLSGSIPTWIG 142
            N LSG +P  +G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 25/161 (15%)

Query: 71  RHQRVTALNLSDIGLGGTIPPHL---GNLTFLV----SLD-----------------VAH 106
           +H  +T L+LS   L G IP  L   GNL  L+    SL+                 +  
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 107 NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF 166
           N+F G LP+E  +L  + F+    N L G I +    +  LQ L L  N F G +P+S F
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-F 472

Query: 167 NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
              +LE  +   N   G +P ++G+ S    L L  N L G
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 7e-12
 Identities = 33/93 (35%), Positives = 53/93 (56%)

Query: 98  FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 157
           F+  L + +   RG +PN++ +LR L+ I    N + G+IP  +G ++ L+ L L  NSF
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 158 TGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
            G IP SL  L+ L + N   N + G +P+ +G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 38/118 (32%), Positives = 61/118 (51%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
              +R+  L+LS     G +P  LG+L+ L+ L ++ N   G +P+EL   ++L  +   
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 130 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
            N+LSG IP     +  L  L L  N  +G IP +L N+  L   N  +N + G++PS
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 9e-11
 Identities = 33/75 (44%), Positives = 44/75 (58%)

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L G IP  I  L  LQ++ L  NS  G IP SL +++ LEV +  YN  +G+IP  +G  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 193 SSPFILNLGYNNLQG 207
           +S  ILNL  N+L G
Sbjct: 490 TSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 74  RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRL-RFIRFGFNK 132
           R+  L L      G IP +LG    L  LD++ NN  G +P  L     L + I F  N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NS 391

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L G IP  +G    L+ +RL +NSF+G +P+    L  +   +   N + G I SR  + 
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 193 SSPFILNLGYNNLQGLL 209
            S  +L+L  N   G L
Sbjct: 452 PSLQMLSLARNKFFGGL 468

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L LS+  L G IP  L +   LVSLD++HN   G +P    ++  L  +    N+LSG I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNS 164
           P  +G +  L  + + +N   G +P++
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 150 LRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209
           L L N    G IPN +  L  L+  N   N I GNIP  +G+ +S  +L+L YN+  G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 74  RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL 133
            +  L+LSD  +  ++P  L NL  L +LD++ N+    LP  L  L  L  +    NK+
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
           S  +P  I +LS L+ L L NNS    + +SL NL  L       N +  ++P  IGN S
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLS 255

Query: 194 SPFILNLGYNNLQGLLTIFGRLRL 217
           +   L+L  N +  + ++     L
Sbjct: 256 NLETLDLSNNQISSISSLGSLTNL 279

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 89  IPPHLGNLTF-LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 147
           IPP +G L   L  LD++ N     LP+ L  L  L+ +   FN LS  +P  +  LS L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188

Query: 148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
             L L  N  +  +P  +  LS LE  +   N I   + S + N  +   L L  N L+ 
Sbjct: 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED 246

Query: 208 LLTIFGRLRLL 218
           L    G L  L
Sbjct: 247 LPESIGNLSNL 257

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 32 DQSALLAFKARVVDYRSVLTNNWSIS-YPICTWIGISC 68
          D+ ALLAFK+ +    S   ++W+ S    C+W G++C
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
PLN03150	623	hypothetical protein; Provisional	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
PLN03150	623	hypothetical protein; Provisional	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.5
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.14
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.81
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.58
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.1
smart00370	26	LRR Leucine-rich repeats, outliers.	93.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.6
smart00370	26	LRR Leucine-rich repeats, outliers.	92.6
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.46
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.97
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.12
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.21

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=4e-27  Score=215.71  Aligned_cols=187  Identities=33%  Similarity=0.617  Sum_probs=132.2

Q ss_pred             ChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc
Q 045729           29 LTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN  108 (218)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~  108 (218)
                      .+.|..||++||+++.++...+.+ |+...++|.|.|+.|+. .++++.|++++|++++.+++.+..+++|+.|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            458999999999999766666666 98878999999999985 4689999999999998888888889999999999998


Q ss_pred             ccccCCcccC-CCCCCcEEEccCccccc----------------------cCchhhcCCCCCCEEEccCCcccCCCCccc
Q 045729          109 FRGHLPNELG-QLRRLRFIRFGFNKLSG----------------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSL  165 (218)
Q Consensus       109 l~~~~p~~~~-~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l  165 (218)
                      +.+.+|..+. .+++|++|++++|.+++                      .+|..++.+++|++|++++|.+.+.+|..+
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            8877876644 66666666666666654                      444445555555555555555555555555


Q ss_pred             cCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          166 FNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       166 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      .++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. ++++++
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            5555666666666665555555566666666666666666554443 444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=8.8e-20  Score=167.51  Aligned_cols=138  Identities=33%  Similarity=0.548  Sum_probs=75.9

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      +++++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            34455555555555555555555555566666555555555555555555555555555555555555555555555555


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++|.+++.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            5555555555555555555555555555555555555555555555555555544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=5.5e-22  Score=142.24  Aligned_cols=134  Identities=28%  Similarity=0.508  Sum_probs=97.1

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..+++.+.+++|.++ .+|+.+..+.+|+.|++.+|+++ ++|..++.+++|+.|+++.|++. .+|.+|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            567888899999988 78888889999999999999998 88888999999999999999988 8899999999999999


Q ss_pred             ccCCcccC-CCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          152 LYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       152 l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      +++|++.. .+|..|..+..|+.|++++|.+. .+|+.++++++|+.|.+++|.+...+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc
Confidence            98888763 24554444444444444444444 44444444444444444444444333

>PLN03150 hypothetical protein; Provisional

Probab=99.78  E-value=3.2e-18  Score=149.68  Aligned_cols=154  Identities=31%  Similarity=0.512  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHhccCCCCccCCCCCCCCCCC-----ccceeeeCCC----CCcEEEEEcCCCCCcccCCcCCCCCCC
Q 045729           28 NLTADQSALLAFKARVVDYRSVLTNNWSISYPIC-----TWIGISCGSR----HQRVTALNLSDIGLGGTIPPHLGNLTF   98 (218)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~----~~~l~~l~l~~~~l~~~~~~~l~~l~~   98 (218)
                      +...|..||..+|.++..+..  .+ |..  ++|     .|.|+.|...    ...++.|+|++|++.|.+|+.+..+++
T Consensus       369 t~~~~~~aL~~~k~~~~~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~  443 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH  443 (623)
T ss_pred             cCchHHHHHHHHHHhcCCccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence            356799999999998864421  24 964  334     7999999531    125889999999999999999999999


Q ss_pred             CCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCC-CCCcEEecc
Q 045729           99 LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL-SKLEVFNAM  177 (218)
Q Consensus        99 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~L~  177 (218)
                      |+.|++++|.+.|.+|..+..+++|+.|++++|+++|.+|..++.+++|++|++++|.++|.+|..+... .++..+++.
T Consensus       444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999887754 467788888


Q ss_pred             cCcccccCC
Q 045729          178 YNVIDGNIP  186 (218)
Q Consensus       178 ~N~l~~~~p  186 (218)
                      +|......|
T Consensus       524 ~N~~lc~~p  532 (623)
T PLN03150        524 DNAGLCGIP  532 (623)
T ss_pred             CCccccCCC
Confidence            887554343

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=1.4e-20  Score=135.00  Aligned_cols=141  Identities=25%  Similarity=0.391  Sum_probs=132.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc-cCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L  150 (218)
                      ..+++++++++|+++ .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|.+.. .+|..|..++.|+-|
T Consensus        55 l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence            578999999999998 89999999999999999999998 899999999999999999999863 688889999999999


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      +++.|.+. .+|..++++.+|+.|.+..|.+- ++|.+++.+..|++|++.+|+++-.+|+++.+.
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~  196 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD  196 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence            99999999 89999999999999999999998 899999999999999999999999999988764

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=2.6e-14  Score=125.25  Aligned_cols=114  Identities=31%  Similarity=0.503  Sum_probs=104.2

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729           98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM  177 (218)
Q Consensus        98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  177 (218)
                      .++.|++++|.+.|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCccCCCC-CCCCEEEccCCcCcccCCC
Q 045729          178 YNVIDGNIPSRIGNF-SSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       178 ~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~  211 (218)
                      +|+++|.+|..++.. .++..+++.+|......|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            999999999988764 4678999999975544444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.53  E-value=1.4e-14  Score=121.31  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=119.8

Q ss_pred             CCCCCCCccceeeeCCC--------------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCC
Q 045729           55 SISYPICTWIGISCGSR--------------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQL  120 (218)
Q Consensus        55 ~~~~~~c~w~gv~c~~~--------------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l  120 (218)
                      ++.+++|.-.-..|+.+              ....+.||+++|.+...-+..|.++++|+++++.+|.++ .+|......
T Consensus        46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s  124 (873)
T KOG4194|consen   46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES  124 (873)
T ss_pred             CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence            45557777666667532              245678999999998777777889999999999999998 888765556


Q ss_pred             CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729          121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL  200 (218)
Q Consensus       121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  200 (218)
                      .+++.|++.+|.++..-.+.+..++.|+++|++.|.++..--..+..-.++++|+|++|.++..-...|..+.+|..|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            67888888888887444556777788888888888887333344555567888888888887555556777777777778


Q ss_pred             cCCcCcccCCC-CCCCCCC
Q 045729          201 GYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       201 ~~N~l~~~~p~-~~~l~~L  218 (218)
                      +.|+++..++. |.+|++|
T Consensus       205 srNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             ccCcccccCHHHhhhcchh
Confidence            88877776665 5555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.53  E-value=1.6e-15  Score=126.83  Aligned_cols=142  Identities=23%  Similarity=0.250  Sum_probs=96.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccc------------------
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKL------------------  133 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l------------------  133 (218)
                      .+++.|+|++|.++..-..+|..+.+|.+|.+++|.++ .+|. .|.++++|+.|++.+|++                  
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            45556666666655444445555555555555555555 3332 344455555555555554                  


Q ss_pred             ------cccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          134 ------SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       134 ------~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                            ...-...|..+.++++|+++.|+++..--.++.++.+|++|++++|.+...-++.|...++|++|+|+.|.++.
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence                  32222346667788888888888875556677889999999999999987778888899999999999999998


Q ss_pred             cCCC-CCCC
Q 045729          208 LLTI-FGRL  215 (218)
Q Consensus       208 ~~p~-~~~l  215 (218)
                      ..+. |..|
T Consensus       332 l~~~sf~~L  340 (873)
T KOG4194|consen  332 LDEGSFRVL  340 (873)
T ss_pred             CChhHHHHH
Confidence            8775 5444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.50  E-value=8.2e-16  Score=129.78  Aligned_cols=72  Identities=26%  Similarity=0.348  Sum_probs=37.7

Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729          143 VLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       143 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      .+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+++ .+....+.+.+|+.|+++.|+++..|..+.+|+
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence            3344444555555555 55666666666666666666665 333333444445555555555554444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.50  E-value=1.7e-16  Score=127.41  Aligned_cols=136  Identities=26%  Similarity=0.361  Sum_probs=93.6

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      ++..+++.+|.+. .+|+....++.|++++..+|-++ .+|+.++.+.+|..|++.+|++. .+| .|..+..|.+++++
T Consensus       161 ~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  161 KLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG  236 (565)
T ss_pred             HHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence            3445555566555 33333333666666666666665 66666777777777777777766 666 46666667777777


Q ss_pred             CCcccCCCCcccc-CCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCC
Q 045729          154 NNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL  215 (218)
Q Consensus       154 ~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l  215 (218)
                      .|.+. .+|.... +++++.+||+.+|+++ ..|.+++.+++|..||+++|.+++.++.+|.|
T Consensus       237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             ccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence            77666 5665554 7778888888888887 77888888888888888888888888777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.49  E-value=5.5e-16  Score=130.79  Aligned_cols=136  Identities=27%  Similarity=0.349  Sum_probs=79.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..++..+|+|.|++. .+|+++.++++|+.|++++|.++ ++.-....+.+|++|++++|+++ .+|..++.++.|+.|.
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence            345666666666666 56666666666666666666666 44444455556666666666666 5666666666666666


Q ss_pred             ccCCccc-CCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          152 LYNNSFT-GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       152 l~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      +.+|+++ ..+|..++.+.+|+++..++|.+. .+|+.++.+.+|+.|.|+.|++...|.+
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPea  357 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEA  357 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhh
Confidence            6555543 135555555555555555555554 4555555555555555555555544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=1.3e-15  Score=122.42  Aligned_cols=134  Identities=30%  Similarity=0.422  Sum_probs=109.8

Q ss_pred             cEEEEEcCCCCCc-----------------------ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC
Q 045729           74 RVTALNLSDIGLG-----------------------GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF  130 (218)
Q Consensus        74 ~l~~l~l~~~~l~-----------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  130 (218)
                      -|+.++++.|++.                       +.+|..++.+++|..|++++|-+. .+|..++.+..|+.++++.
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF  467 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence            3788899888765                       234444666788888888888887 7888888888888888888


Q ss_pred             ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       131 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      |+|. .+|..+..+..++++-.++|++....|..+.++.+|..||+.+|.+. .+|+.+++|.+|++|++.+|++. .|+
T Consensus       468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCH
Confidence            8887 78887777777888777788888555555889999999999999998 89999999999999999999998 454


Q ss_pred             C
Q 045729          211 I  211 (218)
Q Consensus       211 ~  211 (218)
                      +
T Consensus       545 ~  545 (565)
T KOG0472|consen  545 H  545 (565)
T ss_pred             H
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.29  E-value=1.7e-13  Score=119.75  Aligned_cols=128  Identities=27%  Similarity=0.394  Sum_probs=110.7

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      ...++.|.+.+|.++...-+.+.++.+|+.|++++|++. .+|.. +.++..|+.|++++|+++ .+|..+..+..|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            356788899999999887778899999999999999998 77764 678999999999999999 999999999999999


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCc
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      ...+|++. .+| .+..+++|+.+|++.|+++- .+|.... .++|++||+++|.
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            99999998 788 78899999999999999873 3443332 2899999999996

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=4.8e-13  Score=104.34  Aligned_cols=131  Identities=27%  Similarity=0.336  Sum_probs=112.1

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ..++.+|+++|.++ .+..+..-.+.++.|++++|.+. .+.. +..+++|+.||+++|.++ .+..+-..+.+.++|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            56889999999998 78888888899999999999998 5544 788999999999999998 77666678889999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCC--ccCCCCCCCCEEEccCCcCcccCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++|.+. .+ ..+..+.+|..||+++|++. .+.  ..+++++.|+++.|.+|++.+.+.
T Consensus       360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHh-hh-hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccch
Confidence            999887 33 45778899999999999987 332  478999999999999999987654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=4.5e-12  Score=93.40  Aligned_cols=122  Identities=30%  Similarity=0.319  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhh-cCCCCCCEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTL  150 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L  150 (218)
                      .+++.|++++|.++. +. .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            357889999998873 32 344 5788899999999998 554 4777889999999999998 665544 368899999


Q ss_pred             EccCCcccCC-CCccccCCCCCcEEecccCcccccCCc----cCCCCCCCCEEEc
Q 045729          151 RLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIPS----RIGNFSSPFILNL  200 (218)
Q Consensus       151 ~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L  200 (218)
                      ++++|++... .-..+..+++|++|++.+|.++. .+.    .+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            9999988732 12456678899999999998873 332    2456788888874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=1e-11  Score=110.22  Aligned_cols=97  Identities=24%  Similarity=0.435  Sum_probs=43.7

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      .++.|++++|.++ .+|..+.  .+|++|++++|+++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            3444555555444 3333322  34555555555544 3443322  23444555555444 4444332  245555555


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCccc
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      +|.++ .+|..+.  ++|+.|++++|+++
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccc
Confidence            55554 3444332  24555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.24  E-value=1.5e-11  Score=109.11  Aligned_cols=104  Identities=26%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             CCCEEEccCCcccccCCcccCC-----------------CCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCC
Q 045729           98 FLVSLDVAHNNFRGHLPNELGQ-----------------LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP  160 (218)
Q Consensus        98 ~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  160 (218)
                      +|+.|++++|+++ .+|.....                 ..+|+.|++++|.++ .+|..   .++|+.|++++|.++ .
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s  416 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S  416 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence            5677777777776 44432111                 124566666666666 44532   245777777777776 4


Q ss_pred             CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          161 IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       161 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      +|..   ..+|+.|++++|+++ .+|..++++++|+.|++++|++++..+.
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            5543   246778888888887 7888889999999999999999876543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=1.3e-13  Score=115.09  Aligned_cols=131  Identities=29%  Similarity=0.426  Sum_probs=104.1

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ...++.+|++.|+++ .+|..++.++ |+.|.+++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.+|+.+.
T Consensus       120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            456677788888877 6777666655 778888888887 77777777778888888888887 7788888888888888


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      +..|++. .+|+.+..+ .|..||++.|+++ .+|-.|.+|+.|++|-|.+|++...+
T Consensus       196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            8888887 677777743 5888999999988 88999999999999999999988643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=1e-11  Score=91.54  Aligned_cols=109  Identities=24%  Similarity=0.328  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccc-cCCCCC
Q 045729           94 GNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL-FNLSKL  171 (218)
Q Consensus        94 ~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L  171 (218)
                      .+...+++|++++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.+.+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            34456899999999998 454 354 5789999999999998 664 5788999999999999999 565555 368999


Q ss_pred             cEEecccCcccccCC--ccCCCCCCCCEEEccCCcCccc
Q 045729          172 EVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      +.|++++|++.. +.  ..+..+++|+.|++.+|+++..
T Consensus        91 ~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 QELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCcccch
Confidence            999999999973 32  3566889999999999998854

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=7.6e-11  Score=104.82  Aligned_cols=124  Identities=26%  Similarity=0.375  Sum_probs=103.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      .+.+.+++++++++ .+|..+.  ++++.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.  .+|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35788999999988 5776654  58999999999999 7887654  58999999999999 7887654  47999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      ++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++.++.
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCccc
Confidence            999998 7887764  58999999999998 6887664  5899999999999876543

>PLN03210 Resistant to P

Probab=99.23  E-value=7.7e-11  Score=110.23  Aligned_cols=35  Identities=17%  Similarity=-0.033  Sum_probs=21.6

Q ss_pred             CCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729          170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      +|+.|++++|...+.+|..++++++|+.|++++|.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence            45555555555444566666677777777777654

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=7e-13  Score=110.83  Aligned_cols=138  Identities=30%  Similarity=0.457  Sum_probs=116.5

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      .++.+.+..|.+. .+|..+.++..|+.++++.|+++ .+|..++.++ |+.|-+++|+++ .+|..++...+|..+|.+
T Consensus        99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence            3556677777776 78888889999999999999998 7888887776 888999999998 889888888889999999


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      .|.+. .+|..++.+.+|+.|++..|++. .+|++++.+ .|..||++.|++..++-.|.+|++|
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~L  236 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHL  236 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhh
Confidence            99988 78888899999999999999988 788888854 5788999999998877778888765

>PLN03210 Resistant to P

Probab=99.20  E-value=2e-10  Score=107.43  Aligned_cols=124  Identities=26%  Similarity=0.292  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729           75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  154 (218)
                      ++.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|++++++++.....+|. +..+++|++|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            444444444443 344433 3455555555555555 4454555555555555555433224443 44555555555555


Q ss_pred             CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729          155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      |.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            54333555555555555555555543333444433 3444444444444

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.20  E-value=1e-10  Score=103.87  Aligned_cols=127  Identities=24%  Similarity=0.280  Sum_probs=79.4

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      +++.|++++|+++ .+|..   .++|++|++++|+++ .+|..   .++|+.|++++|.++ .+|..   .++|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            4666666666666 34432   356677777777766 45532   345666677776666 45542   2456777778


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCcccccCCccC---C----------CC----CCCCEEEccCCcCcccCCCCCCCC
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI---G----------NF----SSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~----------~l----~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      +|+++ .+|..   .++|+.|++++|++++ +|...   .          .+    .+|++|++++|++++.++....++
T Consensus       291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~  365 (788)
T PRK15387        291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELY  365 (788)
T ss_pred             CCccc-ccccc---ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccc
Confidence            88777 55542   3678899999998874 44321   1          11    267888888888887665555554


Q ss_pred             C
Q 045729          217 L  217 (218)
Q Consensus       217 ~  217 (218)
                      .
T Consensus       366 ~  366 (788)
T PRK15387        366 K  366 (788)
T ss_pred             e
Confidence            4

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.18  E-value=5.1e-12  Score=102.27  Aligned_cols=134  Identities=28%  Similarity=0.339  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCC---CCEEEccCCcccc----cCCcccCCC-CCCcEEEccCcccccc----Cchh
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTF---LVSLDVAHNNFRG----HLPNELGQL-RRLRFIRFGFNKLSGS----IPTW  140 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~~  140 (218)
                      ++++.++++++.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            45666666666655333333333332   6666666665542    112223334 5556666666655521    2223


Q ss_pred             hcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729          141 IGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       141 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +..+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            34445555555555555421    122233344555555555554421    2223344455555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.15  E-value=2.7e-12  Score=103.15  Aligned_cols=148  Identities=22%  Similarity=0.252  Sum_probs=122.6

Q ss_pred             CCCCCCcc---ceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCC
Q 045729           56 ISYPICTW---IGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRL  123 (218)
Q Consensus        56 ~~~~~c~w---~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  123 (218)
                      +..+.|+-   .-|.|+.+         +...+.|+|..|+|+...+..|..+++|+.|++++|+|+..-|++|.+++++
T Consensus        38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l  117 (498)
T KOG4237|consen   38 PAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASL  117 (498)
T ss_pred             CCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhh
Confidence            33344554   44677532         4688999999999996666789999999999999999998888899999998


Q ss_pred             cEEEccC-ccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCc-cCCCCCCCCEEEc
Q 045729          124 RFIRFGF-NKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS-RIGNFSSPFILNL  200 (218)
Q Consensus       124 ~~L~l~~-n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L  200 (218)
                      ..|-+.+ |+|+ .+|. .|+.+.+++.|.+.-|++.-...+.+..++++..|.+.+|.+. .+++ .+..+.+++.+++
T Consensus       118 ~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  118 LSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             hHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhh
Confidence            7776655 9999 6665 7889999999999999988566778889999999999999998 6666 7889999999999


Q ss_pred             cCCcC
Q 045729          201 GYNNL  205 (218)
Q Consensus       201 ~~N~l  205 (218)
                      ..|++
T Consensus       196 A~np~  200 (498)
T KOG4237|consen  196 AQNPF  200 (498)
T ss_pred             hcCcc
Confidence            99874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.14  E-value=2.4e-12  Score=112.81  Aligned_cols=131  Identities=25%  Similarity=0.427  Sum_probs=110.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCC--------------------------CCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLG--------------------------NLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~--------------------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      .+.+++|++..|++. .+|+.+.                          .+..|+.|++.+|.++...-+.+.++++|+.
T Consensus       309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            467889999999876 3333211                          1345777888899998776667889999999


Q ss_pred             EEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729          126 IRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       126 L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      |++++|++. .+|. .+.++..|++|++++|+++ .+|..+.+++.|++|...+|.+. .+| .+..++.|+.+|++.|+
T Consensus       388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             eeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            999999998 7776 5678899999999999999 89999999999999999999998 788 88999999999999999


Q ss_pred             Ccc
Q 045729          205 LQG  207 (218)
Q Consensus       205 l~~  207 (218)
                      ++.
T Consensus       464 L~~  466 (1081)
T KOG0618|consen  464 LSE  466 (1081)
T ss_pred             hhh
Confidence            875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.10  E-value=1.8e-11  Score=99.02  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=16.9

Q ss_pred             CCCcEEecccCcccc----cCCccCCCCCCCCEEEccCCcCc
Q 045729          169 SKLEVFNAMYNVIDG----NIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       169 ~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +.|+.|++++|.++.    .+...+..+++|+++++++|.+.
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            345555555554431    12222333345555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=5.3e-11  Score=99.37  Aligned_cols=87  Identities=33%  Similarity=0.586  Sum_probs=50.3

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCC-CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..++.+++.+|.++ .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|...+..+.|+.++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            34666666666665 4555444453 6666666666665 55445556666666666666665 5555444555555555


Q ss_pred             ccCCcccCCCCc
Q 045729          152 LYNNSFTGPIPN  163 (218)
Q Consensus       152 l~~n~l~~~~p~  163 (218)
                      +++|.++ .+|.
T Consensus       193 ls~N~i~-~l~~  203 (394)
T COG4886         193 LSGNKIS-DLPP  203 (394)
T ss_pred             ccCCccc-cCch
Confidence            5555555 3443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=2e-10  Score=70.05  Aligned_cols=60  Identities=33%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729          146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       146 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      +|++|++++|+++...+..+.++++|++|++++|.++...|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555533333445555555555555555544444555666666666666543

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=2.4e-10  Score=95.49  Aligned_cols=132  Identities=33%  Similarity=0.494  Sum_probs=94.2

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      +++.+++++|.+. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|++. .+|........|+++.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            6777777777776 55556677778888888888777 66665556777777888888777 777765555667777777


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      +|.+. ..+..+.++..+..+.+.+|++. .++..++.++++++|++++|.++...+
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence            77544 45566677777777777777776 446667777778888888887776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=4.8e-11  Score=93.29  Aligned_cols=116  Identities=21%  Similarity=0.303  Sum_probs=93.6

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEe
Q 045729           96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN  175 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  175 (218)
                      -..|+++|+++|.++ .+..+..-.|.++.|++++|.+. .+.. +..+++|+.||+++|.++ .+..+-..+-+++.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            457899999999998 78888888899999999999998 5544 788999999999999988 5555555778899999


Q ss_pred             cccCcccccCCccCCCCCCCCEEEccCCcCccc--CCCCCCCCC
Q 045729          176 AMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL--LTIFGRLRL  217 (218)
Q Consensus       176 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~l~~  217 (218)
                      +++|.+. .+ ..++.+-+|..||+++|++...  +..+|+||.
T Consensus       359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             hhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence            9999886 33 3677788999999999998754  334666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=5.9e-10  Score=67.95  Aligned_cols=57  Identities=30%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           99 LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        99 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      |++|++++|+++..-+..|..+++|++|++++|.++...|..|..+++|+++++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444444222223334444444444444444222223344444444444443

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.81  E-value=4.5e-10  Score=90.59  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729           75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  154 (218)
                      -..++-++.+++ .+|..+.  +..+.+++..|+|+..-|..|+.+++|+.||++.|.|+..-|..|..+.++..|-+.+
T Consensus        48 g~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   48 GGIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             CceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            345677888877 6776654  5678999999999944445799999999999999999977888999999887776666


Q ss_pred             -CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          155 -NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       155 -n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                       |+|+..-...|.++.+++.|.+.-|++.....+.+..+++++.|.+-+|.+..+..
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence             89994334567899999999999999997777789999999999999998775443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.80  E-value=7.9e-09  Score=58.18  Aligned_cols=39  Identities=38%  Similarity=0.816  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHhccC-CCCccCCCCCCC--CCCCccceeeeC
Q 045729           30 TADQSALLAFKARVVD-YRSVLTNNWSIS--YPICTWIGISCG   69 (218)
Q Consensus        30 ~~~~~~l~~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~   69 (218)
                      ++|..||++||+++.+ +...+.+ |+..  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence            5799999999999984 5566777 9887  699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=1.3e-10  Score=100.04  Aligned_cols=127  Identities=28%  Similarity=0.356  Sum_probs=93.6

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchh-hcCCCCCCEEEc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKLQTLRL  152 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l  152 (218)
                      .+...+.++|.+. .+..++.-++.++.|++++|+++ .+. .+..+++|++||+++|.+. .+|.- ...+ .|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence            4566778888877 66777777888899999999887 333 5778888999999999888 67652 2233 3888899


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccC-CccCCCCCCCCEEEccCCcCcc
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI-PSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ++|.++ .+ ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|+|.||++.-
T Consensus       240 rnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            988887 33 34678888889999998876421 1234566788888888888753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.58  E-value=4.2e-09  Score=73.47  Aligned_cols=111  Identities=25%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCC-CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHL-GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      ..+++.+++++|.+. ..|+.| ..++.++.+++++|.+. .+|.++..++.|+.++++.|.+. ..|..+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            356667777777766 344433 34556777777777776 67777777777777777777776 666666666777777


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP  186 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  186 (218)
                      +..+|.+. .+|-.+..-...-..++.++.+.+.-+
T Consensus       129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            77766665 444443222222233444444444333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.6e-08  Score=82.60  Aligned_cols=111  Identities=22%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             CCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCC--ccccCCCCCc
Q 045729           96 LTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLFNLSKLE  172 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~  172 (218)
                      +++|+.|.++.|+++- .+-.....+|+|+.|++..|...+.-......+..|++||+++|++. ..+  .....++.|.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            4455555555555541 11122234556666666665311111112233456777777777765 333  3455677788


Q ss_pred             EEecccCccccc-CCcc-----CCCCCCCCEEEccCCcCcc
Q 045729          173 VFNAMYNVIDGN-IPSR-----IGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       173 ~L~L~~N~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~  207 (218)
                      .|+++.+.+... .|+.     ...+++|++|++..|++..
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            888888777632 2322     2456788888888888743

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=5.3e-08  Score=88.29  Aligned_cols=104  Identities=25%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             CCCEEEccCCc--ccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEE
Q 045729           98 FLVSLDVAHNN--FRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVF  174 (218)
Q Consensus        98 ~L~~L~l~~n~--l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  174 (218)
                      .|++|-+..|.  +. .++. .|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+.++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            56666666664  33 3333 2555666666666665544566666666666666666666666 666666666666666


Q ss_pred             ecccCcccccCCccCCCCCCCCEEEccCC
Q 045729          175 NAMYNVIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       175 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      ++..+.-...+|.....+.+|++|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            66666544344444455666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.56  E-value=1.4e-09  Score=75.79  Aligned_cols=130  Identities=22%  Similarity=0.320  Sum_probs=97.8

Q ss_pred             CcEEEEEcCCCCCcccCC---cCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCC
Q 045729           73 QRVTALNLSDIGLGGTIP---PHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ  148 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  148 (218)
                      ...-.++++.+.+- .++   ..+....+|+..++++|.+. .+|+.|. ..+.++.+++++|.++ .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34556777777654 233   33556678888999999998 7888776 4568999999999999 8999999999999


Q ss_pred             EEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          149 TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       149 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      .++++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+-.-...-..++..+++.+
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence            9999999999 77888888999999999999887 666553222222233345555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=8.2e-08  Score=87.09  Aligned_cols=128  Identities=23%  Similarity=0.322  Sum_probs=98.3

Q ss_pred             CCcEEEEEcCCCC--CcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCE
Q 045729           72 HQRVTALNLSDIG--LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  149 (218)
Q Consensus        72 ~~~l~~l~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  149 (218)
                      .+++++|-+..|.  +.......|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|.+++++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4578888888886  44223334778999999999998777799999999999999999999999 99999999999999


Q ss_pred             EEccCCcccCCCCccccCCCCCcEEecccCccc--ccCCccCCCCCCCCEEEc
Q 045729          150 LRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID--GNIPSRIGNFSSPFILNL  200 (218)
Q Consensus       150 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L  200 (218)
                      |++.++.....+|.....+.+|++|.+......  ...-..+.++.+|+.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999998766566676677999999998765422  112233344455554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=4.2e-08  Score=82.55  Aligned_cols=125  Identities=29%  Similarity=0.419  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729           75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  154 (218)
                      +..+++..|.+.. .-..+..+.+++.+++.+|.+. .+...+..+++|++|++++|+++ .+ ..+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cc-cchhhccchhhheecc
Confidence            3334444444432 2222445555555556555555 23322444555566666666555 22 2234445555555666


Q ss_pred             CcccCCCCccccCCCCCcEEecccCcccccCCcc-CCCCCCCCEEEccCCcCc
Q 045729          155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR-IGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~  206 (218)
                      |.++ .+ ..+..+..|+.+++++|.+. .+... ...+.+++.+++.+|.+.
T Consensus       150 N~i~-~~-~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  150 NLIS-DI-SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccch-hc-cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            5555 22 22333555555555555555 22221 244455555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.40  E-value=2.1e-07  Score=52.53  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=17.6

Q ss_pred             CCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 34444555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=5.7e-07  Score=50.70  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=13.7

Q ss_pred             CcEEEccCccccccCchhhcCCCCCCEEEccCCccc
Q 045729          123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT  158 (218)
Q Consensus       123 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  158 (218)
                      |++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 33333444444444444444433

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=1.6e-08  Score=87.49  Aligned_cols=104  Identities=25%  Similarity=0.335  Sum_probs=81.3

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729           98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM  177 (218)
Q Consensus        98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  177 (218)
                      .|.+.+.++|.+. .+..++.-++.++.|++++|+++ .. +.+..++.|++||+++|.+. .+|.--..-..|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4566677778877 66667777889999999999998 44 37888999999999999998 555422222349999999


Q ss_pred             cCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          178 YNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       178 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +|.++ ++ ..+.++++|+.||+++|-+.+
T Consensus       241 nN~l~-tL-~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  241 NNALT-TL-RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ccHHH-hh-hhHHhhhhhhccchhHhhhhc
Confidence            99987 33 367899999999999997765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.4e-07  Score=77.26  Aligned_cols=134  Identities=20%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             CCcEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc--hhhcCCCCCC
Q 045729           72 HQRVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ  148 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~  148 (218)
                      .++++.|.++.++++.. +...+..+++|+.|++..|...........-+..|+.||+++|.+. ..+  ...+.++.|.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            45677777777777622 3334556899999999999532233333445678999999999987 555  4567889999


Q ss_pred             EEEccCCcccCC-CCcc-----ccCCCCCcEEecccCcccccCC--ccCCCCCCCCEEEccCCcCcc
Q 045729          149 TLRLYNNSFTGP-IPNS-----LFNLSKLEVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       149 ~L~l~~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      .|+++.+.+... .|+.     ....++|++|++..|++. ..+  ..+..+++|+.|.+..|.++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            999999988732 2332     245789999999999986 333  234456777888877887653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.26  E-value=2.5e-07  Score=73.78  Aligned_cols=133  Identities=21%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             CcEEEEEcCCCCCcccCCc----CCCCCCCCCEEEccCCcccccC-------------CcccCCCCCCcEEEccCccccc
Q 045729           73 QRVTALNLSDIGLGGTIPP----HLGNLTFLVSLDVAHNNFRGHL-------------PNELGQLRRLRFIRFGFNKLSG  135 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~-------------p~~~~~l~~L~~L~l~~n~l~~  135 (218)
                      ++++.+|||+|.+...-++    -+.+...|+.|++.+|.+...-             ......-+.|+++...+|++. 
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-  170 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-
Confidence            5899999999987644333    2456788999999998886211             112344578999999999886 


Q ss_pred             cCc-----hhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccC
Q 045729          136 SIP-----TWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGY  202 (218)
Q Consensus       136 ~~p-----~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~  202 (218)
                      ..+     ..+...+.|+.+.+++|.+...    +...+..+++|++||+.+|-++..    +...++.+++|+.+++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            333     3456677888888888877511    223456788888888888877621    334556677788888877


Q ss_pred             CcCc
Q 045729          203 NNLQ  206 (218)
Q Consensus       203 N~l~  206 (218)
                      +.+.
T Consensus       251 cll~  254 (382)
T KOG1909|consen  251 CLLE  254 (382)
T ss_pred             cccc
Confidence            7654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=5.1e-07  Score=76.04  Aligned_cols=111  Identities=28%  Similarity=0.371  Sum_probs=89.9

Q ss_pred             CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729           94 GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV  173 (218)
Q Consensus        94 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  173 (218)
                      ..+..++.+.++.|.+. .+-..+..+++|..+++..|++. .+...+..+++|++|++++|.|+. + ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-c-cchhhccchhh
Confidence            35677788888889887 44445778899999999999998 555547789999999999999983 3 34567778999


Q ss_pred             EecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          174 FNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       174 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      |++++|.++ .+. .+..++.|+.+++++|.+....+
T Consensus       145 L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  145 LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             heeccCcch-hcc-CCccchhhhcccCCcchhhhhhh
Confidence            999999998 443 56668999999999999887655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=6.8e-06  Score=61.19  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCc--hhhcCCCCCCEE
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQTL  150 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L  150 (218)
                      ....+|+++|.+..  ...|..++.|.+|.+.+|.|+ .+.+.+. -+++|+.|.+.+|.+. .+.  ..+..+++|++|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            45667777777642  223566677777777777777 3333333 3566777777777765 322  134566777777


Q ss_pred             EccCCcccCCCC----ccccCCCCCcEEecccC
Q 045729          151 RLYNNSFTGPIP----NSLFNLSKLEVFNAMYN  179 (218)
Q Consensus       151 ~l~~n~l~~~~p----~~l~~l~~L~~L~L~~N  179 (218)
                      .+-+|.++. .+    --+..+++|+.||+..-
T Consensus       119 tll~Npv~~-k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhc-ccCceeEEEEecCcceEeehhhh
Confidence            777776652 21    12446677777776553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=1e-05  Score=60.24  Aligned_cols=103  Identities=25%  Similarity=0.302  Sum_probs=78.5

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc-CCCCCCEEEccCCcccCC-CCccccCCCCCcE
Q 045729           96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLRLYNNSFTGP-IPNSLFNLSKLEV  173 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~  173 (218)
                      ..+...+|+++|.+. .++ .|..++.|.+|.+++|+++ .+.+.+. .+++|..|.+.+|.+... .-..+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            346678999999987 443 4778999999999999999 5554444 457899999999988721 1233567899999


Q ss_pred             EecccCcccccCC----ccCCCCCCCCEEEccC
Q 045729          174 FNAMYNVIDGNIP----SRIGNFSSPFILNLGY  202 (218)
Q Consensus       174 L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~  202 (218)
                      |.+-+|.++ ..+    -.+..+++|+.||++.
T Consensus       118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            999999887 222    2457889999999765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=1.6e-06  Score=69.37  Aligned_cols=134  Identities=16%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CCcEEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cch
Q 045729           72 HQRVTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IPT  139 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~  139 (218)
                      .+.++++...+|++...    +...+...+.|+.+.+..|.+...    +-..+..+++|+.||+.+|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            57888888888887532    223355567889999988887621    223466789999999999988732    334


Q ss_pred             hhcCCCCCCEEEccCCcccCCCCc----ccc-CCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcC
Q 045729          140 WIGVLSKLQTLRLYNNSFTGPIPN----SLF-NLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       140 ~~~~l~~L~~L~l~~n~l~~~~p~----~l~-~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      .+..+++|+.+++++|.+...-..    .+. ..++|+++.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            566778899999999988633222    222 467899999999988621    223345678899999999988

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=7.1e-05  Score=62.22  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=56.7

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc-cccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..++.|+++++.++ .+| .+  -.+|++|+++++.--..+|..+  .++|++|++++| .+. .+|.      +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            44667777777665 444 12  1346777776533222455433  245666666666 343 4443      234444


Q ss_pred             ccCCccc--CCCCccccCC------------------CCCcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729          152 LYNNSFT--GPIPNSLFNL------------------SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       152 l~~n~l~--~~~p~~l~~l------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      +..+...  +.+|..+..+                  ++|++|++++|... .+|..+.  .+|+.|+++.|
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4433221  1233332211                  35667777766654 3343332  36666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=3.7e-06  Score=74.71  Aligned_cols=131  Identities=21%  Similarity=0.202  Sum_probs=89.2

Q ss_pred             CcEEEEEcCCCCCccc-CC-cCCCCCCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCE
Q 045729           73 QRVTALNLSDIGLGGT-IP-PHLGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT  149 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~-~~-~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  149 (218)
                      .++++||+++...-.. -| .--..+|.|+.|.+.+-.+.. .+-.-..++++|..||++++.++ .+ .+++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            5788888888653211 11 112357889999988876642 22233457889999999999988 44 77889999999


Q ss_pred             EEccCCcccC-CCCccccCCCCCcEEecccCcccccCC-------ccCCCCCCCCEEEccCCcCc
Q 045729          150 LRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIP-------SRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       150 L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-------~~~~~l~~L~~L~L~~N~l~  206 (218)
                      |.+.+=.+.. ..-..+.++++|++||+|..... ..+       +.-..+|+||.||.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9887766552 12235678999999999887654 222       11235789999999987654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.71  E-value=2.9e-05  Score=60.55  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=89.1

Q ss_pred             CcEEEEEcCCCCCcccCCcC----CCCCCCCCEEEccCCcccccCCccc-------------CCCCCCcEEEccCccccc
Q 045729           73 QRVTALNLSDIGLGGTIPPH----LGNLTFLVSLDVAHNNFRGHLPNEL-------------GQLRRLRFIRFGFNKLSG  135 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~n~l~~  135 (218)
                      ++++.+++|+|.+....|+.    +++-+.|++|.+++|.+...-...+             ..-|.|++....+|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            78888999999887665553    5667888899999888752111111             23477888888888887 


Q ss_pred             cCchh-----hcCCCCCCEEEccCCcccCCCCc--------cccCCCCCcEEecccCccccc----CCccCCCCCCCCEE
Q 045729          136 SIPTW-----IGVLSKLQTLRLYNNSFTGPIPN--------SLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFIL  198 (218)
Q Consensus       136 ~~p~~-----~~~l~~L~~L~l~~n~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L  198 (218)
                      ..|..     +..-..|+++.+.+|.|.   |.        .+..+.+|++||+..|-++-.    +...++.++.|+.|
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            44432     233357888888888776   43        234567899999999987621    23445667778888


Q ss_pred             EccCCcCc
Q 045729          199 NLGYNNLQ  206 (218)
Q Consensus       199 ~L~~N~l~  206 (218)
                      .+.+|-++
T Consensus       248 ~lnDClls  255 (388)
T COG5238         248 RLNDCLLS  255 (388)
T ss_pred             cccchhhc
Confidence            88877654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.60  E-value=2.9e-05  Score=59.90  Aligned_cols=83  Identities=19%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc--cccccCchhhcCCCCCCEEEccCCcccCCCCcc---ccCCCC
Q 045729           96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN--KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS---LFNLSK  170 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~  170 (218)
                      +..|+.+.+.+..++ .+ ..+..+++|+.|.++.|  ++.+.++-....+++|+++++++|++..  +.+   +..+.+
T Consensus        42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            334444444444443 11 12344555555666555  3333333333344556666666665541  222   233445


Q ss_pred             CcEEecccCccc
Q 045729          171 LEVFNAMYNVID  182 (218)
Q Consensus       171 L~~L~L~~N~l~  182 (218)
                      |..|++.+|..+
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            555566555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.0006  Score=56.85  Aligned_cols=101  Identities=20%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             CCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC-ccccccCchhhcCCCCCCEEEccCC-cccCCCCccccCCCC
Q 045729           93 LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNN-SFTGPIPNSLFNLSK  170 (218)
Q Consensus        93 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~  170 (218)
                      +..+.+++.|++++|.++ .+|. +  ..+|+.|.+++ +.++ .+|..+.  ++|++|++++| .+. .+|..      
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPES------  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccc------
Confidence            334578999999999888 6772 2  34699999987 4454 7776552  58999999998 554 56643      


Q ss_pred             CcEEecccCccc--ccCCccCCCC------------------CCCCEEEccCCcCcc
Q 045729          171 LEVFNAMYNVID--GNIPSRIGNF------------------SSPFILNLGYNNLQG  207 (218)
Q Consensus       171 L~~L~L~~N~l~--~~~p~~~~~l------------------~~L~~L~L~~N~l~~  207 (218)
                      |+.|++..+...  +.+|..+..+                  ++|++|++++|....
T Consensus       114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence            555556554421  2455444322                  378999999887554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=5e-06  Score=64.91  Aligned_cols=98  Identities=24%  Similarity=0.309  Sum_probs=58.3

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch--hhcCCCCCCEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQTL  150 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L  150 (218)
                      .+++.|+..++++...-  ....|+.|++|.|+-|.|+. +. .+..+++|+.|+|..|.|. .+.+  .+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            45556666666655321  13456777777777777762 22 2556777777777777776 4433  44567777777


Q ss_pred             EccCCcccCCCCcc-----ccCCCCCcEEe
Q 045729          151 RLYNNSFTGPIPNS-----LFNLSKLEVFN  175 (218)
Q Consensus       151 ~l~~n~l~~~~p~~-----l~~l~~L~~L~  175 (218)
                      ++..|...|.-+..     +..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777665544322     33456666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=0.00018  Score=55.61  Aligned_cols=91  Identities=21%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC--cccCCCCccccCCCCCcEEecccCcccccCCcc--
Q 045729          113 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN--SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR--  188 (218)
Q Consensus       113 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--  188 (218)
                      +......+..|+.+.+.+..++ .+ ..+..+++|+.|.++.|  ++.+.++.-...+++|+++++++|++.  ++..  
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence            3333344566777777776665 33 34667899999999999  666556555566799999999999987  2333  


Q ss_pred             -CCCCCCCCEEEccCCcCcc
Q 045729          189 -IGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       189 -~~~l~~L~~L~L~~N~l~~  207 (218)
                       +..+++|..|++.+|..+.
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence             4567788899998887654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=7.6e-05  Score=59.03  Aligned_cols=85  Identities=25%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccC-CCCccccCCCCCc
Q 045729           96 LTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLE  172 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~  172 (218)
                      .+.++.+++..|.++.  ++..-+.++|.|++|+++.|.+...+...-....+|+++-+.+..+.. .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4567777888887762  222334567778888888887763222111244567777777665542 2233345566666


Q ss_pred             EEecccCc
Q 045729          173 VFNAMYNV  180 (218)
Q Consensus       173 ~L~L~~N~  180 (218)
                      .+.++.|+
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            67666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.12  E-value=0.00038  Score=62.21  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CCcEEEEEcCCCCCcc-cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc--hhhcCCCCCC
Q 045729           72 HQRVTALNLSDIGLGG-TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ  148 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~  148 (218)
                      .|.+++|.+.+..+.. ....-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.++ ...  ..+..+++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence            5789999999987642 23334567899999999999998 34 56788999999988776665 222  3567899999


Q ss_pred             EEEccCCcccCCCC-------ccccCCCCCcEEecccCccccc
Q 045729          149 TLRLYNNSFTGPIP-------NSLFNLSKLEVFNAMYNVIDGN  184 (218)
Q Consensus       149 ~L~l~~n~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~  184 (218)
                      +||+|...... .+       +.-..+|+|+.||.|++.+...
T Consensus       224 vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  224 VLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            99999876552 22       1223589999999998877643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0006  Score=54.10  Aligned_cols=148  Identities=18%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CccceeeeC-CCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccc--c
Q 045729           61 CTWIGISCG-SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSG--S  136 (218)
Q Consensus        61 c~w~gv~c~-~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~--~  136 (218)
                      ..|..+.|. ...++++.|+++.|.+...+...-....+|++|.+.+..+.- .....+..+|.++.|.++.|.+..  .
T Consensus        84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~  163 (418)
T KOG2982|consen   84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL  163 (418)
T ss_pred             ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence            346666554 236888888888888774443322456778888877766641 223334566777777777773320  0


Q ss_pred             Cchhh---------------------------cCCCCCCEEEccCCcccCC-CCccccCCCCCcEEecccCccccc-CCc
Q 045729          137 IPTWI---------------------------GVLSKLQTLRLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGN-IPS  187 (218)
Q Consensus       137 ~p~~~---------------------------~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~p~  187 (218)
                      .....                           ...+++..+-+..|.+... .-.....++.+..|+|+.|++... --+
T Consensus       164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD  243 (418)
T KOG2982|consen  164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD  243 (418)
T ss_pred             ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence            00000                           0123444444444444311 112233456666778888877521 113


Q ss_pred             cCCCCCCCCEEEccCCcCccc
Q 045729          188 RIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       188 ~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      .+..++.|+.|.+.+|++...
T Consensus       244 ~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  244 ALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHcCCchhheeeccCCccccc
Confidence            567778888888888876643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.98  E-value=0.0042  Score=43.14  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      +++.+.+.. .+...-...|.+.++++.+++.++ +...-...|..+++++.+.+.. .+...-...|..+++++.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            455555543 333233334455555555555443 3312222344454555555543 2221112233445555555554


Q ss_pred             C
Q 045729          154 N  154 (218)
Q Consensus       154 ~  154 (218)
                      .
T Consensus        90 ~   90 (129)
T PF13306_consen   90 S   90 (129)
T ss_dssp             T
T ss_pred             c
Confidence            3

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=2.5e-05  Score=61.13  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCC--ccccCCCCCcE
Q 045729           96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLFNLSKLEV  173 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~  173 (218)
                      +.+.++|++-++.++ .+. ...+|+.|++|.|+-|+++ .+ ..+..|++|++|+|..|.|. .+.  ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            567788899898887 332 2357999999999999998 54 34788999999999999987 443  34678999999


Q ss_pred             EecccCcccccCCcc-----CCCCCCCCEEE
Q 045729          174 FNAMYNVIDGNIPSR-----IGNFSSPFILN  199 (218)
Q Consensus       174 L~L~~N~l~~~~p~~-----~~~l~~L~~L~  199 (218)
                      |.|..|.-.|.-+..     +.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999876655433     34566777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0052  Score=42.63  Aligned_cols=121  Identities=17%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729           91 PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK  170 (218)
Q Consensus        91 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  170 (218)
                      ..|.+..+|+.+.+.. .+...-...|..+++++.+.+..+ +...-...|..+++++.+.+.. .+...-...+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3567778999999875 566344556888889999999875 6523334677887899999976 343233445667899


Q ss_pred             CcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++.+++..+ +...-...+.+. +|+.+.+.. .+....+. |.+.++
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            999999776 442334466776 889888876 33333332 544433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=2.5e-05  Score=61.65  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             cEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEcc
Q 045729           74 RVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG  129 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  129 (218)
                      +++.+|+++..++.. +..-+.++.+|+.|.+.++++...+-..+.+=.+|+.++++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls  242 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS  242 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence            466666666555421 11122333444444444444443333333333334444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.64  E-value=0.0027  Score=49.92  Aligned_cols=132  Identities=20%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             CCCcEEEEEcCCCCCc---cc-------CCcCCCCCCCCCEEEccCCcccccCCcc----cCCCCCCcEEEccCcccccc
Q 045729           71 RHQRVTALNLSDIGLG---GT-------IPPHLGNLTFLVSLDVAHNNFRGHLPNE----LGQLRRLRFIRFGFNKLSGS  136 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~---~~-------~~~~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~  136 (218)
                      ...+++..+++.--..   ..       +.+.+.+++.|+..+++.|.+....|+.    +++-..|.+|.+++|.+. .
T Consensus        56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p  134 (388)
T COG5238          56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-P  134 (388)
T ss_pred             hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-c
Confidence            3567778877764321   11       2234677899999999999998666654    456788999999999875 2


Q ss_pred             Cch-h-------------hcCCCCCCEEEccCCcccCCCCcc-----ccCCCCCcEEecccCcccccCCc--------cC
Q 045729          137 IPT-W-------------IGVLSKLQTLRLYNNSFTGPIPNS-----LFNLSKLEVFNAMYNVIDGNIPS--------RI  189 (218)
Q Consensus       137 ~p~-~-------------~~~l~~L~~L~l~~n~l~~~~p~~-----l~~l~~L~~L~L~~N~l~~~~p~--------~~  189 (218)
                      +.. .             ...-|.|+++....|++. ..+..     +.....|+.+.+..|.+.   |.        .+
T Consensus       135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl  210 (388)
T COG5238         135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGL  210 (388)
T ss_pred             cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHH
Confidence            221 1             234578999999999886 33332     233468899999999875   43        23


Q ss_pred             CCCCCCCEEEccCCcCcc
Q 045729          190 GNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       190 ~~l~~L~~L~L~~N~l~~  207 (218)
                      ..+++|+.||+++|-++-
T Consensus       211 ~y~~~LevLDlqDNtft~  228 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             HHhCcceeeeccccchhh
Confidence            567899999999998763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.63  E-value=0.001  Score=31.33  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=9.4

Q ss_pred             CcEEecccCcccccCCccCC
Q 045729          171 LEVFNAMYNVIDGNIPSRIG  190 (218)
Q Consensus       171 L~~L~L~~N~l~~~~p~~~~  190 (218)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.00022  Score=56.45  Aligned_cols=127  Identities=17%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCC--cccCCCCCCcEEEccCccccccC-------------
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLP--NELGQLRRLRFIRFGFNKLSGSI-------------  137 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~-------------  137 (218)
                      +++.|.+.++++...+-..+.+-.+|+.++++.+. ++ +..  --+.+++.|..|+++++.+....             
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            45555566665555555555555566666665432 22 111  11334555555555555443211             


Q ss_pred             ----------------chhhcCCCCCCEEEccCCc-ccCCCCccccCCCCCcEEecccCcccccCCcc---CCCCCCCCE
Q 045729          138 ----------------PTWIGVLSKLQTLRLYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR---IGNFSSPFI  197 (218)
Q Consensus       138 ----------------p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~  197 (218)
                                      .--...+++|..||++.|. ++......+.+++.|++|.++.+..  .+|..   +...++|.+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence                            1112345677777776653 3322233455667777777776653  34432   355667777


Q ss_pred             EEccCC
Q 045729          198 LNLGYN  203 (218)
Q Consensus       198 L~L~~N  203 (218)
                      |+..+.
T Consensus       368 Ldv~g~  373 (419)
T KOG2120|consen  368 LDVFGC  373 (419)
T ss_pred             EEeccc
Confidence            776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0011  Score=31.18  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=9.8

Q ss_pred             CCEEEccCCcCcccCCCCCC
Q 045729          195 PFILNLGYNNLQGLLTIFGR  214 (218)
Q Consensus       195 L~~L~L~~N~l~~~~p~~~~  214 (218)
                      |++|++++|+++.+++.|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            45555555555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.88  E-value=0.00015  Score=55.51  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+..+...+.||++.|++- .....|+.++.+..++++.|++. .+|..++....+..+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455666677777777665 44445555666666677766666 66666666666666666666665 566666666666


Q ss_pred             cEEecccCccc
Q 045729          172 EVFNAMYNVID  182 (218)
Q Consensus       172 ~~L~L~~N~l~  182 (218)
                      +++++-+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            66666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.09  E-value=0.00028  Score=54.01  Aligned_cols=84  Identities=26%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..+++.||++.|++. .+...+..++.+..|+++.|++. ..|..+.....+..+++..|..+ ..|.+++..+++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            467889999998876 45556777788888999999987 78888888888888888888888 8898899999999999


Q ss_pred             ccCCccc
Q 045729          152 LYNNSFT  158 (218)
Q Consensus       152 l~~n~l~  158 (218)
                      .-+|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888766

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.05  E-value=0.016  Score=25.31  Aligned_cols=11  Identities=36%  Similarity=0.570  Sum_probs=3.2

Q ss_pred             CcEEEccCccc
Q 045729          123 LRFIRFGFNKL  133 (218)
Q Consensus       123 L~~L~l~~n~l  133 (218)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.10  E-value=0.1  Score=25.26  Aligned_cols=13  Identities=38%  Similarity=0.473  Sum_probs=5.7

Q ss_pred             CCcEEEccCcccc
Q 045729          122 RLRFIRFGFNKLS  134 (218)
Q Consensus       122 ~L~~L~l~~n~l~  134 (218)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.10  E-value=0.1  Score=25.26  Aligned_cols=13  Identities=38%  Similarity=0.473  Sum_probs=5.7

Q ss_pred             CCcEEEccCcccc
Q 045729          122 RLRFIRFGFNKLS  134 (218)
Q Consensus       122 ~L~~L~l~~n~l~  134 (218)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.60  E-value=0.1  Score=25.28  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=13.5

Q ss_pred             CCCCCEEEccCCcCcccCCC
Q 045729          192 FSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       192 l~~L~~L~L~~N~l~~~~p~  211 (218)
                      +++|++|+|++|++..+++.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777766554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.60  E-value=0.1  Score=25.28  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=13.5

Q ss_pred             CCCCCEEEccCCcCcccCCC
Q 045729          192 FSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       192 l~~L~~L~L~~N~l~~~~p~  211 (218)
                      +++|++|+|++|++..+++.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777766554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.46  E-value=0.11  Score=24.59  Aligned_cols=13  Identities=15%  Similarity=0.358  Sum_probs=4.7

Q ss_pred             CCcEEEccCcccc
Q 045729          122 RLRFIRFGFNKLS  134 (218)
Q Consensus       122 ~L~~L~l~~n~l~  134 (218)
                      +|++|++++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.97  E-value=0.51  Score=23.03  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=9.6

Q ss_pred             CCcEEEccCccccccCch
Q 045729          122 RLRFIRFGFNKLSGSIPT  139 (218)
Q Consensus       122 ~L~~L~l~~n~l~~~~p~  139 (218)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666665 5554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.71  E-value=0.78  Score=22.40  Aligned_cols=15  Identities=20%  Similarity=0.228  Sum_probs=10.2

Q ss_pred             CCCCEEEccCCcCcc
Q 045729          193 SSPFILNLGYNNLQG  207 (218)
Q Consensus       193 ~~L~~L~L~~N~l~~  207 (218)
                      .+|+.|++++|+++.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            467777777777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.12  E-value=0.31  Score=41.52  Aligned_cols=13  Identities=31%  Similarity=0.342  Sum_probs=6.4

Q ss_pred             CCCCCEEEccCCc
Q 045729          144 LSKLQTLRLYNNS  156 (218)
Q Consensus       144 l~~L~~L~l~~n~  156 (218)
                      +++|+.++++++.
T Consensus       242 ~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  242 CRKLKSLDLSGCG  254 (482)
T ss_pred             cCCcCccchhhhh
Confidence            3445555555444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.21  E-value=1.4  Score=21.73  Aligned_cols=14  Identities=36%  Similarity=0.268  Sum_probs=10.2

Q ss_pred             CCCCEEEccCCcCc
Q 045729          193 SSPFILNLGYNNLQ  206 (218)
Q Consensus       193 ~~L~~L~L~~N~l~  206 (218)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46778888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-13
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 34/180 (18%)
Query: 42  RVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVS 101
           + + Y S+  N ++   P   ++  +C      +T L+LS     G +PP  G+ + L S
Sbjct: 269 KSLQYLSLAENKFTGEIP--DFLSGAC----DTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 102 LDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK-------------- 146
           L ++ NNF G LP + L ++R L+ +   FN+ SG +P  +  LS               
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 147 -------------LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
                        LQ L L NN FTG IP +L N S+L   +  +N + G IPS +G+ S
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 34/180 (18%)
Query: 42  RVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVS 101
           + + Y S+  N ++   P   ++  +C      +T L+LS     G +PP  G+ + L S
Sbjct: 266 KSLQYLSLAENKFTGEIP--DFLSGAC----DTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 102 LDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK-------------- 146
           L ++ NNF G LP + L ++R L+ +   FN+ SG +P  +  LS               
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 147 -------------LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
                        LQ L L NN FTG IP +L N S+L   +  +N + G IPS +G+ S
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 32  DQSALLAFKARVVDYRSVLTNNWSISYPIC--TWIGISCGSRHQ--RVTALNLSDIGLG- 86
           D+ ALL  K  + +  ++  ++W  +   C  TW+G+ C +  Q  RV  L+LS + L  
Sbjct: 7   DKQALLQIKKDLGNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 87  --------------------------GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQL 120
                                     G IPP +  LT L  L + H N  G +P+ L Q+
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY-- 178
           + L  + F +N LSG++P  I  L  L  +    N  +G IP+S  + SKL  F +M   
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--FTSMTIS 182
Query: 179 -NVIDGNIPSRIGNFSSPFIXXXXXXXXXXXXTIFG 213
            N + G IP    N +  F+             +FG
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (372), Expect = 2e-43
 Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 32/218 (14%)

Query: 32  DQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQ--RVTALNLSDIGLGGT- 88
           D+ ALL  K  + +  ++ +   +      TW+G+ C +  Q  RV  L+LS + L    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 89  --------------------------IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRR 122
                                     IPP +  LT L  L + H N  G +P+ L Q++ 
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVF-NAMYNVI 181
           L  + F +N LSG++P  I  L  L  +    N  +G IP+S  + SKL        N +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 182 DGNIPSRIGNFSSPFILNLGYNNLQGLL-TIFGRLRLL 218
            G IP    N  +   ++L  N L+G    +FG  +  
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (293), Expect = 1e-31
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLV-SLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
             +      + G IP   G+ + L  S+ ++ N   G +P     L  L F+    N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
           G      G     Q + L  NS    +   +     L   +   N I G +P  +     
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 195 PFILNLGYNNLQG 207
              LN+ +NNL G
Sbjct: 270 LHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (266), Expect = 8e-28
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
            T++ +S   L G IPP   NL  L  +D++ N   G      G  +  + I    N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
             +   +G+   L  L L NN   G +P  L  L  L   N  +N + G IP   GN   
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 195 PFILNLGYNN 204
             +     N 
Sbjct: 293 FDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 3e-14
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             ++L+   L   +   +G    L  LD+ +N   G LP  L QL+ L  +   FN L G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 136 SIPTWIGVLSKLQTLRLYNNSFT--GPIPN 163
            IP   G L +       NN      P+P 
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (345), Expect = 3e-37
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 14/202 (6%)

Query: 20  SLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALN 79
           S   +   +L  +   L++FK  + D    L  +WS +   CT+ G++C  R  +VT+++
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPD--KNLLPDWSSNKNPCTFDGVTC--RDDKVTSID 56

Query: 80  LSDIGL---GGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           LS   L      +   L +LT L SL +++++  G +         L  +    N LSG 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 137 IPT--WIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI---G 190
           + T   +G  S L+ L + +N+   P   S    L+ LEV +   N I G          
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 191 NFSSPFILNLGYNNLQGLLTIF 212
                  L +  N + G + + 
Sbjct: 176 GCGELKHLAISGNKISGDVDVS 197

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (324), Expect = 2e-34
 Identities = 49/130 (37%), Positives = 67/130 (51%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L L + G  G IPP L N + LVSL ++ N   G +P+ LG L +LR ++   N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  +  +  L+TL L  N  TG IP+ L N + L   +   N + G IP  IG   +  I
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 198 LNLGYNNLQG 207
           L L  N+  G
Sbjct: 519 LKLSNNSFSG 528

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (318), Expect = 1e-33
 Identities = 46/132 (34%), Positives = 66/132 (50%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
            +L+LS   L GTIP  LG+L+ L  L +  N   G +P EL  ++ L  +   FN L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            IP+ +   + L  + L NN  TG IP  +  L  L +     N   GNIP+ +G+  S 
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 196 FILNLGYNNLQG 207
             L+L  N   G
Sbjct: 541 IWLDLNTNLFNG 552

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (306), Expect = 5e-32
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTF-LVSLDVAHNNFRGHLPNELGQ--LRRLRFIRFGFNK 132
             L+LS     G +P  L NL+  L++LD++ NNF G +   L Q     L+ +    N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
            +G IP  +   S+L +L L  N  +G IP+SL +LSKL       N+++G IP  +   
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 193 SSPFILNLGYNNLQGLL 209
            +   L L +N+L G +
Sbjct: 466 KTLETLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 1e-31
 Identities = 43/143 (30%), Positives = 62/143 (43%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L L    L G IP  L  +  L +L +  N+  G +P+ L     L +I    N+L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            IP WIG L  L  L+L NNSF+G IP  L +   L   +   N+ +G IP+ +   S  
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
              N         +   G  +  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (293), Expect = 2e-30
 Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 6/143 (4%)

Query: 66  ISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125
                    +  L +S   + G +   +     L  LDV+ NNF   +P  LG    L+ 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI 185
           +    NKLSG     I   ++L+ L + +N F GPIP     L  L+  +   N   G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285

Query: 186 PSRI-GNFSSPFILNLGYNNLQG 207
           P  + G   +   L+L  N+  G
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYG 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 4e-29
 Identities = 33/130 (25%), Positives = 55/130 (42%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
              + +   G     L  L+     ++    + GH          + F+   +N LSG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P  IG +  L  L L +N  +G IP+ + +L  L + +   N +DG IP  +   +    
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 198 LNLGYNNLQG 207
           ++L  NNL G
Sbjct: 709 IDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 4e-29
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 23/166 (13%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L L    L G IP  L N T L  + +++N   G +P  +G+L  L  ++   N  SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVI-------------- 181
           +IP  +G    L  L L  N F G IP ++F  S     N +                  
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 182 --------DGNIPSRIGNFSSPFILNLGYNNLQG-LLTIFGRLRLL 218
                    G    ++   S+    N+      G     F     +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 1e-28
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNEL-GQLRRLRFIRFGFNKLS 134
             LN+S     G IPP    L  L  L +A N F G +P+ L G    L  +    N   
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
           G++P + G  S L++L L +N+F+G +P ++L  +  L+V +  +N   G +P  + N S
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 194 SP-FILNLGYNNLQG 207
           +    L+L  NN  G
Sbjct: 368 ASLLTLDLSSNNFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 1e-24
 Identities = 35/113 (30%), Positives = 55/113 (48%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
               N++    GG   P   N   ++ LD+++N   G++P E+G +  L  +  G N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
           GSIP  +G L  L  L L +N   G IP ++  L+ L   +   N + G IP 
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 1e-22
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRL-------------- 123
           L LS+    G IP  LG+   L+ LD+  N F G +P  + +                  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578

Query: 124 --------RFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN 175
                           +  G     +  LS      + +  + G    +  N   +   +
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 176 AMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
             YN++ G IP  IG+    FILNLG+N++ G
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 2e-25
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 11/170 (6%)

Query: 48  SVLTNNWSISYPICTW---IGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDV 104
           +    NW+ +  +  W    G+S  S   RVT L+L   G  G +P  +G LT L  L +
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 105 AHNNFRG----HLPNELGQLRRLRFIRFGFNKLSGSIPTWIG--VLSKLQTLRLYNNSFT 158
             +  +       P  +         +        +   +      S L    + ++   
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 159 GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
             I  S     K      + N I   +   +   +      +G +     
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 9e-20
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 10/151 (6%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFR--------GHLPNELGQLRRLRFIR 127
           T + + +      +P  L  L  +  ++VA N                +     +++ I 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 128 FGFNKL-SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186
            G+N L +  + T +  + KL  L    N   G +P +  +  KL   N  YN I     
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370

Query: 187 SRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217
           +  G       L+  +N L+ +  IF    +
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 13/181 (7%)

Query: 50  LTNNWSISYPICTWIGISCGS--RHQRVTALNLSDIGL-GGTIPPHLGNLTFLVSLDVAH 106
           +  N  IS         +       +++  + +    L    +   L  +  L  L+  +
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 107 NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSL 165
           N   G      G   +L  +   +N+++     + G   +++ L   +N     P     
Sbjct: 340 NQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 166 FNLSKLEVFNAMYNVIDG-------NIPSRIGNFSSPFILNLGYNNLQGLL-TIFGRLRL 217
            ++S +   +  YN I          +        +   +NL  N +      +F     
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 218 L 218
           L
Sbjct: 459 L 459

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 16/158 (10%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG-------HLPNELGQLRRLRFIRF 128
           +++NLS+  +           + L S+++  N                      L  I  
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 129 GFNKLSGSIPTW-IGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM------YNVI 181
            FNKL+     +    L  L  + L  NSF+   P    N S L+ F          N  
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 182 DGNIPSRIGNFSSPFILNLGYNNLQGL-LTIFGRLRLL 218
               P  I    S   L +G N+++ +   I   + +L
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 29/169 (17%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH-------------------LPNELG 118
           +      +   +   +  LT L    + ++ F                         +  
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 119 QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT--------GPIPNSLFNLSK 170
            L+ L  +          +PT++  L ++Q + +  N                      K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 171 LEVFNAMYNVI-DGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
           +++    YN +    + + +       +L   YN L+G L  FG    L
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.5 bits (199), Expect = 8e-18
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 17/148 (11%)

Query: 88  TIPPHL--GNLTFLVSLDVAHNNFRG-------HLPNELGQLRRLRFIRFGFNKLSGSIP 138
            IP      +++ + ++D ++N            L     +   +  I    N++S    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 139 TWIGVLSKLQTLRLYNNSFTG-------PIPNSLFNLSKLEVFNAMYNVIDGNIPS-RIG 190
                 S L ++ L  N  T            +  N   L   +  +N +       R  
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 191 NFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                  ++L YN+     T       L
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 8/134 (5%)

Query: 78  LNLSDIGLGGTIPPHLGNLTF--LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
                +    T   +     F  L+   +  +  +  +        +   I    N ++ 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT- 196

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +   +  L+KL+   + N+ F        +     E     Y         +  N    
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDL 251

Query: 196 FILNLGYNNLQGLL 209
             + +        L
Sbjct: 252 TDVEVYNCPNLTKL 265

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 88  TIPPHL--GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG------FNKLSGSIPT 139
            +        L +LV +D+++N+F    P +      L+            N+     P 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 140 WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILN 199
            I +   L  L++ +N     +   +     + V +   N       S +  +    +  
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 200 LGYNNLQ 206
           L Y+  Q
Sbjct: 618 LFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 1/135 (0%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
              L+LS   L         +   L  LD++    +         L  L  +    N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFS 193
                    LS LQ L     +        + +L  L+  N  +N+I    +P    N +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 194 SPFILNLGYNNLQGL 208
           +   L+L  N +Q +
Sbjct: 150 NLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 2/135 (1%)

Query: 76  TALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
             L+     L          +L  L+ LD++H + R         L  L  ++   N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 135 GSI-PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
            +  P     L  L  L L         P +  +LS L+V N  +N             +
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 194 SPFILNLGYNNLQGL 208
           S  +L+   N++   
Sbjct: 519 SLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 20/113 (17%), Positives = 29/113 (25%), Gaps = 2/113 (1%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           L ++         P     L  L  LD++        P     L  L+ +    N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 137 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL-SKLEVFNAMYNVIDGNIPSR 188
                  L+ LQ L    N         L +  S L   N   N        +
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 6/138 (4%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL-SGS 136
           L L+   +          L+ L  L     N        +G L+ L+ +    N + S  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 137 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM----YNVIDGNIPSRIGNF 192
           +P +   L+ L+ L L +N         L  L ++ + N       N ++   P      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 193 SSPFILNLGYNNLQGLLT 210
                L L  N     + 
Sbjct: 201 RL-HKLTLRNNFDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 10/158 (6%)

Query: 65  GISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLR 124
            +   S +     L L +   G      L +L  L        + +G        L  L 
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLE 350

Query: 125 FIRFGFNKLS--GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID 182
           F+    N LS  G         + L+ L L  N     + ++   L +LE  +  ++ + 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 183 GNIPSRI-GNFSSPFILNLGYNNLQGLL-TIFGRLRLL 218
                 +  +  +   L++ + + +     IF  L  L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 3/124 (2%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
           + +T L+LS   L    P    +L+ L  L+++HNNF          L  L+ + +  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 133 LSGSIPTWIG-VLSKLQTLRLYNNSFTGPIPNSLF--NLSKLEVFNAMYNVIDGNIPSRI 189
           +  S    +    S L  L L  N F     +  F   +            ++   PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 190 GNFS 193
               
Sbjct: 590 QGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 78  LNLSDIGLGGTIPPHLGNLT----FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL 133
           L+LS   +       L  L       +SLD++ N      P    ++R L  +    N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212

Query: 134 SGSIP-TWIGVLSKLQTLRLYNNSFTG------PIPNSLFNLSKLEVFNAMYNVID---G 183
           S ++  T I  L+ L+  RL    F           ++L  L  L +       +D    
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 184 NIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217
           +I       ++    +L    ++ +         
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 26/165 (15%), Positives = 42/165 (25%), Gaps = 27/165 (16%)

Query: 71  RHQRVTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHL------PNELGQLRRL 123
           +  R+  L L +      +    +  L  L    +    FR          + L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 124 RFIRFGFNKLSGS---IPTWIGVLSKLQTLRLYNNSFTGPIPNS-LFNLSKLEVFNAMYN 179
               F    L      I      L+ + +  L + +       S  F    LE+ N  + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 180 VID----------------GNIPSRIGNFSSPFILNLGYNNLQGL 208
                              G       +  S   L+L  N L   
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            IP  +      + L L  N        S F+  +L+V +     I         + S  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 196 FILNLGYNNLQGL 208
             L L  N +Q L
Sbjct: 79  STLILTGNPIQSL 91

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 13/152 (8%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG-- 135
            N               NL  L  +++ +      LP+ L  L  L+ +    N+     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 136 -------SIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
                   +        K+Q   +  N+    P   SL  + KL + + ++N +      
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 188 RIGNFSSPFILNLGYNNLQGL-LTIFGRLRLL 218
             G       L L YN ++ +          +
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 1e-18
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG---------HLPNELGQLRRLRFI 126
           T + L +      +P  L +L  L SL++A N              L ++     +++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 127 RFGFNKLSG-SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI 185
             G+N L        +  + KL  L   +N        +     KL      YN I+  I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 186 PSRIGNFSSP-FILNLGYNNLQGLLTIFGRLRL 217
           P     F+     L   +N L+ +  IF    +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 3e-17
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 71  RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFR-------GHLPNELGQLRRL 123
           +    + + LS   +           + + ++ +++N                      L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 124 RFIRFGFNKLSGSIPTWIGV--LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN------ 175
             I   FNKL+ S+        L  L  + +  N F+   P    N S+L+ F       
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 176 AMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL-LTIFGRLRLL 218
           A  N I    P+ I    S   L +G N+++ +   +  +L +L
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 6e-16
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 36/176 (20%)

Query: 78  LNLSDIGLGG------TIPPHLGNLTFLVSLDVAHNNFRG-------------------H 112
           ++L D  +G        I   +  LT L  +  A++ F                     +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 113 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP---------IPN 163
                  L+ L  +          +P ++  L +LQ+L +  N              + +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 164 SLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                 K+++F   YN ++     + +       +L+  +N ++  L  FG    L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKL 597

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 18/159 (11%)

Query: 76  TALNLSDIGLGGTIPP--HLGNLTFLVSLDVAHNNFRGHLPN-----ELGQLRRLRFIRF 128
             L  S   L   IP   +  ++  + S+D ++N       N     +  +      +  
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFT-------GPIPNSLFNLSKLEVFNAMYNVI 181
            +N++           S + T+ L NN  T        P   +  N   L   +  +N +
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 182 DGNIPSRI--GNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
              +              +++ YN      T       L
Sbjct: 741 TS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 88  TIPPHL--GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR------FGFNKLSGSIPT 139
           ++        L +L ++DV++N F    P +     +L+            N++    PT
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 140 WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILN 199
            I     L  L++ +N     +   L    +L + +   N       + +  +    +  
Sbjct: 801 GITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 200 LGYNNLQ 206
           L Y+  Q
Sbjct: 858 LLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 21/186 (11%)

Query: 52  NNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG 111
           ++ ++S  +     ++     +R   + +    +       L     L      +   + 
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 112 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP----------- 160
              +    L+  +      N+++  I   I  L+KLQ +   N+ FT             
Sbjct: 417 IKKDSRISLKDTQIGNL-TNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 161 --------IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIF 212
                      S  NL  L             +P  + +      LN+  N       + 
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 213 GRLRLL 218
                L
Sbjct: 535 ADWTRL 540

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 28/177 (15%)

Query: 48  SVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN 107
           ++ + NW+ +  +  W                             L N   +  L +A  
Sbjct: 296 TIHSLNWNFNKELDMWGDQPGVD----------------------LDNNGRVTGLSLAGF 333

Query: 108 NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF- 166
             +G +P+ +GQL  L+ + FG +  + S   +              +            
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 167 ---NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLG--YNNLQGLLTIFGRLRLL 218
               L+  ++     N      P +  +  S     +G   N +  +     RL  L
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 4e-20
 Identities = 30/134 (22%), Positives = 45/134 (33%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
           +T LNL+   L      +    + L SLDV  N      P    +L  L+ +    N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
                     + L  L L +NS      N       L   +  +N +            +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 195 PFILNLGYNNLQGL 208
              L L  N +Q L
Sbjct: 147 LQELLLSNNKIQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 5e-19
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 2/141 (1%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
           +R+ ++T+L++    +    P     L  L  L++ HN               L  +   
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 130 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI 189
            N +             L TL L +N  +     +   L  L+      N I       +
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 190 GNFSSPF--ILNLGYNNLQGL 208
             F++     L L  N ++  
Sbjct: 166 DIFANSSLKKLELSSNQIKEF 186

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 3/143 (2%)

Query: 69  GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIR 127
              H  +  LNL+   +          L  L  LD+  N     L   E   L  +  I 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG--PIPNSLFNLSKLEVFNAMYNVIDGNI 185
             +NK          ++  LQ L L   +       P+    L  L + +   N I    
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 186 PSRIGNFSSPFILNLGYNNLQGL 208
              +       IL+L +NNL  L
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 7e-18
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
            + S + L   +P  L   T +  L++ HN  R        +  +L  +  GFN +S   
Sbjct: 9   ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
           P     L  L+ L L +N  +     +    + L   + M N I     +      +   
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 198 LNLGYNNLQGL-LTIFGRLRLL 218
           L+L +N L    L    +L  L
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 73  QRVTALNLSDIGLGGTIPPHLG--NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130
           + +  L LS+  +       L     + L  L+++ N  +   P     + RL  +    
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 131 NKLSGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLFNL--SKLEVFNAMYNVIDGNI 185
            +L  S+   + +    + ++ L L N+  +     +   L  + L + +  YN ++   
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 186 PSRIGNFSSPFILNLGYNNLQGL 208
                         L YNN+Q L
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 14/169 (8%)

Query: 50  LTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTF--LVSLDVAHN 107
           L N   +   +   + +   +    +  L+LS+  L  T       L +  L  LD+++N
Sbjct: 202 LNNV-QLGPSLTEKLCLELANTS--IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 108 NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN---------SFT 158
           N      +    L +L +    +N +       +  L  ++ L L  +         S  
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 159 GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
                S   L  LE  N   N I G   +      +   L+L  +    
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 5/137 (3%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG---QLRRLRFIRFGFNKLS 134
           L LS   +    P     +  L  L + +      L  +L        +R +    ++LS
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 135 GSIPTWIGVL--SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
            +  T    L  + L  L L  N+      +S   L +LE F   YN I       +   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 193 SSPFILNLGYNNLQGLL 209
            +   LNL  +  +  +
Sbjct: 296 FNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFR-GHLPNELGQ---LRRLRFIRFGFNKL 133
           LN+ D  + G        L  L  L ++++      L NE         L  +    NK+
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNF 192
           S         L  L+ L L  N     +    +  L  +      YN       +     
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 193 SSPFILNLGYNNLQGLLTIFG 213
            S   L L    L+ + +   
Sbjct: 454 PSLQRLMLRRVALKNVDSSPS 474

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 79  NLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP 138
            L      G     L  L+ L  L++  N F          L  L+ I  G N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 139 TWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPS 187
           +       L++L L  N  T             L   +  +N  D    S
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 15/156 (9%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL---------PNELGQLRRLRFIRF 128
             L    +       L  L  +  L++  +  +  +               L+ L  +  
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNN--SFTGPIPNSLFNL--SKLEVFNAMYNVIDGN 184
             N + G        L  L+ L L N+  S       +  +L  S L + N   N I   
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 185 IPSRIGNFSSPFILNLGYNNLQGLLT--IFGRLRLL 218
                       +L+LG N +   LT   +  L  +
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 1/114 (0%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
             +  LNL   G          +L  L  +D+  NN      +       L+ +    N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 133 LSGSIPTWIG-VLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI 185
           ++       G     L  L +  N F     +  + ++ +   +     +  + 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 1/135 (0%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
              ++LS   L         N + L  LD++              L  L  +    N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFS 193
              P     L+ L+ L              +  L  L+  N  +N I    +P+   N +
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 194 SPFILNLGYNNLQGL 208
           +   ++L YN +Q +
Sbjct: 154 NLVHVDLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 1/129 (0%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGS 136
           L++S              LT L +L +A N+F+ +   N       L F+     +L   
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 137 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPF 196
                  L +LQ L + +N+      +    L  L   +  +N I+ +         S  
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 197 ILNLGYNNL 205
             NL  N++
Sbjct: 549 FFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 3/131 (2%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
               D  L   +P  +   +   ++D++ N  +            L+++     ++    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
                 L  L  L L  N      P S   L+ LE   A+   +       IG   +   
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 198 LNLGYNNLQGL 208
           LN+ +N +   
Sbjct: 133 LNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 76  TALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
             L+     L          +L  L+ LD+++ N +         L  L  ++   N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 135 GSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
            +  +      + L  L L               L +L++ N  +N +     S      
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 194 SPFILNLGYNNLQGL 208
           S   L+  +N ++  
Sbjct: 522 SLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 6/135 (4%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFR--GHLPNELGQLRRLRFIRFGFNKLSG 135
           L L+      +I      L  L  LD++ N     G           LR +   FN    
Sbjct: 333 LTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
            +      L +LQ L   +++       S F +L KL   +  Y     +        +S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 195 PFILNLGYNNLQGLL 209
              L +  N+ +   
Sbjct: 450 LNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 31/86 (36%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
             +T L+LS   L          L  L  L+++HNN      +   QL  L  +   FN+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFT 158
           +  S          L    L NNS  
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 78  LNLSDIGLGG-TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF----IRFGFNK 132
           LN++   +    +P +  NLT LV +D+++N  +    N+L  LR        +    N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGN 191
           +   I        KL  L L  N  +  I  +   NL+ L V   +           I  
Sbjct: 193 ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 192 FSSPFIL-NLGYNNL 205
            S    L ++  +  
Sbjct: 252 PSIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 9/147 (6%)

Query: 74  RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL 133
            +    L+              L  + ++ +A  + +     ++ +  + + +     +L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
                     L  L++L L  N  +  I      L  L   +   N +  +      +  
Sbjct: 320 KQFPTLD---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 194 SPFI--LNLGYNNLQGLLTIFGRLRLL 218
           +  +  L+L +N    +   F  L  L
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEEL 401

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/145 (12%), Positives = 33/145 (22%), Gaps = 14/145 (9%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHL------PNELGQLRRLRF--IRF 128
           L L        I    L NL  L    +    F+         P+ +  L  +     R 
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
            +             L+ +  + L   S        +    K +  + +   +       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL- 325

Query: 189 IGNFSSPFILNLGYNNLQGLLTIFG 213
             +      L L  N          
Sbjct: 326 --DLPFLKSLTLTMNKGSISFKKVA 348

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 23/134 (17%), Positives = 33/134 (24%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
              L  S   L          L  L  LD+          +      RL  +    N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
               T +     L+ L       +      L N   LE      N I      +      
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 195 PFILNLGYNNLQGL 208
             +L+   N +  L
Sbjct: 155 LKVLDFQNNAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 4/142 (2%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
            N  ++GL   IP  L        L+ + N           +L  L F+     ++    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFI 197
                   +L TL L  N        +L     L+    +   I       + N  +   
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 198 LNLGYNNLQGL-LTIFGRLRLL 218
           L LG N++  + L        L
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKL 155

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 74  RVTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFR--GHLPNELGQLRRLRFIRFGF 130
            +T L++        +    L NL  L  LD++H++         +L  L  L+ +   +
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI 189
           N+             +L+ L L           S F NL  L+V N  ++++D +     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 190 GNFSSPFILNLGYNNLQGL 208
               +   LNL  N+    
Sbjct: 446 DGLPALQHLNLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 4/174 (2%)

Query: 48  SVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTF--LVSLDVA 105
              + N+  +  +         S  Q +      D+      P     L    + S+++ 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 106 HNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 165
            + F     N       L+ +      LS  +P+ +  LS L+ L L  N F      S 
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 166 FNLSKLEVFNAMYNVIDGNIPSR-IGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
            N   L   +   N     + +  + N  +   L+L +++++       +LR L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 4/135 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG---HLPNELGQLRRLRFIRFGFNK 132
             LNLS   L  +       L  L  L++  N+F        N L  L RL  +   F  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           LS         L  +  + L +N  T     +L +L  +   N   N I   +PS +   
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 193 SSPFILNLGYNNLQG 207
           S    +NL  N L  
Sbjct: 547 SQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
           SR   +T L+L+   +         +   L +L +  N         L   + L+ + F 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 130 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI 189
              +S      +     L++L L +N  +       F   KL+V +   N I       +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 190 GNFSS--PFILNLGYNNLQGL-LTIFGRLRLL 218
            +        LNL  N++ G+    F      
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           L+L+   L          NL  L  L+++H+            L  L+ +    N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 137 IPTWIGV---LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFS 193
                     L +L+ L L     +    ++  +L  +   +  +N +  +    + +  
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 194 SPFILNLGYNNLQGL 208
               LNL  N++  +
Sbjct: 525 G-IYLNLASNHISII 538

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 5e-15
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 13/151 (8%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQ---------LRRLRFIRF 128
           L L+   L   +P  + +L  L  L +        LP  L           L  L+ +R 
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
            +  +  S+P  I  L  L++L++ N+  +  +  ++ +L KLE  +        N P  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 189 IGNFSSPFILNL-GYNNLQGLLTIFGRLRLL 218
            G  +    L L   +NL  L     RL  L
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
            +L L   G+  ++P  + NL  L SL + ++     L   +  L +L  +         
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           + P   G  + L+ L L + S    +P  +  L++LE  +    V    +PS I    + 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 196 FILNLGYNNLQGLL 209
            I+ +  +    L 
Sbjct: 304 CIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 9e-15
 Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 17/180 (9%)

Query: 50  LTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTF--LVSLDVAHN 107
              +++              S + ++       +         L + T    V+L++   
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK---ATADLLEDATQPGRVALELRSV 91

Query: 108 NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFN 167
                 P++  +L  L+ +      L   +P  +   + L+TL L  N     +P S+ +
Sbjct: 92  PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIAS 148

Query: 168 LSKLEVFNAMYNVIDGNIPSRIGNFSSPF---------ILNLGYNNLQGLLTIFGRLRLL 218
           L++L   +         +P  + +  +            L L +  ++ L      L+ L
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR-FGFNKLSGSIPTWIGVLSK 146
            + P + +L  L  LD+       + P   G    L+ +     + L  ++P  I  L++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 147 LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
           L+ L L        +P+ +  L    +     ++       R
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 14/91 (15%), Positives = 28/91 (30%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L+L         PP  G    L  L +   +    LP ++ +L +L  +          +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL 168
           P+ I  L     + +  +       +     
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 23/153 (15%)

Query: 87  GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG----------- 135
           G+   H  + +   +L    +       + L Q +R           +            
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 136 --------SIPTWIGVLS--KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI 185
                   +    +   +      L L +       P+  F LS L+        +   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 186 PSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
           P  +  F+    L L  N L+ L      L  L
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIASLNRL 152

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
             +T L + D  L  ++P     L    +L+V+ N     LP     L  L         
Sbjct: 61  AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L         + S L  L ++ N  T  +P     L +L V +   N +  ++P+     
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSD---NQLA-SLPALPSEL 163

Query: 193 SSPFILNLGYNNLQGLLTIFGRLRLL 218
                L    N L  L  +   L+ L
Sbjct: 164 CK---LWAYNNQLTSLPMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 20/143 (13%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L +    L  ++P     L     L V+ N     LP    +L +L       N+L+ 
Sbjct: 124 CKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLA-SLPALPSELCKLWA---YNNQLT- 174

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           S+P        LQ L + +N     +P     L KL  +N        ++P+        
Sbjct: 175 SLPMLPS---GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT----SLPALPSGLKE- 225

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
             L +  N L  L  +   L+ L
Sbjct: 226 --LIVSGNRLTSLPVLPSELKEL 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 20/143 (13%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L +S   L  ++P     L  L            HLP     L +L       N+L+ 
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKL---WIFGNQLT- 134

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           S+P        LQ L + +N     +P     L KL  +N   N +  ++P         
Sbjct: 135 SLPVLPP---GLQELSVSDNQLAS-LPALPSELCKLWAYN---NQLT-SLPMLPSGLQE- 185

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
             L++  N L  L T+   L  L
Sbjct: 186 --LSVSDNQLASLPTLPSELYKL 206

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L +S   L  ++P     L     L V+ N     LP     L  L       N+L+ 
Sbjct: 224 KELIVSGNRLT-SLPVLPSELK---ELMVSGNRLT-SLPMLPSGLLSLSV---YRNQLT- 274

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +P  +  LS   T+ L  N  +     +L  ++    ++      D    S      + 
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 196 FILNLGY--NNLQGLLTIFGRLRLL 218
            +    +     +G      R  + 
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 99  LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 158
              L+V  +     LP+ L     +  +    N L+ S+P       +L+TL +  N  T
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94

Query: 159 GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
             +P     L +L +F+        ++P+          L +  N L  L  +   L+ L
Sbjct: 95  S-LPVLPPGLLELSIFSNPLT----HLPALPSGLCK---LWIFGNQLTSLPVLPPGLQEL 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 19/146 (13%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
            + + L L+ + L  ++P +L     +  L++  N     LP     L  L       N+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYL---DACDNR 111

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           LS ++P        L+ L + NN  T  +P     L  +   N   N +   +P    + 
Sbjct: 112 LS-TLPELPA---SLKHLDVDNNQLTM-LPELPALLEYINADN---NQL-TMLPELPTSL 162

Query: 193 SSPFILNLGYNNLQGLLTIFGRLRLL 218
                L++  N L  L  +   L  L
Sbjct: 163 EV---LSVRNNQLTFLPELPESLEAL 185

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLR----FIRF 128
             +  L++ +  L   +P    +L  L        N    LP    +         F R 
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPESLEALD----VSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN 175
             N+++  IP  I  L    T+ L +N  +  I  SL   +    ++
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 88  TIPPHLGNLTFLVSLDVAHN---NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 144
           +I   + N   L S +  +N          +   +  +        N+    +     ++
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLI 58

Query: 145 SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204
           ++   L+L   + +  +P++L    ++ V     N +  ++P    +      L+   N 
Sbjct: 59  NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPASLEY---LDACDNR 111

Query: 205 LQGLLTIFGRLRLL 218
           L  L  +   L+ L
Sbjct: 112 LSTLPELPASLKHL 125

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFL----VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN 131
            AL++S   L  ++P             +      N    H+P  +  L     I    N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 132 KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS 164
            LS  I   +   +           F+      
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
             +T L L    L  T    L N   LV +D+++N     + +   +++RL  +    N+
Sbjct: 232 VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L  ++  +   +  L+ L L +N     +  +     +LE     +N I   +   +   
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI-VTLK--LSTH 344

Query: 193 SSPFILNLGYNNLQ 206
            +   L L +N+  
Sbjct: 345 HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           +++               L     +   ++  R      L   R++  +     ++   I
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 90

Query: 138 PTWI-GVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI-GNFSS 194
            T+       +Q L +  N+    +P  +F N+  L V     N +  ++P  I  N   
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 195 PFILNLGYNNLQGL-LTIFGRLRLL 218
              L++  NNL+ +    F     L
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSL 173

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 79  NLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP 138
           +L    +   +   L     +  LD +HN+    +   +     L  ++   N L+    
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA 248

Query: 139 TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFIL 198
             +     L  + L  N     + +    + +LE      N +   +        +  +L
Sbjct: 249 WLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVL 306

Query: 199 NLGYNNLQGLLTIFGRLRLL 218
           +L +N+L  +     +   L
Sbjct: 307 DLSHNHLLHVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 88  TIPPHL-GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK 146
            +PPH+  N+  L  L +  N+             +L  +    N L           + 
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 147 LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206
           LQ L+L +N  T  +  SL     L   N  YN++     S +    +   L+  +N++ 
Sbjct: 173 LQNLQLSSNRLTH-VDLSLI--PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 224

Query: 207 GL-LTIFGRLRLL 218
            +   +   L +L
Sbjct: 225 VVRGPVNVELTIL 237

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             +   +  L     P L NL FL ++   +N+ +  LP+    L  +     G N L  
Sbjct: 176 EFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE- 228

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +P  +  L  L T+   NN     +P+   +L  L V +        ++P    + +  
Sbjct: 229 ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT----DLPELPQSLTF- 281

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
             L++  N   GL  +   L  L
Sbjct: 282 --LDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 71  RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130
             ++   L L+++GL  ++P    +L    SL  + N+    LP     L+ L       
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
             LS   P        L+ L + NN     +P  L N S L++ +   N +   +P    
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPP 173

Query: 191 NFSSPFILNLGYNNLQGL 208
           +      +  G N L+ L
Sbjct: 174 SLEF---IAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L +S+  L     P L N +FL  +DV +N+ +  LP+    L  +     G N+L  
Sbjct: 134 EYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE- 186

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +P  +  L  L  +   NNS    +P+   +L  +   N   N+++  +P  + N    
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGN---NILE-ELPE-LQNLPFL 239

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
             +    N L+ L  +   L  L
Sbjct: 240 TTIYADNNLLKTLPDLPPSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 31/158 (19%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG------------ 135
            +P    N+        A + +  + P   G+ R +   R                    
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS-------- 187
           S+P        L++L    NS T  +P    +L  L V N     +    P         
Sbjct: 85  SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140

Query: 188 -------RIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                   + N S   I+++  N+L+ L  +   L  +
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             LN S   +  ++     +L     L+V++N     LP    +L RL      FN L+ 
Sbjct: 300 YYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPPRLERLIA---SFNHLA- 350

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +P        L+ L +  N      P+   ++  L + + +       +P    N    
Sbjct: 351 EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRMNSHL-----AEVPELPQNLKQ- 400

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
             L++  N L+    I   +  L
Sbjct: 401 --LHVETNPLREFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 21/146 (14%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
           Q +T L++S+      +     NL     L+ + N  R  L +    L  L       NK
Sbjct: 277 QSLTFLDVSENIFS-GLSELPPNLY---YLNASSNEIR-SLCDLPPSLEELNV---SNNK 328

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L   +P       +L+ L    N     +P    NL +L V     N +    P    + 
Sbjct: 329 LI-ELPALPP---RLERLIASFNHLAE-VPELPQNLKQLHVEY---NPLR-EFPDIPESV 379

Query: 193 SSPFILNLGYNNLQGLLTIFGRLRLL 218
                L +  ++L  +  +   L+ L
Sbjct: 380 ED---LRMN-SHLAEVPELPQNLKQL 401

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
                +  L+LS   +         +L+ L +L +  N  +         L  L+ +   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 130 FNKLSGSIPTWIGVLSKLQTLRLYNNSFT-GPIPNSLFNLSKLEVFNAMYNVIDGNIPSR 188
              L+      IG L  L+ L + +N      +P    NL+ LE  +   N I     + 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 189 IGNFSS----PFILNLGYNNLQGL-LTIFGRLRL 217
           +            L+L  N +  +    F  +RL
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE--LGQLRRLRFIRFGFNKL 133
             L+LS  G+  T+  +   L  L  LD  H+N +  +        LR L ++       
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNF 192
             +       LS L+ L++  NSF       +F  L  L   +     ++   P+   + 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 193 SSPFILNLGYNNLQGL-LTIFGRLRLL 218
           SS  +LN+  N L+ +   IF RL  L
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 89  IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 148
           IP +L       +LD++ N  R            L+ +     ++          LS L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 149 TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ-- 206
           TL L  N        +   LS L+   A+   +       IG+  +   LN+ +N +Q  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 207 GLLTIFGRLRLL 218
            L   F  L  L
Sbjct: 140 KLPEYFSNLTNL 151

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 88  TIPPH-LGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLS 145
                    L+ L  L +A N+F+ +   +   +LR L F+     +L    PT    LS
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
            LQ L + +N            L+ L+      N  D + P 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 29/165 (17%), Positives = 43/165 (26%), Gaps = 32/165 (19%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFR-GHLPNELGQLRRLRFIRFGFNKLS 134
             L   +  L       +G+L  L  L+VAHN  +   LP     L  L  +    NK+ 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 135 G---------------------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF- 166
                                        I        +L  L L NN  +  +  +   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 167 NLSKLEVFNAMYNVIDGN---IPSRIGNFSSPFILNLGYNNLQGL 208
            L+ LEV   +                       L +    L  L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           L ++         P     L  L  LD++        P     L  L+ +    N+L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 137 IPTWIGVLSKLQTLRLYNNSF 157
                  L+ LQ + L+ N +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 66  ISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125
           +   S +     L L +   G      L +L     L    N   G+  +E+  L  L F
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKG-GNAFSEVD-LPSLEF 351

Query: 126 IRFGFNKLS--GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG 183
           +    N LS  G         + L+ L L  N     + ++   L +LE  +  ++ +  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 184 NIPSRI-GNFSSPFILNLGYNNLQGLLT-IFGRLRLL 218
                +  +  +   L++ + + +     IF  L  L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 11/147 (7%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
            R     ++D  L   +     +   +  LD++ N        +L    +L  +    N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L  ++   +  LS L+TL L NN         L     +E  +A  N I   +       
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC--SRG 119

Query: 193 SSPFILNLGYNNLQGLL-TIFGRLRLL 218
                + L  N +  L     G    +
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRV 146

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 17/144 (11%), Positives = 43/144 (29%), Gaps = 5/144 (3%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLS 134
             + L++  +        G  + +  LD+  N     +          L  +   +N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
             +   +   +KL+TL L +N     +     + + +   +   N +   I   +    +
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 195 PFILNLGYNNLQGLLTIFGRLRLL 218
               +L  N            +  
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQ 262

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 94  GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153
            N        V  ++ +  L +       ++ +    N LS      +   +KL+ L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL-LTIF 212
           +N     +   L +LS L   +     ++ N    +    S   L+   NN+  +  +  
Sbjct: 67  SNVLYETLD--LESLSTLRTLD-----LNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 213 GRLRLL 218
              + +
Sbjct: 120 QGKKNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150
                   L +LD++ N     +  E      + +I    NKL   I   +     L+  
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 151 RLYNNSF-TGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL- 208
            L  N F  G + +      +++        +           + P + + G    + L 
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 209 LTIFGRLRLL 218
                RL  L
Sbjct: 301 APFADRLIAL 310

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 92  HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151
            L     + +L  A+NN    +     + +  + I    NK++       G  S++Q L 
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 152 LYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210
           L  N            +   LE  N  YN I  ++  ++  F+    L+L  N L  +  
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGP 208

Query: 211 IFGRLRLL 218
            F     +
Sbjct: 209 EFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 113 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE 172
           +        R +  +   + L  ++ +       ++ L L  N  +      L   +KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 173 VFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
           + N   NV+       + + S+   L+L  N +Q L
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 10/78 (12%), Positives = 30/78 (38%)

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           +I       ++ +  ++ ++S    + +   +   ++  +   N +     + +  F+  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 196 FILNLGYNNLQGLLTIFG 213
            +LNL  N L   L +  
Sbjct: 61  ELLNLSSNVLYETLDLES 78

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
            R     ++D  L   +     +   +  LD++ N        +L    +L  +    N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L       +  LS L+TL L NN         L     +E  +A  N I   +       
Sbjct: 70  LY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--G 119

Query: 193 SSPFILNLGYNNLQGL 208
                + L  N +  L
Sbjct: 120 QGKKNIYLANNKITML 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 95  NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154
           N        V  ++ +  L +       ++ +    N LS      +   +KL+ L L +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL-LTIFG 213
           N     +   L +LS L   +     ++ N    +    S   L+   NN+  +  +   
Sbjct: 68  NVLYETLD--LESLSTLRTLD-----LNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 214 RLRLL 218
             + +
Sbjct: 121 GKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 93  LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152
           L     + +L  A+NN    +    GQ    + I    NK++       G  S++Q L L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 153 YNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211
             N            +   LE  N  YN I  ++  ++  F+    L+L  N L  +   
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209

Query: 212 FGRLRLL 218
           F     +
Sbjct: 210 FQSAAGV 216

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150
                   L +LD++ N     +  E      + +I    NKL   I   +     L+  
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 151 RLYNNSFT-GPIPNSLFNLSKLE 172
            L  N F  G + +      +++
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQ 265

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 113 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE 172
           +        R +  +   + L  ++ +       ++ L L  N  +      L   +KLE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 173 VFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
           + N   NV+       + + S+   L+L  N +Q L
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/78 (12%), Positives = 30/78 (38%)

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           +I       ++ +  ++ ++S    + +   +   ++  +   N +     + +  F+  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 196 FILNLGYNNLQGLLTIFG 213
            +LNL  N L   L +  
Sbjct: 61  ELLNLSSNVLYETLDLES 78

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 73  QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
             +T L L    L  T    L N   LV +D+++N     + +   +++RL  +    N+
Sbjct: 226 VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           L  ++  +   +  L+ L L +N     +  +     +LE     +N I   +   +   
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI-VTLK--LSTH 338

Query: 193 SSPFILNLGYNNLQ 206
            +   L L +N+  
Sbjct: 339 HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 79  NLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP 138
           +L    +   +   L     +  LD +HN+    +         L  ++   N L+    
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA 242

Query: 139 TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFIL 198
             +     L  + L  N     + +    + +LE      N +   +        +  +L
Sbjct: 243 WLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 199 NLGYNNLQGLLTIFGRLRLL 218
           +L +N+L  +     +   L
Sbjct: 301 DLSHNHLLHVERNQPQFDRL 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 4/133 (3%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           +++               L     +   ++  R      L   R++  +     ++    
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI-GNFSSP 195
                    +Q L +  N+    +P  +F N+  L V     N +  ++P  I  N    
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143

Query: 196 FILNLGYNNLQGL 208
             L++  NNL+ +
Sbjct: 144 TTLSMSNNNLERI 156

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 88  TIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK 146
            I        T L +L ++ N    H+   L  +  L      +N L     + + +   
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 147 LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206
           ++ L   +NS           L+ L++ +   N +  +    + N+     ++L YN L+
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQH---NNLT-DTAW-LLNYPGLVEVDLSYNELE 261

Query: 207 GL-LTIFGRLRLL 218
            +    F +++ L
Sbjct: 262 KIMYHPFVKMQRL 274

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 79  NLSDIGLGG---TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           +L          T    + N+T L SL + +N       + L  L +L ++  G N++S 
Sbjct: 200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS- 256

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            I   +  L+KL+ L + +N  +      L NLS+L       N +       IG  ++ 
Sbjct: 257 DINA-VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 196 FILNLGYNNLQGL 208
             L L  N++  +
Sbjct: 314 TTLFLSQNHITDI 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
            +L + +  +    P  L NL+ L  L++  N       N +  L +L+ +  G N++S 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
                +  LS+L +L L NN         +  L+ L       N I    P  + + S  
Sbjct: 280 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 196 FILNLGYNNLQ 206
              +     ++
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           T L +    +  T    L NLT L  L +  +N      + L  L ++  +  G N    
Sbjct: 91  TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS 146

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
            +   +  ++ L  L +  +      P  + NL+ L   +  YN I+   P  + + +S 
Sbjct: 147 DLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201

Query: 196 FILNLGYNNLQGL 208
                  N +  +
Sbjct: 202 HYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L      +    P    +L   +   +   +    +     +L  +  +     K++ 
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
           SI   I  L+ L+ L L  N  T   P  L NL KL       N I     S + N ++ 
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 196 FILNLGYNNLQGL 208
             L L  +N+  +
Sbjct: 113 RELYLNEDNISDI 125

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 7/151 (4%)

Query: 69  GSRHQRVTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127
           G     V  L+LS   +  ++       L  L  L++A+N            L  L+ + 
Sbjct: 262 GLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
             +N L     +    L K+  + L  N        +   L KL+  +   N +     +
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----T 375

Query: 188 RIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
            I    S   + L  N L  L  I     L+
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 4/138 (2%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKL 133
              L LS   +          L  L  L++        +  E    L  LR +  G +K+
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPI--PNSLFNLSKLEVFNAMYNVIDG-NIPSRIG 190
               P     L  L  LRLY    +  +       NL  L   +   N I    +    G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 191 NFSSPFILNLGYNNLQGL 208
             +S   ++   N +  +
Sbjct: 146 KLNSLKSIDFSSNQIFLV 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 89  IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI-PTWIGVLSKL 147
           +P  L        L ++ N  R    +    L +L+ +  G      +I       L  L
Sbjct: 19  VPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI--PSRIGNFSSPFILNLGYNNL 205
           + L L ++      P++   L  L      +  +   +       N  +   L+L  N +
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 206 QGL--LTIFGRLRLL 218
           + L     FG+L  L
Sbjct: 136 RSLYLHPSFGKLNSL 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 13/145 (8%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHL--PNELGQLRRLRFIRFGFNKLS 134
           L+L    +   + P     L  L  L +        +        L+ L  +    N++ 
Sbjct: 78  LDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 135 G-SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS--KLEVFNAMYNVIDGNIPSRIGN 191
              +    G L+ L+++   +N       + L  L    L  F+   N +   +    G 
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 192 FSSPF------ILNLGYNNLQGLLT 210
             +PF      IL++  N     +T
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 38/210 (18%), Positives = 71/210 (33%), Gaps = 32/210 (15%)

Query: 6   FFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIG 65
            F  +  LQ L +   A+TT++ + +     L+         ++   N + +        
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN----KLVTLPKINLTANL------- 405

Query: 66  ISCGSRHQRVTALNLSDIGLGG-TIPPHLGNLTFLVSLDVAHNNFRGHLPNEL-GQLRRL 123
                       ++LS+  L    I   L  +  L  L +  N F     ++   +   L
Sbjct: 406 ------------IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 124 RFIRFGFNKLSGSIPTWIGV-----LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY 178
             +  G N L  +  T +       LS LQ L L +N      P    +L+ L   +   
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 179 NVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
           N +   +       ++  IL++  N L   
Sbjct: 514 NRL-TVLSHND-LPANLEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 23/159 (14%)

Query: 73  QRVTALNLSDIGLGGTIPPH--LGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFG 129
             +  L L   GL   +       NL  L  LD++ N  R  +L    G+L  L+ I F 
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 130 FNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPNSLF------------------NLS 169
            N++       +  L    L    L  NS    +                       N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
            +++     N I  +    +           G++N++  
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 79  NLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP 138
            L               L+ L  L + HN      P     L  LR +    N+L+  + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 139 TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV 173
               + + L+ L +  N    P P+   +LS L++
Sbjct: 521 HND-LPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
                L    +  T+     +L  + +L       +    + +  L  L  I F  N+L+
Sbjct: 26  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 81

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
              P  +  L+KL  + + NN      P  L NL+ L       N I    P  + N ++
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 195 PFILNLGYNNLQGL 208
              L L  N +  +
Sbjct: 136 LNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           T L L    +    P  + +LT L  L   +N       + L  L  + ++  G N++S 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
             P  +  L+++  L L + ++T    N   N+S       +   +    P+ I +  S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSY 423

Query: 196 FILNLGYNNLQGL 208
              ++ +N     
Sbjct: 424 TEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           T L L++  L    P  + NL  L  L +  NN      + +  L +L+ + F  NK+S 
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD 345

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
              + +  L+ +  L   +N  +   P  L NL+++               +   N S  
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS-- 399

Query: 196 FILNLGYNNLQGLLTI 211
            I N   N    L+  
Sbjct: 400 -IPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L+L+   L       L +LT L  LD+A+N      P  L  L +L  ++ G N++S 
Sbjct: 224 DELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
             P  +  L+ L  L L  N      P  + NL  L      +N I    P  + + +  
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 196 FILNLGYNNLQGL 208
             L    N +  +
Sbjct: 334 QRLFFYNNKVSDV 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L LS   +  +    L  LT L  L    N      P  L  L  L  +    NK+S 
Sbjct: 137 NRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
              + +  L+ L++L   NN  +   P  L  L+ L+  +   N +       + + ++ 
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 196 FILNLGYNNLQGL 208
             L+L  N +  L
Sbjct: 246 TDLDLANNQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 74  RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNK 132
            + +  ++       I      L   +   +   N    +   +L Q+  L+  R G   
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS 60

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
           + G     +  L+ L  +   NN  T   P  L NL+KL       N I    P  + N 
Sbjct: 61  IDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 193 SSPFILNLGYNNLQGLLTI 211
           ++   L L  N +  +  +
Sbjct: 112 TNLTGLTLFNNQITDIDPL 130

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 11/145 (7%)

Query: 72  HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-------PNELGQLRRLR 124
              +  L+++           +     L +LD++ N   G         P +   L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDG 183
               G    SG          +LQ L L +NS             S+L   N  +  +  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 184 NIPSRIGNFSSPFILNLGYNNLQGL 208
            +P  +   +   +L+L YN L   
Sbjct: 268 -VPKGL--PAKLSVLDLSYNRLDRN 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
           +T + L++I +  T    +     +  L + + +      N +  L  L  +R     ++
Sbjct: 46  LTYITLANINV--TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVT 101

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
                 +  L+ L  L + +++    I   +  L K+   +  YN    +I   +     
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPE 160

Query: 195 PFILNLGYNNLQGL 208
              LN+ ++ +   
Sbjct: 161 LKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 94  GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153
             +  L  + +A+ N    L   +     ++ +       +   P  I  LS L+ LR+ 
Sbjct: 41  AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205
               T     +L  L+ L + +  ++  D +I ++I        ++L YN  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L +    +     P+L  LT L  LD++H+     +  ++  L ++  I   +N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVI 181
            I   +  L +L++L +  +         + +  KL    A    I
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           T L++S      +I   +  L  + S+D+++N     +   L  L  L+ +   F+ +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD 173

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTG 159
                I    KL  L  ++ +  G
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGG 195

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L++    L   +      L  +  + V ++       +    L+ L F+    N +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 138 ---PTWIGVLSKLQTLRLYNNSFT--GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNF 192
                  G    LQTL L  N           L  L  L   +   N     +P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWP 409

Query: 193 SSPFILNLGYNNLQGL-LTIFGRLRLL 218
                LNL    ++ +   I   L +L
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 74  RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNF---RGHLPNELGQLRRLRFIRFGF 130
           +V  + + +  +         +L  L  LD++ N             G    L+ +    
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 131 NKLSGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS 187
           N L  S+     +   L  L +L +  N+F  P+P+S     K+   N     I   + +
Sbjct: 371 NHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 188 RIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                 +  +L++  NNL        RL+ L
Sbjct: 428 --CIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
           + +L+LS   +       L     L  L +  +       +    L  L  +    N LS
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSR-IGNF 192
               +W G LS L+ L L  N +      SLF NL+ L+            I        
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 193 SSPFILNLGYNNLQGL-LTIFGRLRLL 218
           +S   L +   +L+         +R +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDI 174

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 66  ISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125
           +SC +        +        +IP  L     + SLD++ N        +L     L+ 
Sbjct: 2   LSCDASG----VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQV 54

Query: 126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDG- 183
           +    ++++         L  L+ L L +N  +  + +S F  LS L+  N M N     
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL 113

Query: 184 NIPSRIGNFSSPFILNLGYNNL 205
            + S   N ++   L +G    
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 1/130 (0%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           L + ++     I       LT L  L++   + R +    L  +R +  +    ++ +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 137 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPF 196
           +  +  +LS ++ L L + +      + L           +                   
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 197 ILNLGYNNLQ 206
              L  + ++
Sbjct: 248 RYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           LNLS  G+   +         L  LDV++NN        L +L+ L       NKL  ++
Sbjct: 415 LNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQELYI---SRNKLK-TL 466

Query: 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179
           P    +   L  +++  N            L+ L+      N
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR--------FGFNKLSGSIPT 139
            +  ++  L+ +   D   N      P+E   +  L  +              L   + T
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 140 WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI---PSRIGNFSSPF 196
              +L K++ + + N+       +   +L  LE  +   N++        +  G + S  
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 197 ILNLGYNNLQGL 208
            L L  N+L+ +
Sbjct: 365 TLVLSQNHLRSM 376

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 88  TIPPHL-GNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLS 145
           +IP +    +  L  LD+       ++       L  LR++      L   IP     L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LI 207

Query: 146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205
           KL  L L  N  +   P S   L  L+    + + I     +   N  S   +NL +NNL
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 206 QGL 208
             L
Sbjct: 268 TLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 74  RVTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
               LNL +  +   I  +   +L  L  L ++ N+ R         L  L  +    N+
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 133 LSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFN-AMYNVIDGNIPSRI 189
           L+ +IP      LSKL+ L L NN     IP+  F  +  L   +      +   I    
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS-YISEGA 180

Query: 190 -GNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
               S+   LNL   NL+ +      L  L
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKL 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 88  TIPPH-LGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLS 145
           +IP +    +  L+ LD+       ++       L  L+++  G   +   +P     L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LV 218

Query: 146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205
            L+ L +  N F    P S   LS L+    M + +     +     +S   LNL +NNL
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 206 QGL 208
             L
Sbjct: 279 SSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 74  RVTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
               LNL +  +   I      +L  L  L +  N+ R         L  L  +    N 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 133 LSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFN-AMYNVIDGNIPSRI 189
           L+  IP+     LSKL+ L L NN     IP+  F  +  L   +      ++  I    
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLE-YISEGA 191

Query: 190 -GNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                +   LNLG  N++ +      L  L
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGL 220

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             LNL    +     P+L  L  L  L+++ N+F    P     L  L+ +    +++S 
Sbjct: 199 KYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN 175
                   L+ L  L L +N+ +    +    L  L   +
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 46/220 (20%)

Query: 1   MRLSIFFVPMLFLQYLIMASLAMTTLNNLTADQSALLAFKARVVDYRSVLTNNWSISYPI 60
             L    + M  L  L+     +   + L A            VD       +   S  +
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKA------------VDPMRAAYLDDLRSKFL 430

Query: 61  CTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQL 120
                +       RV  L+L+   L  T+  HL  L  +  LD++HN  R          
Sbjct: 431 LENSVLKMEYADVRV--LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR---------- 476

Query: 121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV 180
                          ++P  +  L  L+ L+  +N+    +   + NL +L+      N 
Sbjct: 477 ---------------ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNR 519

Query: 181 IDGNIPS--RIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
           +     +   + +     +LNL  N+L     I  RL  +
Sbjct: 520 LQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 4/133 (3%)

Query: 78  LNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS 136
           L + D  L   I       L  L  L +   N        L  L  L  +R     ++  
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 137 IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR-IGNFSSP 195
                  L +L+ L + +  +   +  +      L   +  +  +   +P   + +    
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250

Query: 196 FILNLGYNNLQGL 208
             LNL YN +  +
Sbjct: 251 RFLNLSYNPISTI 263

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 67  SCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFI 126
            C ++ + V             +P  +   T    LD+  N  +    +E      L  +
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNI 185
               N +S   P     L  L+TL L +N     IP  +F  LS L   +   N I   +
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKI-VIL 119

Query: 186 PSRI-GNFSSPFILNLGYNNLQGL 208
              +  +  +   L +G N+L  +
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYI 143

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 88  TIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK 146
           +IP   L +L  L+ L + H N          +L RL+ +         ++         
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 147 LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI-GNFSSPFILNLGYNNL 205
           L +L + + + T     ++ +L  L   N  YN I   I   +         + L    L
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 206 QGL 208
             +
Sbjct: 285 AVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 78  LNLSDIGLGG----TIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK 132
           LNL+ + +       +P   + +L +L  L++++N       + L +L RL+ I+    +
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYN 179
           L+   P     L+ L+ L +  N  T  +  S+F ++  LE      N
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSN 330

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 25/139 (17%), Positives = 39/139 (28%), Gaps = 11/139 (7%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             + L    +             L  L +  N            L  L  +    N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 136 SIP--TWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNF 192
           S+   T+ G L +L TL L        +   LF  L+ L+      N +   +P     F
Sbjct: 95  SVDPATFHG-LGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDT--F 149

Query: 193 SSPF---ILNLGYNNLQGL 208
                   L L  N +  +
Sbjct: 150 RDLGNLTHLFLHGNRISSV 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 11/151 (7%)

Query: 76  TALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKL 133
             L+LSD     ++ P     L  L +L +     +  L       L  L+++    N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 134 SGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI-GN 191
             ++P      L  L  L L+ N  +     +   L  L+      N +  ++      +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 192 FSSPFILNLGYNNLQ----GLLTIFGRLRLL 218
                 L L  NNL       L     L+ L
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYL 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 5/123 (4%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 147
            +P  +        + +  N             R L  +    N L+         L+ L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 148 QTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI-GNFSSPFILNLGYNNL 205
           + L L +N+    +  + F  L +L   +     +   +   +    ++   L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNAL 141

Query: 206 QGL 208
           Q L
Sbjct: 142 QAL 144

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV---L 144
            +P H+        +D++ N+          +L+ L+F++         I         L
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGL 78

Query: 145 SKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVI-DGNIPSRI-GNFSSPFILNLG 201
           S L  L+L  N F   +    F  L+ LEV       +    +        +S  +L L 
Sbjct: 79  SSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 202 YNNLQGLL--TIFGRLRLL 218
            NN++ +   + F  +R  
Sbjct: 138 DNNIKKIQPASFFLNMRRF 156

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 79  NLSDIGLGG----TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
            L  + L       I   L +L  L SL + +N     +   L +L +L  +    N++S
Sbjct: 110 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS 166

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
             I   +  L+KLQ L L  N  +     +L  L  L+V             +   N   
Sbjct: 167 -DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 195 PFILNLGYNNLQGLLTI 211
           P  +     +L     I
Sbjct: 223 PNTVKNTDGSLVTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 66  ISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125
               +    +  +  ++  +  ++   +  L  +  L +  N     +   L  L+ L +
Sbjct: 36  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGW 91

Query: 126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI 185
           +    NK+   + + +  L KL++L L +N  +  I   L +L +LE      N I  +I
Sbjct: 92  LFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKIT-DI 146

Query: 186 PSRIGNFSSPFILNLGYNNLQGL 208
              +   +    L+L  N +  +
Sbjct: 147 TV-LSRLTKLDTLSLEDNQISDI 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 95  NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQTLRL 152
           +L  L+ LD++H + R         L  L  ++   N    +     +   L  L  L L
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDL 182

Query: 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
                    P +  +LS L+V N  +N             +S  +L+   N++   
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 88  TIPPH-LGNLTFLVSLDVAHNN--FRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 144
           ++P      LT L  L ++ N   F+G           L+++   FN +  ++ +    L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 100

Query: 145 SKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI-GNFSSPFILNLGY 202
            +L+ L   +++       S+F +L  L   +  +        + I    SS  +L +  
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAG 159

Query: 203 NNLQGLL--TIFGRLRLL 218
           N+ Q      IF  LR L
Sbjct: 160 NSFQENFLPDIFTELRNL 177

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 65  GISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLR 124
                +    +T L+    G+  T    +  L  L+ L++  N     L   L  L ++ 
Sbjct: 33  DTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKIT 88

Query: 125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGN 184
            +    N L  ++   I  L  ++TL L +   T   P  L  LS L+V     N I  N
Sbjct: 89  ELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-N 143

Query: 185 IPSRIGNFSSPFILNLGYNNLQGL 208
           I   +   ++   L++G   +  L
Sbjct: 144 ISP-LAGLTNLQYLSIGNAQVSDL 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150
             L NLT +  L+++ N  +    + +  L+ ++ +     +++   P  +  LS LQ L
Sbjct: 79  APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134

Query: 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
            L  N  T  I   L  L+ L+  +     +  ++   + N S    L    N +  +
Sbjct: 135 YLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDI 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
           T L LS   L       +  L  + +LD+            L  L  L+ +    N+++ 
Sbjct: 88  TELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN 143

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
             P  +  L+ LQ L + N   +   P  L NLSKL    A  N I  +I   + +  + 
Sbjct: 144 ISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNL 197

Query: 196 FILNLGYNNLQGL 208
             ++L  N +  +
Sbjct: 198 IEVHLKNNQISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 91  PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150
             L  LT L  L + +      L   L  L +L  ++   NK+S  I   +  L  L  +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEV 200

Query: 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210
            L NN  +   P  L N S L +       I         N   P ++           T
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPAT 258

Query: 211 I 211
           I
Sbjct: 259 I 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 70  SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129
            +   +T+L+  +  +  T    +  LT L  L    NN       +L Q   L ++   
Sbjct: 39  EQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACD 93

Query: 130 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI 189
            NKL+ ++   +  L+KL  L    N  T    +    L+ L         ID      +
Sbjct: 94  SNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID------V 144

Query: 190 GNFSSPFILNLGYNNLQGLLTIFGRLRL 217
            + +    L+   N     L +  + +L
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQL 172

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 76  TALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKL 133
            +L LS   L   I       +  L  LD++ N+    L       L+ L  +    N +
Sbjct: 67  HSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

Query: 134 SGSIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLF----NLSKLEVFNAMYNVIDGNIP 186
              +         +++LQ L L  N  +   P  L      L KL + +   N +     
Sbjct: 125 V-VVDR--NAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 187 SRIGNFSSPFILNLGYNN 204
           + +    +     L  +N
Sbjct: 181 TDLQKLPAWVKNGLYLHN 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             L+LS   L  ++P     L  L  LDV+ N         L  L  L+ +    N+L  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 136 SIPTWIGV---LSKLQTLRLYNNSFTGPIPNSLF-NLSKLE 172
           ++P   G+     KL+ L L NN+ T  +P  L   L  L+
Sbjct: 138 TLPP--GLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLD 175

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 95  NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLY 153
            +  L  + +A  N    +P  L     L  +    NK++  +       L+ L  L L 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208
            NS +     SL N   L   +   N +   +P  + +     ++ L  NN+  +
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 33/158 (20%)

Query: 88  TIPPHLGNLTFLVSLDVAHNNFR-------GHLPN----ELGQ---------------LR 121
            +P  +     L  L V  N            L      ELG                ++
Sbjct: 114 ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 122 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVI 181
           +L +IR     ++ +IP   G+   L  L L  N  T     SL  L+ L      +N I
Sbjct: 172 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 182 DGNIPSRI-GNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
              + +    N      L+L  N L  +       + +
Sbjct: 229 S-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 75  VTALNLSDIGLGGTIPPH-LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL 133
           V +L+LS+  +   I    L     L +L +  N       +    L  L  +   +N L
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI-GN 191
           S    +W   LS L  L L  N +      SLF +L+KL++           I  +    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 192 FSSPFILNLGYNNLQGL 208
            +    L +  ++LQ  
Sbjct: 173 LTFLEELEIDASDLQSY 189

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 88  TIPPH--LGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVL 144
           T+       +LT L  L V + +    +  +    L  L  +    + L    P  +  +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 145 SKLQTLRLYNNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRI--GNFSSPF----- 196
             +  L L+       +        S +E        +D    S +  G  +S       
Sbjct: 198 QNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 197 -ILNLGYNNLQGLLTIFGRLRLL 218
             + +   +L  ++ +  ++  L
Sbjct: 257 RNVKITDESLFQVMKLLNQISGL 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 36/149 (24%)

Query: 72  HQR-VTALNLSD-IGLGGTIPPHLGNLTFLVSLDVAHNNFRG-HLPN----ELGQLRRLR 124
           H+  V   N+         IPP+L    +         +  G HL N    E   L R+ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMTLFRMV 496

Query: 125 FIRFGF--NKLSGSIPTWI---GVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179
           F+ F F   K+      W     +L+ LQ L+ Y        P           +  + N
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP----------KYERLVN 546

Query: 180 VIDGNIPSRIGN--FSSPF--ILNLGYNN 204
            I   +P +I      S +  +L +    
Sbjct: 547 AILDFLP-KIEENLICSKYTDLLRIALMA 574

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 88  TIPP-HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSK 146
            I    L   + L  L + HN  R      L  L  LR +    NKLS  +P  +  L  
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265

Query: 147 LQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID 182
           LQ + L+ N+ T  +  + F      V  A YN I 
Sbjct: 266 LQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 32/169 (18%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             +  SD+GL   +P  +        LD+ +N+      ++   L+ L  +    NK+S 
Sbjct: 36  RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 136 -----------------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLF-NLSKL 171
                                   IP    + S L  LR+++N     +P  +F  L  +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRK-VPKGVFSGLRNM 149

Query: 172 EVFNAMYNVI-DGNIPSRIGNFSSPFILNLGYNNLQGL-LTIFGRLRLL 218
                  N + +        +      L +    L G+   +   L  L
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 95  NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV---LSKLQTLR 151
            L+ L  L     N        +G L+ L+ +    N +  S          L+ L+ L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLD 155

Query: 152 LYNNSFTGPIPNSLFNLSKLEVFNA----MYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
           L +N         L  L ++ + N       N ++  I            L L  N L+ 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

Query: 208 L-LTIFGRLRLL 218
           +   IF RL  L
Sbjct: 215 VPDGIFDRLTSL 226

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 7/148 (4%)

Query: 75  VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134
           +    LS             + +    L+   N F   +      L+RL+ +    N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 135 GSIPTWIGVLSKLQTLRLYNNSFT----GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIG 190
            +      +   + +L   + S           +      + V N   N++ G++   + 
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 191 NFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                 +L+L  N +  +      L+ L
Sbjct: 450 --PKVKVLDLHNNRIMSIPKDVTHLQAL 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.42
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.64

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.9e-32  Score=219.29  Aligned_cols=186  Identities=30%  Similarity=0.523  Sum_probs=167.7

Q ss_pred             CCChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCc--cceeeeCCCC--CcEEEEEcCCCCCcc--cCCcCCCCCCCCC
Q 045729           27 NNLTADQSALLAFKARVVDYRSVLTNNWSISYPICT--WIGISCGSRH--QRVTALNLSDIGLGG--TIPPHLGNLTFLV  100 (218)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~l~l~~~~l~~--~~~~~l~~l~~L~  100 (218)
                      .|.++|..||++||+++.++. .+.+ |..+.++|.  |.||.|+...  .+++.|+++++.+++  .+|+.+.++++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            367899999999999997665 6677 988778998  9999998643  789999999999998  8999999999999


Q ss_pred             EEEccC-CcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729          101 SLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN  179 (218)
Q Consensus       101 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N  179 (218)
                      +|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 9999899999999999999999999999899999999999999999999999889999999999999999999


Q ss_pred             cccccCCccCCCCC-CCCEEEccCCcCcccCCC-CCC
Q 045729          180 VIDGNIPSRIGNFS-SPFILNLGYNNLQGLLTI-FGR  214 (218)
Q Consensus       180 ~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~~~  214 (218)
                      .+++.+|..++.++ +|++|++++|.+++.+|. ++.
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            99989999999888 899999999998876664 444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1e-28  Score=220.03  Aligned_cols=183  Identities=24%  Similarity=0.340  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCccceeeeCCCCCcEEEEEcCCCCCccc---CC--------------
Q 045729           28 NLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGT---IP--------------   90 (218)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~---~~--------------   90 (218)
                      +.++|+.||++||+++.++. .+.+ |..+.+||.|.||.|+  .++|+.|+++++.+.|.   +|              
T Consensus         9 ~~~~~~~all~~k~~~~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             CCHHHHHHHHHHHhhCCCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            35789999999999998776 7777 9877899999999998  48999999999998876   44              


Q ss_pred             ---------cCCCCCCCCCEEEccCCcccccCCc--ccCCCCCCcEEEccCccccccCchhh-cCCCCCCEEEccCCccc
Q 045729           91 ---------PHLGNLTFLVSLDVAHNNFRGHLPN--ELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYNNSFT  158 (218)
Q Consensus        91 ---------~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~  158 (218)
                               +.+..+++|++|++++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ ..+++|++|++++|.++
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                     4566777777777777777776776  67777777777777777766666544 56666666666666666


Q ss_pred             CCCCcc---ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729          159 GPIPNS---LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       159 ~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      +..|..   +.++++|++|++++|.+++..|  +..+++|++|++++|.+++.+|.+++++
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~  223 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS  223 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCC
Confidence            544443   3444444444444444443222  1344445555555555544444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.8e-29  Score=219.47  Aligned_cols=187  Identities=24%  Similarity=0.362  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHHhccCCCCccCC-------CCCCCCCCCcc---ceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCC
Q 045729           30 TADQSALLAFKARVVDYRSVLTN-------NWSISYPICTW---IGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFL   99 (218)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L   99 (218)
                      ..|+.||.++|.++.++.|...+       +|+.+.++|.|   .||.|+.. ++|+.|+++++++.|.+|+.+.++++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence            47999999999999766655333       59988899999   99999864 899999999999999999999999999


Q ss_pred             CEEEccCCc-----------------------------------------------------------------------
Q 045729          100 VSLDVAHNN-----------------------------------------------------------------------  108 (218)
Q Consensus       100 ~~L~l~~n~-----------------------------------------------------------------------  108 (218)
                      ++|++++|.                                                                       
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~  187 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ  187 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred             eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence            999999884                                                                       


Q ss_pred             -------ccccCCcccCCCCCCcEEEccCcccccc-----------------Cchhhc--CCCCCCEEEccCCcccCCCC
Q 045729          109 -------FRGHLPNELGQLRRLRFIRFGFNKLSGS-----------------IPTWIG--VLSKLQTLRLYNNSFTGPIP  162 (218)
Q Consensus       109 -------l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~p  162 (218)
                             +++ +|..++++++|++|++++|.+++.                 +|..++  .+++|++|++++|.+.+.+|
T Consensus       188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p  266 (636)
T 4eco_A          188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP  266 (636)
T ss_dssp             TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred             hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence                   344 788899999999999999999975                 899988  99999999999999999999


Q ss_pred             ccccCCCCCcEEecccCc-ccc-cCCccCCCC------CCCCEEEccCCcCcccCC--CCCCCCCC
Q 045729          163 NSLFNLSKLEVFNAMYNV-IDG-NIPSRIGNF------SSPFILNLGYNNLQGLLT--IFGRLRLL  218 (218)
Q Consensus       163 ~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p--~~~~l~~L  218 (218)
                      ..+.++++|++|++++|+ ++| .+|..++.+      ++|++|++++|.++..++  .++++++|
T Consensus       267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L  332 (636)
T 4eco_A          267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL  332 (636)
T ss_dssp             TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTC
T ss_pred             HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCC
Confidence            999999999999999998 887 777777665      778888888888775444  36665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.8e-28  Score=194.69  Aligned_cols=185  Identities=21%  Similarity=0.283  Sum_probs=134.1

Q ss_pred             CChHHHHHHHHHHHhcc-CCCCccCCCC----CCCCCCCccceeeeC--------CCCCcEEEEEcCCCCCcccCCcCCC
Q 045729           28 NLTADQSALLAFKARVV-DYRSVLTNNW----SISYPICTWIGISCG--------SRHQRVTALNLSDIGLGGTIPPHLG   94 (218)
Q Consensus        28 ~~~~~~~~l~~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~--------~~~~~l~~l~l~~~~l~~~~~~~l~   94 (218)
                      ...+|..||++||.++. ++.++... |    ....++|.|.|+.|.        ...++++.|++++|.++ .+|+.+.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            34678999999999884 55555666 8    345689999999994        12467888888888887 7777788


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccC-------
Q 045729           95 NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFN-------  167 (218)
Q Consensus        95 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~-------  167 (218)
                      ++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            8888888888888887 78877888888888888888887 77877777788888888777666666665443       


Q ss_pred             --CCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          168 --LSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       168 --l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                        +++|++|++++|.++ .+|..++.+++|++|++++|.+++.++.++.+++
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence              666666666666665 5565566666666666666666655444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=9.9e-28  Score=214.96  Aligned_cols=183  Identities=25%  Similarity=0.400  Sum_probs=150.6

Q ss_pred             ChHHHHHHHHHHHhccCCCCccCCCCCCCC-----CC--Ccc------------ceeeeCCCCCcEEEEEcCCCCCcccC
Q 045729           29 LTADQSALLAFKARVVDYRSVLTNNWSISY-----PI--CTW------------IGISCGSRHQRVTALNLSDIGLGGTI   89 (218)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~l~l~~~~l~~~~   89 (218)
                      ..+|+.||++||+++.+++      |..++     ++  |.|            .||.|+. .++|+.|+|+++++.|.+
T Consensus       267 ~~~d~~ALl~~k~~l~~~~------W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGKN------WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGGG------CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred             chHHHHHHHHHHHHcCCCC------CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence            3579999999999997663      54332     44  999            9999986 589999999999999999


Q ss_pred             CcCCCCCCCCCEEEc-cCCccccc--------------------------------------------------------
Q 045729           90 PPHLGNLTFLVSLDV-AHNNFRGH--------------------------------------------------------  112 (218)
Q Consensus        90 ~~~l~~l~~L~~L~l-~~n~l~~~--------------------------------------------------------  112 (218)
                      |+.+.++++|++|++ ++|.+.|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 77755433                                                        


Q ss_pred             --------------------CCcccCCCCCCcEEEccCccccc-----------------cCchhhc--CCCCCCEEEcc
Q 045729          113 --------------------LPNELGQLRRLRFIRFGFNKLSG-----------------SIPTWIG--VLSKLQTLRLY  153 (218)
Q Consensus       113 --------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~  153 (218)
                                          +|..+.++++|++|++++|.+++                 .+|..++  .+++|++|+++
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                78888999999999999999997                 3888877  99999999999


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCc-ccc-cCCccCCCCC-------CCCEEEccCCcCcccCC--CCCCCCCC
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNV-IDG-NIPSRIGNFS-------SPFILNLGYNNLQGLLT--IFGRLRLL  218 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p--~~~~l~~L  218 (218)
                      +|.+.+.+|..+.++++|+.|++++|+ ++| .+|..++.++       +|++|++++|.++.+++  .++++++|
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L  575 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL  575 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTC
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCC
Confidence            999998999999999999999999998 887 6776554443       77777777777775444  35555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.91  E-value=2.3e-23  Score=160.22  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=137.1

Q ss_pred             CCCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCc
Q 045729           54 WSISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLR  124 (218)
Q Consensus        54 w~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  124 (218)
                      |....+.|.|.++.|...         .++++.|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|+
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            667789999999999742         36799999999999988888999999999999999999844445678999999


Q ss_pred             EEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729          125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       125 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      +|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            9999999999555556789999999999999999 889999999999999999999996555678899999999999999


Q ss_pred             CcccCC
Q 045729          205 LQGLLT  210 (218)
Q Consensus       205 l~~~~p  210 (218)
                      +....+
T Consensus       171 ~~c~c~  176 (229)
T 3e6j_A          171 WDCECR  176 (229)
T ss_dssp             BCTTBG
T ss_pred             ccCCcc
Confidence            886544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=9.8e-23  Score=158.68  Aligned_cols=146  Identities=21%  Similarity=0.211  Sum_probs=123.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            56889999999999877778899999999999999999766777889999999999999998555567788999999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      ++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++.++. +..+++|
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            99999955555578899999999999999855555788999999999999999988774 6666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.7e-23  Score=154.84  Aligned_cols=156  Identities=18%  Similarity=0.163  Sum_probs=131.8

Q ss_pred             CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729           57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR  127 (218)
Q Consensus        57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  127 (218)
                      ..+.|.|.++.|...         .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            456789999999642         35799999999999966666788999999999999999955455678999999999


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            99999995545567899999999999999996556667899999999999999996555568899999999999998877


Q ss_pred             cCCCC
Q 045729          208 LLTIF  212 (218)
Q Consensus       208 ~~p~~  212 (218)
                      ..|.+
T Consensus       163 ~~~~l  167 (208)
T 2o6s_A          163 TCPGI  167 (208)
T ss_dssp             CTTTT
T ss_pred             CCCCH
Confidence            66543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=2.9e-22  Score=153.16  Aligned_cols=152  Identities=17%  Similarity=0.213  Sum_probs=134.3

Q ss_pred             CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      ++..+.|.|..+.|...         .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++
T Consensus         5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B            5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            34557789999999642         257999999999999777778999999999999999999777889999999999


Q ss_pred             EEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729          126 IRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       126 L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      |++++|.++ .+|. .|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus        85 L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           85 LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            999999999 5554 57889999999999999998778889999999999999999996666679999999999999998


Q ss_pred             Ccc
Q 045729          205 LQG  207 (218)
Q Consensus       205 l~~  207 (218)
                      +..
T Consensus       164 ~~c  166 (220)
T 2v9t_B          164 FIC  166 (220)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6e-22  Score=155.81  Aligned_cols=144  Identities=22%  Similarity=0.191  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            35778888888887555557777888888888888777333334566777777777777777433345566667777777


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLR  216 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~  216 (218)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. |.+++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT  181 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence            77766644444555666666666666666533333355555566666665555554443 44433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=152.56  Aligned_cols=153  Identities=19%  Similarity=0.158  Sum_probs=134.4

Q ss_pred             CCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           56 ISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        56 ~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      +..+.|.|..+.|...         ...++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            4456788999988642         2467899999999997655 35789999999999999999766778999999999


Q ss_pred             EEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729          126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       126 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      |++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99999999966667799999999999999999987788999999999999999999987789999999999999999998


Q ss_pred             ccc
Q 045729          206 QGL  208 (218)
Q Consensus       206 ~~~  208 (218)
                      .+.
T Consensus       166 ~c~  168 (220)
T 2v70_A          166 NCN  168 (220)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=1.5e-22  Score=180.45  Aligned_cols=96  Identities=30%  Similarity=0.520  Sum_probs=69.7

Q ss_pred             CCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEE
Q 045729          120 LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILN  199 (218)
Q Consensus       120 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  199 (218)
                      +++|++|++++|+++|.+|..++.+++|++|++++|.++|.+|..++++++|+.||+++|+++|.+|..++.+++|++|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            34566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccCCcCcccCCCCCCC
Q 045729          200 LGYNNLQGLLTIFGRL  215 (218)
Q Consensus       200 L~~N~l~~~~p~~~~l  215 (218)
                      +++|+++|.+|..+.+
T Consensus       711 ls~N~l~g~iP~~~~~  726 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQF  726 (768)
T ss_dssp             CCSSEEEEECCSSSSG
T ss_pred             CcCCcccccCCCchhh
Confidence            7777777777764443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=2.6e-22  Score=161.17  Aligned_cols=138  Identities=30%  Similarity=0.480  Sum_probs=103.6

Q ss_pred             CCcEEEEEcCC-CCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSD-IGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      .+++++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            46788888884 77877788888888888888888888877788778888888888888888877777778888888888


Q ss_pred             EccCCcccCCCCccccCCC-CCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          151 RLYNNSFTGPIPNSLFNLS-KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++|.+++.+|
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            8888888777777777776 777777777777766666655554 5555555555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=159.99  Aligned_cols=161  Identities=19%  Similarity=0.247  Sum_probs=132.2

Q ss_pred             CCCCCCCCccceeeeCC-----------CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCC
Q 045729           54 WSISYPICTWIGISCGS-----------RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRR  122 (218)
Q Consensus        54 w~~~~~~c~w~gv~c~~-----------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  122 (218)
                      |......|.|.++ |+.           -.+++++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            4455677888876 532           1257999999999999766668999999999999999999777778999999


Q ss_pred             CcEEEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCc--cccCCCCCcEEecccCc-ccccCCccCCCCCCCCEE
Q 045729          123 LRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFIL  198 (218)
Q Consensus       123 L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L  198 (218)
                      |++|++++|+++ .+|. .+..+++|++|++++|.++ .+|.  .+..+++|++|++++|. +.+..+..++.+++|++|
T Consensus       102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            999999999999 5555 4889999999999999999 5555  68889999999999994 665556788999999999


Q ss_pred             EccCCcCcccCCC-CCCCCC
Q 045729          199 NLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       199 ~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++++|.+++.+|. ++.+++
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~  199 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQN  199 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSE
T ss_pred             ECCCCCcCccCHHHHhcccc
Confidence            9999999988665 776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=1.1e-21  Score=158.53  Aligned_cols=143  Identities=19%  Similarity=0.149  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC--------------------------------cccCCC
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP--------------------------------NELGQL  120 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--------------------------------~~~~~l  120 (218)
                      ++++.|++++|.++ .+|+.+.++++|++|++++|++.+.+|                                ..+..+
T Consensus       127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l  205 (328)
T 4fcg_A          127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL  205 (328)
T ss_dssp             TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred             CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence            45666666666665 555555555555555555555444444                                444444


Q ss_pred             CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729          121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL  200 (218)
Q Consensus       121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  200 (218)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|++|++
T Consensus       206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            55555555555554 34444555555555555555555555555555555555555555555555555555556666666


Q ss_pred             cCCcCcccCCC-CCCCCC
Q 045729          201 GYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       201 ~~N~l~~~~p~-~~~l~~  217 (218)
                      ++|++.+.+|. ++++++
T Consensus       285 ~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          285 RGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             TTCTTCCCCCGGGGGSCT
T ss_pred             CCCCchhhccHHHhhccC
Confidence            66555555444 554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=1.3e-20  Score=149.03  Aligned_cols=145  Identities=22%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ++++.|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            445555555555554444455555555555555554 4433344455555555555555555543344455555555555


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.+|. ++++++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence            555555533333455555555666665555533333455556666666666666555433 444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=2e-20  Score=147.31  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            34444444444444333333444445555555555444333333444445555555555444322333344445555555


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..|
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            5554443333333444455555555555543333334444555555555554444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.6e-20  Score=147.85  Aligned_cols=145  Identities=22%  Similarity=0.188  Sum_probs=127.2

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            5789999999999985 3 4688999999999999999966666689999999999999999966666689999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      +++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++.++. ++.+++|
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence            999999966666678999999999999999966666789999999999999999998886 6776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=3.9e-21  Score=164.83  Aligned_cols=157  Identities=20%  Similarity=0.215  Sum_probs=136.0

Q ss_pred             CCccceeeeCCC-----------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEc
Q 045729           60 ICTWIGISCGSR-----------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRF  128 (218)
Q Consensus        60 ~c~w~gv~c~~~-----------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  128 (218)
                      .|.|.|+ |+.+           .+++++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4888887 6521           257999999999999888889999999999999999999777788999999999999


Q ss_pred             cCccccccCchhhcCCCCCCEEEccCCcccC-CCCccccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCc
Q 045729          129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       129 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~  206 (218)
                      ++|++++..|..++.+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..++++++|++|++++|.++
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            9999996666679999999999999999985 357788999999999999999555665 57999999999999999999


Q ss_pred             ccCCC-CCCCCC
Q 045729          207 GLLTI-FGRLRL  217 (218)
Q Consensus       207 ~~~p~-~~~l~~  217 (218)
                      +.+|. ++.+++
T Consensus       162 ~~~~~~l~~l~~  173 (549)
T 2z81_A          162 NYQSQSLKSIRD  173 (549)
T ss_dssp             EECTTTTTTCSE
T ss_pred             ccChhhhhcccc
Confidence            87665 666553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=6.1e-21  Score=165.63  Aligned_cols=139  Identities=19%  Similarity=0.136  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ..+++||+++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            57999999999999777778999999999999999999666678999999999999999999544567899999999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      ++|.+++..+..+.++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9999996656678999999999999999975 4678889999999999999999987664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=4.5e-20  Score=146.00  Aligned_cols=138  Identities=22%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCC-CcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIG-LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ++++.|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            455555555554 4433344555555556666655555544444455555556666655555533333455555556666


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      +++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            65555553333345555555566665555555555555555555666665555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=1e-20  Score=151.05  Aligned_cols=160  Identities=21%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--CCcccCCCCCCcE
Q 045729           57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--LPNELGQLRRLRF  125 (218)
Q Consensus        57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~  125 (218)
                      ..+.|.|.++.|...         .++++.|++++|.++...+..+.++++|++|++++|.++..  .+..+..+++|++
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            446689999999742         25799999999999843334478889999999988887622  2333334455555


Q ss_pred             EEccCccccccCch-------------------------hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCc
Q 045729          126 IRFGFNKLSGSIPT-------------------------WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV  180 (218)
Q Consensus       126 L~l~~n~l~~~~p~-------------------------~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~  180 (218)
                      |++++|.++ .+|.                         .+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            555555444 3333                         44455555555555555554445555556666666666666


Q ss_pred             ccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          181 IDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       181 l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      +++ .+|..+..+++|++|++++|.+++.+|. ++.+++
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            654 3556666666667777777766666443 555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=6e-20  Score=140.28  Aligned_cols=140  Identities=23%  Similarity=0.275  Sum_probs=123.1

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      +.++.++++++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46899999988 6777664  78999999999999666668999999999999999999777889999999999999999


Q ss_pred             cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      .+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++. +..+++|
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            99944444568899999999999999987788999999999999999999998876 7776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=7.8e-20  Score=143.70  Aligned_cols=147  Identities=22%  Similarity=0.184  Sum_probs=119.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            57899999999999855455568899999999999999855555678899999999999999866666788899999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.++. +..+++|
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            999999855555578889999999999999865555688899999999999999887775 6666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=5.9e-20  Score=142.90  Aligned_cols=139  Identities=20%  Similarity=0.167  Sum_probs=123.4

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            57899999999999987788899999999999999999966666788999999999999999955555678999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+...
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            99999996556678899999999999999996666688999999999999999987633

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.84  E-value=2.6e-20  Score=139.39  Aligned_cols=130  Identities=22%  Similarity=0.263  Sum_probs=107.4

Q ss_pred             EEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           77 ALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        77 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      .+++++++++ .+|..+.  .++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus        12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4666777775 6776554  3889999999999854443 3788999999999999998777888889999999999999


Q ss_pred             cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      .+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            998777777888999999999999999888888899999999999999887643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.3e-20  Score=157.72  Aligned_cols=154  Identities=18%  Similarity=0.132  Sum_probs=119.3

Q ss_pred             cceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccc
Q 045729           63 WIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL  133 (218)
Q Consensus        63 w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  133 (218)
                      |..+.|...         ..+++.|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            566777531         35788899999998877778888888999999998888877788888888889999988888


Q ss_pred             cccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-C
Q 045729          134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-F  212 (218)
Q Consensus       134 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~  212 (218)
                      ++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++. +
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence            843334567888888888888888876777788888888888888888766677777788888888888877765543 4


Q ss_pred             CCCC
Q 045729          213 GRLR  216 (218)
Q Consensus       213 ~~l~  216 (218)
                      .+++
T Consensus       173 ~~l~  176 (477)
T 2id5_A          173 SHLH  176 (477)
T ss_dssp             TTCT
T ss_pred             cccC
Confidence            4333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1.7e-20  Score=157.33  Aligned_cols=156  Identities=20%  Similarity=0.244  Sum_probs=133.2

Q ss_pred             CCCccce--eeeCCC--------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccC-CcccCCCCCCcEEE
Q 045729           59 PICTWIG--ISCGSR--------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-PNELGQLRRLRFIR  127 (218)
Q Consensus        59 ~~c~w~g--v~c~~~--------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~  127 (218)
                      ..|.|.+  +.|...        .+++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            3444444  777542        267999999999999888999999999999999999997555 45689999999999


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCcc--ccCCCCCcEEecccCcccccCCcc-CCCCCCCCEEEccCCc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS--LFNLSKLEVFNAMYNVIDGNIPSR-IGNFSSPFILNLGYNN  204 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~  204 (218)
                      +++|.+++..|..+..+++|++|++++|.+++..|..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            9999999777889999999999999999998755554  889999999999999999777766 7899999999999999


Q ss_pred             CcccCCC-CCC
Q 045729          205 LQGLLTI-FGR  214 (218)
Q Consensus       205 l~~~~p~-~~~  214 (218)
                      +++.+|. ++.
T Consensus       166 l~~~~~~~l~~  176 (455)
T 3v47_A          166 VKSICEEDLLN  176 (455)
T ss_dssp             BSCCCTTTSGG
T ss_pred             ccccChhhhhc
Confidence            9988765 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=2.2e-20  Score=161.98  Aligned_cols=144  Identities=18%  Similarity=0.166  Sum_probs=129.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .+++++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            36899999999999988888999999999999999999977788899999999999999999977788999999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL  215 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l  215 (218)
                      +++|.+++..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|.+++.+|. ++.+
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  176 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL  176 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence            99999996666789999999999999999985 5799999999999999999999988765 5443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=5e-20  Score=150.64  Aligned_cols=155  Identities=23%  Similarity=0.264  Sum_probs=132.0

Q ss_pred             CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCCcccccCCcccCCCCCCc
Q 045729           55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHNNFRGHLPNELGQLRRLR  124 (218)
Q Consensus        55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  124 (218)
                      ++..+.|.+..+.|...         ...++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|+
T Consensus        12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           12 CPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            34556788888888642         34688999999999977777777 999999999999999966667899999999


Q ss_pred             EEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccC----CCCCCCCEEEc
Q 045729          125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI----GNFSSPFILNL  200 (218)
Q Consensus       125 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L  200 (218)
                      +|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .+|..+    ..+++|++|++
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence            9999999999555567899999999999999999777888999999999999999999 566544    57999999999


Q ss_pred             cCCcCcccCC
Q 045729          201 GYNNLQGLLT  210 (218)
Q Consensus       201 ~~N~l~~~~p  210 (218)
                      ++|++++.++
T Consensus       171 ~~N~l~~l~~  180 (361)
T 2xot_A          171 SSNKLKKLPL  180 (361)
T ss_dssp             CSSCCCCCCH
T ss_pred             CCCCCCccCH
Confidence            9999997664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=1.5e-19  Score=138.12  Aligned_cols=140  Identities=22%  Similarity=0.209  Sum_probs=122.3

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  154 (218)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            37999999998 5777654  467899999999996645 3478999999999999999966666899999999999999


Q ss_pred             CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      |.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|. |..+++|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            999977777789999999999999999988889999999999999999999998765 7777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=6.8e-20  Score=145.63  Aligned_cols=141  Identities=26%  Similarity=0.234  Sum_probs=88.1

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++..+ . ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++|+
T Consensus        54 l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            3455566666666553222 1 45666666666666666 5666666677777777777777644445566777777777


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL  215 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l  215 (218)
                      +++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++..++.+...
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence            7777777444444566677777777777776333334566777777777777777655554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=2.1e-19  Score=138.10  Aligned_cols=147  Identities=22%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             cceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc
Q 045729           63 WIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG  142 (218)
Q Consensus        63 w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  142 (218)
                      |..-.|.     .+.++.++++++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|+++...+..+.
T Consensus        14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            4445664     346899999987 7777654  8999999999999977788899999999999999999844445678


Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          143 VLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       143 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. +..+++|
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            9999999999999999655666789999999999999999 8999999999999999999999988765 7766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=4.3e-20  Score=145.48  Aligned_cols=138  Identities=19%  Similarity=0.138  Sum_probs=112.0

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888899888888666667888888899999888888655667888888889998888888666677888888888888


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++|.+++..+..+..+++|++|++++|.+++ .+|..++.+++|++|++++|++++.++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            8888886555567888888888888888875 357888888888888888888887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=1.4e-19  Score=152.01  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=111.6

Q ss_pred             CCCc--cceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729           59 PICT--WIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR  127 (218)
Q Consensus        59 ~~c~--w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  127 (218)
                      +.|.  |..+.|...         .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus        50 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           50 CSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            4453  456777532         35789999999999988888899999999999999999977778888999999999


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCC-------------------------CCCcEEecccCccc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL-------------------------SKLEVFNAMYNVID  182 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-------------------------~~L~~L~L~~N~l~  182 (218)
                      +++|++++..+..+..+++|++|++++|.+++..+..+.++                         ++|+.|++++|+++
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            99999985445568888999999999998874433344444                         44555555555554


Q ss_pred             ccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          183 GNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       183 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                       .+| .+..+++|++|++++|.+++.+|. |..+++
T Consensus       210 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  243 (452)
T 3zyi_A          210 -DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS  243 (452)
T ss_dssp             -SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred             -ccc-cccccccccEEECcCCcCcccCcccccCccC
Confidence             233 355555666666666666665443 444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=5.6e-20  Score=159.46  Aligned_cols=145  Identities=17%  Similarity=0.031  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ...+++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            35799999999999988888999999999999999999988888999999999999999999977788999999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLR  216 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~  216 (218)
                      +++|.+++..|..+.++++|++|++++|.+++..++.+..+++|++|++++|.+++.+|. ++.++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence            999999965577788999999999999999863334455589999999999999887664 44444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.82  E-value=6.4e-20  Score=134.15  Aligned_cols=137  Identities=17%  Similarity=0.143  Sum_probs=121.7

Q ss_pred             CCcEEEEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            468999999999998 78888889999999999999999854  678899999999999999997688888889999999


Q ss_pred             EccCCcccCCCC--ccccCCCCCcEEecccCcccccCCc----cCCCCCCCCEEEccCCcCcccCCCC
Q 045729          151 RLYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPS----RIGNFSSPFILNLGYNNLQGLLTIF  212 (218)
Q Consensus       151 ~l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~  212 (218)
                      ++++|.+++ +|  ..+..+++|+.|++++|.+++ +|.    .+..+++|++|++++|.+...+.+.
T Consensus       101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A          101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            999999994 44  778899999999999999994 554    7889999999999999988776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=4.9e-19  Score=140.67  Aligned_cols=142  Identities=24%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+..+++|++|++++|.+++ ++.. ..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            456677777777766556666777777777777777763 3322 56667777777777776 66666666777777777


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.++. +..+++
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence            77777644445566677777777777777644444556677777777777777766554 444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=1.9e-19  Score=150.98  Aligned_cols=140  Identities=19%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            57999999999999888999999999999999999999877888999999999999999999777888999999999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIF  212 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  212 (218)
                      ++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            999999777889999999999999999999655556789999999999999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=2.2e-19  Score=143.35  Aligned_cols=143  Identities=18%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             CcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc-cCchhhcCCCCCCEE
Q 045729           73 QRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTL  150 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L  150 (218)
                      ++++.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            455555555555553332 345566666666666666665555556666666666666666654 355566666666666


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL  215 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l  215 (218)
                      ++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.+|. +..+
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            6666666655566666666677777777766644444566666777777777776665553 4444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.81  E-value=5.3e-19  Score=130.36  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             CCCCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccC
Q 045729           58 YPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI  137 (218)
Q Consensus        58 ~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  137 (218)
                      .+.|.|.++.|.            +++++ .+|..+  .+++++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus         4 ~C~C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (177)
T 2o6r_A            4 RCSCSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP   68 (177)
T ss_dssp             TCEEETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCEeCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence            456778777764            33444 345433  368899999999998555556788899999999999998544


Q ss_pred             chhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       138 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            4557888999999999999986555567888999999999999985444456788999999999999887655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=1.9e-20  Score=163.70  Aligned_cols=145  Identities=23%  Similarity=0.359  Sum_probs=125.2

Q ss_pred             CCCcEEEEEcCCCCCccc-----------------CCcCCC--CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc
Q 045729           71 RHQRVTALNLSDIGLGGT-----------------IPPHLG--NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN  131 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  131 (218)
                      ..+++++|++++|.+++.                 +|+.+.  ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            367899999999999985                 999998  9999999999999999999999999999999999999


Q ss_pred             c-ccc-cCchhhcCC------CCCCEEEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCccCCCCCCCCEEEcc
Q 045729          132 K-LSG-SIPTWIGVL------SKLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLG  201 (218)
Q Consensus       132 ~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  201 (218)
                      + ++| .+|..++.+      ++|++|++++|.++ .+|.  .+.++++|+.|++++|.++|.+| .++.+++|++|+++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            8 988 788888776      89999999999998 8888  88899999999999999988888 77777777888887


Q ss_pred             CCcCcccCCCCCCCCC
Q 045729          202 YNNLQGLLTIFGRLRL  217 (218)
Q Consensus       202 ~N~l~~~~p~~~~l~~  217 (218)
                      +|.++..++.++++++
T Consensus       362 ~N~l~~lp~~l~~l~~  377 (636)
T 4eco_A          362 YNQITEIPANFCGFTE  377 (636)
T ss_dssp             SSEEEECCTTSEEECT
T ss_pred             CCccccccHhhhhhcc
Confidence            7777755545555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=2.4e-19  Score=138.32  Aligned_cols=156  Identities=15%  Similarity=0.167  Sum_probs=115.0

Q ss_pred             CCCCCCCCcc-ce--eeeCC------CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCCcccCCCCCC
Q 045729           54 WSISYPICTW-IG--ISCGS------RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLPNELGQLRRL  123 (218)
Q Consensus        54 w~~~~~~c~w-~g--v~c~~------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L  123 (218)
                      |++..+.|.+ ..  |.|..      -..+++.|++++|++++..+..+.++++|++|++++|. ++...+..|.++++|
T Consensus         3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L   82 (239)
T 2xwt_C            3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV   82 (239)
T ss_dssp             CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred             CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence            5555556654 44  44743      23578899999999986666688889999999999997 875445578889999


Q ss_pred             cEEEccC-ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCc---EEecccC-cccccCCccCCCCCCCC-E
Q 045729          124 RFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE---VFNAMYN-VIDGNIPSRIGNFSSPF-I  197 (218)
Q Consensus       124 ~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~  197 (218)
                      ++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+   .|++++| .+++..+..+..+++|+ +
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~  160 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT  160 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence            9999998 88884444677888899999999888884 665 66667776   7777777 77644445577777777 7


Q ss_pred             EEccCCcCcccCCC
Q 045729          198 LNLGYNNLQGLLTI  211 (218)
Q Consensus       198 L~L~~N~l~~~~p~  211 (218)
                      |++++|.++..++.
T Consensus       161 L~l~~n~l~~i~~~  174 (239)
T 2xwt_C          161 LKLYNNGFTSVQGY  174 (239)
T ss_dssp             EECCSCCCCEECTT
T ss_pred             EEcCCCCCcccCHh
Confidence            77777777754443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.8e-19  Score=156.47  Aligned_cols=137  Identities=14%  Similarity=0.103  Sum_probs=109.1

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      .+++.++++++.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            46678888888877544445677888889999888888666668888888999999888888666667788888999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      ++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++..
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            888888433344578888889999888888777777888888888888888888753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=1.4e-18  Score=140.41  Aligned_cols=149  Identities=19%  Similarity=0.231  Sum_probs=117.2

Q ss_pred             CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      ++..+.|.|..+.|...         .++++.|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++
T Consensus        27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            34446688999998631         357999999999999777788999999999999999999777888999999999


Q ss_pred             EEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCccc--ccCCccCCCCCCCCEEEccCC
Q 045729          126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID--GNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       126 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      |++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.++  +..|..+..+ +|++|++++|
T Consensus       107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            999999998 7777654  78999999999998555556788899999999998885  2455555554 4444444444


Q ss_pred             cCcc
Q 045729          204 NLQG  207 (218)
Q Consensus       204 ~l~~  207 (218)
                      .+++
T Consensus       183 ~l~~  186 (332)
T 2ft3_A          183 KLTG  186 (332)
T ss_dssp             BCSS
T ss_pred             CCCc
Confidence            4443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=153.30  Aligned_cols=144  Identities=19%  Similarity=0.135  Sum_probs=119.4

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            35788999999999877777888999999999999998866667788899999999999998866667888999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL  215 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l  215 (218)
                      +++|.+++..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|.+++.++. ++.+
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  172 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence            99998885444468888999999999998885 4688888999999999999988877654 4433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.80  E-value=1.6e-18  Score=129.84  Aligned_cols=127  Identities=23%  Similarity=0.265  Sum_probs=108.9

Q ss_pred             EEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCc
Q 045729           77 ALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS  156 (218)
Q Consensus        77 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  156 (218)
                      .+++++++++ .+|..+.  +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4667777777 6676553  68999999999998 888889999999999999999996666789999999999999999


Q ss_pred             ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          157 FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       157 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            997777788999999999999999995444568899999999999998753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=5.3e-20  Score=162.92  Aligned_cols=177  Identities=19%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             ChHHHHHHHHHHHhccCCCCccCCCCCC-CCCCCccceeeeCCCCCcE------------------EEEEcCCCCCcc--
Q 045729           29 LTADQSALLAFKARVVDYRSVLTNNWSI-SYPICTWIGISCGSRHQRV------------------TALNLSDIGLGG--   87 (218)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~l------------------~~l~l~~~~l~~--   87 (218)
                      .+.+..++.+++.+.....+.....|.. ....+.|.++.+..  +++                  ..++|+.+.+.+  
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~  207 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDD  207 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCcc
Confidence            3567788888887775433333333633 33556777765542  223                  333444444332  


Q ss_pred             -------cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCC
Q 045729           88 -------TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP  160 (218)
Q Consensus        88 -------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  160 (218)
                             ..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence                   23566788999999999999998 88888889999999999999999 99999999999999999999999 8


Q ss_pred             CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          161 IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       161 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      +|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|++++.+|.
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            8999999999999999999998 8899999999999999999999987664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.6e-18  Score=129.01  Aligned_cols=140  Identities=20%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      +.++.++++++ .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46888998887 566554  468999999999999555556889999999999999999544456789999999999999


Q ss_pred             cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. ++.+++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            99965555678999999999999999965566689999999999999999988776 6766654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=5e-19  Score=150.95  Aligned_cols=145  Identities=23%  Similarity=0.257  Sum_probs=124.0

Q ss_pred             CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchh-hcCCCCC
Q 045729           71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKL  147 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L  147 (218)
                      ..++++.|++++|.+++..|..+.++++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            45789999999999998889999999999999999999985  55677889999999999999999657764 7788999


Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       148 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      ++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++..++. +..+++|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  470 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL  470 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcc
Confidence            9999999999877776554  78999999999998 8888888999999999999999977665 6666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=1.1e-18  Score=140.82  Aligned_cols=147  Identities=17%  Similarity=0.192  Sum_probs=102.2

Q ss_pred             CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729           57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR  127 (218)
Q Consensus        57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  127 (218)
                      ..+.|.|..+.|...         .+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|+
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            346688999988631         35789999999999977777899999999999999999977788899999999999


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc--cCCccCCCCCCCCEEEccCCcC
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG--NIPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      +++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|+.|++++|.++.  ..+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            9999887 6665443  566666666666654444445555555555555555532  3344444444444444444444


Q ss_pred             c
Q 045729          206 Q  206 (218)
Q Consensus       206 ~  206 (218)
                      +
T Consensus       184 ~  184 (330)
T 1xku_A          184 T  184 (330)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=3.4e-19  Score=133.69  Aligned_cols=128  Identities=16%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      +++.+++++|.++ .+| .+..+++|++|++++|.++  .++.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4455555555554 333 3445555555555555443  22244455555555555555554444445555555555555


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCc-ccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            555554444445555555555555554 32 333 34455555555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=2.7e-19  Score=160.97  Aligned_cols=150  Identities=18%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             CCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccC-CcccCCCCCCcEEEccCccccccCc
Q 045729           60 ICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-PNELGQLRRLRFIRFGFNKLSGSIP  138 (218)
Q Consensus        60 ~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p  138 (218)
                      .|.|..|.+  ..+++++|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            456777766  3688999999999999888899999999999999999666566 6779999999999999999997778


Q ss_pred             hhhcCCCCCCEEEccCCcccCCCCcc--ccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCcccCCC
Q 045729          139 TWIGVLSKLQTLRLYNNSFTGPIPNS--LFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      ..|..+++|++|++++|.+++.+|..  +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+.
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            99999999999999999999766665  8899999999999999986554 5789999999999999998876554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=3e-19  Score=154.87  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             CcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccccc-CchhhcCCCCCCEE
Q 045729           73 QRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQTL  150 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L  150 (218)
                      ++++.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            334444444444443333 3444455555555555555544444555555555555555555542 44455555555555


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGR  214 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  214 (218)
                      ++++|.+++..|..+..+++|+.|++++|++++..|..++.+++|++|++++|+++..++.+..
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~  542 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH  542 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence            5555555544455555555555555555555554455555555555555555555544444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=144.55  Aligned_cols=143  Identities=22%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|+++...+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56788888888888777778888888888888888888655667888888888888888887443446777888888888


Q ss_pred             cCCcccCCCCcccc-------------------------CCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          153 YNNSFTGPIPNSLF-------------------------NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       153 ~~n~l~~~~p~~l~-------------------------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ++|.+++..+..+.                         ++++|+.|++++|+++ .+| .+..+++|++|++++|++++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            88877643333333                         4555555555555555 344 35566667777777777766


Q ss_pred             cCCC-CCCCCC
Q 045729          208 LLTI-FGRLRL  217 (218)
Q Consensus       208 ~~p~-~~~l~~  217 (218)
                      .+|. |.++++
T Consensus       222 ~~~~~~~~l~~  232 (440)
T 3zyj_A          222 IRPGSFQGLMH  232 (440)
T ss_dssp             ECTTTTTTCTT
T ss_pred             cChhhhccCcc
Confidence            6554 555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=3.6e-19  Score=146.76  Aligned_cols=135  Identities=15%  Similarity=0.159  Sum_probs=106.2

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      .+++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            56788888888877433334677888888888888888655667888888888888888888666667788888888888


Q ss_pred             cCCcccCCCCcc-ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729          153 YNNSFTGPIPNS-LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       153 ~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      ++|.++ .+|.. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            888888 45544 57788888888888888866666788888888888888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1.1e-18  Score=150.23  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=122.6

Q ss_pred             CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCch-hhcCCCCC
Q 045729           71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKL  147 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L  147 (218)
                      ..++++.|++++|.+++..|..+.++++|++|++++|.+++  .+|..+..+++|++|++++|++++.+|. .+..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            46789999999999998889999999999999999999984  2345688999999999999999965765 47788999


Q ss_pred             CEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       148 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      ++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. +..+++|
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  499 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL  499 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence            9999999999876666543  68999999999998 7888888999999999999999987776 7766654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=147.48  Aligned_cols=147  Identities=17%  Similarity=0.155  Sum_probs=123.2

Q ss_pred             CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      ..++++.|++++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            35789999999999998888889999999999999999984444457889999999999999987777888899999999


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.++. +..+++
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  201 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR  201 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence            9999999877777888899999999999998854445678888899999988888887664 555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.78  E-value=3e-19  Score=128.02  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=112.1

Q ss_pred             CCcEEEEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367899999999998 78898889999999999999999854  678899999999999999996688888889999999


Q ss_pred             EccCCcccCC-CCccccCCCCCcEEecccCcccccCC---ccCCCCCCCCEEEccC
Q 045729          151 RLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIP---SRIGNFSSPFILNLGY  202 (218)
Q Consensus       151 ~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~  202 (218)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..++.+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999852 34778899999999999999985444   3688899999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.78  E-value=1.1e-18  Score=153.26  Aligned_cols=137  Identities=22%  Similarity=0.231  Sum_probs=112.8

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch-hhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~  151 (218)
                      +++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|. .|..+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence            57888999999888666667888888999999988888777777888888999999888888 4554 688888888888


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      +++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+++.++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            88888886556778888888888888888887777778888888888888888777655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=1.1e-18  Score=137.39  Aligned_cols=147  Identities=21%  Similarity=0.158  Sum_probs=85.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            35566666666666654455566666666666666666644445566666666666666666533333455666666666


Q ss_pred             ccCCcccCC-CCccccCCCCCcEEecccCcccccCCcc---------------------------CCCCCCCCEEEccCC
Q 045729          152 LYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIPSR---------------------------IGNFSSPFILNLGYN  203 (218)
Q Consensus       152 l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~---------------------------~~~l~~L~~L~L~~N  203 (218)
                      +++|.+++. +|..+..+++|+.|++++|++++..+..                           .....+|++|++++|
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n  210 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN  210 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence            666666532 4555566666666666666555332222                           222336777777777


Q ss_pred             cCcccCCC-CCCCCCC
Q 045729          204 NLQGLLTI-FGRLRLL  218 (218)
Q Consensus       204 ~l~~~~p~-~~~l~~L  218 (218)
                      .+++.++. +..+++|
T Consensus       211 ~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          211 QLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             CCSCCCTTTTTTCCSC
T ss_pred             ceeecCHhHhcccccc
Confidence            77776665 4555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=3e-19  Score=160.30  Aligned_cols=144  Identities=19%  Similarity=0.252  Sum_probs=124.7

Q ss_pred             CCCcEEEEEcCCCCCcc-----------------cCCcCCC--CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc
Q 045729           71 RHQRVTALNLSDIGLGG-----------------TIPPHLG--NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN  131 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  131 (218)
                      ..++++.|++++|.+++                 .+|+.+.  ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            36789999999999998                 3899888  9999999999999999999999999999999999999


Q ss_pred             c-ccc-cCchhhcCCC-------CCCEEEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729          132 K-LSG-SIPTWIGVLS-------KLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL  200 (218)
Q Consensus       132 ~-l~~-~~p~~~~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  200 (218)
                      + ++| .+|..++.++       +|++|++++|.++ .+|.  .+.++++|+.|++++|.++ .+| .++.+++|++|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence            8 887 7887776655       8999999999998 8888  8889999999999999988 788 8888888888888


Q ss_pred             cCCcCcccCCCCCCCCC
Q 045729          201 GYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       201 ~~N~l~~~~p~~~~l~~  217 (218)
                      ++|.++..++.+.++++
T Consensus       603 s~N~l~~lp~~l~~l~~  619 (876)
T 4ecn_A          603 DYNQIEEIPEDFCAFTD  619 (876)
T ss_dssp             CSSCCSCCCTTSCEECT
T ss_pred             cCCccccchHHHhhccc
Confidence            88888855545666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2.9e-18  Score=148.69  Aligned_cols=146  Identities=20%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      .++++.|++++|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..+++|++|
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            456666677776666666666666677777777777766544433 6666777777777777765556666667777777


Q ss_pred             EccCCcccCC---CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          151 RLYNNSFTGP---IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       151 ~l~~n~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++++|.+++.   .+..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++.+|. +.+++.
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  525 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG  525 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence            7777776642   224466667777777777777766666777777777777777777766554 555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=4.1e-18  Score=142.67  Aligned_cols=144  Identities=24%  Similarity=0.241  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCC-------------------------CCcEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLR-------------------------RLRFI  126 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~-------------------------~L~~L  126 (218)
                      .++++.|++++|.++...+..+..+++|++|++++|.++...+..|..++                         +|++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            56788888888888855555677888888888888877743333444444                         45555


Q ss_pred             EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      ++++|.++ .+|. +..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus       191 ~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          191 NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             ECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            55555554 3432 445556666666666666555666667777777777777777666666777777777777777777


Q ss_pred             ccCCC-CCCCCC
Q 045729          207 GLLTI-FGRLRL  217 (218)
Q Consensus       207 ~~~p~-~~~l~~  217 (218)
                      +.++. +..+++
T Consensus       269 ~~~~~~~~~l~~  280 (440)
T 3zyj_A          269 LLPHDLFTPLHH  280 (440)
T ss_dssp             CCCTTTTSSCTT
T ss_pred             ccChhHhccccC
Confidence            76655 455544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=8.5e-19  Score=140.57  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=98.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--CCccc--CCCCCCcEEEccCccccc--cCc-hhhcCCC
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--LPNEL--GQLRRLRFIRFGFNKLSG--SIP-TWIGVLS  145 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~  145 (218)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+.+.  ++..+  ..+++|++|++++|++++  .++ ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            5677777777777766667777777788888877776543  23333  667778888888877762  122 2334667


Q ss_pred             CCCEEEccCCcccCCCC-ccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          146 KLQTLRLYNNSFTGPIP-NSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       146 ~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      +|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |.+..+++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~  297 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQ  297 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCE
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCC
Confidence            88888888888876554 34456778888888888887 7777666  7788888888888876 44666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=6.2e-18  Score=142.06  Aligned_cols=144  Identities=24%  Similarity=0.256  Sum_probs=102.0

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-------------------------CCCCCcEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-------------------------QLRRLRFI  126 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-------------------------~l~~L~~L  126 (218)
                      .++++.|++++|.+++..+..+..+++|++|++++|.++...+..|.                         ++++|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            56888899999988865556678888888888888888743333344                         45555555


Q ss_pred             EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      ++++|.++ .+| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|++|++++|+++
T Consensus       202 ~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          202 NLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            55555555 333 2556667777777777777666777777788888888888887666777788888888888888888


Q ss_pred             ccCCC-CCCCCC
Q 045729          207 GLLTI-FGRLRL  217 (218)
Q Consensus       207 ~~~p~-~~~l~~  217 (218)
                      +.++. +..+++
T Consensus       280 ~~~~~~~~~l~~  291 (452)
T 3zyi_A          280 SLPHDLFTPLRY  291 (452)
T ss_dssp             CCCTTSSTTCTT
T ss_pred             ccChHHhccccC
Confidence            77665 555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=2.8e-19  Score=143.34  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=82.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCC-----CCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccccc--Cchhh--c
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNL-----TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS--IPTWI--G  142 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~  142 (218)
                      .++++.|++++|.+++. |..+..+     ++|++|++++|.+++..|..+..+++|++|++++|++.+.  +|..+  .
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            35566666666666544 4444444     5666666666666644445666666666666666665543  23333  5


Q ss_pred             CCCCCCEEEccCCcccC--CCC-ccccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCcccCCCC
Q 045729          143 VLSKLQTLRLYNNSFTG--PIP-NSLFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQGLLTIF  212 (218)
Q Consensus       143 ~l~~L~~L~l~~n~l~~--~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~  212 (218)
                      .+++|++|++++|.+++  .++ ..+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++..++.+
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence            66666666666666652  112 122356677777777777775554 34455677777777777777544433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=147.93  Aligned_cols=144  Identities=23%  Similarity=0.296  Sum_probs=92.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ++++.|++++|.+.+. ++.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       373 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          373 TSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             SCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            4555555555555532 2225566666666666666664444 3456667777777777776656666666677777777


Q ss_pred             ccCCccc-CCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          152 LYNNSFT-GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       152 l~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      +++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.+|. +.++++
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  519 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS  519 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence            7777765 45666666777777777777777766666677777777777777777766654 555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.6e-18  Score=128.89  Aligned_cols=130  Identities=20%  Similarity=0.249  Sum_probs=113.4

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.++  .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            578999999999765  345788999999999999999977888899999999999999999977888999999999999


Q ss_pred             ccCCc-ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          152 LYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       152 l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++|. ++ .+| .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++.+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccCC
Confidence            99998 66 666 6889999999999999998 455 78899999999999999865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=3.9e-18  Score=147.97  Aligned_cols=138  Identities=21%  Similarity=0.183  Sum_probs=114.5

Q ss_pred             EEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcc
Q 045729           78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF  157 (218)
Q Consensus        78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  157 (218)
                      .+-++.+++ .+|+.+.  +++++|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            455556666 6777654  5799999999999966667899999999999999999955566799999999999999999


Q ss_pred             cCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc-CCC-CCCCCCC
Q 045729          158 TGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL-LTI-FGRLRLL  218 (218)
Q Consensus       158 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~-~~~l~~L  218 (218)
                      ++..+..|.++++|++|++++|++++..+..++++++|++|++++|.+++. +|. ++.+++|
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence            965556789999999999999999965566799999999999999999864 343 5555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.4e-17  Score=144.43  Aligned_cols=85  Identities=20%  Similarity=0.242  Sum_probs=39.2

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ++++.|++++|.+++..|..+.++++|++|++++|.++ .+|. .|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            34444444444444433444444445555555555444 2222 234445555555555554443344444444444444


Q ss_pred             ccCCccc
Q 045729          152 LYNNSFT  158 (218)
Q Consensus       152 l~~n~l~  158 (218)
                      +++|.++
T Consensus       178 L~~N~l~  184 (597)
T 3oja_B          178 LSSNRLT  184 (597)
T ss_dssp             CTTSCCS
T ss_pred             CcCCCCC
Confidence            4444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.76  E-value=5e-18  Score=136.92  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729          121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL  200 (218)
Q Consensus       121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  200 (218)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence            34444444444444333445555566666666666665444445555666666666666665 55656666666666666


Q ss_pred             cCCcCcccCC
Q 045729          201 GYNNLQGLLT  210 (218)
Q Consensus       201 ~~N~l~~~~p  210 (218)
                      ++|++++.++
T Consensus       271 ~~N~i~~~~~  280 (330)
T 1xku_A          271 HNNNISAIGS  280 (330)
T ss_dssp             CSSCCCCCCT
T ss_pred             CCCcCCccCh
Confidence            6666665544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=1.8e-17  Score=136.59  Aligned_cols=40  Identities=18%  Similarity=0.134  Sum_probs=17.0

Q ss_pred             CCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729          169 SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       169 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      ++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  287 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence            3344444444444433344444444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=136.43  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--C--CcccCCCCCCcEEEccCccccccCch----hhcC
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--L--PNELGQLRRLRFIRFGFNKLSGSIPT----WIGV  143 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~  143 (218)
                      .++++.|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|+++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            56899999999999877778889999999999999987642  2  223467889999999999997 4444    2567


Q ss_pred             CCCCCEEEccCCcccCCCCccccCC---CCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          144 LSKLQTLRLYNNSFTGPIPNSLFNL---SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       144 l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |.+..+++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~  295 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE  295 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence            8999999999999997778777766   69999999999999 7888775  7999999999999985 33444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.6e-17  Score=135.83  Aligned_cols=133  Identities=20%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  154 (218)
                      +.+++++++++ .+|..+.  ..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            37899999998 5777654  5689999999999966666677 899999999999999966667899999999999999


Q ss_pred             CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      |.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            999966666788999999999999999977788999999999999999999987665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=5.1e-18  Score=130.89  Aligned_cols=142  Identities=23%  Similarity=0.280  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCC-CcccCCcCCCCCCCCCEEEccC-CcccccCCcccCCCCCCcEEEccCccccccCch-----------
Q 045729           73 QRVTALNLSDIG-LGGTIPPHLGNLTFLVSLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-----------  139 (218)
Q Consensus        73 ~~l~~l~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-----------  139 (218)
                      ++++.|++++|. ++...+..+.++++|++|++++ |.+++..+..|..+++|++|++++|.++ .+|.           
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFF  133 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-ccccccccccccccc
Confidence            445555555554 4433333445555555555554 5554333334445555555555555444 2333           


Q ss_pred             ----------------hhcCCCCCC-EEEccCCcccCCCCccccCCCCCcEEecccCc-ccccCCccCCCC-CCCCEEEc
Q 045729          140 ----------------WIGVLSKLQ-TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNF-SSPFILNL  200 (218)
Q Consensus       140 ----------------~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L  200 (218)
                                      .+..+++|+ ++++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|++|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence                            344555555 5555555555 344333323555666666663 553334455566 66666666


Q ss_pred             cCCcCcccCCC-CCCCC
Q 045729          201 GYNNLQGLLTI-FGRLR  216 (218)
Q Consensus       201 ~~N~l~~~~p~-~~~l~  216 (218)
                      ++|++++.++. +.+++
T Consensus       213 ~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          213 SQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             TTCCCCCCCCTTCTTCS
T ss_pred             CCCccccCChhHhccCc
Confidence            66666655544 44444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=5.2e-18  Score=144.65  Aligned_cols=137  Identities=20%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      +++++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            67888999999888666677888889999999999988766778888899999999999888 67766  7888999999


Q ss_pred             cCCcccC-CCCccccCCCCCcEEecccCcccccCCccCCCCCCC--CEEEccCCcC--cccCCC-CCCC
Q 045729          153 YNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP--FILNLGYNNL--QGLLTI-FGRL  215 (218)
Q Consensus       153 ~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~-~~~l  215 (218)
                      ++|.+++ .+|..+.++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|. ++.+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccc
Confidence            9998886 467888888999999999988875   356667777  8999999888  555554 5554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.8e-18  Score=146.76  Aligned_cols=130  Identities=16%  Similarity=0.085  Sum_probs=66.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ++++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence            4455555555555544444455555555555555555544444443 455555555555555522 22 22355555555


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +++|.+++ +|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|++.
T Consensus       198 Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            55555552 3333555555555555555555 24545555555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=2.6e-17  Score=128.91  Aligned_cols=127  Identities=24%  Similarity=0.229  Sum_probs=89.7

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++. ++ +..+++|++|++++|.++ .+|.. .. ++|++|++++|+++ .++ .+..+++|++|+
T Consensus        62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILS  134 (263)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccC-CCh-hhcCcccccEEE
Confidence            46777778887777743 33 777777888888887777 34432 22 77788888888777 343 477777888888


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      +++|++++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++..+
T Consensus       135 Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          135 IRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            88887773 43 567777888888888887744  56777778888888888776553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=3.8e-17  Score=130.81  Aligned_cols=133  Identities=23%  Similarity=0.359  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++ + +.+..+++|++|++++|.++ .++. +..+++|++|++++|.++ .++. +..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l  158 (308)
T 1h6u_A           85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSI  158 (308)
T ss_dssp             CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEc
Confidence            445555555555543 2 23455555555555555555 2332 555555555555555555 2332 555566666666


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      ++|.++ .++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|++++.++ +..++
T Consensus       159 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~  217 (308)
T 1h6u_A          159 GNAQVS-DLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP-LANTS  217 (308)
T ss_dssp             CSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred             cCCcCC-CChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence            666665 2333 5566666666666666652 332 5566666666666666665543 44443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.4e-18  Score=141.50  Aligned_cols=137  Identities=23%  Similarity=0.238  Sum_probs=119.1

Q ss_pred             CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCch--hhcCCCCC
Q 045729           71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKL  147 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L  147 (218)
                      ..++++.|++++|.+++..+..+.++++|++|++++|.++ .+|.. +.++++|++|++++|+++ .+|.  .+..+++|
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L  151 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL  151 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence            4688999999999999877888999999999999999999 55554 889999999999999999 6665  78899999


Q ss_pred             CEEEccCCc-ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          148 QTLRLYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       148 ~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      ++|++++|. +.+..+..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+...+
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence            999999994 66555678889999999999999999888889998888888888888776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=8.5e-18  Score=122.78  Aligned_cols=121  Identities=19%  Similarity=0.183  Sum_probs=106.8

Q ss_pred             CCCCCCEEEccCCccc-ccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729           95 NLTFLVSLDVAHNNFR-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV  173 (218)
Q Consensus        95 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  173 (218)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4478999999999998 7889888999999999999999984 4 77889999999999999999768887778999999


Q ss_pred             EecccCcccccCC--ccCCCCCCCCEEEccCCcCcccCC----CCCCCCCC
Q 045729          174 FNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGLLT----IFGRLRLL  218 (218)
Q Consensus       174 L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p----~~~~l~~L  218 (218)
                      |++++|.+++ +|  ..+..+++|++|++++|++++.++    .+..+++|
T Consensus       100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A          100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            9999999984 44  688999999999999999999887    46666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=1.3e-17  Score=134.65  Aligned_cols=88  Identities=20%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             CcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccC
Q 045729          123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGY  202 (218)
Q Consensus       123 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  202 (218)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus       195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence            333444444444333344555566666666666666544455666666666666666666 5666666666666666666


Q ss_pred             CcCcccCCC
Q 045729          203 NNLQGLLTI  211 (218)
Q Consensus       203 N~l~~~~p~  211 (218)
                      |++++.++.
T Consensus       274 N~l~~~~~~  282 (332)
T 2ft3_A          274 NNITKVGVN  282 (332)
T ss_dssp             SCCCBCCTT
T ss_pred             CCCCccChh
Confidence            666665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=3.2e-17  Score=130.20  Aligned_cols=136  Identities=29%  Similarity=0.343  Sum_probs=107.1

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++.. + +..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+ ..+..+++|++|+
T Consensus        67 l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~-~~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY  140 (291)
T ss_dssp             CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCC-CC-hhhcCCCCCCEEE
Confidence            478889999999988543 3 888899999999999887 344 4888889999999999888 44 4577888899999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++ + ..+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +.+..+++|
T Consensus       141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L  202 (291)
T 1h6t_A          141 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNL  202 (291)
T ss_dssp             CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTC
T ss_pred             ccCCcCCc-c-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCCC-hhhccCCCC
Confidence            99998884 3 567788889999999998884 443 88888899999999888874 446655543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=2.4e-17  Score=142.00  Aligned_cols=123  Identities=19%  Similarity=0.198  Sum_probs=105.1

Q ss_pred             CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc--cCchhhcCCCCCCEEEccCCcccCCCCcc-ccCCCC
Q 045729           94 GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LFNLSK  170 (218)
Q Consensus        94 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~  170 (218)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            678899999999999998888899999999999999999985  33456889999999999999999756654 678899


Q ss_pred             CcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      |+.|++++|.+++.+|..+.  ++|++|++++|+++..++.+..+++|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L  475 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQAL  475 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCC
Confidence            99999999999887776654  78999999999999877766666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=3.2e-17  Score=131.25  Aligned_cols=135  Identities=21%  Similarity=0.337  Sum_probs=113.9

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++ +++ +..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++. +..+++|++|+
T Consensus        62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLY  135 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEE
Confidence            5789999999999985 444 889999999999999998 444 6889999999999999998 4554 88999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      +++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++.++ +..+++
T Consensus       136 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~  196 (308)
T 1h6u_A          136 LDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASLPN  196 (308)
T ss_dssp             CCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred             CCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCC
Confidence            99999984 444 8889999999999999984 554 8899999999999999988654 444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=2.6e-18  Score=138.01  Aligned_cols=129  Identities=16%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      +++.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++ .++. ...+++|++|++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEEC
Confidence            344444444444433333444444455555555544433333332 3444555555555444 2222 123445555555


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      ++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       199 s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            555554 23333444555555555555554 34444445555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=4.3e-18  Score=121.97  Aligned_cols=121  Identities=18%  Similarity=0.141  Sum_probs=105.6

Q ss_pred             CCCCCCEEEccCCccc-ccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729           95 NLTFLVSLDVAHNNFR-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV  173 (218)
Q Consensus        95 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  173 (218)
                      ..++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 78998889999999999999999844  77889999999999999999768888888999999


Q ss_pred             EecccCccccc-CCccCCCCCCCCEEEccCCcCcccCC----CCCCCCC
Q 045729          174 FNAMYNVIDGN-IPSRIGNFSSPFILNLGYNNLQGLLT----IFGRLRL  217 (218)
Q Consensus       174 L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~l~~  217 (218)
                      |++++|.+++. .+..++.+++|++|++++|++++.++    .++.+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  141 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ  141 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence            99999999852 34789999999999999999999877    3554444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=8.4e-18  Score=142.63  Aligned_cols=139  Identities=12%  Similarity=0.068  Sum_probs=109.9

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc-CCCCCCEEEc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLRL  152 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l  152 (218)
                      +++.|++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            344444445554433332   357889999999999877777888899999999999999977777776 7899999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      ++|.+++. |. ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++.++.++.++.|
T Consensus       177 s~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             TTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             CCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence            99999854 33 4468999999999999995 5667889999999999999999977777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=3.9e-17  Score=122.21  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=110.1

Q ss_pred             CCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEE
Q 045729           56 ISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFI  126 (218)
Q Consensus        56 ~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  126 (218)
                      +..+.|.|..+.|...         .++++.|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|
T Consensus         5 P~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A            5 PTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence            4456678888888631         357999999999998 788899999999999999999997666789999999999


Q ss_pred             EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc
Q 045729          127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG  183 (218)
Q Consensus       127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~  183 (218)
                      ++++|++++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999996666789999999999999999995555568899999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=6.9e-17  Score=120.69  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=102.4

Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEeccc
Q 045729          100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY  178 (218)
Q Consensus       100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  178 (218)
                      +++++++|+++ .+|..+..  ++++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999997 88876643  899999999999854443 488999999999999999988899999999999999999


Q ss_pred             CcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          179 NVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       179 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      |++++..+..+..+++|++|++++|++++.+|. ++.+++|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence            999987788899999999999999999998775 7777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=1e-16  Score=140.77  Aligned_cols=144  Identities=25%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCcccccc----------------
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGS----------------  136 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~----------------  136 (218)
                      .++.+++++|.+++..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|++.+.                
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            56667777777776667777777777777777777766555 4566677777777777765533                


Q ss_pred             ----------CchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccC----C----ccCCCCCCCCEE
Q 045729          137 ----------IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI----P----SRIGNFSSPFIL  198 (218)
Q Consensus       137 ----------~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~----p----~~~~~l~~L~~L  198 (218)
                                +|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..    |    ..+..+++|++|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence                      3445555566666666666666444444566666666666666665321    1    125566666666


Q ss_pred             EccCCcCcccCCC-CCCCCC
Q 045729          199 NLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       199 ~L~~N~l~~~~p~-~~~l~~  217 (218)
                      ++++|.++..++. |+.+++
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTT
T ss_pred             ECCCCCCCCCCHHHcccccC
Confidence            6666666655543 555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2e-17  Score=132.87  Aligned_cols=140  Identities=12%  Similarity=0.084  Sum_probs=109.2

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhh-cCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~  151 (218)
                      ++++.|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            3455555555555543332   35788999999999986666678889999999999999986666665 4789999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++ ++. ...+++|+.|++++|.++ .+|..+..+++|++|++++|++++.++.+..+++|
T Consensus       176 L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          176 LQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (317)
T ss_dssp             CTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             CCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence            99999984 333 345899999999999998 56667899999999999999999877777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=6.1e-17  Score=138.77  Aligned_cols=138  Identities=20%  Similarity=0.179  Sum_probs=120.1

Q ss_pred             EEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcc
Q 045729           78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF  157 (218)
Q Consensus        78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  157 (218)
                      .+.++++++ .+|+.+.  +++++|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            789999998 7787664  8999999999999977788899999999999999999977778899999999999999999


Q ss_pred             cCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcC-cccCC-CCCCCCCC
Q 045729          158 TGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNL-QGLLT-IFGRLRLL  218 (218)
Q Consensus       158 ~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l-~~~~p-~~~~l~~L  218 (218)
                      ++..|..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+ ...++ .++++++|
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            97666679999999999999999985 3577899999999999999984 44443 37777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=1e-16  Score=127.31  Aligned_cols=136  Identities=21%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.+++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++ .+|. +..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEE
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEE
Confidence            4678999999999884 44 4888999999999999998 4554 899999999999999998 4554 89999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++ + ..+..+++|+.|++++|.+++ + ..++.+++|++|++++|.+++.++ +..+++|
T Consensus       119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L  180 (291)
T 1h6t_A          119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL  180 (291)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence            99999984 4 568899999999999999984 4 578999999999999999998766 6666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=7.9e-17  Score=139.78  Aligned_cols=135  Identities=29%  Similarity=0.347  Sum_probs=89.5

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+.+..+  +..+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+ ..+..+++|+.|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~  137 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY  137 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEE
T ss_pred             CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEEE
Confidence            4677777777777774333  667777777777777776 333 5667777777777777776 33 3466777777777


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      +++|.+++ + ..+..+++|+.|++++|.+++..|  +..+++|+.|+|++|.+++. |.+..+++
T Consensus       138 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~  198 (605)
T 1m9s_A          138 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKN  198 (605)
T ss_dssp             CCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTT
T ss_pred             CCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCC
Confidence            77777763 3 456667777777777777764333  66677777777777776664 44554444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=7.1e-18  Score=135.04  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             cEEEEEcCCCCCcccCCcCC--CCCCCCCEEEccCCcccccCC----cccCCCCCCcEEEccCccccccCchhhcCCCCC
Q 045729           74 RVTALNLSDIGLGGTIPPHL--GNLTFLVSLDVAHNNFRGHLP----NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL  147 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  147 (218)
                      +++.|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            36666666666666555555  555555555555555553332    122334555555555555543333444455555


Q ss_pred             CEEEccCCcccC---------------------------CCCc----cccCCCCCcEEecccCcccccCCccCCCC---C
Q 045729          148 QTLRLYNNSFTG---------------------------PIPN----SLFNLSKLEVFNAMYNVIDGNIPSRIGNF---S  193 (218)
Q Consensus       148 ~~L~l~~n~l~~---------------------------~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~  193 (218)
                      ++|++++|++.+                           .++.    .+..+++|++|++++|.+++..|+.+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            555555554321                           2222    12455677777777777776556666655   5


Q ss_pred             CCCEEEccCCcCcccCCC
Q 045729          194 SPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       194 ~L~~L~L~~N~l~~~~p~  211 (218)
                      +|++|++++|+++..++.
T Consensus       252 ~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             TCCCEECCSSCCCSCCSC
T ss_pred             cCCEEECCCCCCCchhhh
Confidence            777777777777755443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.71  E-value=2.6e-17  Score=121.20  Aligned_cols=129  Identities=23%  Similarity=0.271  Sum_probs=110.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCC-CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc-hhhcCCCCCCE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQT  149 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~  149 (218)
                      ..+++.|++++|.++ .++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.++ .+| ..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            467999999999998 4554 55554 999999999999954  57889999999999999999 455 44589999999


Q ss_pred             EEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCcc----CCCCCCCCEEEccCCcCcc
Q 045729          150 LRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSR----IGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       150 L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~  207 (218)
                      |++++|.++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|++|++++|....
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999997 6776  7889999999999999998 67764    8899999999999997653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=143.35  Aligned_cols=139  Identities=19%  Similarity=0.197  Sum_probs=121.7

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccC-chhhcCCCCCCEEEccC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQTLRLYN  154 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~  154 (218)
                      ...+.++++++ .+|.   -.+++++|++++|.+++..|..|.++++|++|++++|...+.+ |..|..+++|++|++++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            45677788888 6676   3479999999999999888889999999999999999666566 67899999999999999


Q ss_pred             CcccCCCCccccCCCCCcEEecccCcccccCCcc--CCCCCCCCEEEccCCcCcccCC--CCCCCCCC
Q 045729          155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR--IGNFSSPFILNLGYNNLQGLLT--IFGRLRLL  218 (218)
Q Consensus       155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p--~~~~l~~L  218 (218)
                      |.+++..|..+.++++|++|++++|.+++.+|..  ++++++|++|++++|.+++..+  .|+++++|
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            9999888999999999999999999999777765  8999999999999999998765  37777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=1.1e-16  Score=129.74  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=97.8

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.+++++|.+.+..+  +..+++|++|++++|.++ .++. +..+++|++|++++|.++ .+ +.+..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNV  272 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEEC
T ss_pred             CccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEc
Confidence            445555555555543222  566777888888888777 3444 777888888888888877 34 35777888888888


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      ++|.+++ + +.+..+++|+.|++++|.+++..|..++.+++|++|++++|++++.+| +..+++
T Consensus       273 ~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~  334 (347)
T 4fmz_A          273 GSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSK  334 (347)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTT
T ss_pred             cCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhc
Confidence            8888874 3 357778888888888888887777778888888999999888888766 444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2.5e-18  Score=152.19  Aligned_cols=137  Identities=25%  Similarity=0.342  Sum_probs=116.2

Q ss_pred             CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      ....++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|++|++++|.++ .+|..++.+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            3578999999999998 78888889999999999999999 89999999999999999999999 899999999999999


Q ss_pred             EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCC-CCEEEccCCcCcccCCC
Q 045729          151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS-PFILNLGYNNLQGLLTI  211 (218)
Q Consensus       151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~  211 (218)
                      ++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus       299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            99999998 88999999999999999999999877766543211 12244555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=1.5e-16  Score=137.02  Aligned_cols=133  Identities=24%  Similarity=0.324  Sum_probs=83.9

Q ss_pred             CCCCCCCC-----cccee-eeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729           54 WSISYPIC-----TWIGI-SCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR  127 (218)
Q Consensus        54 w~~~~~~c-----~w~gv-~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  127 (218)
                      |.....+|     .|.++ .|..  .+++.|++++|++++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|+
T Consensus        36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            65555667     68888 6753  467888888888875 666553  67777777777777 566   3456777777


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|++++
T Consensus       107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            77777763 565 443  66666666666663 444   34556666666666553 443   34455555555555555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=4.1e-16  Score=114.30  Aligned_cols=106  Identities=21%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      +.+++++|+++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            35677778877 5776653  78899999999998666777888999999999999998544455678889999999999


Q ss_pred             cccCCCCccccCCCCCcEEecccCccccc
Q 045729          156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGN  184 (218)
Q Consensus       156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  184 (218)
                      ++++..+..+..+++|+.|++++|.++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            98855555678888899999999988744

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.68  E-value=3.7e-16  Score=131.70  Aligned_cols=133  Identities=26%  Similarity=0.369  Sum_probs=78.1

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..+++|++|++
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L  316 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEEC
Confidence            455666666666553322  5556666666666666652 332 5566666666666666663 322 556666666666


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      ++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+| +..++
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~  375 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLT  375 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCC
Confidence            6666664333  45566666666666666532  356666666666666666666555 44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=2.8e-16  Score=115.63  Aligned_cols=105  Identities=24%  Similarity=0.241  Sum_probs=84.3

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN  155 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  155 (218)
                      +.++++++++. .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46888888886 6777664  88999999999998766778888999999999999998433344678889999999999


Q ss_pred             cccCCCCccccCCCCCcEEecccCcccc
Q 045729          156 SFTGPIPNSLFNLSKLEVFNAMYNVIDG  183 (218)
Q Consensus       156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~  183 (218)
                      .+++..+..+..+++|+.|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9884444457888899999999998873

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.6e-16  Score=121.83  Aligned_cols=135  Identities=24%  Similarity=0.293  Sum_probs=115.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|+++ .++ .+..+++|++|++++|.++ .++. +..+++|++|++++|+++ .+|... . ++|++|+
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEE
T ss_pred             cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEE
Confidence            468999999999998 455 6889999999999999998 5555 899999999999999998 566533 3 8999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++ ++ .+..+++|+.|++++|++++ ++ .++.+++|++|++++|++++. +.+..+++|
T Consensus       113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L  174 (263)
T 1xeu_A          113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV  174 (263)
T ss_dssp             CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred             ccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence            99999994 44 58899999999999999984 55 788999999999999999987 667666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.2e-16  Score=135.16  Aligned_cols=111  Identities=22%  Similarity=0.260  Sum_probs=100.6

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729           98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM  177 (218)
Q Consensus        98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  177 (218)
                      .|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            5788999999998 5776 899999999999999999 899999999999999999999994 77 78999999999999


Q ss_pred             cCcccccC-CccCCCCCCCCEEEccCCcCcccCCCCC
Q 045729          178 YNVIDGNI-PSRIGNFSSPFILNLGYNNLQGLLTIFG  213 (218)
Q Consensus       178 ~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~  213 (218)
                      +|.+++.. |..++.+++|+.|++++|++++.+|...
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            99999765 8999999999999999999999887643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=4e-16  Score=134.50  Aligned_cols=121  Identities=26%  Similarity=0.285  Sum_probs=108.2

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECC
Confidence            47889999999995 676 999999999999999999 89999999999999999999999 578 79999999999999


Q ss_pred             CCcccCCC-CccccCCCCCcEEecccCcccccCCccC----CCCCCCCEEEc
Q 045729          154 NNSFTGPI-PNSLFNLSKLEVFNAMYNVIDGNIPSRI----GNFSSPFILNL  200 (218)
Q Consensus       154 ~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L  200 (218)
                      +|.+++.. |..+..+++|+.|++++|.+++..| ..    ..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence            99999765 9999999999999999999996544 33    34789998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=7.1e-16  Score=113.50  Aligned_cols=115  Identities=21%  Similarity=0.189  Sum_probs=98.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            36899999999999966666788999999999999999955555678999999999999999955555678999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP  186 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  186 (218)
                      +++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999995444456789999999999999986554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=8.8e-20  Score=137.05  Aligned_cols=111  Identities=22%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            4445555555555555555 244 4445555555555555555 445444444555555555555552 33 34445555


Q ss_pred             cEEecccCcccccCC--ccCCCCCCCCEEEccCCcCccc
Q 045729          172 EVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      ++|++++|.+++ ++  ..+..+++|++|++++|++.+.
T Consensus       118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          118 RVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence            555555555542 22  2344555555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=7.3e-16  Score=133.75  Aligned_cols=136  Identities=21%  Similarity=0.301  Sum_probs=117.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..+++.|++++|.+.. ++ .+..+++|+.|++++|.+++ +++ +..+++|+.|++++|.++ .+| .+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence            4678899999999874 44 58899999999999999984 454 889999999999999998 455 688999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++ + ..+..+++|+.|++++|.+++ + ..+..+++|+.|+|++|.+.+.+| +..+++|
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L  177 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL  177 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCC
Confidence            99999994 4 458899999999999999985 4 678999999999999999998877 6666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=5.9e-16  Score=125.40  Aligned_cols=127  Identities=23%  Similarity=0.340  Sum_probs=110.2

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++. ++ +..+++|++|++++|.+++ + +.+..+++|++|++++|.++ .+ +.+..+++|++|+
T Consensus       220 ~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~  293 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLF  293 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEE
T ss_pred             CCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEE
Confidence            57899999999999854 33 8899999999999999984 4 46889999999999999998 45 4588999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +++|.+++..|..+..+++|+.|++++|.+++..|  +..+++|++|++++|+++
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999998788889999999999999999995444  888999999999999886

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=2.4e-16  Score=116.04  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=96.4

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCC-CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQL-RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK  170 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  170 (218)
                      .+....+|++|++++|.++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3567789999999999998 5665 4444 499999999999994 4 67889999999999999999543344588999


Q ss_pred             CcEEecccCcccccCCc--cCCCCCCCCEEEccCCcCcccCC
Q 045729          171 LEVFNAMYNVIDGNIPS--RIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       171 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      |++|++++|.++ .+|.  .++.+++|++|++++|+++..++
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            999999999997 6776  78899999999999999987655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=2.4e-15  Score=110.18  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729          100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN  179 (218)
Q Consensus       100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N  179 (218)
                      +++++++|.++ .+|..+.  +++++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            45666666665 4554432  55666666666666444555666666666666666666433334455666666666666


Q ss_pred             cccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729          180 VIDGNIPSRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       180 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      ++++..+..+..+++|++|++++|+++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            666433334556666666666666655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.63  E-value=3.6e-16  Score=136.00  Aligned_cols=94  Identities=27%  Similarity=0.435  Sum_probs=53.9

Q ss_pred             CCCCCCCCccceeee------CCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729           54 WSISYPICTWIGISC------GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR  127 (218)
Q Consensus        54 w~~~~~~c~w~gv~c------~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  127 (218)
                      |....++|.|.|..+      .....+++.+++++|+++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+
T Consensus        15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~   87 (622)
T 3g06_A           15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE   87 (622)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred             HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence            665667777755321      111234666677766666 5555443  56666666666666 4554   345666666


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCccc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT  158 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  158 (218)
                      +++|+++ .+|.   .+++|++|++++|.++
T Consensus        88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           88 VSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             ECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             cCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            6666665 4554   4455566666655555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.63  E-value=1.7e-15  Score=127.67  Aligned_cols=134  Identities=25%  Similarity=0.350  Sum_probs=80.7

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++.  +.+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus       221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L  294 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLEL  294 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEc
Confidence            4455555555555431  2345566666666666666532 22 5566666666666666663 333 566667777777


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      ++|.+++ ++. +..+++|+.|++++|.+++..|  +..+++|++|++++|++++. +.++.+++
T Consensus       295 ~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~  354 (466)
T 1o6v_A          295 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTN  354 (466)
T ss_dssp             CSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTT
T ss_pred             CCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCC
Confidence            7776663 222 5666777777777777764433  56677777777777777764 44555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=3.4e-15  Score=128.52  Aligned_cols=124  Identities=24%  Similarity=0.355  Sum_probs=56.9

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  167 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSV  167 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEEC
Confidence            445555555555553 443 332  45555555555542 443   3445555555555554 2443   3345555555


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCC-------CEEEccCCcCcccCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP-------FILNLGYNNLQGLLTIFGRLR  216 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~l~  216 (218)
                      ++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++.+++.+.+++
T Consensus       168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~  230 (571)
T 3cvr_A          168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD  230 (571)
T ss_dssp             CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred             CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence            5555542 444 32  45555555555554 4444 322  34       555555555554333333333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=5.6e-15  Score=124.35  Aligned_cols=130  Identities=18%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++. |  +..+++|++|++++|.+++ ++  +..+++|++|++++|++++ +|  ++.+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence            46777777777777753 3  6777777888888777774 33  6677778888888887773 44  67777788888


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      +++|.+++ ++  +..+++|+.|++++|...+.+  .++.+++|++|++++|.+++.+  ++.+++
T Consensus       134 l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~  192 (457)
T 3bz5_A          134 CARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKL  192 (457)
T ss_dssp             CTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred             CCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCC
Confidence            88887774 33  667778888888888655455  4777888888888888888743  444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=6.4e-15  Score=123.99  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++. +  +.++++|++|++++|.+++ +|  +..+++|++|++++|++++ ++  ++.+++|++|+
T Consensus        84 l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~  154 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELD  154 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEE
Confidence            46677777777777753 3  6677777777777777773 44  6677777777777777774 33  66777777777


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      +++|...+.+  .+..+++|+.|++++|++++ +|  ++.+++|+.|++++|.+++.
T Consensus       155 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             CTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            7777544444  35667777777777777774 44  66777777777777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.61  E-value=6.2e-15  Score=108.40  Aligned_cols=108  Identities=15%  Similarity=0.111  Sum_probs=81.8

Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729          100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN  179 (218)
Q Consensus       100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N  179 (218)
                      +.+++++|.++ .+|..+.  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888886 7776654  77888888888888666777888888888888888888543444577888888888888


Q ss_pred             cccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          180 VIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       180 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++++..+..+..+++|++|++++|++....+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            8884434457788888888888888776544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=2.1e-17  Score=133.25  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=39.4

Q ss_pred             CcEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc-cccc-cCchhhcCCCCCCE
Q 045729           73 QRVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN-KLSG-SIPTWIGVLSKLQT  149 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~  149 (218)
                      ++++.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4455555555554433 4444444555555555555554444444444555555555555 3432 13333444444444


Q ss_pred             EEccCC
Q 045729          150 LRLYNN  155 (218)
Q Consensus       150 L~l~~n  155 (218)
                      |++++|
T Consensus       173 L~l~~~  178 (336)
T 2ast_B          173 LNLSWC  178 (336)
T ss_dssp             EECCCC
T ss_pred             EcCCCC
Confidence            444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.61  E-value=1e-14  Score=122.64  Aligned_cols=124  Identities=28%  Similarity=0.388  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      +++++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+   ++|++|++++|+++ .+| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEEC
Confidence            456666666666664 55 4666666777777666666 344322   35666666666666 345 3666666666666


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT  210 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  210 (218)
                      ++|.+++ +|...   ++|+.|++++|.++ .+| .++.+++|++|++++|++++.++
T Consensus       203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred             CCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc
Confidence            6666663 33321   35666666666665 555 36666777777777776666443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=4.1e-15  Score=120.96  Aligned_cols=158  Identities=18%  Similarity=0.054  Sum_probs=107.3

Q ss_pred             CCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcE-EE
Q 045729           59 PICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRF-IR  127 (218)
Q Consensus        59 ~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L~  127 (218)
                      +.|.|..|.|...         .++++.|++++|+++...+..|.++++|++|++++|.+.+.+|. .|.++++++. +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            5588999999631         25789999999999954455789999999999999998756664 5788888765 56


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC--------------------------CcEEecccCcc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK--------------------------LEVFNAMYNVI  181 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~--------------------------L~~L~L~~N~l  181 (218)
                      +..|+++...|..|..+++|++|++++|.+++..+..+....+                          ++.|++++|++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            6778998555678899999999999999887433333323233                          44555555555


Q ss_pred             cccCCccCCCCCCCCEEEccC-CcCcccCCC-CCCCCC
Q 045729          182 DGNIPSRIGNFSSPFILNLGY-NNLQGLLTI-FGRLRL  217 (218)
Q Consensus       182 ~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~-~~~l~~  217 (218)
                      + .+|.......+|+.+++++ |.++.+++. |..+++
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence            5 3444444444555565553 344443333 444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.3e-16  Score=128.63  Aligned_cols=133  Identities=15%  Similarity=0.189  Sum_probs=110.2

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCC-ccccc-CCcccCCCCCCcEEEccCc-ccccc-CchhhcCCC-C
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN-NFRGH-LPNELGQLRRLRFIRFGFN-KLSGS-IPTWIGVLS-K  146 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~  146 (218)
                      .+++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            578999999999998888888888999999999999 67642 5666778899999999999 88753 567788888 9


Q ss_pred             CCEEEccCC--ccc-CCCCccccCCCCCcEEecccCc-ccccCCccCCCCCCCCEEEccCCc
Q 045729          147 LQTLRLYNN--SFT-GPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       147 L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      |++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            999999999  444 3456667788999999999998 676677788888999999999985

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=6e-14  Score=117.96  Aligned_cols=108  Identities=28%  Similarity=0.331  Sum_probs=64.6

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEec
Q 045729           97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNA  176 (218)
Q Consensus        97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  176 (218)
                      ++|++|++++|.++ .+| .+.++++|++|++++|+++ .+|..   .++|++|++++|.+++ +| .+.++++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            45666666666666 355 4666666666666666666 34442   2366666666666663 44 4666667777777


Q ss_pred             ccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729          177 MYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL  217 (218)
Q Consensus       177 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~  217 (218)
                      ++|.+++ +|...   ++|++|++++|.++. +|.++.+++
T Consensus       203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~~-lp~~~~l~~  238 (454)
T 1jl5_A          203 DNNSLKK-LPDLP---LSLESIVAGNNILEE-LPELQNLPF  238 (454)
T ss_dssp             CSSCCSS-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTT
T ss_pred             CCCcCCc-CCCCc---CcccEEECcCCcCCc-ccccCCCCC
Confidence            7776663 44322   466777777777663 445555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=5.3e-16  Score=127.65  Aligned_cols=137  Identities=15%  Similarity=0.215  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCCc-ccCC---cCCCCCCCCCEEEccCCcccc-----cCCcccCCCCCCcEEEccCcccc----ccCch
Q 045729           73 QRVTALNLSDIGLG-GTIP---PHLGNLTFLVSLDVAHNNFRG-----HLPNELGQLRRLRFIRFGFNKLS----GSIPT  139 (218)
Q Consensus        73 ~~l~~l~l~~~~l~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~  139 (218)
                      ++++.|++++|.++ +.++   ..+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            46777777777765 2333   345566778888888887762     23335667778888888888874    45677


Q ss_pred             hhcCCCCCCEEEccCCcccCC----CCcccc--CCCCCcEEecccCcccc----cCCccC-CCCCCCCEEEccCCcCccc
Q 045729          140 WIGVLSKLQTLRLYNNSFTGP----IPNSLF--NLSKLEVFNAMYNVIDG----NIPSRI-GNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       140 ~~~~l~~L~~L~l~~n~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~  208 (218)
                      .+..+++|++|++++|.+++.    +|..+.  .+++|+.|++++|.+++    .+|..+ .++++|++|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            777788888888888877643    455553  37788888888888875    366666 5578888888888887765


Q ss_pred             C
Q 045729          209 L  209 (218)
Q Consensus       209 ~  209 (218)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.53  E-value=1.2e-13  Score=120.21  Aligned_cols=73  Identities=26%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      +++.|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|+.|++++|+++ .+|..   +++|++|+++
T Consensus        82 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls  149 (622)
T 3g06_A           82 ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVS  149 (622)
T ss_dssp             TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECc
Confidence            3444444444443 2332   3344444444444444 2332   2344445555555444 33332   2455555555


Q ss_pred             CCccc
Q 045729          154 NNSFT  158 (218)
Q Consensus       154 ~n~l~  158 (218)
                      +|.++
T Consensus       150 ~N~l~  154 (622)
T 3g06_A          150 DNQLA  154 (622)
T ss_dssp             SSCCS
T ss_pred             CCcCC
Confidence            55555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=8.9e-14  Score=112.69  Aligned_cols=109  Identities=18%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             CCccceeeeCCCCCcEEEEEcCCC-CCcccCCcCCCCCCCCCEEEccC-CcccccCCcccCCCCCCcEEEccCccccccC
Q 045729           60 ICTWIGISCGSRHQRVTALNLSDI-GLGGTIPPHLGNLTFLVSLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSI  137 (218)
Q Consensus        60 ~c~w~gv~c~~~~~~l~~l~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  137 (218)
                      .|.|..+.|            +++ +++ .+|. +..+++|++|++++ |.+++..+..|.++++|++|+|++|++++..
T Consensus         7 ~C~~~~v~~------------~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   72 (347)
T 2ifg_A            7 PHGSSGLRC------------TRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA   72 (347)
T ss_dssp             CSSSSCEEC------------CSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred             cccCCEEEc------------CCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence            477766655            444 566 5788 89999999999996 9999666678999999999999999999777


Q ss_pred             chhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc
Q 045729          138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG  183 (218)
Q Consensus       138 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~  183 (218)
                      |..|..+++|++|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus        73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77889999999999999999944333444444 9999999998873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=9.6e-16  Score=126.10  Aligned_cols=135  Identities=19%  Similarity=0.203  Sum_probs=95.5

Q ss_pred             CCcEEEEEcCCCC---CcccCCcCC-------CCCCCCCEEEccCCcccc----cCCcccCCCCCCcEEEccCccccccC
Q 045729           72 HQRVTALNLSDIG---LGGTIPPHL-------GNLTFLVSLDVAHNNFRG----HLPNELGQLRRLRFIRFGFNKLSGSI  137 (218)
Q Consensus        72 ~~~l~~l~l~~~~---l~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~  137 (218)
                      .++++.|++++|.   +++.+|..+       ..+++|++|++++|.+++    .+|..+..+++|++|++++|.+++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            4678888888753   444455443       577888888888888875    35666777888888888888876433


Q ss_pred             chhh----cCC---------CCCCEEEccCCccc-CCCC---ccccCCCCCcEEecccCccc--c---cCCccCCCCCCC
Q 045729          138 PTWI----GVL---------SKLQTLRLYNNSFT-GPIP---NSLFNLSKLEVFNAMYNVID--G---NIPSRIGNFSSP  195 (218)
Q Consensus       138 p~~~----~~l---------~~L~~L~l~~n~l~-~~~p---~~l~~l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L  195 (218)
                      +..+    ..+         ++|++|++++|.++ +.+|   ..+..+++|+.|++++|.++  |   ..|..+..+++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence            3333    333         78888888888886 3344   35567788888888888886  2   234477788889


Q ss_pred             CEEEccCCcCc
Q 045729          196 FILNLGYNNLQ  206 (218)
Q Consensus       196 ~~L~L~~N~l~  206 (218)
                      ++|++++|.++
T Consensus       219 ~~L~Ls~n~l~  229 (386)
T 2ca6_A          219 KVLDLQDNTFT  229 (386)
T ss_dssp             CEEECCSSCCH
T ss_pred             cEEECcCCCCC
Confidence            99999998885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=8.8e-14  Score=112.71  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=90.7

Q ss_pred             CEEEccCC-cccccCCcccCCCCCCcEEEccC-ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729          100 VSLDVAHN-NFRGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM  177 (218)
Q Consensus       100 ~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  177 (218)
                      ..++.+++ +++ .+|. +..+++|+.|++++ |++++..+..|..+++|++|++++|++++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45688888 898 7898 99999999999996 99996666789999999999999999998888889999999999999


Q ss_pred             cCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          178 YNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       178 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +|++++..+..+..++ |+.|++++|++..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999954444455554 9999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=7.5e-17  Score=120.96  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=110.2

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+| .+..+++|++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEE
Confidence            4789999999999986 66 8889999999999999998 78887777899999999999999 566 688899999999


Q ss_pred             ccCCcccCCCC--ccccCCCCCcEEecccCcccccCCcc----------CCCCCCCCEEEccCCcCcc
Q 045729          152 LYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPSR----------IGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       152 l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++|.++ .++  ..+..+++|++|++++|.+++..|..          +..+++|+.|+  +|.++.
T Consensus       122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999998 444  36889999999999999998766543          78899999987  666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=2.8e-15  Score=122.39  Aligned_cols=134  Identities=21%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCC-----CCCCEEEccCCcccccCCcc----cCCC-CCCcEEEccCccccccCchhhc-
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNL-----TFLVSLDVAHNNFRGHLPNE----LGQL-RRLRFIRFGFNKLSGSIPTWIG-  142 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p~~~~-  142 (218)
                      +++.|++++|.+++..+..+..+     ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+. 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            68888888888776555555543     77888888888887554443    3333 6788888888888754444332 


Q ss_pred             ---C-CCCCCEEEccCCcccCCCC----ccccCCC-CCcEEecccCcccccCCccC----CCC-CCCCEEEccCCcCcc
Q 045729          143 ---V-LSKLQTLRLYNNSFTGPIP----NSLFNLS-KLEVFNAMYNVIDGNIPSRI----GNF-SSPFILNLGYNNLQG  207 (218)
Q Consensus       143 ---~-l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~  207 (218)
                         . .++|++|++++|.+++..+    ..+...+ +|+.|++++|.+++..+..+    ... ++|++|++++|.++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence               3 3578888888888774332    3334454 78888888888875554333    344 488888888888776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=2.3e-14  Score=117.00  Aligned_cols=139  Identities=21%  Similarity=0.136  Sum_probs=110.3

Q ss_pred             CCcEEEEEcCCCCCcccCC----cCCCCCC-CCCEEEccCCcccccCCcccCCC-----CCCcEEEccCccccccCchhh
Q 045729           72 HQRVTALNLSDIGLGGTIP----PHLGNLT-FLVSLDVAHNNFRGHLPNELGQL-----RRLRFIRFGFNKLSGSIPTWI  141 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~  141 (218)
                      .++++.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4569999999999986655    6677888 89999999999997667666654     899999999999986666544


Q ss_pred             ----cCC-CCCCEEEccCCcccCCCCccc----cC-CCCCcEEecccCcccccC----CccCCCCC-CCCEEEccCCcCc
Q 045729          142 ----GVL-SKLQTLRLYNNSFTGPIPNSL----FN-LSKLEVFNAMYNVIDGNI----PSRIGNFS-SPFILNLGYNNLQ  206 (218)
Q Consensus       142 ----~~l-~~L~~L~l~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~~----p~~~~~l~-~L~~L~L~~N~l~  206 (218)
                          ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..    +..+..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                444 899999999999986555443    33 369999999999998533    33445555 9999999999998


Q ss_pred             ccCC
Q 045729          207 GLLT  210 (218)
Q Consensus       207 ~~~p  210 (218)
                      +..+
T Consensus       181 ~~~~  184 (362)
T 3goz_A          181 SKNC  184 (362)
T ss_dssp             GSCH
T ss_pred             hhhH
Confidence            7654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.42  E-value=3.5e-13  Score=109.50  Aligned_cols=144  Identities=20%  Similarity=0.221  Sum_probs=105.4

Q ss_pred             CCcEEEEEcCCCCCcccCCc-CCCCCCCCCE-EEccCCcccccCCcccCCCCCCcEEEccCccccccCch----------
Q 045729           72 HQRVTALNLSDIGLGGTIPP-HLGNLTFLVS-LDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT----------  139 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~-~l~~l~~L~~-L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~----------  139 (218)
                      .++++.|++++|.+.+.+|. .|.+++++++ +.+..|+++...|..|..+++|++|++++|++++..+.          
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence            57889999999988666654 5677777665 55566888755566788888888888888877632211          


Q ss_pred             ---------------hhcCC-CCCCEEEccCCcccCCCCccccCCCCCcEEeccc-CcccccCCc-cCCCCCCCCEEEcc
Q 045729          140 ---------------WIGVL-SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY-NVIDGNIPS-RIGNFSSPFILNLG  201 (218)
Q Consensus       140 ---------------~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~-~~~~l~~L~~L~L~  201 (218)
                                     .+..+ ..+++|++++|.++ .+|.......+|+.+++++ |.++ .+|. .|..+++|++|+++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs  210 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDIS  210 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECT
T ss_pred             hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcC
Confidence                           11222 35778889999888 5666666677899999985 5565 6765 57899999999999


Q ss_pred             CCcCcccCCC-CCCCCC
Q 045729          202 YNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       202 ~N~l~~~~p~-~~~l~~  217 (218)
                      +|+++..++. +.++++
T Consensus       211 ~N~l~~lp~~~~~~L~~  227 (350)
T 4ay9_X          211 RTRIHSLPSYGLENLKK  227 (350)
T ss_dssp             TSCCCCCCSSSCTTCCE
T ss_pred             CCCcCccChhhhccchH
Confidence            9999988775 666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.40  E-value=5.7e-15  Score=123.85  Aligned_cols=135  Identities=17%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             CcEEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCcccccCCcccC-----CCCCCcEEEccCcccccc----Cch
Q 045729           73 QRVTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRGHLPNELG-----QLRRLRFIRFGFNKLSGS----IPT  139 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~  139 (218)
                      ++++.|++++|.++..    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            4566666666666542    344455566666666666666533222222     224677777777776643    345


Q ss_pred             hhcCCCCCCEEEccCCcccCCCCccccC-----CCCCcEEecccCcccc----cCCccCCCCCCCCEEEccCCcCcc
Q 045729          140 WIGVLSKLQTLRLYNNSFTGPIPNSLFN-----LSKLEVFNAMYNVIDG----NIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       140 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      .+..+++|++|++++|.+++..+..+..     .++|+.|++++|.+++    .+|..+..+++|++|++++|++++
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            5566778888888888776443333321     5688888888888875    567777778888888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.33  E-value=1.5e-14  Score=121.26  Aligned_cols=112  Identities=16%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCccccccCchhhcC-----CCCCCEEEccCCcccCC----CC
Q 045729           96 LTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-----LSKLQTLRLYNNSFTGP----IP  162 (218)
Q Consensus        96 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~----~p  162 (218)
                      +++|++|++++|.++..    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            44455555555544421    3333444455555555555544322222211     13555555555555432    23


Q ss_pred             ccccCCCCCcEEecccCcccccCCccCCC-----CCCCCEEEccCCcCcc
Q 045729          163 NSLFNLSKLEVFNAMYNVIDGNIPSRIGN-----FSSPFILNLGYNNLQG  207 (218)
Q Consensus       163 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~  207 (218)
                      ..+..+++|+.|++++|.+++..+..+..     .++|++|++++|.+++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            34445566777777777665433332221     4567777777776663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=3.8e-13  Score=110.24  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             CcEEEEEcCCCCCcccCCcCC-CCCCCCCEEEccCCcccccCCccc-----CCCCCCcEEEccCccccc----cCchhhc
Q 045729           73 QRVTALNLSDIGLGGTIPPHL-GNLTFLVSLDVAHNNFRGHLPNEL-----GQLRRLRFIRFGFNKLSG----SIPTWIG  142 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~----~~p~~~~  142 (218)
                      .+++.|++++|.++......+ ..+++|++|++++|.++......+     ...++|++|++++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            689999999999875433222 235689999999999974333333     246789999999999874    2444557


Q ss_pred             CCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCcc
Q 045729          143 VLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       143 ~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ..++|++|++++|.+++.    ++..+...++|+.|++++|.++..    ++..+...++|++|++++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            789999999999998742    345567778999999999999742    33445567899999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=1.3e-10  Score=93.56  Aligned_cols=96  Identities=11%  Similarity=0.010  Sum_probs=78.7

Q ss_pred             CCCCcEEEccCccccccCc-hhhcCCCCCCEEEccCCcccCCCCccccCCCCCc-EEecccCcccccCCccCCCCCCCCE
Q 045729          120 LRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE-VFNAMYNVIDGNIPSRIGNFSSPFI  197 (218)
Q Consensus       120 l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~  197 (218)
                      +++|+.+++++|.++ .+| ..|..+++|+.+++.+| ++..-+..|.++.+|+ .+++.+ .++..-+..|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            678999999999888 555 47888999999999988 6645566788999999 999988 676455678999999999


Q ss_pred             EEccCCcCcccCCC-CCCCCCC
Q 045729          198 LNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       198 L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      +++++|.++.+.+. |.++++|
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCC
T ss_pred             EEeCCCccCccchhhhcCCcch
Confidence            99999999988775 7777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=2.5e-10  Score=91.82  Aligned_cols=73  Identities=14%  Similarity=-0.010  Sum_probs=55.5

Q ss_pred             CCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCC-EEEccCCcCcccCCC-CCCCCCC
Q 045729          144 LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPF-ILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       144 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      +++|+.+++++|.++..-+..|.++.+|+.+++.+| ++..-+..|.++.+|+ .+++.+ .++.+.+. |.++++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            678999999998888444556788889999999888 6644456788899998 999988 66665544 7666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=1.2e-12  Score=107.26  Aligned_cols=135  Identities=17%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             CcEEEEEcCCCCCcccCCcCC----C-CCCCCCEEEccCCcccccCCccc-CCCCCCcEEEccCccccccCchhh-----
Q 045729           73 QRVTALNLSDIGLGGTIPPHL----G-NLTFLVSLDVAHNNFRGHLPNEL-GQLRRLRFIRFGFNKLSGSIPTWI-----  141 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~-----  141 (218)
                      +.++.+++++|.++......+    . ..++|++|++++|.++......+ ..+++|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999875433222    2 23689999999999974332222 245689999999999974433333     


Q ss_pred             cCCCCCCEEEccCCcccC----CCCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCcc
Q 045729          142 GVLSKLQTLRLYNNSFTG----PIPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       142 ~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ...++|++|++++|.++.    .++..+...++|++|++++|.++..    ++..+...++|++|++++|.++.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            246889999999999874    2444557789999999999998742    34566777899999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.02  E-value=6.5e-12  Score=108.35  Aligned_cols=136  Identities=12%  Similarity=0.063  Sum_probs=86.8

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCcEEEccCcc--ccccCchh
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGN-LTFLVSLDVA----HNNFRGH-----LPNELGQLRRLRFIRFGFNK--LSGSIPTW  140 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~p~~  140 (218)
                      ++++.|+++.+.+++..+..+.. +++|++|+++    .|.+++.     ++..+.++++|++|+++++.  +++..+..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            45555666555555444433433 6667777775    4555532     22224457778888876432  44443443


Q ss_pred             hc-CCCCCCEEEccCCcccC-CCCccccCCCCCcEEecccCccccc-CCccCCCCCCCCEEEccCCcCccc
Q 045729          141 IG-VLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGN-IPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       141 ~~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      +. .+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            43 47888999998888874 2344456788999999999987644 333445788999999999987754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.02  E-value=3.4e-11  Score=103.90  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             CCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccc----ccCchhhcCCCCCCEEEccCCcccCCCCcc--
Q 045729           95 NLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLS----GSIPTWIGVLSKLQTLRLYNNSFTGPIPNS--  164 (218)
Q Consensus        95 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--  164 (218)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.++    +.++..+..+++|++|++++|.+.+ +|..  
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            445555555555555432    1112233455555555555554    1222333444555555555554442 2333  


Q ss_pred             -------------------------ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          165 -------------------------LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       165 -------------------------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                                               +..+++|+.++++++.. +.+|..+..+++|++|++++|.++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCC
Confidence                                     33334444444444322 244555556667777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.98  E-value=1.1e-11  Score=96.64  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CCCCCcEEEccCccccc--cCchhhcCCCCCCEEEccCCcccCCCCccccCCC--CCcEEecccCcccccCCc-------
Q 045729          119 QLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS--KLEVFNAMYNVIDGNIPS-------  187 (218)
Q Consensus       119 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~-------  187 (218)
                      ++++|+.|++++|++++  .+|..+..+++|+.|++++|.+++.  ..+..+.  +|+.|++++|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45667777777777764  3345555667777777777777632  2233233  677777777777655552       


Q ss_pred             cCCCCCCCCEEE
Q 045729          188 RIGNFSSPFILN  199 (218)
Q Consensus       188 ~~~~l~~L~~L~  199 (218)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245566666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=2.6e-10  Score=84.36  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             CCCCCCCCCEEEccCC-ccccc----CCcccCCCCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC--
Q 045729           92 HLGNLTFLVSLDVAHN-NFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP--  160 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~--  160 (218)
                      .+...+.|++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.++..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566777777776 66421    233444556777777777776532    223344556777777777777632  


Q ss_pred             --CCccccCCCCCcEEec--ccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729          161 --IPNSLFNLSKLEVFNA--MYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       161 --~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                        +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3445556677788888  67777632    2334445577888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.79  E-value=6.4e-11  Score=102.11  Aligned_cols=129  Identities=9%  Similarity=0.118  Sum_probs=69.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCC-ccccc-CCcccCCCCCCcEEEccCccccccCchhhc----CCC
Q 045729           73 QRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHN-NFRGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIG----VLS  145 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~  145 (218)
                      ++++.|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            4566777777666654444443 4667777777766 34321 223333566777777777766543333232    455


Q ss_pred             CCCEEEccCCc--ccCC-CCccccCCCCCcEEecccC-cccccCCccCCCCCCCCEEEccC
Q 045729          146 KLQTLRLYNNS--FTGP-IPNSLFNLSKLEVFNAMYN-VIDGNIPSRIGNFSSPFILNLGY  202 (218)
Q Consensus       146 ~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~  202 (218)
                      +|++|++++|.  ++.. ++.-...+++|+.|++++| .+. .+|..+..+++|++|+++.
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSB
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEccccc
Confidence            67777777665  1100 1111234567777777766 233 2455555566666666443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.72  E-value=2.2e-10  Score=98.78  Aligned_cols=131  Identities=8%  Similarity=0.043  Sum_probs=71.6

Q ss_pred             cEEEEEcCCCCCcccCCcCCC-CCCCCCEEEcc--C----CcccccCC------cccCCCCCCcEEEccCccccccCchh
Q 045729           74 RVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVA--H----NNFRGHLP------NELGQLRRLRFIRFGFNKLSGSIPTW  140 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~p------~~~~~l~~L~~L~l~~n~l~~~~p~~  140 (218)
                      +++.|++..+.+++.....+. .+++|+.|+++  +    +.++ ..|      ..+..+++|+.|++++ .+++..+..
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            344444444444433222222 35666666666  2    3333 111      1134456677777755 444333334


Q ss_pred             hcC-CCCCCEEEccCCcccCCCCccc-cCCCCCcEEecccCcccccCCc-cCCCCCCCCEEEccCCcCc
Q 045729          141 IGV-LSKLQTLRLYNNSFTGPIPNSL-FNLSKLEVFNAMYNVIDGNIPS-RIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       141 ~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~  206 (218)
                      +.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            443 6777777777777654333333 4567788888888877533332 3345677888888877763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=7.9e-09  Score=84.21  Aligned_cols=132  Identities=13%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC--CCCCCcEEEccC--cccccc-----Cchhh-
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG--QLRRLRFIRFGF--NKLSGS-----IPTWI-  141 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~-  141 (218)
                      .++++.|+++++.-. .+++ + .+++|+.|++..+.++......+.  .+++|+.|+++.  |...+.     +...+ 
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            356777777665211 2232 2 266777777776665432222222  567777777642  111111     11112 


Q ss_pred             -cCCCCCCEEEccCCcccCCCCccc---cCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729          142 -GVLSKLQTLRLYNNSFTGPIPNSL---FNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       142 -~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                       ..+++|++|++.+|.+.+..+..+   ..+++|++|+++.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             235677777777776653222222   2356777777777777642    3333345677777777777655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.58  E-value=8e-07  Score=73.37  Aligned_cols=56  Identities=7%  Similarity=-0.005  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF  130 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  130 (218)
                      .+++.+++++|.++..-...|. ..+|+.+.+..+ ++..-...|.++++|+.+++..
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            3445555554444421112222 344444444322 3312223444555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.58  E-value=4.4e-08  Score=76.33  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=63.5

Q ss_pred             CCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchhhcCCC--CCCEEEccCCcccCCCCc-------
Q 045729           95 NLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPN-------  163 (218)
Q Consensus        95 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~-------  163 (218)
                      ++++|+.|++++|.+++  .+|..+..+++|+.|++++|++++.  ..+..+.  +|++|++++|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47899999999999996  4456667899999999999999843  3344444  899999999999876663       


Q ss_pred             cccCCCCCcEEe
Q 045729          164 SLFNLSKLEVFN  175 (218)
Q Consensus       164 ~l~~l~~L~~L~  175 (218)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            256789999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=6.9e-09  Score=76.64  Aligned_cols=111  Identities=18%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             CCcEEEEEcCCC-CCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cc
Q 045729           72 HQRVTALNLSDI-GLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IP  138 (218)
Q Consensus        72 ~~~l~~l~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p  138 (218)
                      .+.+++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.+...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            478999999999 88642    344566678999999999999742    233445568899999999999743    34


Q ss_pred             hhhcCCCCCCEEEc--cCCcccCC----CCccccCCCCCcEEecccCccc
Q 045729          139 TWIGVLSKLQTLRL--YNNSFTGP----IPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       139 ~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      ..+...++|++|++  ++|.++..    +...+...++|+.|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56677789999999  88998743    3344556789999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=8.9e-07  Score=73.08  Aligned_cols=115  Identities=10%  Similarity=-0.058  Sum_probs=73.1

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccc-----ccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS-----GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+|+.+.+. +.++..-...|.++++|+.+++.+|.+.     ..-+..|..+++|+.+++.. .++..-...|.++.+|
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            445555552 3344233456777778888887776553     12334677777888888774 3553344567777888


Q ss_pred             cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729          172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL  215 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l  215 (218)
                      +.+++..| ++..-+.+|.++ +|+.+++.+|.+....+. |..+
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            88888554 553445677788 888999888877665544 4444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.40  E-value=1.8e-07  Score=76.21  Aligned_cols=133  Identities=14%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCCCCc---------ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc
Q 045729           72 HQRVTALNLSDIGLG---------GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG  142 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  142 (218)
                      .++++.|.+......         +.+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            367888888665331         123344567899999999987421 3443 3 378999999998887643333444


Q ss_pred             --CCCCCCEEEccC--CcccCC-----CCccc--cCCCCCcEEecccCcccccCCccC---CCCCCCCEEEccCCcCcc
Q 045729          143 --VLSKLQTLRLYN--NSFTGP-----IPNSL--FNLSKLEVFNAMYNVIDGNIPSRI---GNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       143 --~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~  207 (218)
                        .+++|++|+++.  |...+.     +...+  ..+++|++|++.+|.+.+..+..+   ..+++|++|+|+.|.+..
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence              789999999864  221111     11222  247899999999998874333222   357899999999999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1.3e-06  Score=63.59  Aligned_cols=34  Identities=12%  Similarity=0.253  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCC
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN  107 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n  107 (218)
                      .++.||++++.++..--..+..+++|++|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3555555555544332233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=6.7e-07  Score=65.12  Aligned_cols=93  Identities=10%  Similarity=0.041  Sum_probs=61.9

Q ss_pred             cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcc-ccccCchhhcCC----CCCCEEEccCCc-ccCCC
Q 045729           88 TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVL----SKLQTLRLYNNS-FTGPI  161 (218)
Q Consensus        88 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~  161 (218)
                      .+|.....-..|+.|+++++.++..--..+.++++|+.|++++|. ++...-..+..+    ++|++|++++|. ++..-
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            345433333578999999988875444556788899999998885 553322344443    368888888874 66332


Q ss_pred             CccccCCCCCcEEecccCc
Q 045729          162 PNSLFNLSKLEVFNAMYNV  180 (218)
Q Consensus       162 p~~l~~l~~L~~L~L~~N~  180 (218)
                      -..+..+++|+.|+++++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            3345667888888888774

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.53  E-value=0.00072  Score=55.28  Aligned_cols=85  Identities=8%  Similarity=-0.121  Sum_probs=56.6

Q ss_pred             ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCC
Q 045729          116 ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP  195 (218)
Q Consensus       116 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  195 (218)
                      .|..+.+|+.+.+..+ ++..-...|..+++|+.+++..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4556777777777654 44223346777888888888654 44233456777888888888766 553344577888888


Q ss_pred             CEEEccCC
Q 045729          196 FILNLGYN  203 (218)
Q Consensus       196 ~~L~L~~N  203 (218)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            88888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.52  E-value=0.00067  Score=55.48  Aligned_cols=111  Identities=10%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             CcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCC
Q 045729           90 PPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS  169 (218)
Q Consensus        90 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~  169 (218)
                      ...|.+...|+.+.+..+... .-...|.+++.|+.+.+.. .++..-...|..+.+|+.+++..+ ++..-..+|.++.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            345666677777777655443 3344566777777777753 344122345667777777777654 4323345566777


Q ss_pred             CCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729          170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      +|+.+.+..+ ++..-..+|.++.+|+.+++.++.
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            7777777543 442223466777777777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.51  E-value=0.0015  Score=52.89  Aligned_cols=110  Identities=11%  Similarity=0.017  Sum_probs=67.9

Q ss_pred             cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729           91 PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK  170 (218)
Q Consensus        91 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  170 (218)
                      ..+.....|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...|..+++|+.+.+.++.++..-...|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            34555666777776554 33233345666777777777543 33122345677788888888777666334556777788


Q ss_pred             CcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729          171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      |+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            888887654 44233456777777777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.47  E-value=0.0011  Score=54.25  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=74.6

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      .++.+.+..+... .-...+.+...|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|..+++|+.+.+.
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            3444444433221 2334567788888888863 454233456888889999988764 442334578888899999886


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      .+ ++..-..+|.++.+|+.+++.++....   ..+....+|+.+.+..|.+
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            54 553335667888899999888876431   3556667788777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.43  E-value=0.00034  Score=48.21  Aligned_cols=57  Identities=25%  Similarity=0.213  Sum_probs=39.3

Q ss_pred             cEEEccCcccc-ccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCccc
Q 045729          124 RFIRFGFNKLS-GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       124 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      ..++.+++.++ ..+|..+.  +++++|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777775 35565332  46888888888888433445667788888888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.38  E-value=0.0034  Score=51.25  Aligned_cols=120  Identities=14%  Similarity=0.045  Sum_probs=79.8

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+.....++.+.+..+... .....|..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++..-..+|.++.+|
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence            4555666777766665443 33445666777777766655432   235677888999988765 442335567889999


Q ss_pred             cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                      +.+++..+ ++..-..+|.++.+|+.+.+..| ++.+... |.++++|
T Consensus       323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            99999754 65334568889999999999877 5554443 6665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.30  E-value=0.0056  Score=49.53  Aligned_cols=122  Identities=12%  Similarity=0.017  Sum_probs=84.6

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+.....++.+.+..+ +.......|..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +...-...+.++.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            4555677777777654 33234456778889999998765 44233456778889999998654 442334567789999


Q ss_pred             cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729          172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL  217 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~  217 (218)
                      +.+.+.++.++..-...|.++.+|+.+.+..+ ++.+... |.++++
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  334 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA  334 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence            99999998887444568889999999999755 5444332 555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.18  E-value=8e-05  Score=55.12  Aligned_cols=85  Identities=14%  Similarity=0.168  Sum_probs=38.5

Q ss_pred             CCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCc---ccc----c
Q 045729          120 LRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNV---IDG----N  184 (218)
Q Consensus       120 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~---l~~----~  184 (218)
                      -+.|+.|++++|.+...    +.+.+..-+.|++|+++.|.|...    +.+.+..-..|+.|++++|.   +..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            34455555555555421    112223334566666666655421    22233344456666665432   221    1


Q ss_pred             CCccCCCCCCCCEEEccCCc
Q 045729          185 IPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       185 ~p~~~~~l~~L~~L~L~~N~  204 (218)
                      +.+.+..-+.|+.|+++.|.
T Consensus       149 ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCcCeEeccCCC
Confidence            22233334556666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.12  E-value=0.0013  Score=45.24  Aligned_cols=56  Identities=23%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             EEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccc
Q 045729           77 ALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS  134 (218)
Q Consensus        77 ~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  134 (218)
                      .++.++++++ ..+|..+.  .++++|+|++|+++..-+..|..+++|++|++++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666777765 34554432  45778888888887333344667777777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.64  E-value=0.00095  Score=49.33  Aligned_cols=86  Identities=12%  Similarity=0.056  Sum_probs=61.9

Q ss_pred             CCCCCCcEEEccCc-cccc----cCchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----
Q 045729          118 GQLRRLRFIRFGFN-KLSG----SIPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----  184 (218)
Q Consensus       118 ~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----  184 (218)
                      ..-+.|+.|++++| .+..    .+.+.+..-+.|+.|++++|.+...    +.+.+..-..|+.|+|+.|.+...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34467888888875 6642    2334556678999999999999732    334455668999999999999743    


Q ss_pred             CCccCCCCCCCCEEEccCC
Q 045729          185 IPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       185 ~p~~~~~l~~L~~L~L~~N  203 (218)
                      +-+.+..-+.|++|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            3345566678999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 3e-14
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 32  DQSALLAFKARVVDYRSVLTNNWSISYP-ICTWIGISC--GSRHQRVTALNLSDIGLGG- 87
           D+ ALL  K  +    + L++    +     TW+G+ C   ++  RV  L+LS + L   
Sbjct: 7   DKQALLQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 88  -TIPPHLGNLTFLVSLDVAHN-NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS 145
             IP  L NL +L  L +    N  G +P  + +L +L ++      +SG+IP ++  + 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204
            L TL    N+ +G +P S+ +L  L       N I G IP   G+FS  F       N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 4e-09
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 103 DVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT--GP 160
           D+ +N   G LP  L QL+ L  +   FN L G IP   G L +       NN      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

Query: 161 IP 162
           +P
Sbjct: 309 LP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 52  NNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG 111
                         +      + +  L+L +  + GT+P  L  L FL SL+V+ NN  G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 112 HLPNELGQLRRLRFIRFGFNKLSGSIP 138
            +P + G L+R     +  NK     P
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 9e-09
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179
           N++ G++P  +  L  L +L +  N+  G IP    NL + +V     N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205
           L NN   G +P  L  L  L   N  +N + G IP   GN     +     N  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 5e-10
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 50  LTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNF 109
           LTN   +         ++  S   ++T L L    +    P  L  LT L +L++  N  
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 297

Query: 110 RGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS 169
               P     L+ L ++   FN +S   P  +  L+KLQ L   NN  +    +SL NL+
Sbjct: 298 EDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLT 351

Query: 170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN 203
            +   +A +N I    P  + N +    L L   
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 8e-09
 Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 50  LTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNF 109
           LTN  S+         I+       +  L+L+   L       L +LT L  LD+A+N  
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 110 RGHLPNELGQLRRLRFIRFGFNKLSGSIP--------------------TWIGVLSKLQT 149
               P  L  L +L  ++ G N++S   P                    + I  L  L  
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 150 LRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209
           L LY N+ +   P  + +L+KL+      N +     S + N ++   L+ G+N +  L 
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 210 TI 211
            +
Sbjct: 368 PL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 95  NLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153
            L   +   +   N    +   +L Q+  L+  R G   + G     +  L+ L  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 154 NNSFTGPIPNSLFNLSKLEVFNAMYN 179
           NN  T   P  L NL+KL       N
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNN 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 3/143 (2%)

Query: 76  TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG 135
             +  SD+GL   +P  L        LD+ +N        +   L+ L  +    NK+S 
Sbjct: 13  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 136 SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195
             P     L KL+ L L  N            L +L V       +  ++ + +      
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 196 FILNLGYNNLQGLLTIFGRLRLL 218
            +      +       F  ++ L
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKL 152

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 95  NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154
           N   +V L        G        +++L +IR     ++ +IP   G+   L  L L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG 180

Query: 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGR 214
           N  T     SL  L+ L      +N I       + N      L+L  N L  +      
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 215 LRLL 218
            + +
Sbjct: 241 HKYI 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 27/167 (16%), Positives = 45/167 (26%)

Query: 52  NNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG 111
                       +  +      R+  L+L   GL    P     L  L  L +  N  + 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 112 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171
              +    L  L  +    N++S         L  L  L L+ N      P++  +L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
                  N +       +    +   L L  N              L
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 22/167 (13%), Positives = 39/167 (23%), Gaps = 28/167 (16%)

Query: 68  CGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127
           C   ++     +    GL   +P  +   +    + +  N             R L  + 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 128 FGFNK-------------------------LSGSIPTWIGVLSKLQTLRLYNNSFTGPIP 162
              N                          L    P     L +L TL L         P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 163 NSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209
                L+ L+      N +         +  +   L L  N +  + 
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 52  NNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG 111
                       +  +  S    +             I         L  L+V++N    
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI- 297

Query: 112 HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171
            LP    +L RL      FN L+  +P        L+ L +  N      P+   ++  L
Sbjct: 298 ELPALPPRLERL---IASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDL 349

Query: 172 EVFN 175
            + +
Sbjct: 350 RMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGN 184
              +  N  S  I +   +   L+ L + NN     +P     L +L    A +N +   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHL-AE 318

Query: 185 IPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218
           +P    N      L++ YN L+    I   +  L
Sbjct: 319 VPELPQNLKQ---LHVEYNPLREFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 78  LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137
           L+L+   L  T+  HL  L  +  LD++HN  R   P  L  LR L  ++   N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 138 PTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYN 179
                   +LQ L L NN          L +  +L + N   N
Sbjct: 60  GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 82  DIGLGGTIPPHLGNLTFLVSLDVAHNNFRG----HLPNELGQLRRLRFIRFGFNKLSGSI 137
           D G+           + L  L +A  +        L   L     LR +    N L  + 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 138 PTWIG-----VLSKLQTLRLYNNSFTGPIPNSLFNLSK 170
              +          L+ L LY+  ++  + + L  L K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 123 LRFIRFGFNKLSGS-IPTWIGVLSKLQTLRLYNNSFTG----PIPNSLFNLSKLEVFNAM 177
           ++ +     +LS +     + +L + Q +RL +   T      I ++L     L   N  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 178 YNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207
            N +       +          +   +LQ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 101 SLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKLQTLRLYNNSFTG 159
           +LD+   N     P+  G+L     I F   +     P        ++Q + L N+    
Sbjct: 4   TLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 160 -PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS 194
             +   L   SKL+  +     +   I + +   S+
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 96

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 106 HNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 165
             N +      L  L +L  ++   NK+S   P  +  L  L  + L NN  +   P  L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213

Query: 166 FNLSKLEVFN 175
            N S L +  
Sbjct: 214 ANTSNLFIVT 223

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 106 HNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 157
           +NN        L  L  L  +    N L  +IP        L    L+ N +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.9

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.1e-31  Score=211.19  Aligned_cols=186  Identities=31%  Similarity=0.545  Sum_probs=168.0

Q ss_pred             CChHHHHHHHHHHHhccCCCCccCCCCCCCCCCC--ccceeeeCCC--CCcEEEEEcCCCCCcc--cCCcCCCCCCCCCE
Q 045729           28 NLTADQSALLAFKARVVDYRSVLTNNWSISYPIC--TWIGISCGSR--HQRVTALNLSDIGLGG--TIPPHLGNLTFLVS  101 (218)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~--~~~l~~l~l~~~~l~~--~~~~~l~~l~~L~~  101 (218)
                      |.++|+.||++||+++.++. .+.+ |..+++||  .|.||+|+..  ..+|+.|+++++++.|  .+|+.+.++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~s-W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCC-CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            67899999999999998764 5777 98888999  4999999863  3489999999999987  58899999999999


Q ss_pred             EEccC-CcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCc
Q 045729          102 LDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV  180 (218)
Q Consensus       102 L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~  180 (218)
                      |++++ |++.|.+|..+.++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+.+++.++.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99986 89999999999999999999999999998888889999999999999999998999999999999999999999


Q ss_pred             ccccCCccCCCCCCC-CEEEccCCcCcccCCC-CCCC
Q 045729          181 IDGNIPSRIGNFSSP-FILNLGYNNLQGLLTI-FGRL  215 (218)
Q Consensus       181 l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~-~~~l  215 (218)
                      +.+.+|..++.+..+ +.+++++|++++.+|. ++.+
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            999999999888775 8999999999988775 5444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=7.6e-22  Score=156.36  Aligned_cols=147  Identities=29%  Similarity=0.454  Sum_probs=113.3

Q ss_pred             CCcEEEEEcCC-CCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729           72 HQRVTALNLSD-IGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL  150 (218)
Q Consensus        72 ~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  150 (218)
                      .+++++|++++ |+++|.+|+.+.++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+..++.++++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            57899999987 88999999999999999999999998887666666666666666666666665556556555555555


Q ss_pred             EccCCcccCCCC--------------------------------------------------------------------
Q 045729          151 RLYNNSFTGPIP--------------------------------------------------------------------  162 (218)
Q Consensus       151 ~l~~n~l~~~~p--------------------------------------------------------------------  162 (218)
                      ++++|.+.+.+|                                                                    
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555554433222                                                                    


Q ss_pred             ---ccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          163 ---NSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       163 ---~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                         ..+..+++|+.|++++|+++|.+|+.++++++|++|+|++|+++|.+|.++++++|
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L  293 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF  293 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGS
T ss_pred             ccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCC
Confidence               12334677889999999999999999999999999999999999999988877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.9e-19  Score=132.86  Aligned_cols=127  Identities=23%  Similarity=0.272  Sum_probs=84.9

Q ss_pred             EEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccC-CcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCc
Q 045729           78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-PNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS  156 (218)
Q Consensus        78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  156 (218)
                      ++.++++++ .+|+.+.  +++++|++++|.+++.+ +..|.++++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            344445555 5565543  56777777777776433 3445667777777777777775556666777777777777777


Q ss_pred             ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          157 FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       157 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ++...|..|.++++|++|+|++|++++..|..|..+++|+++++++|++..
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            775555566777777777777777775555566777777777777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3e-18  Score=134.87  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      ++..+.|.|.++.|.+.         .+++++|++++|+++...+..|.++++|++|++++|.+....|..|..+++|++
T Consensus         4 ~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_           4 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence            35567799999999742         367999999999998544457899999999999999999666778999999999


Q ss_pred             EEccCcccc
Q 045729          126 IRFGFNKLS  134 (218)
Q Consensus       126 L~l~~n~l~  134 (218)
                      |++++|+++
T Consensus        84 L~l~~n~l~   92 (305)
T d1xkua_          84 LYLSKNQLK   92 (305)
T ss_dssp             EECCSSCCS
T ss_pred             ecccCCccC
Confidence            999888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-18  Score=133.15  Aligned_cols=143  Identities=24%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.|++++|.+++..+..|.++++|++|++++|+++ .+| .+..+++|++|++++|+++ ..+..+..+++|+++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            46777777777777554556777777777777777776 443 2456677777777777766 44555555555555555


Q ss_pred             cCCc------------------------ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729          153 YNNS------------------------FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       153 ~~n~------------------------l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      ++|.                        ++...+..+..+++++.+++++|++++..+..+..+++|++|+|++|+++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc
Confidence            5554                        4422333445677888888888888866666788888999999999998876


Q ss_pred             CCCCCCCCCC
Q 045729          209 LTIFGRLRLL  218 (218)
Q Consensus       209 ~p~~~~l~~L  218 (218)
                      ++.+..+++|
T Consensus       188 p~~~~~~~~L  197 (266)
T d1p9ag_         188 PKGFFGSHLL  197 (266)
T ss_dssp             CTTTTTTCCC
T ss_pred             ChhHCCCCCC
Confidence            6666665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-18  Score=131.29  Aligned_cols=133  Identities=24%  Similarity=0.163  Sum_probs=98.6

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.++ ..+..+..+++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..++++++++
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcc
Confidence            445555555555555 2344455556666666666665544444455666666777777777644444566789999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      +++|++++..+..+..+++|++|++++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999766777889999999999999999 89999999999999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.7e-17  Score=127.35  Aligned_cols=144  Identities=18%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc-------------------------CCcccCCCCCCcEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH-------------------------LPNELGQLRRLRFIR  127 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------------------~p~~~~~l~~L~~L~  127 (218)
                      ..++.|++++|.++...+..|.++++|++|++++|.+...                         .+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3456677777777644444566677777777766655321                         123344556666666


Q ss_pred             ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +++|.+....+..+...++|+.+++++|.+++..+..+..+++|+.|++++|++++..+..+.++++|+.+++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            66666553333344445555555555555553333444455555555555555554444445555555555555555555


Q ss_pred             cCCC-CCCCC
Q 045729          208 LLTI-FGRLR  216 (218)
Q Consensus       208 ~~p~-~~~l~  216 (218)
                      ..|. |+.++
T Consensus       192 i~~~~f~~l~  201 (284)
T d1ozna_         192 VHPHAFRDLG  201 (284)
T ss_dssp             ECTTTTTTCT
T ss_pred             cChhHhhhhh
Confidence            4443 44433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-17  Score=128.77  Aligned_cols=135  Identities=19%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ++++.+++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            56666777776666445555666666777777777776433445666666777777777766444556666677777777


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      ++|++++..|..+..+++|++|++++|++.+..+..++.+++|++|++++|++..
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            7777666566666666777777777777765555566666777777777766653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.5e-17  Score=110.77  Aligned_cols=101  Identities=30%  Similarity=0.415  Sum_probs=55.8

Q ss_pred             EEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCc
Q 045729           77 ALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS  156 (218)
Q Consensus        77 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  156 (218)
                      +|++++|+++ .++ .+.++++|++|++++|.++ .+|+.+..+++|++|++++|+++ .+| .+..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            4566666665 333 2555566666666666665 45555555666666666666665 343 25555666666666665


Q ss_pred             ccCCC-CccccCCCCCcEEecccCccc
Q 045729          157 FTGPI-PNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       157 l~~~~-p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      ++... ...+..+++|+.+++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55211 133455555555666555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=7.8e-18  Score=124.09  Aligned_cols=128  Identities=27%  Similarity=0.371  Sum_probs=110.9

Q ss_pred             CCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccC-CcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729           56 ISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTI-PPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF  125 (218)
Q Consensus        56 ~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  125 (218)
                      +..+.|.|..|.|...         ..+++.|++++|.+++.+ +..|.++++|++|++++|.+....+..+..+++|++
T Consensus         3 P~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_           3 PAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             CTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            3456688999999642         257999999999998655 456788999999999999999778888999999999


Q ss_pred             EEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc
Q 045729          126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG  183 (218)
Q Consensus       126 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~  183 (218)
                      |++++|++++..|..|.++++|++|++++|++++..|..|..+++|+++++++|.+..
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999996556678999999999999999997677788899999999999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.2e-16  Score=116.85  Aligned_cols=136  Identities=24%  Similarity=0.365  Sum_probs=112.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .+++++|++++|.+++. ++ +.++++|++|++++|.+. .++ .+.+++.|+.++++++... .. ..+..+++|+.++
T Consensus        61 l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~-~~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQIT-DI-DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccc-cc-cccchhhhhHHhh
Confidence            57899999999999854 33 889999999999999987 555 4889999999999999887 33 3477899999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|++. .++ .+..+++++.|++.+|+++ .++ .++++++|++|++++|+++.. +.++++++|
T Consensus       135 l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~~i-~~l~~L~~L  196 (199)
T d2omxa2         135 LSSNTIS-DIS-ALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVSDI-SVLAKLTNL  196 (199)
T ss_dssp             CCSSCCC-CCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred             hhhhhhc-ccc-ccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCCCC-ccccCCCCC
Confidence            9999987 444 5888999999999999998 444 588999999999999999874 455555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=8.1e-17  Score=110.28  Aligned_cols=103  Identities=22%  Similarity=0.301  Sum_probs=91.7

Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729          100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN  179 (218)
Q Consensus       100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N  179 (218)
                      ++|++++|+++ .++ .+..+++|++|++++|+++ .+|+.++.+++|++|++++|.++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999998 666 4889999999999999999 88888999999999999999999 565 5889999999999999


Q ss_pred             cccccCC--ccCCCCCCCCEEEccCCcCccc
Q 045729          180 VIDGNIP--SRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       180 ~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      +++ .+|  ..++.+++|+++++++|+++..
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            998 444  4678899999999999999764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=114.31  Aligned_cols=122  Identities=24%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch-hhcCCCCCCEEE
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLR  151 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~  151 (218)
                      .++++|++++|+++ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++ .+|. .+..+++|++|+
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccce
Confidence            56889999999998 55666677899999999999998 554 4788999999999999998 4544 456789999999


Q ss_pred             ccCCcccCCCC--ccccCCCCCcEEecccCcccccCCc----cCCCCCCCCEEEc
Q 045729          152 LYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPS----RIGNFSSPFILNL  200 (218)
Q Consensus       152 l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L  200 (218)
                      +++|.++ .++  ..+..+++|+++++++|.++ ..|.    .+..+++|++||-
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999987 444  35778899999999999987 4553    4677899998873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.2e-16  Score=114.36  Aligned_cols=136  Identities=29%  Similarity=0.319  Sum_probs=112.4

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.|++++|.+. .++ .+..++.++.++
T Consensus        67 l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-cccccccccccc
Confidence            5789999999999885 33 3678999999999999998 555 5788999999999999887 444 578889999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.+++  +..+..+++|+.+++++|+++ .++ .+.++++|+.|++++|+++.. |.+.++++|
T Consensus       141 ~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L  202 (210)
T d1h6ta2         141 LGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNL  202 (210)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCBC-GGGTTCTTC
T ss_pred             cccccccc--ccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCCCCC-hhhcCCCCC
Confidence            99999873  345678899999999999998 454 488999999999999999864 567776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.3e-17  Score=115.34  Aligned_cols=113  Identities=18%  Similarity=0.102  Sum_probs=96.1

Q ss_pred             CCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCc
Q 045729           93 LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE  172 (218)
Q Consensus        93 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  172 (218)
                      +.+...+++|++++|+++ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            567778999999999998 67776778999999999999998 664 488999999999999999944344456799999


Q ss_pred             EEecccCcccccCC--ccCCCCCCCCEEEccCCcCcccC
Q 045729          173 VFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGLL  209 (218)
Q Consensus       173 ~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~  209 (218)
                      .|++++|+++ .++  ..+..+++|+++++++|+++..+
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cceecccccc-ccccccccccccccchhhcCCCcccccc
Confidence            9999999998 444  36788999999999999987654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.4e-15  Score=109.19  Aligned_cols=136  Identities=26%  Similarity=0.401  Sum_probs=113.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..+++.|++++++++. + +.+..+++|++|++++|+++ .+++ +.++++|++|++++|.+. .++. +..++.|++++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc-ccCCcccccccccccccc-cccc-ccccccccccc
Confidence            3578999999999873 3 34788999999999999998 4443 889999999999999988 5654 88999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      +++|.... . ..+..+++|+.+++++|.+. .++ .+..+++|++|++.+|++++. +.++++++|
T Consensus       113 l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L  174 (199)
T d2omxa2         113 LFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-KPLANLTTL  174 (199)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTC
T ss_pred             cccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-ccccCCCCC
Confidence            99998873 3 35788999999999999997 444 688999999999999999875 446666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.6e-14  Score=108.69  Aligned_cols=138  Identities=22%  Similarity=0.337  Sum_probs=105.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc-------------
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP-------------  138 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-------------  138 (218)
                      .++++.+++++|.+++..|  +.++++++++++++|.++ .++ .+.++++|++++++++...+..+             
T Consensus        62 l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhch
Confidence            6789999999998875433  788889999999888887 444 46778888888888776552211             


Q ss_pred             -------hhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          139 -------TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       139 -------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                             ..+..+++|+++++++|.+.+ . ..+.++++|+.|++++|+++ .++ .++++++|++|++++|++++.+ .
T Consensus       138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~i~-~  212 (227)
T d1h6ua2         138 LNQITNISPLAGLTNLQYLSIGNAQVSD-L-TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVS-P  212 (227)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCBCG-G
T ss_pred             hhhhchhhhhcccccccccccccccccc-c-hhhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCCCc-c
Confidence                   224567789999999998873 3 34788999999999999998 454 4889999999999999998754 4


Q ss_pred             CCCCCCC
Q 045729          212 FGRLRLL  218 (218)
Q Consensus       212 ~~~l~~L  218 (218)
                      +.++++|
T Consensus       213 l~~l~~L  219 (227)
T d1h6ua2         213 LANTSNL  219 (227)
T ss_dssp             GTTCTTC
T ss_pred             cccCCCC
Confidence            6666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.8e-14  Score=107.24  Aligned_cols=135  Identities=20%  Similarity=0.286  Sum_probs=112.4

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL  152 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  152 (218)
                      ..++.++++++.++. ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .+| .+..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-Ccc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            468899999999874 33 3788999999999999998 455 4688999999999999998 566 4888999999999


Q ss_pred             cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729          153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL  218 (218)
Q Consensus       153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L  218 (218)
                      ++|.+. .+ ..+..++.++.+++++|.+++  +..+..+++|+++++++|.+++.. .++++++|
T Consensus       120 ~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L  180 (210)
T d1h6ta2         120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKL  180 (210)
T ss_dssp             TTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred             cccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccccc-cccCCCCC
Confidence            999987 44 457889999999999999973  446778999999999999998754 46666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=3.1e-14  Score=111.53  Aligned_cols=130  Identities=23%  Similarity=0.237  Sum_probs=109.7

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .+.++.+++++|++. .+|..+  +++++.|++++|...+..+..+.+++.+++|++++|.+++..+..+..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            357888999999887 455543  68899999999999888888899999999999999999966677888999999999


Q ss_pred             ccCCcccCCCCccccCCCCCcEEecccCcccccCCc-------cCCCCCCCCEEEccCCcCc
Q 045729          152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS-------RIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------~~~~l~~L~~L~L~~N~l~  206 (218)
                      +++|.++ .+|.++..+++|++|++++|+++ .++.       ....+.+|+.|++++|++.
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999998 78888999999999999999998 4442       2345678999999999886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=2.1e-14  Score=115.39  Aligned_cols=138  Identities=27%  Similarity=0.369  Sum_probs=96.8

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccC--------------
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI--------------  137 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--------------  137 (218)
                      .++++.+++++|.++. + +.+..+++|+.+++++|.+++ ++ .+..+++|++++++++.+++..              
T Consensus       218 ~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            3566777777776653 2 245566666777777666663 22 2555666666666666554211              


Q ss_pred             ------chhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          138 ------PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       138 ------p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                            ...+..+++++++++++|++++ ++ .+..+++|+.|++++|+++ .++ .++++++|++|++++|++++.+| 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence                  1235667889999999999984 43 3788999999999999998 455 68999999999999999998765 


Q ss_pred             CCCCCCC
Q 045729          212 FGRLRLL  218 (218)
Q Consensus       212 ~~~l~~L  218 (218)
                      +.++++|
T Consensus       369 l~~l~~L  375 (384)
T d2omza2         369 LANLTRI  375 (384)
T ss_dssp             GTTCTTC
T ss_pred             hccCCCC
Confidence            6666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.7e-14  Score=98.96  Aligned_cols=103  Identities=17%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             EEcCCCCCcccCCcCCCCCCCCCEEEccCC-cccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCc
Q 045729           78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHN-NFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS  156 (218)
Q Consensus        78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  156 (218)
                      ++.+++++. ..|..+..++++++|++.+| .++..-+..|.++++|+.|++++|+++...|..|..+++|++|++++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            455566655 56777888999999999766 4874445678999999999999999995556779999999999999999


Q ss_pred             ccCCCCccccCCCCCcEEecccCccc
Q 045729          157 FTGPIPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       157 l~~~~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      ++ .+|.......+|+.|++++|.+.
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             Cc-ccChhhhccccccccccCCCccc
Confidence            99 67766665668999999999885

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.4e-14  Score=106.96  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=105.6

Q ss_pred             CCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEc
Q 045729           59 PICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRF  128 (218)
Q Consensus        59 ~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l  128 (218)
                      +.|....+.|...         .++++.|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            4567777888531         2478999999999985455578899999999999998875444 35667777777776


Q ss_pred             cC-ccccccCchhhcCCCCCCEEEccCCcccCCCCc-------------------------cccCC-CCCcEEe------
Q 045729          129 GF-NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN-------------------------SLFNL-SKLEVFN------  175 (218)
Q Consensus       129 ~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-------------------------~l~~l-~~L~~L~------  175 (218)
                      .. |.+....+..+..+++|+++++++|.+....+.                         .+..+ ..++.++      
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            53 556545555677777788877777766421110                         00111 1223333      


Q ss_pred             ------------------cccCcccccCCc-cCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729          176 ------------------AMYNVIDGNIPS-RIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL  218 (218)
Q Consensus       176 ------------------L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L  218 (218)
                                        +++|+++ .+|. .|.++++|++|++++|+++..++. |.++++|
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             cccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence                              3445555 4544 477889999999999999977665 7776643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.49  E-value=4.1e-17  Score=120.75  Aligned_cols=110  Identities=23%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729           92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL  171 (218)
Q Consensus        92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  171 (218)
                      .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+ +.+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHS
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-ccccccccc
Confidence            3444455555555555554 333 2444455555555555554 34433333344555555555544 22 223444455


Q ss_pred             cEEecccCcccccCC--ccCCCCCCCCEEEccCCcCcc
Q 045729          172 EVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQG  207 (218)
Q Consensus       172 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~  207 (218)
                      +.|++++|+++ .++  ..+..+++|+.|++++|++..
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            55555555544 222  234445555555555554433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=2.2e-13  Score=102.30  Aligned_cols=138  Identities=21%  Similarity=0.286  Sum_probs=109.3

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      ..+++.+++.+++++ .+ +.+.++++|++|++++|.+++ ++ .+..+++++++++++|.++ .++ .+..+++|++++
T Consensus        40 l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeec-cc-ccccccccccccccccccc-ccc-cccccccccccc
Confidence            357899999999998 45 458899999999999999984 33 3889999999999999988 554 478899999999


Q ss_pred             ccCCcccCCC--------------------CccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729          152 LYNNSFTGPI--------------------PNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI  211 (218)
Q Consensus       152 l~~n~l~~~~--------------------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  211 (218)
                      ++++...+..                    ...+...++|+.|++++|.+.+ . ..++++++|++|++++|++++. +.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~Ls~n~l~~l-~~  190 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-L-TPLANLSKLTTLKADDNKISDI-SP  190 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-c-hhhcccccceecccCCCccCCC-hh
Confidence            9988765311                    1224567789999999998873 3 3488999999999999999874 44


Q ss_pred             CCCCCCC
Q 045729          212 FGRLRLL  218 (218)
Q Consensus       212 ~~~l~~L  218 (218)
                      ++++++|
T Consensus       191 l~~l~~L  197 (227)
T d1h6ua2         191 LASLPNL  197 (227)
T ss_dssp             GGGCTTC
T ss_pred             hcCCCCC
Confidence            6655543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=1.8e-13  Score=109.78  Aligned_cols=123  Identities=27%  Similarity=0.383  Sum_probs=92.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--------------------CCcccCCCCCCcEEEccCcc
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--------------------LPNELGQLRRLRFIRFGFNK  132 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------------~p~~~~~l~~L~~L~l~~n~  132 (218)
                      ++++.+++++|.+++..+  +..+++|++++++++.+++.                    -...+..+++++.|++++|+
T Consensus       241 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            556666666666654222  45556666666665555421                    12335677899999999999


Q ss_pred             ccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729          133 LSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       133 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      +++ ++ .+..+++|++|++++|+++ .++ .+.++++|++|++++|++++ +++ +.++++|+.|++++|
T Consensus       319 l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEECCCE
T ss_pred             CCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC-Chh-hccCCCCCEeeCCCC
Confidence            984 44 3789999999999999998 454 68899999999999999995 443 889999999999998

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.5e-13  Score=94.89  Aligned_cols=104  Identities=15%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEEEccCc-cccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEeccc
Q 045729          100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY  178 (218)
Q Consensus       100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  178 (218)
                      +.++.+++++. ..|..+..+++|+.|++++| .++..-+..|..+++|+.|++++|+++...|..|..+++|++|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            33444444444 34444444555555555433 24422223344555555555555555533344444555555555555


Q ss_pred             CcccccCCccCCCCCCCCEEEccCCcC
Q 045729          179 NVIDGNIPSRIGNFSSPFILNLGYNNL  205 (218)
Q Consensus       179 N~l~~~~p~~~~~l~~L~~L~L~~N~l  205 (218)
                      |+++ .+|.......+|+.|++++|++
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCc-ccChhhhccccccccccCCCcc
Confidence            5554 3443333333455555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.4e-15  Score=112.42  Aligned_cols=122  Identities=21%  Similarity=0.227  Sum_probs=100.9

Q ss_pred             CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729           72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR  151 (218)
Q Consensus        72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  151 (218)
                      .++++.|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .++ .+..+++|++|+
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccc
Confidence            578999999999998 454 5889999999999999998 67765556678999999999998 554 478889999999


Q ss_pred             ccCCcccCCCC--ccccCCCCCcEEecccCcccccCCcc----------CCCCCCCCEEE
Q 045729          152 LYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPSR----------IGNFSSPFILN  199 (218)
Q Consensus       152 l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~  199 (218)
                      +++|.++ .++  ..+..+++|+.|++++|.+....+..          +..+++|+.||
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999998 444  46789999999999999987443322          45688999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.5e-10  Score=87.07  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc-hhhcCCCCCCEEEccC
Q 045729           76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLRLYN  154 (218)
Q Consensus        76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~  154 (218)
                      ++++.++.+++ .+|+.+.  +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            36788888888 7887664  689999999999984344468999999999999999875554 4678899999999864


Q ss_pred             -CcccCCCCccccCCCCCcEEecccCccc
Q 045729          155 -NSFTGPIPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       155 -n~l~~~~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                       |.+....+..+.++++|+.+++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             6677566777899999999999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.12  E-value=6.8e-10  Score=87.24  Aligned_cols=121  Identities=23%  Similarity=0.308  Sum_probs=81.1

Q ss_pred             cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729           74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY  153 (218)
Q Consensus        74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  153 (218)
                      ++++||+++++++ .+|+.   .++|++|++++|+++ .+|..   +.+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            4667888888877 56653   367788888888887 67754   346778888888776 55431   2457888888


Q ss_pred             CCcccCCCCccccCCCCCcEEecccCccccc------------------CCccCCCCCCCCEEEccCCcCccc
Q 045729          154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGN------------------IPSRIGNFSSPFILNLGYNNLQGL  208 (218)
Q Consensus       154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------------------~p~~~~~l~~L~~L~L~~N~l~~~  208 (218)
                      +|.+. .+|. +..+++|+.+++++|.+...                  .+..+..++.++.+++++|.....
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccc
Confidence            88877 5664 46677888888877766521                  122345566777788777765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.10  E-value=4.3e-10  Score=88.42  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=85.8

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEec
Q 045729           97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNA  176 (218)
Q Consensus        97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  176 (218)
                      .++++|+++++.++ .+|+.   +++|++|++++|+++ .+|..   +.+|+.|++++|+++ .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            36889999999998 78863   578999999999999 88874   468999999999988 5543 1  247999999


Q ss_pred             ccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCC
Q 045729          177 MYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL  215 (218)
Q Consensus       177 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l  215 (218)
                      ++|.+. .+|. ++.+++|++|++++|.+...++....+
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l  142 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSL  142 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccccccc
Confidence            999998 6774 688999999999999988766554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.6e-11  Score=93.82  Aligned_cols=131  Identities=15%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCC-ccccc-CCcccCCCCCCcEEEccCcc-cccc-Cchhhc-CCCCC
Q 045729           73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN-NFRGH-LPNELGQLRRLRFIRFGFNK-LSGS-IPTWIG-VLSKL  147 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~-~l~~L  147 (218)
                      +++++|+++++.+++..+..+.++++|++|+++++ .++.. +..-...+++|++|+++++. ++.. +...+. ..++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            45566666666555444445555566666666653 33311 11112345566666665532 2210 111111 12334


Q ss_pred             CEEEccCCc--ccCC-CCccccCCCCCcEEecccC-cccccCCccCCCCCCCCEEEccCC
Q 045729          148 QTLRLYNNS--FTGP-IPNSLFNLSKLEVFNAMYN-VIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       148 ~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      +.|+++++.  ++.. +..-..++++|++|++++| .+++.....+.++++|++|+++++
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            444443321  1100 1111234566666666664 355445555666666777777663

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.7e-10  Score=87.98  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             CCCcEEEEEcCCC-CCccc-CCcCCCCCCCCCEEEccCCc-cccc-CCcccC-CCCCCcEEEccCcc--ccc-cCchhhc
Q 045729           71 RHQRVTALNLSDI-GLGGT-IPPHLGNLTFLVSLDVAHNN-FRGH-LPNELG-QLRRLRFIRFGFNK--LSG-SIPTWIG  142 (218)
Q Consensus        71 ~~~~l~~l~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~-~p~~~~-~l~~L~~L~l~~n~--l~~-~~p~~~~  142 (218)
                      ..++++.|+++++ .++.. +..-...+++|++|+++++. ++.. +...+. ..++|+.|+++++.  ++. .+.....
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~  172 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  172 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence            3578999999995 56532 22223457899999999863 4321 122222 35789999998653  332 2333345


Q ss_pred             CCCCCCEEEccCC-cccCCCCccccCCCCCcEEecccC-cccccCCccCCCCCCCCEEEccCC
Q 045729          143 VLSKLQTLRLYNN-SFTGPIPNSLFNLSKLEVFNAMYN-VIDGNIPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       143 ~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N  203 (218)
                      .+++|++|++++| .+++.....+.++++|++|+++++ .+++.....++++++|++|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7899999999986 467666777888999999999995 676655667888999999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.67  E-value=1.1e-09  Score=86.61  Aligned_cols=135  Identities=14%  Similarity=0.205  Sum_probs=87.0

Q ss_pred             CcEEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCccccc-----CCcccCCCCCCcEEEccCcccccc----Cch
Q 045729           73 QRVTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRGH-----LPNELGQLRRLRFIRFGFNKLSGS----IPT  139 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~  139 (218)
                      +.++.+++++|.+...    +...+...+.+++|++++|.+...     +...+...++|+.|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            3455666666655421    222244567888888888887632     223456678888999988887532    334


Q ss_pred             hhcCCCCCCEEEccCCcccCC----CCccccC--CCCCcEEecccCccccc----CCccCC-CCCCCCEEEccCCcCcc
Q 045729          140 WIGVLSKLQTLRLYNNSFTGP----IPNSLFN--LSKLEVFNAMYNVIDGN----IPSRIG-NFSSPFILNLGYNNLQG  207 (218)
Q Consensus       140 ~~~~l~~L~~L~l~~n~l~~~----~p~~l~~--l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~  207 (218)
                      .+..+++|++|++++|.+++.    +-..+..  .+.|+.|++++|.++..    +...+. +.++|++|++++|.+..
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            566788889999998887643    2222222  35788899999887632    223332 56788899999988754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.66  E-value=1e-09  Score=86.73  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             CCCCCcEEEccCcccccc-----CchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCcccccCC---
Q 045729          119 QLRRLRFIRFGFNKLSGS-----IPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGNIP---  186 (218)
Q Consensus       119 ~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p---  186 (218)
                      ..+.|+.+++++|.+...     +...+..+++|+.|++++|.++..    +...+...++|+.|++++|.+++.-.   
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            345566666666665421     122344556666666666665421    22334556666666666666653211   


Q ss_pred             -ccCC--CCCCCCEEEccCCcCc
Q 045729          187 -SRIG--NFSSPFILNLGYNNLQ  206 (218)
Q Consensus       187 -~~~~--~l~~L~~L~L~~N~l~  206 (218)
                       ..+.  ..+.|++|++++|.++
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHhhhccCCCCCEEECCCCcCC
Confidence             1122  2245667777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.4e-10  Score=79.62  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             CCcccCCCCCCcEEEccCcccccc--CchhhcCCCCCCEEEccCCcccCCCCc-cccCCCCCcEEecccCcccccCCc--
Q 045729          113 LPNELGQLRRLRFIRFGFNKLSGS--IPTWIGVLSKLQTLRLYNNSFTGPIPN-SLFNLSKLEVFNAMYNVIDGNIPS--  187 (218)
Q Consensus       113 ~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~--  187 (218)
                      ++..+..+++|++|++++|+++..  ++..+..+++|+.|++++|.++ .+++ .......|+.+++++|.+......  
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccch
Confidence            333345677888888888888732  2344567788888888888887 3333 223445688888888888744332  


Q ss_pred             -----cCCCCCCCCEEE
Q 045729          188 -----RIGNFSSPFILN  199 (218)
Q Consensus       188 -----~~~~l~~L~~L~  199 (218)
                           .+..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                 245678888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.2e-09  Score=88.61  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccc----cCCcccCCCCCCcEEEccCcccccc----Cchhhc-
Q 045729           73 QRVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRG----HLPNELGQLRRLRFIRFGFNKLSGS----IPTWIG-  142 (218)
Q Consensus        73 ~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-  142 (218)
                      .+++.||++++++++. +..-+..++++++|++++|+++.    .+...+...++|++|++++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4688899999988753 12334556888889999888762    2334456778888888888887521    112222 


Q ss_pred             CCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccc
Q 045729          143 VLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVID  182 (218)
Q Consensus       143 ~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~  182 (218)
                      ...+|++|++++|.+++.    ++..+..+++|+.|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            224688888888887632    3445667788888888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.6e-09  Score=86.59  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             CCCEEEccCCccccc-CCcccCCCCCCcEEEccCccccc----cCchhhcCCCCCCEEEccCCcccCC----CCcccc-C
Q 045729           98 FLVSLDVAHNNFRGH-LPNELGQLRRLRFIRFGFNKLSG----SIPTWIGVLSKLQTLRLYNNSFTGP----IPNSLF-N  167 (218)
Q Consensus        98 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~-~  167 (218)
                      +|++|++++|++++. +...+..++++++|++++|.++.    .+...+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777777632 12224456677777777776652    2234455667777777777766421    112222 2


Q ss_pred             CCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729          168 LSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ  206 (218)
Q Consensus       168 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  206 (218)
                      ..+|+.|++++|+++..    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            24677777777776532    3445566677777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3e-09  Score=75.15  Aligned_cols=91  Identities=13%  Similarity=-0.010  Sum_probs=64.0

Q ss_pred             CCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCC--CCccccCCCCCcEEecccCcccccCCc-cCCCCCC
Q 045729          118 GQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP--IPNSLFNLSKLEVFNAMYNVIDGNIPS-RIGNFSS  194 (218)
Q Consensus       118 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~  194 (218)
                      ..+..+..++...+... .++.....+++|++|++++|+++..  ++..+..+++|+.|++++|.++ .+++ .......
T Consensus        39 ~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~  116 (162)
T d1koha1          39 VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLK  116 (162)
T ss_dssp             TTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCC
T ss_pred             hhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccc
Confidence            33444444555444443 4455556789999999999999842  2344567899999999999998 4443 2234457


Q ss_pred             CCEEEccCCcCcccCC
Q 045729          195 PFILNLGYNNLQGLLT  210 (218)
Q Consensus       195 L~~L~L~~N~l~~~~p  210 (218)
                      |+.+++++|+++....
T Consensus       117 L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         117 LEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CSSCCCTTSTTSSSSS
T ss_pred             cceeecCCCCcCcCcc
Confidence            9999999999986543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=2.1e-06  Score=60.41  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             CCCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc------
Q 045729          119 QLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN------  184 (218)
Q Consensus       119 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~------  184 (218)
                      ..+.|++|++++|.+...    +...+...+.|++|++++|.++..    +-..+...++|+.|++++|.+...      
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            344455555555554321    112233345555555555555421    122334445566666665543310      


Q ss_pred             -CCccCCCCCCCCEEEccCC
Q 045729          185 -IPSRIGNFSSPFILNLGYN  203 (218)
Q Consensus       185 -~p~~~~~l~~L~~L~L~~N  203 (218)
                       +...+...++|+.|+++.+
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCCccEeeCcCC
Confidence             1222333456666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=4.6e-06  Score=58.55  Aligned_cols=110  Identities=10%  Similarity=0.088  Sum_probs=77.3

Q ss_pred             CCcEEEEEcCCC-CCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cc
Q 045729           72 HQRVTALNLSDI-GLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IP  138 (218)
Q Consensus        72 ~~~l~~l~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p  138 (218)
                      .+.++.|+++++ .++..    +-..+...++|++|++++|.+...    +...+...+.|+.|++++|.++..    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            467999999974 45432    333466778899999999998732    223344568899999999998743    22


Q ss_pred             hhhcCCCCCCEEEccCCcccCC-------CCccccCCCCCcEEecccCcc
Q 045729          139 TWIGVLSKLQTLRLYNNSFTGP-------IPNSLFNLSKLEVFNAMYNVI  181 (218)
Q Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~-------~p~~l~~l~~L~~L~L~~N~l  181 (218)
                      ..+...++|++|++++|.+...       +...+...++|+.++++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            3456678899999999876521       233345568899999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=2.3e-05  Score=54.64  Aligned_cols=87  Identities=9%  Similarity=0.132  Sum_probs=43.0

Q ss_pred             CCCCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEec--ccCcccc----
Q 045729          118 GQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNA--MYNVIDG----  183 (218)
Q Consensus       118 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~----  183 (218)
                      ...++|+.|++++|.++..    +-..+...++++.+++++|.++..    +...+...++|+.+++  ++|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3455566666666655422    112233445666666666655421    2233445556665433  3444432    


Q ss_pred             cCCccCCCCCCCCEEEccCCc
Q 045729          184 NIPSRIGNFSSPFILNLGYNN  204 (218)
Q Consensus       184 ~~p~~~~~l~~L~~L~L~~N~  204 (218)
                      .+...+...+.|+.|+++.+.
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeCcCCC
Confidence            122334455667777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.90  E-value=4e-05  Score=53.38  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=76.3

Q ss_pred             CCcEEEEEcCC-CCCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cc
Q 045729           72 HQRVTALNLSD-IGLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IP  138 (218)
Q Consensus        72 ~~~l~~l~l~~-~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p  138 (218)
                      .+.++.|++++ +.++..    +-..+...++|++|++++|.++..    +...+...+.++.+++++|.+...    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46889999997 456432    334456788999999999988743    223345678899999999988632    22


Q ss_pred             hhhcCCCCCCEEEcc--CCcccC----CCCccccCCCCCcEEecccCcc
Q 045729          139 TWIGVLSKLQTLRLY--NNSFTG----PIPNSLFNLSKLEVFNAMYNVI  181 (218)
Q Consensus       139 ~~~~~l~~L~~L~l~--~n~l~~----~~p~~l~~l~~L~~L~L~~N~l  181 (218)
                      ..+...++|+.+++.  +|.+..    .+...+...+.|+.|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            455677889886664  556642    2334455778999999987754