Citrus Sinensis ID: 045751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
LFSERLRRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHHccccEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEcccccccccHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHccccccEEEEccccccccccccccccccccEEEccccccccHHHHcccccccEEEEEEEccccHHHHHHHHHccccccEEEEEccccccccccccccccccccccccEEEEccccccccHHHccccccccEEEEEEcEEcccEEEEcccccccccEEEEcccccccEEEEcccccccccEEEEEcccccccccccccccccccEEEEEcccHHHHHHHHcccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEEEccccccEEEEEHHHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHEccccccccHccHHHHHHHHHHHHEccccccccccccccccHHHHccccEEccccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHcHHHcEEEEEccccccccccccccccccccccEEEEEEccccccccHHHHHHccccHEEEEEcccccccEEEEcccccHccEEEEEcccccccEEEEEccccccccEEEEccHHHHHHcccHHHHHHHHHEEEEccccHHHHHHHcccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
LFSERLRRLlsgeevtlPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAegfipdnnegtAEKYLEHLINRGFVEakkikvgsrintcsipnrwwPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANvnlseldsledFNLYLHSLLClsseshhldpldcEKICKMFKFLRVLDLGSLVlsqlpsgienLFFLRYLKLnipslkslpssflssisnlytldmpfsyiHHTADVFWEMNklrhlnfglftlpayprndcgslenlnfisalhprcctpdilgrlpnlrklrihgdlsnnqsllSKSLYKLSSleslklvneskmprlskivldeyqfppslthlsfsntelmedpmptleklpllQVLKLKknsylgrkltcgshgfpklKVLHLKSMLWLEewtmgtgampklecliidpcaylkrLPKQLWSVKRFKklelwrpqpelRQKLRDFKdkeqyniqlypygi
Flexible Loop (DISEMBL)
lfserlrrllsgeevtlpdaAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVgsrintcsipnrWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKltcgshgfpklKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRfkklelwrpqpelrqklrdfkdkeqyniqlypygi
Low Complexity Region (SEG)
LFSERLRRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNlylhsllclsseshhlDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPslkslpssflssisnlYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDlsnnqsllskslyklssleslklvneskMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTleklpllqvlklkkNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Disordered region (IsUnstruct)
**********************QLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQ*****KMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSL**LKLV******RLSKIVLDEYQFPPSLTHLSFS**********TLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ***************YNIQLY****
Disordered Region (DISOPRED)
LFS*R*RRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQ**DSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA******GSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Disordered Region (DISEMBL)
LFSERLRRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Disordered Region (DISPRO)
LFSERLRRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LFSERLRRLLSGEEVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYPYGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
P0C8S1	906	Probable disease resistan	yes	no	0.855	0.464	0.284	7e-31
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.839	0.458	0.284	2e-30
Q8W4J9	908	Disease resistance protei	no	no	0.843	0.457	0.280	8e-28
Q8W474	907	Probable disease resistan	no	no	0.788	0.427	0.302	3e-27
P59584	910	Disease resistance protei	no	no	0.829	0.448	0.271	6e-27
Q9FJK8	908	Probable disease resistan	no	no	0.841	0.455	0.263	2e-26
Q9XIF0	906	Putative disease resistan	no	no	0.853	0.463	0.302	2e-26
P0DI18	1049	Probable disease resistan	no	no	0.758	0.355	0.278	4e-22
P0DI17	1049	Probable disease resistan	no	no	0.758	0.355	0.278	4e-22
Q8W3K3	910	Putative disease resistan	no	no	0.849	0.459	0.271	2e-21

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 209/471 (44%), Gaps = 50/471 (10%)

Query: 59  EMIYQLWIAEGFIPDNNEG-----TAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWW 113
           ++++  W+AEG I   ++G     T E YLE L+ R  V  ++  + SRI  C + +   
Sbjct: 437 KILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMR 496

Query: 114 PALIQVALAGEFI--------YSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHS 165
              +  A    FI         S+ I+ +S  R     L +   L  L   +  N    S
Sbjct: 497 EVCLSKAKEENFIRVVKVPTTTSTTINAQSPCRSRRLVLHSGNALHMLGHKD--NKKARS 554

Query: 166 LLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL--SQLPSGIENLFFLRYLKLNIPS 223
           +L    E     P    +  +    LRVLDL  +     +LPS I +L  LR+L L    
Sbjct: 555 VLIFGVEEKFWKP----RGFQCLPLLRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAG 610

Query: 224 LKSLPSSFLSSISNLYTLD-MPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSL 282
           +  LPSS  +    L     +    + H  +V  EM +LR+L     ++PA  + + G L
Sbjct: 611 VSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPR-SMPAKTKLELGDL 669

Query: 283 ENLNFISALHPRCCTPDILGRLPNLRKLRI--HGDLSNNQSLLSKSLYKLSSLESLKLVN 340
            NL  ++    +  +   L R+  L  L +   G+ +    LLS  L +L +LE+L   +
Sbjct: 670 VNLESLTNFSTKHGSVTDLLRMTKLSVLNVIFSGECTFETLLLS--LRELRNLETLSFHD 727

Query: 341 ESKMP--------------RLSKIVL--------DEYQFPPSLTHLSFSNTELMEDPMPT 378
             K+                L  + L        D+Y+FPP L H+      + EDPMP 
Sbjct: 728 FQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFPDQYRFPPHLAHIWLIGCRMEEDPMPI 787

Query: 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLI 438
           LEKL  L+ + L   ++LGR++ C   GFP+L  L +     L EW +  G+MP L  L 
Sbjct: 788 LEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLT 847

Query: 439 IDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
           ID C  LK+LP  L  V   K+L++ R + E  ++L     ++ Y +Q  P
Sbjct: 848 IDNCKKLKQLPDGLKYVTCLKELKIERMKREWTERLV-IGGEDYYKVQHIP 897

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 206/467 (44%), Gaps = 54/467 (11%)

Query: 61  IYQLWIAEGFIPD-NNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           +Y  W AEG         + E YLE L+ R  V A+K  +  R+  C + +      I  
Sbjct: 438 LYSYWAAEGIYDGLTILDSGEDYLEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISK 497

Query: 120 ALAGEFIY-------SSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLH-----SLL 167
           A    F+        +S I  +S SR   +RLT +       S + F++  H     SLL
Sbjct: 498 AKVENFLQIIKVPTSTSTIIAQSPSRS--RRLTVH-------SGKAFHILGHKKKVRSLL 548

Query: 168 CLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL--SQLPSGIENLFFLRYLKLNIPSLK 225
            L  +      +      +    LRVLDL S+     +LPS I  L  LR+L L+   + 
Sbjct: 549 VLGLKEDLW--IQSASRFQSLPLLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLHQAVVS 606

Query: 226 SLPSSFLSSISNLY-TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLEN 284
            LPS+  +    LY  L +      H  +V  EM +LR+L+  L  +    + + G L N
Sbjct: 607 HLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRYLSLPL-DMHDKTKLELGDLVN 665

Query: 285 LNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKM 344
           L ++     +  +   L R+  LR   +          LS SL +   LE+L  +   K 
Sbjct: 666 LEYLWCFSTQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKT 725

Query: 345 ----------------------PRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKL 382
                                   LSKI  D++Q PP + H+      + EDPMP LEKL
Sbjct: 726 YMVDYVGEFVLDFIHLKKLSLGVHLSKIP-DQHQLPPHIAHIYLLFCHMEEDPMPILEKL 784

Query: 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC 442
             L+ ++L++ +++GR++ C   GFP+L+ L +     LEEW +  G+MP L  LII  C
Sbjct: 785 LHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSC 844

Query: 443 AYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
             L+ LP  L  V   K+L++   + E ++KL     ++ Y +Q  P
Sbjct: 845 EKLEELPDGLKYVTSLKELKIEGMKREWKEKL---VGEDYYKVQHIP 888

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score =  125 bits (314), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 207/470 (44%), Gaps = 55/470 (11%)

Query: 61  IYQLWIAEGFIPDNN-EGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           ++  W AEG    +  E + E YLE L+ R  V A    +  +   C + +      +  
Sbjct: 444 LFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSK 503

Query: 120 ALAGEFIY-------SSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLH-------S 165
           A    F+        +S I+ +S SR   +RL+       + S + F++  H       S
Sbjct: 504 AKEENFLQIIIDPTCTSTINAQSPSRS--RRLS-------IHSGKAFHILGHKNKTKVRS 554

Query: 166 LLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL--SQLPSGIENLFFLRYLKLNIPS 223
           L+    E  +   +    +      LRVLDL  +     +LP  I  L  LRYL L    
Sbjct: 555 LIVPRFEEDYW--IRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAK 612

Query: 224 LKSLPSSF-LSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSL 282
           +  LPS+     +     L +      H  +V  EM +LR+L+  L  +    + + G L
Sbjct: 613 VSHLPSTMRNLKLLLYLNLRVDTEEPIHVPNVLKEMIQLRYLSLPL-KMDDKTKLELGDL 671

Query: 283 ENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN-- 340
            NL ++     +  +   L R+  LR L +      N   LS SL +L +LE+L  +   
Sbjct: 672 VNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSL 731

Query: 341 ESKMP---------------------RLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL 379
           E+ M                      R+SKI  D++QFPP L HL      + EDPMP L
Sbjct: 732 ETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHLVHLFLIYCGMEEDPMPIL 790

Query: 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLII 439
           EKL  L+ ++L + ++LG ++ C   GFP+L V+ +     LEEW +  G+MP L  L I
Sbjct: 791 EKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTI 850

Query: 440 DPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
           D C  LK LP  L  +   K+L++   + E ++KL     ++ Y +Q  P
Sbjct: 851 DDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVP-GGEDYYKVQHIP 899

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 194/447 (43%), Gaps = 59/447 (13%)

Query: 49  HLVNIIVEEEEMIYQLWIAEGF--IPDNNEG-----TAEKYLEHLINRGFVEAKKIKVGS 101
           H +N+     E +   W AEG     D + G       + YLE L+ R  +  ++    S
Sbjct: 434 HKINV-----EKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRRNMIIWERDATAS 488

Query: 102 RINTCSIPNRWWPA---------LIQVALAGEFIYSSVIDQESD---SRKMIKRLTANVN 149
           R  TC + +               +Q+A+    + SS          SR+++ +    ++
Sbjct: 489 RFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPCRSRRLVYQCPTTLH 548

Query: 150 LSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMF---KFLRVLDLGSLVLS--QL 204
           +      +  N  L SL+ L    H L   + + +   F   K LRVLDL  +     +L
Sbjct: 549 VER----DINNPKLRSLVVLW---HDLWVENWKLLGTSFTRLKLLRVLDLFYVDFEGMKL 601

Query: 205 PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY-TLDMPFSYIHHTADVFWEMNKLRH 263
           P GI NL  LRYL L    +  LPSS  + +  +Y  LD+   +I    DVF  M++LR+
Sbjct: 602 PFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFIF-VPDVFMRMHELRY 660

Query: 264 LNFGLFTLPAY--PRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS 321
           L   L           +   LE L + S  H    + D+ G +  L  L I      +  
Sbjct: 661 LKLPLHMHKKTRLSLRNLVKLETLVYFSTWHS--SSKDLCG-MTRLMTLAIRLTRVTSTE 717

Query: 322 LLSKSLYKLSSLESLKLVN-ESKMPRLSKIVLD---------------EYQFPPSLTHLS 365
            LS S+  L +LE L +V   SK  R   IVLD               +  FP  LT + 
Sbjct: 718 TLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVK 777

Query: 366 FSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT 425
            S   L EDPMP LEKL  L+ + L K SY GR++ C   GFP+LK L +  +   EEW 
Sbjct: 778 LSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWL 837

Query: 426 MGTGAMPKLECLIIDPCAYLKRLPKQL 452
           +  G+MP LE L I  C  LK +P  L
Sbjct: 838 VEEGSMPLLETLSILDCEELKEIPDGL 864

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 199/450 (44%), Gaps = 42/450 (9%)

Query: 61  IYQLWIAEGFIPDNN-EGTAEKYLEHLINRGFVEAKKIKVGS--RINTCSIPNRWWPALI 117
           ++  W AEG    +  + + E YLE L+ R  V A    + S  +I  C + +      +
Sbjct: 444 LFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVIADNRYLISEFKIKNCQMHDMMREVCL 503

Query: 118 QVALAGEFIY-------SSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLS 170
             A    F+        +S I+ +S SR   +RL+ +   +        N  + SL+   
Sbjct: 504 SKAKEENFLQIIKDPTCTSTINAQSPSRS--RRLSIHSGKAFHILGHKRNAKVRSLIVSR 561

Query: 171 SESHHLDPLDCEKICKMFKFLRVLDLGSLVL--SQLPSGIENLFFLRYLKLNIPSLKSLP 228
            E      +    +      LRVLDL  +     +LP  I  L  LRYL+L    +  LP
Sbjct: 562 FEEDFW--IRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLRLYGAVVSHLP 619

Query: 229 SSF-LSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNF 287
           S+     +     L +    + H  +V  EM +LR+L+  +  +    + + G L NL +
Sbjct: 620 STMRNLKLLLYLNLSVHNEDLIHVPNVLKEMIELRYLSIPV-KMDDKTKLELGDLVNLEY 678

Query: 288 ISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESK---- 343
           +     +  +   L R+  LR L +      N   LS SL +L +LE+L ++   K    
Sbjct: 679 LYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMV 738

Query: 344 -------------------MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPL 384
                              + R+SKI  D++QFPP L H+      + EDPMP LEKL  
Sbjct: 739 DHMGEFVLDHFIHLKELGLVVRMSKIP-DQHQFPPHLVHIFLFYCGMEEDPMPILEKLHH 797

Query: 385 LQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAY 444
           L+ ++L+  +++GR++ C   GF +L  L +     LE+W +  G+MP L  L I  C  
Sbjct: 798 LKSVQLRYKAFVGRRMVCSKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEK 857

Query: 445 LKRLPKQLWSVKRFKKLELWRPQPELRQKL 474
           LK LP  L  +   K+L++   + E ++KL
Sbjct: 858 LKELPDGLKYITSLKELKIEGMKREWKEKL 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 195/471 (41%), Gaps = 57/471 (12%)

Query: 61  IYQLWIAEGFIPDNN-EGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           ++  W AEG    +  + + E YLE L+ R  V A    +    N C + +      +  
Sbjct: 444 LFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVIADNRYLSLEFNFCQMHDMMREVCLSK 503

Query: 120 ALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPL 179
           A    F+            ++IK  T+   ++           +HS        H  +P 
Sbjct: 504 AKEENFL------------QIIKDPTSTSTINAQSPSRSRRFSIHSGKAFHILGHRNNPK 551

Query: 180 DCEKICKMFK---------------FLRVLDLGSLVL--SQLPSGIENLFFLRYLKLNIP 222
               I   F+                LRVLDL  +     +LPS I  L  LRYL L   
Sbjct: 552 VRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSRVKFEGGKLPSSIGGLIHLRYLSLYGA 611

Query: 223 SLKSLPSSF-LSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS 281
            +  LPS+     +     L +      H  +V  EM +LR+L+     +    + + G 
Sbjct: 612 VVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRYLSLPQ-EMDDKTKLELGD 670

Query: 282 LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNE 341
           L NL ++     +  +   L R+  LR L +      N   LS SL +L +LE L ++  
Sbjct: 671 LVNLEYLWYFSTQHSSVTDLLRMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNVLFS 730

Query: 342 SKMP-----------------------RLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT 378
            ++                        R+SKI  D++QFPP L H+   +  + EDPMP 
Sbjct: 731 PEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHLAHIHLVHCVMKEDPMPI 789

Query: 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLI 438
           LEKL  L+ + L   +++GR++ C   GFP+L  L +     LEEW +  G+MP L  L 
Sbjct: 790 LEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLT 849

Query: 439 IDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
           I  C  LK LP  L  +   K+L++   + E ++KL     ++ Y +Q  P
Sbjct: 850 IHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVP-GGEDYYKVQHIP 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 209/466 (44%), Gaps = 46/466 (9%)

Query: 55  VEEEEMIYQLWIAEGFI-PDNNEGT-----AEKYLEHLINRGFVEAKKIKVGSRINTCSI 108
           +E E + Y +W AEG   P N EG      A+ Y+E L+ R  V +++  + SR   C +
Sbjct: 432 IEIERLSY-VWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQL 490

Query: 109 PNRWWPALIQVALAGEFIY-----SSVIDQESDSRKMIKRLTANVNLSELDSLEDF-NLY 162
            +      +  A    F+      +S     S +    +RL    N S      D  N  
Sbjct: 491 HDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVV-YNTSIFSGENDMKNSK 549

Query: 163 LHSLLCLSSESHHLDPLDCEKICKMFKF-----LRVLDLGSLVL--SQLPSGIENLFFLR 215
           L SLL +        P+   +      F     LRVLDL        +LPS I  L  L+
Sbjct: 550 LRSLLFI--------PVGYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKLIHLK 601

Query: 216 YLKLNIPSLKSLPSSFLSSISNLY-TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAY 274
           YL L   S+  LPSS  +  S LY  L +    + +  +VF EM +LR+L+   +   + 
Sbjct: 602 YLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLP-WERSSL 660

Query: 275 PRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSL----LSKSLYKL 330
            + + G+L  L  +     +  +   L R+  LR L+I   L + + L    LS +L  L
Sbjct: 661 TKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQI---LISGEGLHMETLSSALSML 717

Query: 331 SSLESLKLVNES-----KMPRL--SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLP 383
             LE L +         K P+L    ++ D   FP  LT +S     L EDPMPTLEKL 
Sbjct: 718 GHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLL 777

Query: 384 LLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCA 443
            L+V+ L  N+Y+GR++ C   GFP L  L +  +  LEEW +  G+MP L  L I  C 
Sbjct: 778 QLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCK 837

Query: 444 YLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
            LK +P  L  +   K+L + R   ++ QK      ++ Y +Q  P
Sbjct: 838 KLKEIPDGLRFISSLKELAI-RTNEKVFQKKVSKGGEDYYKMQHVP 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 62/435 (14%)

Query: 65  WIAEG-FIPDNNEG-----TAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQ 118
           W AEG F P + +G       + Y+E L+ R  V +++    SR  TC + +      + 
Sbjct: 449 WAAEGIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLL 508

Query: 119 VALAGEFI-YSSVIDQESDSRKMI--KRLTANVNLSELDSLEDFNL-YLHSLLCLSSESH 174
            A    F+  +S      +S  ++  +RL     ++ LD  +D N   L SL+ +++   
Sbjct: 509 KAKEENFLQITSSRTSTGNSLSIVTSRRLVYQYPIT-LDVEKDINDPKLRSLVVVANTYM 567

Query: 175 HLDPLDCEKICKMF---KFLRVLDL--GSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS 229
                    +   F   + LRVLD+    L   +L S I  L  LRYL L    +  +P 
Sbjct: 568 FWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPY 627

Query: 230 SFLSSISNLYTLDMPFSYIHHT--ADVFWEMNKLRHLNFGLFTLPAYPRN-------DCG 280
           S L ++  L  L++       T   +V  EM +LR+L        A P++       +  
Sbjct: 628 S-LGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYL--------ALPKDMGRKTKLELS 678

Query: 281 SLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN 340
           +L  L  +     + C+ + L  +  LR L I      +   L+ S+  L  LESL + +
Sbjct: 679 NLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITD 738

Query: 341 ESK------------------------MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM 376
                                      MPRLSK    E  FP  LT L   +  L EDPM
Sbjct: 739 LGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPM 794

Query: 377 PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLEC 436
           P LEKL  L+ L+L++ S+ G+++ C S GFP+L+ L +K +   E+W +   +MP L  
Sbjct: 795 PILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHT 854

Query: 437 LIIDPCAYLKRLPKQ 451
           L I  C  LK+LP +
Sbjct: 855 LDIRDCRKLKQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 62/435 (14%)

Query: 65  WIAEG-FIPDNNEG-----TAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQ 118
           W AEG F P + +G       + Y+E L+ R  V +++    SR  TC + +      + 
Sbjct: 449 WAAEGIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLL 508

Query: 119 VALAGEFI-YSSVIDQESDSRKMI--KRLTANVNLSELDSLEDFNL-YLHSLLCLSSESH 174
            A    F+  +S      +S  ++  +RL     ++ LD  +D N   L SL+ +++   
Sbjct: 509 KAKEENFLQITSSRTSTGNSLSIVTSRRLVYQYPIT-LDVEKDINDPKLRSLVVVANTYM 567

Query: 175 HLDPLDCEKICKMF---KFLRVLDL--GSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS 229
                    +   F   + LRVLD+    L   +L S I  L  LRYL L    +  +P 
Sbjct: 568 FWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPY 627

Query: 230 SFLSSISNLYTLDMPFSYIHHT--ADVFWEMNKLRHLNFGLFTLPAYPRN-------DCG 280
           S L ++  L  L++       T   +V  EM +LR+L        A P++       +  
Sbjct: 628 S-LGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYL--------ALPKDMGRKTKLELS 678

Query: 281 SLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN 340
           +L  L  +     + C+ + L  +  LR L I      +   L+ S+  L  LESL + +
Sbjct: 679 NLVKLETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITD 738

Query: 341 ESK------------------------MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM 376
                                      MPRLSK    E  FP  LT L   +  L EDPM
Sbjct: 739 LGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPM 794

Query: 377 PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLEC 436
           P LEKL  L+ L+L++ S+ G+++ C S GFP+L+ L +K +   E+W +   +MP L  
Sbjct: 795 PILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHT 854

Query: 437 LIIDPCAYLKRLPKQ 451
           L I  C  LK+LP +
Sbjct: 855 LDIRDCRKLKQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 197/460 (42%), Gaps = 42/460 (9%)

Query: 65  WIAEGFI-PDNNEG-----TAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQ 118
           W AEG + P +  G       E Y+E L+ R  V A++     R   C + +      + 
Sbjct: 449 WAAEGILEPRHYHGQTIRDVGESYIEELVRRNMVIAERDVTTLRFEACHLHDMMREVCLL 508

Query: 119 VALAGEFI-YSSVIDQESDSR-KMIKRLTANVNLSELDSLEDFNL-YLHSLLCLSSESHH 175
            A    F+  +S++   ++S+     R   + N + L    D N   L SLL +      
Sbjct: 509 KAKEENFVQIASILPPTANSQYPGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVWENRRK 568

Query: 176 LDPLDCEKICKMFKFLRVLDL--GSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLS 233
              L      ++ + LRVLDL         LPSGI  L  LRYL L++  +  LPSS L 
Sbjct: 569 SWKLLGSSFIRL-ELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSS-LG 626

Query: 234 SISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH 292
           ++  L  LD+          +    M++LR+L     T        C +L NL  +    
Sbjct: 627 NLRLLIYLDINVCTKSLFVPNCLMGMHELRYLRLPFNTSKEIKLGLC-NLVNLETLENFS 685

Query: 293 PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLV---NESKMPRL-- 347
               + + L  + +LR L I      ++  L  S+  +  LE+L +      SK  R+  
Sbjct: 686 TENSSLEDLRGMVSLRTLTIGLFKHISKETLFASILGMRHLENLSIRTPDGSSKFKRIME 745

Query: 348 SKIVLD------------------EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLK 389
             IVLD                  E  FP  LT +S     L+EDP+P LEKL  L+ ++
Sbjct: 746 DGIVLDAIHLKQLNLRLYMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVR 805

Query: 390 LKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLP 449
           L   ++ G+++     GFP+L  L++  +   EEW +  G+MP+L  L I  C  LK+LP
Sbjct: 806 LDFRAFCGKRMVSSDGGFPQLHRLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLP 865

Query: 450 KQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
             L  +   K L++ +   E+  +      +E Y +Q  P
Sbjct: 866 DGLRFIYSIKDLDMDKKWKEILSE----GGEEYYKVQHIP 901

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
359496848	856	PREDICTED: disease resistance RPP8-like	0.851	0.489	0.321	6e-46
147766035	902	hypothetical protein VITISV_038742 [Viti	0.851	0.464	0.317	1e-44
359491404	922	PREDICTED: probable disease resistance R	0.831	0.443	0.328	3e-38
351720730	761	NBS-LRR disease-resistance protein scn3r	0.857	0.554	0.287	3e-36
444301787	878	NBS type disease resistance protein [Mal	0.849	0.476	0.301	9e-36
339431373	968	putative CC-NBS-LRR protein [Malus x dom	0.815	0.414	0.318	1e-35
359489148	897	PREDICTED: probable disease resistance R	0.819	0.449	0.307	1e-32
356538242	912	PREDICTED: disease resistance RPP8-like	0.851	0.459	0.304	1e-32
297744820	807	unnamed protein product [Vitis vinifera]	0.823	0.501	0.307	2e-32
147779981	1061	hypothetical protein VITISV_009639 [Viti	0.654	0.303	0.311	8e-32

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 221/454 (48%), Gaps = 35/454 (7%)

Query: 64  LWIAEGFIPDNNE----GTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           LWIAEGF+    E      AE +LE L++R  ++  + +   +I  C I +      +  
Sbjct: 405 LWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKACRIHDLLRDLAMSE 464

Query: 120 ALAGEFIY---SSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHL 176
           A   +F+    S+ ID    +R   +R++ + +L E   L   N +  S+L  S     L
Sbjct: 465 AKECKFLEILDSTNIDTSVTTRA--RRISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESL 522

Query: 177 DPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSIS 236
                + + +  K LRVLDL  +    LP  I  L  LRYL L    L+ LPSS + +  
Sbjct: 523 RRDQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSS-IQNFC 581

Query: 237 NLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYP--RNDCGSLENLNFISALHPR 294
           NL TLD+  + +       W M  LRHL     ++  +P        L+ L+ +S ++  
Sbjct: 582 NLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGN 640

Query: 295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-----------K 343
              PD+LG+L NLRKL IHG  ++    LS+ L KLS+L++L+L                
Sbjct: 641 QWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLN 700

Query: 344 MPRLSKIVL--------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSY 395
            P + K+ L        D  +  P+LT +   N+ L++D    L KLP LQ+LKL  NS+
Sbjct: 701 QPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINSF 760

Query: 396 LGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSV 455
            G+++TC + GFPKL  L L  ++ LEEW +  GAMP L  LIID C  LK++P+    +
Sbjct: 761 FGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHCDQLKKIPEGFQYL 820

Query: 456 KRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
              ++L L     E   ++   K  + Y IQ  P
Sbjct: 821 TALRELFLLNMPDEFEARI---KGDDWYKIQHIP 851

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 220/454 (48%), Gaps = 35/454 (7%)

Query: 64  LWIAEGFIPDNNE----GTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           LWIAEGF+    E      AE +LE L++R  ++  + +   +I  C I +      +  
Sbjct: 451 LWIAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSE 510

Query: 120 ALAGEFIY---SSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHL 176
           A   +F+    S+ ID    +R   +R++ + +L E   L   N +  S+L  S     L
Sbjct: 511 AKECKFLEILDSTNIDTSVTTRA--RRISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESL 568

Query: 177 DPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSIS 236
                + + +  K LRVLDL  +    LP  I  L  LRYL L    L+ LPSS + +  
Sbjct: 569 RREQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSS-VQNFC 627

Query: 237 NLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYP--RNDCGSLENLNFISALHPR 294
           NL TLD+  + +       W M  LRHL     ++  +P        L+ L+ +S ++  
Sbjct: 628 NLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGN 686

Query: 295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-----------K 343
              PD+LG+L NLRKL IHG  ++    LS+ L KLS+L++L+L                
Sbjct: 687 QWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLN 746

Query: 344 MPRLSKIVL--------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSY 395
            P + K+ L        D  +  P+LT +    + L++D    L KLP LQ+LKL  NS+
Sbjct: 747 QPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINSF 806

Query: 396 LGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSV 455
            G+++TC + GFPKL  L L  ++ LEEW +  GAMP L  L+ID C  LK++P+    +
Sbjct: 807 FGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIPEGFQYL 866

Query: 456 KRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
              ++L L     E   ++   K  + Y IQ  P
Sbjct: 867 TALRELFLLNMPDEFEIRI---KGDDWYKIQHIP 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 217/457 (47%), Gaps = 48/457 (10%)

Query: 64  LWIAEGFIPDNN----EGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           LW+AEGF+        E  AE YLE L+ R  ++    K   RI TC + +      + V
Sbjct: 459 LWVAEGFVQPRGQEPLEDVAEDYLEELVGRSMIQVATRKSNGRIKTCCVHDLLHE--LSV 516

Query: 120 ALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPL 179
           +   E  +  +I  E     + +     ++L    + ++ +  + SLLC          L
Sbjct: 517 SKGKEDQFLDIIHGEFTVSSLTRVRRLAIHLGVPPTTKNTS-KVRSLLCFDICEPSFQEL 575

Query: 180 DCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239
                 + FK LR+LDL  + +S+L S I NL  LRYL L    LK LP S +  + NL 
Sbjct: 576 ------RKFKLLRILDLEGVYISRLHSSIGNLIHLRYLGLRGTWLKKLPPS-IQFLLNLQ 628

Query: 240 TLDMPFSYIHHTADVFWEMNKLRHLNFG-LFTLPAYPRNDCGSLENLNFISALHPRCC-- 296
           TLD+  + ++    V W+M KLRHL F  L  +   P  D  SL NL     LH  C   
Sbjct: 629 TLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNPPTD-ASLANLQ---TLHGICINQ 684

Query: 297 ---TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKL--------------- 338
                + L +L NLR+L +HGDL  ++  + K ++    LE LKL               
Sbjct: 685 TSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIP 744

Query: 339 -VNESKMPRLSKI--------VLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLK 389
            +N S  P L K+        + D   FP +LT LS   + LMEDPM  LE L  L+VLK
Sbjct: 745 KLNFSSHPHLIKLHLKGFMAKLFDAEYFPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLK 804

Query: 390 LKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLP 449
           LK ++YLG+++ C   GFP+L  L L  +  +E W +  GAM +L  L I  C  LK +P
Sbjct: 805 LKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVP 864

Query: 450 KQLWSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQ 486
           + L  V    KL+L     E   K+++ + +  Y I+
Sbjct: 865 RGLQPVTTIHKLKLGYMPREFEMKVQERQGENWYKIE 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720730|ref|NP_001237442.1| NBS-LRR disease-resistance protein scn3r1 [Glycine max] gi|212293340|gb|ACJ24527.1| NBS-LRR disease-resistance protein scn3r1 [Glycine max]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 226/452 (50%), Gaps = 30/452 (6%)

Query: 59  EMIYQLWIAEGFIPDNNEGT----------AEKYLEHLINRGFVEAKKIKVGSRINTCSI 108
           + + QLWI+EG +     G+          AE+YL+ L++R  ++         + TC I
Sbjct: 309 KQLIQLWISEGLLTQETCGSSTNIPEPEYIAEEYLDELVDRSLIQVVSRTSDGGVKTCRI 368

Query: 109 PNRWWPALIQVALAGEF--IYSSVIDQESDS--RKMIKRLTANVNLSELDSLEDFNLYLH 164
            +      I  +   +F  +   V  Q  DS  RK+    T     S     +       
Sbjct: 369 HDLLRDLCISESKEDKFFEVCGEVDFQIRDSCPRKLSLHGTLFHFSSSSAVSDYSITGTR 428

Query: 165 SLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSL 224
           SLLC   E + + P     + K F+  RVLDLG + ++ +P+ +E L  LRYL+++  ++
Sbjct: 429 SLLCFGQEVYKVKPNHWRWLLKSFRLARVLDLGRMNVNSIPNDLEKLIHLRYLRIHSYNI 488

Query: 225 KSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRH-LNFGLFTLPAYPRNDCGSLE 283
           +++P+S +  + NL TLD+  S I   +   W++ +LRH L FG   LP  P ++  +++
Sbjct: 489 ETIPAS-ICRLWNLETLDLRGSPIKSFSGDLWQLKQLRHLLMFGPVGLPDMP-SESKTMQ 546

Query: 284 NLNFIS--ALHPRCCTPDILGRLPNLRKLRIHGDLSN--NQSLLSKSLYKLSSLESLKLV 339
           NL  +S  AL PR  +     R P L KL IH +  +  N  +  +SL +LS L  LK++
Sbjct: 547 NLQTLSTVALDPRTTSLLDSRRFPRLTKLGIHHERRDKCNARIQLQSLNRLSHLRKLKVI 606

Query: 340 NESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM-EDPMPTLEKLPLLQVLKLKKNSYLGR 398
             +++P+ + +      FP ++T +S +       + M  L KLP LQVLKL   +   R
Sbjct: 607 GTTEIPQNANV------FPSNITKISLTKFGCFNSNAMHILGKLPSLQVLKLSSQTNDTR 660

Query: 399 -KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKR 457
             L C + GF +L+V  + + + ++ W +  G+MP++  L +  C  L  LPK+LWS+  
Sbjct: 661 FDLHCATGGFLQLQVFEMIA-IKVKNWRLDKGSMPRIRRLDVRSCKSLTELPKELWSLTS 719

Query: 458 FKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
            +++++  P  EL ++L++        + +YP
Sbjct: 720 LREVQVLWPCTELVKRLQNLVVNNGCKLVVYP 751

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444301787|gb|AGD98930.1| NBS type disease resistance protein [Malus x domestica]

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 227/457 (49%), Gaps = 39/457 (8%)

Query: 61  IYQLWIAEGFIP---DNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALI 117
           +++LWIAEG IP      E  AE+YL  LI+R  V+A ++    R+  C + +      I
Sbjct: 428 LFRLWIAEGLIPYYDGRMEDLAEEYLNELIDRNMVQAARLSANDRVKHCRLHDLVRDLCI 487

Query: 118 QVALAGEFIYSSVIDQE------SDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSS 171
             A + EF+Y  +          SDSR     + +  + S   S  +    L SLL    
Sbjct: 488 SKAKSVEFLYIHLKYGIFSPFPCSDSRARHHAIYSGFSSSPYVSTPN----LRSLLFFKV 543

Query: 172 ESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSF 231
           E      +    +C+ FK LRVL+L  + L ++PS I  +  L+YL L   S++SLP   
Sbjct: 544 EQIECG-ISLSDVCRRFKLLRVLELEDMKLRRIPSAIGEMIHLKYLGLRHCSIESLPEE- 601

Query: 232 LSSISNLYTLD-MPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISA 290
           +  +SNL TLD +  + I    DV W+M  LRHL   ++  P   +    +L++L  ++ 
Sbjct: 602 IGWLSNLQTLDILENAKICRVPDVLWKMKSLRHLY--MYVCPFAGKWRIDTLQHLQTLAG 659

Query: 291 LHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLY------------------KLSS 332
           ++           L +LRKLR+ G  + N++ +  SL                    LS+
Sbjct: 660 INIDSLRGINSANLISLRKLRLAGSFATNRAEIFYSLANLLNLHSLSLKSMDSLFPSLSA 719

Query: 333 LESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKK 392
           L SL+ V +  +      + + ++FPP+L  L    + L  +P+  LEKLP L VL+LK 
Sbjct: 720 LSSLRHVIKLHLSGGISKLPNPHEFPPNLNQLILHQSRLENNPLEILEKLPYLFVLRLKH 779

Query: 393 NSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL 452
           +SY G+KL   ++GFP+L+ L L+ +  LEE  +   AMPKL  L I  C  L+ LP+++
Sbjct: 780 SSYRGKKLKFSANGFPQLEYLELEFLDSLEELEVEESAMPKLRSLQITYCQKLRMLPEEI 839

Query: 453 WSVKRFKKLELWRPQPELRQKLRDFKDKEQYNIQLYP 489
            S+   ++L ++   P  R+ +   + ++++ +Q  P
Sbjct: 840 KSLTTLQEL-VFEGMP--RRFIDRLQGEDRHKVQHVP 873

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 219/465 (47%), Gaps = 64/465 (13%)

Query: 61  IYQLWIAEGFIPDNNEG--------TAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRW 112
           + QLWIAEG +  ++E          AE+YL +LINR  V+   +     I TC + +  
Sbjct: 479 LVQLWIAEGIVSPHHEAEGDETIEDVAERYLGYLINRCMVQVGTLGSTGNIKTCRLHDLM 538

Query: 113 WPALIQVALAGEFIY--------------SSVIDQESDSRKMIKRLTANVNLSELDSL-- 156
               +  A    F+               SS +  E+ S    +RL   +  S++D+L  
Sbjct: 539 RDLCLSKAKQENFLQIIHYPDENMVVNSSSSRMLSETTSTGKTRRLAVFLP-SQVDNLIP 597

Query: 157 ----EDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV--LSQLPSGIEN 210
               ED +L L SL+   +    L      +    FK L+VLDL  +     +LP  I +
Sbjct: 598 SKYKEDSHLSLRSLIFFHASKCRLVNWLLTRTIFEFKMLKVLDLEGVKGPYEKLPKDIGD 657

Query: 211 LFFLRYLKLNIPSLKSLPSSFLSSIS----NLYTLD-MPFSYIHHTADVFWEMNKLRHLN 265
           L  L++L L    +++LPSS  + I     NL T+  + +       +V W+M +LRHL 
Sbjct: 658 LVQLQFLSLKKTHIQALPSSIGNLIHLKTLNLQTISKLSWDLTVQIPNVIWKMERLRHLY 717

Query: 266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLL-- 323
              +   A  +   G+L NL  +       C  + L +L NLRKL +  D  + +SL+  
Sbjct: 718 LPKWCGNAVDKLQLGNLINLQTLVNFPANKCDVEDLRKLTNLRKL-VLNDPKHFKSLVII 776

Query: 324 -SKSLYKLSSLESLKLVNES---------------KMPRLSKIVLD-------EY-QFPP 359
            S     LS LESL L +E+                  RL K+ ++       EY QFPP
Sbjct: 777 FSPQSRTLSCLESLSLTSETLSFPDDVVDVRQLMLSCRRLQKLHVEGRIEKLPEYHQFPP 836

Query: 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML 419
           +L  L+   + L EDPMPTLE+LP L++L      + G+K+ C + GFPKLK L L+   
Sbjct: 837 NLAKLTLWGSNLEEDPMPTLERLPNLRILS-GWQMFAGKKMVCSNQGFPKLKSLLLRGFS 895

Query: 420 WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELW 464
            LE+WTM  GAMP L  L I  C  LK +P  L  VK  ++LE++
Sbjct: 896 NLEDWTMEEGAMPSLCRLEISSCIKLKMIPDSLRFVKTLQELEIY 940

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 212/455 (46%), Gaps = 52/455 (11%)

Query: 61  IYQLWIAEGFIPDNN----EGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPAL 116
           + +LW+AEGFI        E  AE +L+ L++R  ++        R+ +C + +      
Sbjct: 430 LIRLWVAEGFIQRRGVEIAEDVAEDHLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLA 489

Query: 117 IQVALAGEFI--YSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSS--E 172
           I  A   +F   Y S+   +S S   ++RLT +            +  L S +C S   +
Sbjct: 490 ISEAKDTKFFEGYESI---DSTSPVSVRRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQ 546

Query: 173 SHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFL 232
            + L  L      +  K L VLDL  + ++ +P GI  L  L+YL L    +K LPSS +
Sbjct: 547 KNSLRSLH-----RRVKLLTVLDLEGMTINTIPEGIGELIHLKYLCLRRTRIKRLPSS-I 600

Query: 233 SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF-GLFTLPAYP---RN---DCGSLENL 285
             ++NL TLD   + I       W+++ LRHL   G+ +  +     RN     G L NL
Sbjct: 601 GRLTNLQTLDFRSTLIEIIPSTIWKLHHLRHLYCRGVVSSQSVIDKFRNGPLSVGHLTNL 660

Query: 286 NFISALHPRCCTPDILGRLPNLRKLRI---HGDLSNNQSLLSKSLYKLSSLESLKLVNES 342
             +       C  + LG+L  LR+L I       + NQ   S+S+ KL++L+SL+L    
Sbjct: 661 QSLCLRAGSWCCGEGLGKLIELRELTIVWTEIAQTKNQGF-SESVKKLTALQSLRLYTLG 719

Query: 343 K--------MP--------------RLSKIVLDEYQF-PPSLTHLSFSNTELMEDPMPTL 379
           +        MP              RL +   DE +F PP+L  L        ++PM TL
Sbjct: 720 EEMLTMPHLMPFSDHTYLYHLSLNGRLERFP-DEIEFYPPNLISLELRYRNAEQNPMVTL 778

Query: 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLII 439
           EKLP L+ L+L   S + +K+ C S GF +L+ L L  +  LEE     GAMP L+ L+I
Sbjct: 779 EKLPNLRFLRLSLCSSMLKKMVCTSGGFQQLETLRLWGLKELEELIAEEGAMPDLKDLVI 838

Query: 440 DPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKL 474
           D C  +KRL   L   K  + L+L+   PEL  +L
Sbjct: 839 DACPKMKRLSHGLLQRKNLQHLKLYDLSPELMDEL 873

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538242|ref|XP_003537613.1| PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max]

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 225/466 (48%), Gaps = 47/466 (10%)

Query: 51  VNIIVEEEEMIYQLWIAEGFI----PDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTC 106
           VNI   + + + +LW+AEGF+     +  EG A+KYL  LI R  ++   +    R+ T 
Sbjct: 430 VNI---QTKKLIRLWVAEGFLLQEGEETAEGVAQKYLNELIGRCMIQVGTVSSLGRVKTI 486

Query: 107 SIPNRWWPALIQVALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSL 166
            I +      +     G F+     D    S K  +R + +      DSL+  + +  SL
Sbjct: 487 RIHHLLRDLSLSKGKEGYFLKIYQGDVAGPSTKA-RRHSMHFCHDRYDSLKHNSDHSRSL 545

Query: 167 LCLSSESHHLD-------PLDCEK------ICKMFKFLRVLDLGSLVLSQLPSGIENLFF 213
           L  + E ++ D       PL+ ++      I + FK LRVL+L  + +  LPS I NL  
Sbjct: 546 LFFNRE-YNADIVRKLWLPLNLQQEKKLNFIFRKFKLLRVLELDGVRVVSLPSTIGNLIQ 604

Query: 214 LRYLKLNIPSLKS-LPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLN-FGLFT 270
           LRYL L   +L+  LP S + ++ NL TLD+ +  ++    ++ W+M  LRHL  +  F 
Sbjct: 605 LRYLGLRKTNLEEELPPS-IGNLQNLQTLDLRYCCFLKKIPNIIWKMVNLRHLLLYTPFD 663

Query: 271 LPAYPRNDCGSLENLNFISALHPRCCTPDI-LGRLPNLRKLRI---HGDLSNNQSLLSKS 326
            P        +L NL  +  +       D  L  + NLR+L I    G + N+     + 
Sbjct: 664 SPDSSHLRLDTLTNLQTLPHIEAGNWIGDGGLANMINLRQLGICELSGQMVNSVLSTVQG 723

Query: 327 LYKLSSLESLKLVNESKMP---------RLSKIVL--------DEYQFPPSLTHLSFSNT 369
           L+ L SL       E + P          L K+ L        D ++FPP+L  L+  N+
Sbjct: 724 LHNLHSLSLSLQSEEDEFPIFMQLSQCTHLQKLSLNGKIKKLPDPHEFPPNLLKLTLHNS 783

Query: 370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTG 429
            L ++ +  LE+LP L++L L K +Y   +L   + GFP+L +L L  +  LEEWT+   
Sbjct: 784 HLRKESIAKLERLPNLKMLILGKGAYNWPELNFNAEGFPQLHILRLVLLKELEEWTVEES 843

Query: 430 AMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLR 475
           AMP+LE ++ID C  LK++P+ L ++   KKL++     E   KLR
Sbjct: 844 AMPRLENMVIDRCEKLKKIPEGLKAITSLKKLKIIGMPVEFEHKLR 889

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744820|emb|CBI38088.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 218/456 (47%), Gaps = 51/456 (11%)

Query: 59  EMIYQLWIAEGFIPDNNE----GTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWP 114
           E + +LW+AEGFI    E      AE +L+ L++R  ++        R+ +C + +    
Sbjct: 315 EKLIRLWVAEGFIQRRGEEIAEDIAEDHLQELVHRSMIQVADKSFDGRVMSCRMHDLLRD 374

Query: 115 ALIQVALAGEFI--YSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSS- 171
             I  A   +F   Y S+   +S S   ++RLT +            +  L S +C S  
Sbjct: 375 LAISEAKDTKFFEGYESI---DSTSPVSVRRLTIHQGKKTNSKHLHTSRSLRSFICFSVC 431

Query: 172 -ESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSS 230
            + + L  L      +  K L VLDL  + ++ +P GI  L  L+YL L    +K LPSS
Sbjct: 432 FQKNILRSLH-----RRVKLLTVLDLEGMTINTIPEGIGELIHLKYLCLKRTRIKRLPSS 486

Query: 231 FLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLN-FGLFTLPAY---PRNDCGSLENLN 286
            +  ++NL TLD   + I       W+++ LR+L+  GL +  +     RN   S+++L 
Sbjct: 487 -IGRLTNLQTLDFRSTSIEIIPSTIWKLHHLRYLHGHGLVSSQSVIDKCRNGPLSVDHLT 545

Query: 287 FISALHPRC---CTPDILGRLPNLRKLRIHGD---LSNNQSLLSKSLYKLSSLESLKL-- 338
            + +L  R    C  + LG+L  LR+L +       + NQ   S+S+ KL++L+SL L  
Sbjct: 546 NLQSLGLRAGSWCCGEGLGKLTELRELTVAWTEIAQTKNQGF-SESVKKLTALQSLCLCP 604

Query: 339 -VNESKMP------------------RLSKIVLDEYQF-PPSLTHLSFSNTELMEDPMPT 378
            V    MP                  RL +   DE +F PP+L  L      + +DPM T
Sbjct: 605 TVERVNMPHLMPFSDHTYLYHLNLRGRLERFP-DEIEFYPPNLISLELQCWNIEQDPMVT 663

Query: 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLI 438
           L KLP L+ L L   S + +K+ C S GF +L+ L L +   L+E  +  GAMP L+ L+
Sbjct: 664 LGKLPNLRFLILFHCSSMVKKMVCTSGGFQQLETLQLWNFKELKELIVEEGAMPDLKDLV 723

Query: 439 IDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKL 474
           ID C  +KRL   L   K  + L+L+   P+LR +L
Sbjct: 724 IDTCPKMKRLSHGLLQRKNLQHLKLYDLSPKLRDEL 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779981|emb|CAN75534.1| hypothetical protein VITISV_009639 [Vitis vinifera]

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 70/392 (17%)

Query: 64  LWIAEGFIPDNNE----GTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119
           LW AEGF+P+ NE      AE YL  LINR  ++  ++ V +R+  C + +  +      
Sbjct: 86  LWTAEGFVPEQNERRMKDMAEVYLNELINRNLIQVVRMSVNARVTKCRVHDLRYA----- 140

Query: 120 ALAGEFIYSSVIDQESDSRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLS-SESHHLDP 178
                                              S+E    YL +LL  +  ++     
Sbjct: 141 -----------------------------------SIEHLTPYLRTLLFFNLGKNCRASQ 165

Query: 179 LDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238
           LD   I K FK LRVLDL  L +  LPS I  L  LRYL L    LK LP S + ++ +L
Sbjct: 166 LDF--IAKCFKVLRVLDLEGLEIECLPSIIGELIHLRYLGLRHNGLKMLPPS-IGNLKSL 222

Query: 239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTP 298
            TLD+  + +    +V W+M  +R+L           + D  +L+NL  +S +       
Sbjct: 223 QTLDI--NNLKEVPNVIWKMKNMRYLYIEGQEEDVPLQID--TLQNLEILSCITFNQWIK 278

Query: 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL--KLVNESKMP--------RLS 348
           +    L  L KL++ G       + S S+ KL SL+SL  K  +ES +P         LS
Sbjct: 279 NDSSNLTCLEKLKLEGRCEVEGVVFSNSIAKLPSLKSLYLKASDESNIPPLAINSCLHLS 338

Query: 349 KIVL--------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKL 400
           K+ +        +  +F P+LT L+   + L  DPMP LEK P L +L+L+ N+YLG+K+
Sbjct: 339 KLDIKGHMQKLPETVEFSPNLTQLTMEASRLGCDPMPILEKQPKLLILRLRANTYLGKKM 398

Query: 401 TCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMP 432
              ++GFP+LK+L L  +  L +  +G GA+P
Sbjct: 399 QVSANGFPQLKILQLSELKELTKLNIGQGALP 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.282	0.154	0.328	3.3e-20
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.288	0.156	0.347	5.8e-19
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.288	0.156	0.333	1.3e-18
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.603	0.327	0.267	2.8e-17
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.595	0.323	0.285	3e-15
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.280	0.153	0.333	1.9e-12
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.211	0.102	0.370	1.5e-11
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.211	0.102	0.370	1.5e-11
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.211	0.099	0.370	1.7e-11
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.211	0.099	0.370	1.7e-11

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 47/143 (32%), Positives = 72/143 (50%)

Query:   347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCGSHG 406
             LSKI  D++Q PP + H+      + EDPMP                +++GR++ C   G
Sbjct:   750 LSKIP-DQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGG 808

Query:   407 FPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRP 466
             FP+L+ L +     LEEW +  G+MP L  LII  C  L+ LP  L  V   K+L++   
Sbjct:   809 FPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGM 868

Query:   467 QPELRQKLRDFKDKEQYNIQLYP 489
             + E ++KL     ++ Y +Q  P
Sbjct:   869 KREWKEKL---VGEDYYKVQHIP 888

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 50/144 (34%), Positives = 73/144 (50%)

Query:   346 RLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCGSH 405
             R+SKI  D++QFPP L HL      + EDPMP                ++LG ++ C   
Sbjct:   758 RMSKIP-DQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKG 816

Query:   406 GFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWR 465
             GFP+L V+ +     LEEW +  G+MP L  L ID C  LK LP  L  +   K+L++  
Sbjct:   817 GFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEG 876

Query:   466 PQPELRQKLRDFKDKEQYNIQLYP 489
              + E ++KL     ++ Y +Q  P
Sbjct:   877 MKREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
 Identities = 48/144 (33%), Positives = 73/144 (50%)

Query:   346 RLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCGSH 405
             R+SKI  D++QFPP L H+   +  + EDPMP                +++GR++ C   
Sbjct:   758 RMSKIP-DQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKG 816

Query:   406 GFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWR 465
             GFP+L  L +     LEEW +  G+MP L  L I  C  LK LP  L  +   K+L++  
Sbjct:   817 GFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIRE 876

Query:   466 PQPELRQKLRDFKDKEQYNIQLYP 489
              + E ++KL     ++ Y +Q  P
Sbjct:   877 MKREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 83/310 (26%), Positives = 126/310 (40%)

Query:   191 LRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPXXXXXXXXXXXXXXXXY-TLDMPFSY 247
             LRVLDL        +LPS I  L  L+YL L                   Y  L +    
Sbjct:   575 LRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQ 634

Query:   248 IHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL 307
             + +  +VF EM +LR+L+   +   +  + + G+L  L  +     +  +   L R+  L
Sbjct:   635 LINVPNVFKEMLELRYLSLP-WERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKL 693

Query:   308 RKLRI--HGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXM----PRLS-KIVLDEYQ-FPP 359
             R L+I   G+                            +    P+L  + +L + Q FP 
Sbjct:   694 RTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPS 753

Query:   360 SLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCGSHGFPKLKVLHLKSML 419
              LT +S     L EDPMPT              N+Y+GR++ C   GFP L  L +  + 
Sbjct:   754 HLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLD 813

Query:   420 WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQPELRQKLRDFKD 479
              LEEW +  G+MP L  L I  C  LK +P  L  +   K+L + R   ++ QK      
Sbjct:   814 ALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI-RTNEKVFQKKVSKGG 872

Query:   480 KEQYNIQLYP 489
             ++ Y +Q  P
Sbjct:   873 EDYYKMQHVP 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
 Identities = 92/322 (28%), Positives = 120/322 (37%)

Query:   189 KFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPXXXXXXXXXXXXXXXXY-TLDMPF 245
             K LRVLDL  +     +LP GI NL  LRYL L                   Y  LD+  
Sbjct:   584 KLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDT 643

Query:   246 SYIHHTADVFWEMNKLRHLNFGLFT--LPAYPRNDCGSLENLNFISALHPRCCTPDILG- 302
              +I    DVF  M++LR+L   L           +   LE L + S  H    + D+ G 
Sbjct:   644 EFIF-VPDVFMRMHELRYLKLPLHMHKKTRLSLRNLVKLETLVYFSTWHSS--SKDLCGM 700

Query:   303 -RLPNL--RKLRIHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXX------MPRLSKIVLD 353
              RL  L  R  R+                                        L  ++LD
Sbjct:   701 TRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLD 760

Query:   354 EYQ-----FPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCGSHGFP 408
              Y      FP  LT +  S   L EDPMP                SY GR++ C   GFP
Sbjct:   761 LYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFP 820

Query:   409 KLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRF-KKLELWRPQ 467
             +LK L +  +   EEW +  G+MP LE L I  C  LK +P  L    RF   LEL    
Sbjct:   821 QLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGL----RFIYSLELVMLG 876

Query:   468 PELRQKLRDFKDKEQYNIQLYP 489
                ++K      ++ Y +Q  P
Sbjct:   877 TRWKKKF-SVGGEDYYKVQHIP 897

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
 Identities = 49/147 (33%), Positives = 66/147 (44%)

Query:   344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCG 403
             MPRL KI       P  LT L  S   L EDPMP                S+ GRK+ C 
Sbjct:   757 MPRLPKI----QHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCS 812

Query:   404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLEL 463
             + GFP+L+ L L      EEW +  G+M +L  L I     LK LP  L  +   K L +
Sbjct:   813 AGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSST-LKELPDGLRFIYSLKNLIM 871

Query:   464 WRPQPELRQKLRDFKDKEQYNIQLYPY 490
              +   E   +L + + +E Y +Q  P+
Sbjct:   872 GKSWME---RLSE-RGEEFYKVQNIPF 894

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
 Identities = 40/108 (37%), Positives = 52/108 (48%)

Query:   344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCG 403
             MPRLS     E  FP  LT L   +  L EDPMP                S+ G+K+ C 
Sbjct:   758 MPRLST----EQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813

Query:   404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ 451
             S GFP+L+ L L  +   E+W +   +MP L  L I  C  LK+LP +
Sbjct:   814 SGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
 Identities = 40/108 (37%), Positives = 52/108 (48%)

Query:   344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCG 403
             MPRLS     E  FP  LT L   +  L EDPMP                S+ G+K+ C 
Sbjct:   758 MPRLST----EQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813

Query:   404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ 451
             S GFP+L+ L L  +   E+W +   +MP L  L I  C  LK+LP +
Sbjct:   814 SGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
 Identities = 40/108 (37%), Positives = 54/108 (50%)

Query:   344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCG 403
             MPRLSK    E  FP  LT L   +  L EDPMP                S+ G+++ C 
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ 451
             S GFP+L+ L +K +   E+W +   +MP L  L I  C  LK+LP +
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
 Identities = 40/108 (37%), Positives = 54/108 (50%)

Query:   344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTXXXXXXXXXXXXXXNSYLGRKLTCG 403
             MPRLSK    E  FP  LT L   +  L EDPMP                S+ G+++ C 
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ 451
             S GFP+L+ L +K +   E+W +   +MP L  L I  C  LK+LP +
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.86
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.68
KOG4341	483	consensus F-box protein containing LRR [General fu	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.64
PLN03150	623	hypothetical protein; Provisional	98.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
PLN03150	623	hypothetical protein; Provisional	98.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.53
smart00370	26	LRR Leucine-rich repeats, outliers.	93.53
KOG4308	478	consensus LRR-containing protein [Function unknown	91.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.05
smart00370	26	LRR Leucine-rich repeats, outliers.	89.05
KOG4308	478	consensus LRR-containing protein [Function unknown	83.99

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-42  Score=364.53  Aligned_cols=400  Identities=27%  Similarity=0.326  Sum_probs=279.7

Q ss_pred             hHHHHHHhhcccCChhhHHHHHhhhcccch-------------------------HHHHHHHHhhhccccccccc-----
Q 045751            3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-------------------------EIVTSLLRDYECEIAGHLVN-----   52 (492)
Q Consensus         3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-------------------------~i~~~l~~sy~~~l~~~~k~-----   52 (492)
                      -|.+||+||++|+|||||+++||+.|+.|.                         .+++.+++||+. +|+++|.     
T Consensus       341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~-L~~~lK~CFLyc  419 (889)
T KOG4658|consen  341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN-LPEELKSCFLYC  419 (889)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh-hhHHHHHHHHhh
Confidence            489999999999999999999999999975                         478999999995 7877774     


Q ss_pred             -----ceeecHHHHHHHHHHhCCCC--C-C--hHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhh-
Q 045751           53 -----IIVEEEEMIYQLWIAEGFIP--D-N--NEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVAL-  121 (492)
Q Consensus        53 -----~~~~~~~~Li~~wia~gf~~--~-~--~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~-  121 (492)
                           +|+|++++||.+|+||||+.  + +  +++.|++|+++||.+|+++.....  +....|+|||++|++|.++++ 
T Consensus       420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~  497 (889)
T KOG4658|consen  420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASD  497 (889)
T ss_pred             ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhcc
Confidence                 46899999999999999997  3 3  899999999999999999998754  666799999999999999998 


Q ss_pred             ----ccCceEEccc-----CCCCCCCCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcE
Q 045751          122 ----AGEFIYSSVI-----DQESDSRKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFL  191 (492)
Q Consensus       122 ----~~~~~~~~~~-----~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L  191 (492)
                          +++.+. ..+     ......+..+|++++.++.+..+. ... +++|+||.+.++...  .......+|..++.|
T Consensus       498 ~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~L  573 (889)
T KOG4658|consen  498 FGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLL  573 (889)
T ss_pred             ccccccceEE-ECCcCccccccccchhheeEEEEeccchhhcc-CCCCCCccceEEEeecchh--hhhcCHHHHhhCcce
Confidence                666444 222     122335678999999966666665 455 889999999998620  124677889999999


Q ss_pred             EEEEecCCc-CCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhccccccccccccc
Q 045751          192 RVLDLGSLV-LSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       192 ~~L~L~~~~-l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      ++|||++|. +..+|.+|+.|-+||||+++++.+..+|.++ +++.+|.+|++..+ .+..+|.....+++|++|.+...
T Consensus       574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             EEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            999999876 7799999999999999999999999999999 99999999999998 45555666667999999988544


Q ss_pred             c--cCCCCCccccCCcccceeecCCC-CccchhhhCCCcccc----eEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC
Q 045751          270 T--LPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLR----KLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES  342 (492)
Q Consensus       270 ~--~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  342 (492)
                      .  .....-..+.++++|+.+.+... ...... +..++.|+    .+.+.++   .....+.++..+.+|+.|.+..  
T Consensus       653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~--  726 (889)
T KOG4658|consen  653 ALSNDKLLLKELENLEHLENLSITISSVLLLED-LLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILD--  726 (889)
T ss_pred             ccccchhhHHhhhcccchhhheeecchhHhHhh-hhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEc--
Confidence            3  11222233344666666655431 112222 33344333    2222222   3334445566666777776664  


Q ss_pred             CCCCc-------------------cEEEe---------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751          343 KMPRL-------------------SKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS  394 (492)
Q Consensus       343 ~~~~L-------------------~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~  394 (492)
                       |...                   ..+..         ....+|++|+.|.+..|.....+.+....+..+..+.+..+.
T Consensus       727 -~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~  805 (889)
T KOG4658|consen  727 -CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK  805 (889)
T ss_pred             -CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence             1111                   11100         111233667777777666555555555555555544444444


Q ss_pred             cCCCcccccCCCCccccEEeecc
Q 045751          395 YLGRKLTCGSHGFPKLKVLHLKS  417 (492)
Q Consensus       395 ~~~~~~~~~~~~~~~L~~L~l~~  417 (492)
                      +.+..+....++|+++..+.+..
T Consensus       806 ~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  806 LEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             cccceeeecCCCCceeEecccCc
Confidence            43332233344444444444443

>PLN03210 Resistant to P

Probab=100.00  E-value=8.8e-37  Score=339.50  Aligned_cols=439  Identities=16%  Similarity=0.160  Sum_probs=276.0

Q ss_pred             hHHHHHHhhcccCChhhHHHHHhhhcccch-----------------HHHHHHHHhhhccccc-cccccee-------ec
Q 045751            3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-----------------EIVTSLLRDYECEIAG-HLVNIIV-------EE   57 (492)
Q Consensus         3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-----------------~i~~~l~~sy~~~l~~-~~k~~~~-------~~   57 (492)
                      +++++++||++|+|+|||++++|+.|+++.                 +|..++++||+. ++. ..|.+|.       -.
T Consensus       374 ~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~-L~~~~~k~~Fl~ia~ff~~~  452 (1153)
T PLN03210        374 FMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDG-LNNKKDKAIFRHIACLFNGE  452 (1153)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhc-cCccchhhhhheehhhcCCC
Confidence            468999999999999999999999999864                 478899999995 765 4666652       12


Q ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhhccCce-----EEcccC
Q 045751           58 EEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFI-----YSSVID  132 (492)
Q Consensus        58 ~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~~~~~~-----~~~~~~  132 (492)
                      ..+.|..|+|.+...      ++..++.|+++||++...       ..+.|||++++||+++++++...     . .++.
T Consensus       453 ~~~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~-l~~~  518 (1153)
T PLN03210        453 KVNDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREF-LVDA  518 (1153)
T ss_pred             CHHHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCccee-EeCH
Confidence            223455666665443      233488999999998753       25899999999999998765310     0 1111


Q ss_pred             -------CCCCCCCCeeEEEEecCCCCc--cccccc--CCCeeEEEeecCCCCC--CCchhHHHHhccC-CcEEEEEecC
Q 045751          133 -------QESDSRKMIKRLTANVNLSEL--DSLEDF--NLYLHSLLCLSSESHH--LDPLDCEKICKMF-KFLRVLDLGS  198 (492)
Q Consensus       133 -------~~~~~~~~~r~lsl~~~~~~~--~~~~~~--~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~-~~L~~L~L~~  198 (492)
                             .......+++.+++....+.+  +...+|  +++|+.|.+..+....  ......+..+..+ +.|+.|++.+
T Consensus       519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~  598 (1153)
T PLN03210        519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK  598 (1153)
T ss_pred             HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence                   011233567777776444332  223345  7888888886553210  0001122333343 3577777777


Q ss_pred             CcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccccccccccccccCCCCCc
Q 045751          199 LVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTLPAYPRN  277 (492)
Q Consensus       199 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~  277 (492)
                      +.++.+|..+ ...+|+.|+++++.+..+|..+ ..+++|+.|++++| .++.+|. ++.+++|+.|++++|.....+|.
T Consensus       599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             CCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence            7777777665 3567777777777777777776 77777777777766 4566664 66677777777777766667777


Q ss_pred             cccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC--------CCCCc
Q 045751          278 DCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES--------KMPRL  347 (492)
Q Consensus       278 ~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L  347 (492)
                      .++++++|+.|++++  ....++. ..++++|+.|++++|  .....+|..   .++|+.|+++++.        .+++|
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc--~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L  749 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGC--SRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENL  749 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCC--CCccccccc---cCCcCeeecCCCcccccccccccccc
Confidence            777777777777763  1222222 225667777777766  233333321   2345555555421        12233


Q ss_pred             cEEEee-----------------cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751          348 SKIVLD-----------------EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL  410 (492)
Q Consensus       348 ~~L~l~-----------------~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  410 (492)
                      +.|.+.                 ...+|++|+.|++++|......|..++++++|+.|++++|..... ++.. ..+++|
T Consensus       750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL  827 (1153)
T PLN03210        750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTG-INLESL  827 (1153)
T ss_pred             ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCC-CCcccc
Confidence            333220                 011125666666666665555666666666666666665532221 1111 134444


Q ss_pred             cEEeecccC--------------------CcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          411 KVLHLKSML--------------------WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       411 ~~L~l~~~~--------------------~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +.|++++|.                    .++.+|..++.+++|+.|++.+|+.+..+|..+..+++|+.+++++|+
T Consensus       828 ~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        828 ESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            444444443                    445566667788999999999999999999888899999999999997

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=2.4e-28  Score=271.53  Aligned_cols=318  Identities=19%  Similarity=0.196  Sum_probs=175.1

Q ss_pred             CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccC
Q 045751          139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLR  215 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~  215 (492)
                      .+++.+.+..+.+....+..+  +++|++|++++|...   ...+...+..+++|++|++++|.++ .+|.  +.+++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence            467777777555554444444  777777777777653   1244445556677777777766655 3332  3455666


Q ss_pred             EEEccCCCCc-cCchhHHhcCCCccEEecCCCcc-cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-
Q 045751          216 YLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYI-HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-  292 (492)
Q Consensus       216 ~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l-~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-  292 (492)
                      +|++++|.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.+++++ 
T Consensus       144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            6666666655 555555 6666666666666644 34555566666666666666665555566666666666665553 


Q ss_pred             --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe--------
Q 045751          293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL--------  352 (492)
Q Consensus       293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l--------  352 (492)
                        ....+.. ++.+++|++|++++|  ...+.+|..++++++|+.|+++++.          .+++|+.|++        
T Consensus       223 ~l~~~~p~~-l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        223 NLSGEIPYE-IGGLTSLNHLDLVYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             ccCCcCChh-HhcCCCCCEEECcCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence              1122333 555555666665555  3444455555555555555555411          2334444444        


Q ss_pred             ---ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecc------------
Q 045751          353 ---DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------------  417 (492)
Q Consensus       353 ---~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------------  417 (492)
                         ++.++ ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..++.+++|+.|++++            
T Consensus       300 ~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        300 IPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             CChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence               23344 45555555555555445555555555555555555544322 23334444444444444            


Q ss_pred             ------------cCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          418 ------------MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       418 ------------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                                  |.....+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|.
T Consensus       378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence                        42222344445566666666666666665666666667777777776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=2.2e-28  Score=271.84  Aligned_cols=297  Identities=22%  Similarity=0.254  Sum_probs=148.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISN  237 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~  237 (492)
                      .++|++|++++|...    ...+..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++++
T Consensus       139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~  213 (968)
T PLN00113        139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKS  213 (968)
T ss_pred             cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCC
Confidence            445555555555443    123344555566666666665554 55555555666666666655555 455555 55566


Q ss_pred             ccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC---CccchhhhCCCcccceEEee
Q 045751          238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP---RCCTPDILGRLPNLRKLRIH  313 (492)
Q Consensus       238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~  313 (492)
                      |++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|+.|++++.   ...+.. +..+++|+.|+++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls  292 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLS  292 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECc
Confidence            666666555443 45555555556666666555555555555555555555555431   122223 5555555555555


Q ss_pred             eccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCC
Q 045751          314 GDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELM  372 (492)
Q Consensus       314 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~  372 (492)
                      +|  .....+|..+.++++|+.|+++++.          .+++|+.|.+           +++.+ ++|+.|++++|.+.
T Consensus       293 ~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~  369 (968)
T PLN00113        293 DN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLT  369 (968)
T ss_pred             CC--eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeE
Confidence            55  3334445555555555555554411          2334444443           12233 44444555444444


Q ss_pred             CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751          373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL  452 (492)
Q Consensus       373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l  452 (492)
                      +..+..+..+++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  448 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK  448 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccC-CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence            444444444444444444444433322 2334455566666666653322444445555555555555555444444444


Q ss_pred             cCCCCCcEEEecCC
Q 045751          453 WSVKRFKKLELWRP  466 (492)
Q Consensus       453 ~~l~~L~~L~l~~c  466 (492)
                      ..+++|+.|++++|
T Consensus       449 ~~l~~L~~L~L~~n  462 (968)
T PLN00113        449 WDMPSLQMLSLARN  462 (968)
T ss_pred             ccCCCCcEEECcCc
Confidence            44555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=8.5e-30  Score=246.61  Aligned_cols=315  Identities=20%  Similarity=0.238  Sum_probs=275.1

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY  216 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~  216 (492)
                      ..++.|+++.+|....+.-+.. .|.||++++..|...   ..-.+..+-++..|.+|||+.|.++..|..+..-+++-.
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV  130 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence            3577888888777776664444 999999999999886   344566677899999999999999999999999999999


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC----
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH----  292 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~----  292 (492)
                      |+|++|+|..+|..+|-++..|-+||||+|.+..+|+.+..+.+|++|+|++|.+.-.--..+..+++|..|.+++    
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence            9999999999999999999999999999999999999999999999999999987543334445578888888875    


Q ss_pred             CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751          293 PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM  372 (492)
Q Consensus       293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~  372 (492)
                      ...+++. +..+.+|+.++++.|   ....+|..+.++++|+.|++++    ..+++|.+..+.- .+|++|+++.|++ 
T Consensus       211 l~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~----N~iteL~~~~~~W-~~lEtLNlSrNQL-  280 (1255)
T KOG0444|consen  211 LDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG----NKITELNMTEGEW-ENLETLNLSRNQL-  280 (1255)
T ss_pred             hhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc----CceeeeeccHHHH-hhhhhhccccchh-
Confidence            2344555 889999999999997   7778899999999999999984    6788888767777 8999999999997 


Q ss_pred             CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751          373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL  452 (492)
Q Consensus       373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l  452 (492)
                      ...|..+.+++.|+.|.+.+|.++-+.++..++.+.+|+.+..++| .++-+|.+++.|++|+.|.++.|..+ .+|+.+
T Consensus       281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhh
Confidence            5678889999999999999999988888999999999999999997 89999999999999999999988755 799999


Q ss_pred             cCCCCCcEEEecCCC
Q 045751          453 WSVKRFKKLELWRPQ  467 (492)
Q Consensus       453 ~~l~~L~~L~l~~c~  467 (492)
                      .-++.|+.|++..+|
T Consensus       359 HlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  359 HLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhcCCcceeeccCCc
Confidence            999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=6.8e-26  Score=218.18  Aligned_cols=299  Identities=19%  Similarity=0.190  Sum_probs=209.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      .+..++|++++|.+.    .+...+|.++++|+.+++..|.++.+|......-||+.|+|.+|.|.++..+-...++.|+
T Consensus        77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            788899999999886    4667888999999999999999999998777777899999999999877665447888899


Q ss_pred             EEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeecc
Q 045751          240 TLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDL  316 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~  316 (492)
                      .|||+.|.+..+|.. +..-.++++|+|++|.++..-...+.++.+|..+.+++  ....+...|.++++|+.|++..|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            999999988888743 55557888999998888766666677788888888874  455566657888888888888874


Q ss_pred             CcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCC
Q 045751          317 SNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       317 ~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                        ....--..|..+++|+.|.+..++          .+.+++.|++           |+-++ ..|+.|++++|.+....
T Consensus       233 --irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  233 --IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             --eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheee
Confidence              221113456667777777665532          5556666665           44455 55555555555554444


Q ss_pred             cccccCCCccCeEEEeccccCCCc-----------------------ccccCCCCccccEEeecccCCcc-eEE---Ecc
Q 045751          376 MPTLEKLPLLQVLKLKKNSYLGRK-----------------------LTCGSHGFPKLKVLHLKSMLWLE-EWT---MGT  428 (492)
Q Consensus       376 ~~~l~~l~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~-~l~---~~~  428 (492)
                      +..+.-+++|+.|+|+.|+++...                       -...+.++.+|++|+|+.| .+. .+.   ..+
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAF  388 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhh
Confidence            444444555555555554443211                       1233456677888888776 443 221   235


Q ss_pred             CccccccEEEEeecCCcCccc-hhccCCCCCcEEEecCCC
Q 045751          429 GAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       429 ~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~  467 (492)
                      ..+++|+.|.+.+|. ++.+| ..+..+++|++|++.+++
T Consensus       389 ~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence            568899999998886 55565 477888999999998886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-26  Score=221.69  Aligned_cols=316  Identities=18%  Similarity=0.159  Sum_probs=246.6

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~  213 (492)
                      ..+.+.++.+.+|.+..+..+..  .+.||+|+++.|.+.    ++....|..-.+++.|+|++|.|+.+. ..|..+.+
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            34568888888788888776666  889999999988876    366667777788999999999988664 66788888


Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH  292 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~  292 (492)
                      |..|.|+.|+++.+|.-.|.++++|+.|+|..|.+... .-.|..+++|+.|.|..|.+..---..+..+.+++.+++..
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence            99999999999999988888899999999998877665 34588889999999988887543333344488888888863


Q ss_pred             --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecc
Q 045751          293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNT  369 (492)
Q Consensus       293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~  369 (492)
                        ....-..++-+++.|+.|+++.|  .....-++++..+++|+.|+|+    ..+++.|+- .+..+ ..|++|.|++|
T Consensus       279 N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs----~N~i~~l~~~sf~~L-~~Le~LnLs~N  351 (873)
T KOG4194|consen  279 NRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLS----SNRITRLDEGSFRVL-SQLEELNLSHN  351 (873)
T ss_pred             chhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEecc----ccccccCChhHHHHH-HHhhhhccccc
Confidence              22223334778889999999998  5666667788888899999998    455555544 45566 88999999999


Q ss_pred             cCCCCCcccccCCCccCeEEEeccccCCCc--ccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcC
Q 045751          370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRK--LTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLK  446 (492)
Q Consensus       370 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~  446 (492)
                      .++......|..+.+|++|+|.+|.+....  -...+.++++|+.|.+.+| +++.+|. .+..+++|+.|++.+|+..+
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCccee
Confidence            987766677889999999999988765322  1233567999999999998 8888875 47899999999999999887


Q ss_pred             ccchhccCCCCCcEEEecC
Q 045751          447 RLPKQLWSVKRFKKLELWR  465 (492)
Q Consensus       447 ~lp~~l~~l~~L~~L~l~~  465 (492)
                      .-|..+..+ .|++|.+..
T Consensus       431 Iq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  431 IQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ecccccccc-hhhhhhhcc
Confidence            778888888 888887643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=3.4e-27  Score=228.64  Aligned_cols=311  Identities=19%  Similarity=0.176  Sum_probs=262.6

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC--CCchhhcccccc
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS--QLPSGIENLFFL  214 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L  214 (492)
                      .++++.+.+.-.....++.+.. +.+|+.|.+.+|...     .....++.++.||.+++..|+++  .+|..+..+..|
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL  105 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL  105 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence            4577888887556667775555 999999999999876     56678889999999999999987  889999999999


Q ss_pred             CEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCC
Q 045751          215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP  293 (492)
Q Consensus       215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~  293 (492)
                      ..|||++|++.+.|..+ ..-+++-.|+||+|+|..+|.. +-+++-|-.||||+|.+ ..+|+.+..|..|+.|.++++
T Consensus       106 t~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCC
Confidence            99999999999999999 9999999999999999999976 67899999999999998 689999999999999999863


Q ss_pred             ---CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEeccc
Q 045751          294 ---RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTE  370 (492)
Q Consensus       294 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~  370 (492)
                         ..-+.. +..+++|+.|.+++.+ .....+|.++..+.+|..++++    +.+|..++-.+-++ ++|+.|+|++|.
T Consensus       184 PL~hfQLrQ-LPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS----~N~Lp~vPecly~l-~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  184 PLNHFQLRQ-LPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS----ENNLPIVPECLYKL-RNLRRLNLSGNK  256 (1255)
T ss_pred             hhhHHHHhc-Cccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc----ccCCCcchHHHhhh-hhhheeccCcCc
Confidence               223334 5667778888888764 6778899999999999999998    56666554456677 899999999999


Q ss_pred             CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcCcc
Q 045751          371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLKRL  448 (492)
Q Consensus       371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l  448 (492)
                      ++.. -...+.+.+|++|+++.|+++.  ++.....+++|+.|.+.+| .++  .+|.++|.+..|+.+...+|. +.-+
T Consensus       257 iteL-~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElV  331 (1255)
T KOG0444|consen  257 ITEL-NMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELV  331 (1255)
T ss_pred             eeee-eccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccC
Confidence            8543 3356778999999999999875  4666788999999999987 444  899999999999999998774 7789


Q ss_pred             chhccCCCCCcEEEecCCC
Q 045751          449 PKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       449 p~~l~~l~~L~~L~l~~c~  467 (492)
                      |+++.+|+.|+.|.++.+.
T Consensus       332 PEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  332 PEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             chhhhhhHHHHHhcccccc
Confidence            9999999999999998764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=4.2e-25  Score=204.05  Aligned_cols=181  Identities=21%  Similarity=0.162  Sum_probs=90.9

Q ss_pred             CCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccC
Q 045751          149 NLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSL  227 (492)
Q Consensus       149 ~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l  227 (492)
                      +.....+.... ...++.++++.|...     ..++.+..+-.|..|+..+|.+..+|+.+..+..|..|++.+|++.++
T Consensus       101 n~ls~lp~~i~s~~~l~~l~~s~n~~~-----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l  175 (565)
T KOG0472|consen  101 NKLSELPEQIGSLISLVKLDCSSNELK-----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL  175 (565)
T ss_pred             chHhhccHHHhhhhhhhhhhcccccee-----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC
Confidence            34444443333 555555555555544     233444445555555555555555555555555555555555555555


Q ss_pred             chhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCc
Q 045751          228 PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLP  305 (492)
Q Consensus       228 p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~  305 (492)
                      |+.. -+++.|++||...|-++.+|+.++.+.+|..|++.+|++ ..+| .|+.+..|.+++++.  ....+++...+++
T Consensus       176 ~~~~-i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~  252 (565)
T KOG0472|consen  176 PENH-IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN  252 (565)
T ss_pred             CHHH-HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence            5554 445555555555555555555555555555555555554 2333 444444444444442  2223333333555


Q ss_pred             ccceEEeeeccCcchhhHHHHhhcCCCCCeEEeec
Q 045751          306 NLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN  340 (492)
Q Consensus       306 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  340 (492)
                      ++..|++++|   ...++|+.+.-+++|+.||++.
T Consensus       253 ~l~vLDLRdN---klke~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  253 SLLVLDLRDN---KLKEVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             cceeeecccc---ccccCchHHHHhhhhhhhcccC
Confidence            5555555554   4444555555555555555554

>PLN03210 Resistant to P

Probab=99.85  E-value=4.7e-21  Score=214.04  Aligned_cols=289  Identities=22%  Similarity=0.218  Sum_probs=204.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc------CC-CCchhhcccc-ccCEEEccCCCCccCchhH
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV------LS-QLPSGIENLF-FLRYLKLNIPSLKSLPSSF  231 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~------l~-~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~  231 (492)
                      ...++.+.+......  ........|.+|++|+.|.+..+.      +. .+|..+..++ +|+.|.+.++.+..+|..+
T Consensus       531 ~~~v~~i~l~~~~~~--~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f  608 (1153)
T PLN03210        531 TKKVLGITLDIDEID--ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF  608 (1153)
T ss_pred             cceeeEEEeccCccc--eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence            456666666544433  233567789999999999997653      22 5777777665 6999999999999999887


Q ss_pred             HhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCcccc
Q 045751          232 LSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLPNLR  308 (492)
Q Consensus       232 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~~L~  308 (492)
                        ...+|+.|++++|.+..+|.++..+++|+.|++++|.....+|. ++.+++|+.|++.+   ....+.. ++.+++|+
T Consensus       609 --~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~  684 (1153)
T PLN03210        609 --RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLE  684 (1153)
T ss_pred             --CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCC
Confidence              68999999999999999999999999999999998876677774 77799999999975   2334445 89999999


Q ss_pred             eEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeE
Q 045751          309 KLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVL  388 (492)
Q Consensus       309 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L  388 (492)
                      .|++++|  .....+|..+ ++++|+.|+++   .|..++.+    ...+.+|++|++++|.+. ..|..+ .+++|+.|
T Consensus       685 ~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Ls---gc~~L~~~----p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L  752 (1153)
T PLN03210        685 DLDMSRC--ENLEILPTGI-NLKSLYRLNLS---GCSRLKSF----PDISTNISWLDLDETAIE-EFPSNL-RLENLDEL  752 (1153)
T ss_pred             EEeCCCC--CCcCccCCcC-CCCCCCEEeCC---CCCCcccc----ccccCCcCeeecCCCccc-cccccc-cccccccc
Confidence            9999998  5667777655 78999999999   46666543    222367888888887763 333322 45666666


Q ss_pred             EEeccccC---CC---cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEE
Q 045751          389 KLKKNSYL---GR---KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLE  462 (492)
Q Consensus       389 ~l~~~~~~---~~---~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  462 (492)
                      .+.++...   ..   ..+.....+++|+.|++++|+.+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence            66542210   00   001112234566666666666666666666666666666666666666666554 566666666


Q ss_pred             ecCCC
Q 045751          463 LWRPQ  467 (492)
Q Consensus       463 l~~c~  467 (492)
                      +++|.
T Consensus       832 Ls~c~  836 (1153)
T PLN03210        832 LSGCS  836 (1153)
T ss_pred             CCCCC
Confidence            66664

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=1.4e-22  Score=187.41  Aligned_cols=263  Identities=21%  Similarity=0.190  Sum_probs=186.3

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ...++.++++.|...     .....+.++..|.+|++..|.+..+|++++.+..++.|+.++|++.++|+.+ +.+.+|.
T Consensus        44 qv~l~~lils~N~l~-----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~  117 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLE-----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLV  117 (565)
T ss_pred             hcchhhhhhccCchh-----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhh
Confidence            445677778888775     5566778888899999999988888988998888999999999999999988 8899999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccC
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLS  317 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~  317 (492)
                      +|+.++|.+.++|++++.+..|..++..+|++ ..+|.+++++.++..+.+.+  ....++. .-+++.|++|+...|  
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N--  193 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN--  193 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh--
Confidence            99999998888888888888888888888877 46777777766666666653  3334444 444677777776665  


Q ss_pred             cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751          318 NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG  397 (492)
Q Consensus       318 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  397 (492)
                       ..+.+|..++.+                            .+|..|++..|++. .. +.|+++..|++|+++.|.+..
T Consensus       194 -~L~tlP~~lg~l----------------------------~~L~~LyL~~Nki~-~l-Pef~gcs~L~Elh~g~N~i~~  242 (565)
T KOG0472|consen  194 -LLETLPPELGGL----------------------------ESLELLYLRRNKIR-FL-PEFPGCSLLKELHVGENQIEM  242 (565)
T ss_pred             -hhhcCChhhcch----------------------------hhhHHHHhhhcccc-cC-CCCCccHHHHHHHhcccHHHh
Confidence             566666666555                            44445555555542 22 256666666777776665543


Q ss_pred             CcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          398 RKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       398 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .. ......+++|..|++.+| .++++|.++.-+.+|++|++++|. ++.+|..++++ .|+.|.+.|+|
T Consensus       243 lp-ae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  243 LP-AEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hH-HHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence            21 222346677777777776 677777777777777777777665 33567777777 77777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=8.6e-22  Score=199.60  Aligned_cols=313  Identities=20%  Similarity=0.220  Sum_probs=181.9

Q ss_pred             CeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEE
Q 045751          140 MIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLK  218 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~  218 (492)
                      ++.++.+.++.+...+...- .++|+.|.++.|.+.     ..+....++++|++|.|.+|.+..+|.++..+++|++|+
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD  120 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence            36677777555555553333 788888888888775     445677788888888888888888888888888888888


Q ss_pred             ccCCCCccCchhHHhcCCCccEEecCCC-cccc-------------------hHHHhhcccccccccccccccCCC----
Q 045751          219 LNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHH-------------------TADVFWEMNKLRHLNFGLFTLPAY----  274 (492)
Q Consensus       219 l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~-------------------lp~~~~~l~~L~~L~L~~~~~~~~----  274 (492)
                      +++|.+..+|..+ ..+..++.++.++| .+..                   ++..+..++.  .|+|.+|.+...    
T Consensus       121 lS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~  197 (1081)
T KOG0618|consen  121 LSFNHFGPIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN  197 (1081)
T ss_pred             cchhccCCCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence            8888888888776 55555555554444 1111                   1111222222  234443333200    


Q ss_pred             -------------------------------CCc----cccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751          275 -------------------------------PRN----DCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       275 -------------------------------~p~----~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                                                     .|-    ....-++|+.++++. ....++++++.+.+|+.+.+..|   
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N---  274 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN---  274 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch---
Confidence                                           000    000022344444442 22233465888888998888887   


Q ss_pred             chhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe----------------------------ecC------
Q 045751          319 NQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL----------------------------DEY------  355 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l----------------------------~~~------  355 (492)
                      ....+|..+...++|+.|.+..++         +...|++|++                            .++      
T Consensus       275 ~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~  354 (1081)
T KOG0618|consen  275 RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE  354 (1081)
T ss_pred             hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence            446666666666666666555422         3444555554                            011      


Q ss_pred             --CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc-----
Q 045751          356 --QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT-----  428 (492)
Q Consensus       356 --~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-----  428 (492)
                        .. +.|+.|.+.+|.+++...+.+.++++|+.|+|++|++.... ...+..++.|+.|.|++| .++.+|...     
T Consensus       355 e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~  431 (1081)
T KOG0618|consen  355 ENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGN-KLTTLPDTVANLGR  431 (1081)
T ss_pred             chhh-HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhh
Confidence              12 45666677777777777777777777777777777654321 223456666777777776 555555444     


Q ss_pred             -----------------CccccccEEEEeecCCcC-ccchhccCCCCCcEEEecCCC
Q 045751          429 -----------------GAMPKLECLIIDPCAYLK-RLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       429 -----------------~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~  467 (492)
                                       ..++.|+.++++.|.... .+|..... ++|++|+++|+.
T Consensus       432 L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence                             455566666666554332 23332222 667777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=3e-20  Score=188.50  Aligned_cols=315  Identities=23%  Similarity=0.190  Sum_probs=175.3

Q ss_pred             CCCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccC
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLR  215 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~  215 (492)
                      ...+++++.+..+.+..++.... ..+|+++.+.+|...     ..+..+..+++|.+|+++.|.+...|..+..+..+.
T Consensus        66 ~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-----~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~  140 (1081)
T KOG0618|consen   66 LLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-----SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEE  140 (1081)
T ss_pred             hHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-----cCchhHHhhhcccccccchhccCCCchhHHhhhHHH
Confidence            34567888888788888886666 999999999999886     778889999999999999998876665544432222


Q ss_pred             E-----------------------------------------EEccCCCCccCchhH-------H---------------
Q 045751          216 Y-----------------------------------------LKLNIPSLKSLPSSF-------L---------------  232 (492)
Q Consensus       216 ~-----------------------------------------L~l~~~~i~~lp~~~-------~---------------  232 (492)
                      .                                         |+|++|.+..+.-..       +               
T Consensus       141 ~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~  220 (1081)
T KOG0618|consen  141 ELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPS  220 (1081)
T ss_pred             HHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcc
Confidence            2                                         444443332100000       0               


Q ss_pred             -----------------hcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--C
Q 045751          233 -----------------SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--P  293 (492)
Q Consensus       233 -----------------~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~  293 (492)
                                       .--.+|+++|++.+++..+|..++.+.+|+.++..+|.+ ..+|..+...++|+.+.+..  .
T Consensus       221 l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  221 LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             hheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhh
Confidence                             001235555555555555555555555555555555555 34555555555555554442  2


Q ss_pred             CccchhhhCCCcccceEEeeeccCcchhhHHHHhh-cCC-CCCeEEeec---------C-CCCCCccEEEe---------
Q 045751          294 RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLY-KLS-SLESLKLVN---------E-SKMPRLSKIVL---------  352 (492)
Q Consensus       294 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~-~L~~L~l~~---------~-~~~~~L~~L~l---------  352 (492)
                      ...++. ...+++|++|++..|   ....+|+.+- ... .|+.|+.+.         + .....|+.|++         
T Consensus       300 ~yip~~-le~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  300 EYIPPF-LEGLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhCCCc-ccccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            233333 555666666666665   2222222111 000 011111111         0 02222333322         


Q ss_pred             --ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC---------------------cccccCCCCcc
Q 045751          353 --DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR---------------------KLTCGSHGFPK  409 (492)
Q Consensus       353 --~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~~  409 (492)
                        .+.++ ++|+.|+|++|++.......+.+++.|+.|+|+||.++..                     .+| .+..++.
T Consensus       376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence              23445 6666666666665434444455666666666666654311                     122 4567889


Q ss_pred             ccEEeecccCCcceEEEccC-ccccccEEEEeecCCcCccchhccCCCCCcEEEec
Q 045751          410 LKVLHLKSMLWLEEWTMGTG-AMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELW  464 (492)
Q Consensus       410 L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  464 (492)
                      |+.++++.| +++.+..... .-|+|+.|++++|..+..--..+..+.++...++.
T Consensus       454 L~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  454 LKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT  508 (1081)
T ss_pred             ceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence            999999987 7774432222 22899999999998654333344445555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=6.5e-16  Score=161.52  Aligned_cols=233  Identities=21%  Similarity=0.108  Sum_probs=115.1

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      +|+.|++.+|.++.+|..   +++|++|++++|.++.+|..    .++|+.|++++|.+..+|..   .++|+.|++++|
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCC
Confidence            566666666666655542   35666666666666666532    24556666666655555542   234555666666


Q ss_pred             ccCCCCCccccCCcccceeecCCC-CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751          270 TLPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS  348 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~  348 (492)
                      .+. .+|..   .++|+.|+++++ ...++.   -..+|+.|++++|   ....+|..   ..+|+.|++++    .+|+
T Consensus       293 ~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N---~L~~LP~l---p~~Lq~LdLS~----N~Ls  355 (788)
T PRK15387        293 QLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN---QLTSLPTL---PSGLQELSVSD----NQLA  355 (788)
T ss_pred             ccc-ccccc---ccccceeECCCCccccCCC---CcccccccccccC---cccccccc---ccccceEecCC----CccC
Confidence            553 33332   244555555431 111111   1124555566655   22223321   13566666653    2233


Q ss_pred             EEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc
Q 045751          349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT  428 (492)
Q Consensus       349 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  428 (492)
                      .    +..+|++|+.|++++|.+.. .|..   ..+|+.|++++|.+...  +.   ..++|+.|++++| .++.+|.. 
T Consensus       356 ~----LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L--P~---l~s~L~~LdLS~N-~LssIP~l-  420 (788)
T PRK15387        356 S----LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL--PV---LPSELKELMVSGN-RLTSLPML-  420 (788)
T ss_pred             C----CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC--CC---cccCCCEEEccCC-cCCCCCcc-
Confidence            1    22223555666666665532 2221   23456666666655431  11   1245666666665 45555432 


Q ss_pred             CccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          429 GAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       429 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                        ..+|+.|++++|.. +.+|..+.++++|+.|++++|+
T Consensus       421 --~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        421 --PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             --hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence              23455566665543 3556656666666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=6.4e-16  Score=161.54  Aligned_cols=262  Identities=17%  Similarity=0.057  Sum_probs=186.9

Q ss_pred             eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEcc
Q 045751          141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLN  220 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  220 (492)
                      -..+.+..+....+| ..+.++|+.|.+.+|.+..    + +   ...++|++|++++|.++.+|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~LtsLP-~~l~~~L~~L~L~~N~Lt~----L-P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTS----L-P---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCcCC-cchhcCCCEEEccCCcCCC----C-C---CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            345566645555444 3446689999999998762    2 2   2358899999999999988863   4689999999


Q ss_pred             CCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchh
Q 045751          221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPD  299 (492)
Q Consensus       221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~  299 (492)
                      +|.+..+|..    ..+|+.|++++|.++.+|..   .++|+.|++++|.+.+ +|...   .+|+.|++.+ ....++.
T Consensus       271 ~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~  339 (788)
T PRK15387        271 SNPLTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPT  339 (788)
T ss_pred             CCchhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccccccc
Confidence            9999988853    35688999999999988863   5789999999998864 55433   2455555553 1111222


Q ss_pred             hhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccc
Q 045751          300 ILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL  379 (492)
Q Consensus       300 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l  379 (492)
                       +  ..+|+.|++++|   ....+|..   ..+|+.|+++.    ..|..    +..+|.+|+.|++++|.+.. .|.. 
T Consensus       340 -l--p~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~----N~L~~----LP~l~~~L~~LdLs~N~Lt~-LP~l-  400 (788)
T PRK15387        340 -L--PSGLQELSVSDN---QLASLPTL---PSELYKLWAYN----NRLTS----LPALPSGLKELIVSGNRLTS-LPVL-  400 (788)
T ss_pred             -c--ccccceEecCCC---ccCCCCCC---Ccccceehhhc----ccccc----CcccccccceEEecCCcccC-CCCc-
Confidence             1  247999999998   33345532   24677777763    33332    23344789999999999864 3322 


Q ss_pred             cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751          380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL  452 (492)
Q Consensus       380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l  452 (492)
                        .++|+.|++++|.+...  +.   .+.+|+.|++++| .++.+|..++.+++|+.|++++|+.....|..+
T Consensus       401 --~s~L~~LdLS~N~LssI--P~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        401 --PSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             --ccCCCEEEccCCcCCCC--Cc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence              36899999999988752  32   2457899999998 788999989999999999999999877665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=2e-15  Score=158.79  Aligned_cols=243  Identities=20%  Similarity=0.226  Sum_probs=144.4

Q ss_pred             CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGL  268 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~  268 (492)
                      .+..+|+++++.++.+|..+.  ++|+.|++++|.++.+|..+ .  .+|++|++++|.++.+|..+.  ++|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence            345667777776666665543  36777777777777777665 2  467777777776666665443  3567777777


Q ss_pred             cccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751          269 FTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       269 ~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      |.+. .+|..+.  ++|+.|++++  ....+.. +  .++|+.|++++|   ....+|..+.  ++|+.|++++    .+
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~----N~  315 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDN---SIRTLPAHLP--SGITHLNVQS----NS  315 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCC---ccccCcccch--hhHHHHHhcC----Cc
Confidence            7664 4555443  3566666653  1112222 2  246777777776   2223343322  3566666663    23


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM  426 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  426 (492)
                      +..++   ..+|++|+.|++++|.++. .|..+.  ++|+.|++++|.+...  +..  -.++|+.|++++| .++.+|.
T Consensus       316 Lt~LP---~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L--P~~--lp~~L~~LdLs~N-~Lt~LP~  384 (754)
T PRK15370        316 LTALP---ETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL--PET--LPPTITTLDVSRN-ALTNLPE  384 (754)
T ss_pred             cccCC---ccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC--Chh--hcCCcCEEECCCC-cCCCCCH
Confidence            33221   1123678888888887654 333332  6788888888876532  221  2357888888887 6666765


Q ss_pred             ccCccccccEEEEeecCCcCccchhc----cCCCCCcEEEecCCC
Q 045751          427 GTGAMPKLECLIIDPCAYLKRLPKQL----WSVKRFKKLELWRPQ  467 (492)
Q Consensus       427 ~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~c~  467 (492)
                      .+.  ++|+.|++++|... .+|..+    ..++++..|++.++|
T Consensus       385 ~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        385 NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence            433  36888888887644 555433    445777888888877

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=2.9e-17  Score=135.43  Aligned_cols=148  Identities=22%  Similarity=0.278  Sum_probs=93.4

Q ss_pred             cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      ++.+...|-|++|+++.+|+.|..+.+|+.|++.+|+|+++|.++ +.+++|++|++.-|.+..+|.+|+.++.|+.||+
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            445555666677777666666777777777777777777777777 7777777777777766667777777777777777


Q ss_pred             cccccCC-CCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEee
Q 045751          267 GLFTLPA-YPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLV  339 (492)
Q Consensus       267 ~~~~~~~-~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  339 (492)
                      .+|++.. .+|..+..+++|+-+++++  ....+++ ++++++|+.|.+++|   ..-.+|..++.++.|++|.+.
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcc
Confidence            7666543 4555555556666555553  2233444 666666666666665   444555555555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=5e-17  Score=134.05  Aligned_cols=159  Identities=26%  Similarity=0.374  Sum_probs=140.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ++++..|.++.|...     ..++.+..+.+|++|++.+|+++.+|.+++.+++|+.|++.-|++..+|..+ +.++.|+
T Consensus        32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~le  105 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALE  105 (264)
T ss_pred             hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhh
Confidence            778888889999886     5667788999999999999999999999999999999999999999999998 9999999


Q ss_pred             EEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751          240 TLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       240 ~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      .||+++|++  ..+|..|..++.|+.|.++.|.+ ..+|..++++++|+.+.+..  ..+.+.+ ++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc
Confidence            999999966  57899999999999999999987 68999999999999999974  4566777 999999999999998


Q ss_pred             cCcchhhHHHHhhc
Q 045751          316 LSNNQSLLSKSLYK  329 (492)
Q Consensus       316 ~~~~~~~~~~~l~~  329 (492)
                         ....+|..++.
T Consensus       184 ---rl~vlppel~~  194 (264)
T KOG0617|consen  184 ---RLTVLPPELAN  194 (264)
T ss_pred             ---eeeecChhhhh
Confidence               44455555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=1e-14  Score=153.44  Aligned_cols=223  Identities=17%  Similarity=0.265  Sum_probs=109.3

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      +|+.|++++|.++.+|..+.  .+|++|++++|.++.+|..+ .  .+|+.|++++|.+..+|..+.  .+|+.|++++|
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence            45555555555555554332  24555555555555555443 1  245555555555555554332  24555555555


Q ss_pred             ccCCCCCccccCCcccceeecCCC--CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          270 TLPAYPRNDCGSLENLNFISALHP--RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      .+. .+|..+.  ++|+.|++++.  ...+.. +  .++|+.|++++|   ....+|..+.  ++|+.|++++    ..+
T Consensus       273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N---~Lt~LP~~l~--~sL~~L~Ls~----N~L  337 (754)
T PRK15370        273 KIS-CLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSN---SLTALPETLP--PGLKTLEAGE----NAL  337 (754)
T ss_pred             ccC-ccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCC---ccccCCcccc--ccceeccccC----Ccc
Confidence            443 3444332  24444544421  111111 1  124556666665   2222333221  4566666653    123


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG  427 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  427 (492)
                      ..++   ..+|++|+.|++++|.+. ..|..+  .+.|+.|++++|.++..  +..+  ..+|+.|++++| .+..+|..
T Consensus       338 t~LP---~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L--P~~l--~~sL~~LdLs~N-~L~~LP~s  406 (754)
T PRK15370        338 TSLP---ASLPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL--PENL--PAALQIMQASRN-NLVRLPES  406 (754)
T ss_pred             ccCC---hhhcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC--CHhH--HHHHHHHhhccC-CcccCchh
Confidence            3221   112357777777777764 233333  25677777777766532  2211  235777777776 55555543


Q ss_pred             c----CccccccEEEEeecCCc
Q 045751          428 T----GAMPKLECLIIDPCAYL  445 (492)
Q Consensus       428 ~----~~l~~L~~L~l~~c~~l  445 (492)
                      +    +.++++..|++.+|+..
T Consensus       407 l~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        407 LPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhcCCCccEEEeeCCCcc
Confidence            2    33467777777777753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.54  E-value=6.5e-16  Score=143.39  Aligned_cols=270  Identities=18%  Similarity=0.121  Sum_probs=177.1

Q ss_pred             ccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccC-CCCccCchhHHhcC
Q 045751          158 DFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNI-PSLKSLPSSFLSSI  235 (492)
Q Consensus       158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~-~~i~~lp~~~~~~l  235 (492)
                      ..-+....+.|..|.+.    .+++..|+.+++||.|||++|.|+ --|+.|..+..|..|-+-+ |+|+++|...|++|
T Consensus        64 ~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            33667778888888886    588889999999999999999998 4478888888887776655 89999999999999


Q ss_pred             CCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCc-cccCCcccceeecCCCC----cc-----------ch
Q 045751          236 SNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALHPR----CC-----------TP  298 (492)
Q Consensus       236 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~~~----~~-----------~~  298 (492)
                      ..|+.|.+.-|++.-++ +.+..+++|..|.+..|.+. .++. .+..+..++.+.+....    ..           +.
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            99999999888887665 44888999999988888763 3343 45556666666554211    00           01


Q ss_pred             hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeE--EeecCC----CCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751          299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL--KLVNES----KMPRLSKIVLDEYQFPPSLTHLSFSNTELM  372 (492)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L--~l~~~~----~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~  372 (492)
                      + ++.........+...+  ....-+..+...  ++.+  .+...+    .||.-     .+..+ ++|++|+|++|.++
T Consensus       219 e-tsgarc~~p~rl~~~R--i~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~-----cf~~L-~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  219 E-TSGARCVSPYRLYYKR--INQEDARKFLCS--LESLPSRLSSEDFPDSICPAK-----CFKKL-PNLRKLNLSNNKIT  287 (498)
T ss_pred             h-cccceecchHHHHHHH--hcccchhhhhhh--HHhHHHhhccccCcCCcChHH-----HHhhc-ccceEeccCCCccc
Confidence            1 1222222211121111  000000000000  1111  000000    11110     35677 88899999999988


Q ss_pred             CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCc
Q 045751          373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYL  445 (492)
Q Consensus       373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l  445 (492)
                      .....+|.++..++.|.|..|.+.... ...+.++..|+.|+|.+| .++.+ |..+..+.+|.+|++-.||..
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence            888888888888999999888765433 344677888888999888 55544 556788888888888877753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=2.9e-16  Score=145.74  Aligned_cols=271  Identities=15%  Similarity=0.120  Sum_probs=176.9

Q ss_pred             cEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCC-CcccchHHH-hhcccccccccc
Q 045751          190 FLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF-SYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~-~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      .-..++|..|.|+.+| .+|+.+++||.|||+.|.|+.|.+..|..+++|..|-+.+ |.|+.+|.. |+.+..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4567888999999887 6778899999999999999988887778998888877666 689999865 888899999988


Q ss_pred             cccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCc----------chhhHHHHhhcCCCCC
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSN----------NQSLLSKSLYKLSSLE  334 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~----------~~~~~~~~l~~l~~L~  334 (492)
                      .-|++.....+.+..++++..|.+..  .......++..+..++.+.+..|...          .....|..++...-..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            88877655555566666666666653  12222223555666666665554200          0000111111111111


Q ss_pred             eEEeecCCCCCCccEEEe--ecCCCCCCceEEEEecccCCCCCc-ccccCCCccCeEEEeccccCCCcccccCCCCcccc
Q 045751          335 SLKLVNESKMPRLSKIVL--DEYQFPPSLTHLSFSNTELMEDPM-PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLK  411 (492)
Q Consensus       335 ~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  411 (492)
                      ...+.+    .+...++-  ..... ..+.+=-.+.|......| ..|..+|+|++|++++|.++... ...+.+...++
T Consensus       228 p~rl~~----~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~  301 (498)
T KOG4237|consen  228 PYRLYY----KRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQ  301 (498)
T ss_pred             hHHHHH----HHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcchhhhh
Confidence            011100    00000000  00000 111111112333323333 45889999999999999988765 56678899999


Q ss_pred             EEeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          412 VLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       412 ~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .|.|..| .++.+.. .+..+..|+.|++.+|..+..-|..+..+.+|.+|.+-++|
T Consensus       302 eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  302 ELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            9999998 7776643 47899999999999999888888889999999999998766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=2.2e-15  Score=146.37  Aligned_cols=274  Identities=19%  Similarity=0.140  Sum_probs=153.6

Q ss_pred             EEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-------CchhHHh
Q 045751          166 LLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-------LPSSFLS  233 (492)
Q Consensus       166 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~  233 (492)
                      |++..+...   .......+..+.+|++|+++++.++     .++..+...++|++|+++++.+..       ++..+ .
T Consensus         3 l~L~~~~l~---~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~   78 (319)
T cd00116           3 LSLKGELLK---TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-T   78 (319)
T ss_pred             cccccCccc---ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-H
Confidence            455555443   2344566777788999999999874     355666777789999998877663       22333 6


Q ss_pred             cCCCccEEecCCCccc-chHHHhhcccc---cccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCC-cccc
Q 045751          234 SISNLYTLDMPFSYIH-HTADVFWEMNK---LRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRL-PNLR  308 (492)
Q Consensus       234 ~l~~L~~L~L~~~~l~-~lp~~~~~l~~---L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l-~~L~  308 (492)
                      .+++|+.|++++|.+. ..+..+..+.+   |++|++++|.+......                  .....+..+ ++|+
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~------------------~l~~~l~~~~~~L~  140 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR------------------LLAKGLKDLPPALE  140 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH------------------HHHHHHHhCCCCce
Confidence            7888999999888664 34444555555   88888888875421100                  111114455 6777


Q ss_pred             eEEeeeccCc--chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCCc----c
Q 045751          309 KLRIHGDLSN--NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDPM----P  377 (492)
Q Consensus       309 ~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~----~  377 (492)
                      .|++++|.-.  ....++..+..+++|+.|+++++    .+..-.+     .+..+ ++|++|++++|.+.+...    .
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANN----GIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC----CCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHH
Confidence            7777777311  12234445555566666666531    1110000     12233 466777777766543322    2


Q ss_pred             cccCCCccCeEEEeccccCCCcccccCC----CCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCCcCc-
Q 045751          378 TLEKLPLLQVLKLKKNSYLGRKLTCGSH----GFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAYLKR-  447 (492)
Q Consensus       378 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~-  447 (492)
                      .+..+++|+.|++++|.+.+..+.....    ..+.|+.|++++| .++     .+...+..+++|+.+++++|..... 
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence            3445667777777766665432211111    2356777777766 332     1222234456677777776665532 


Q ss_pred             ---cchhccCC-CCCcEEEecCCC
Q 045751          448 ---LPKQLWSV-KRFKKLELWRPQ  467 (492)
Q Consensus       448 ---lp~~l~~l-~~L~~L~l~~c~  467 (492)
                         +...+... +.|+++++.+.|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         295 AQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHHhhcCCchhhcccCCCC
Confidence               33333333 566666666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=8.5e-15  Score=142.26  Aligned_cols=259  Identities=19%  Similarity=0.077  Sum_probs=161.0

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-------CchhhccccccCEEEccCCCCc-cCchhH
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-------LPSGIENLFFLRYLKLNIPSLK-SLPSSF  231 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-------l~~~~~~l~~L~~L~l~~~~i~-~lp~~~  231 (492)
                      .++|+.|.+.++.............+...+.++.|+++++.+..       ++..+..+++|++|++++|.+. ..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            67799999999987521223456677888999999999987652       3355677889999999999988 444444


Q ss_pred             HhcCCC---ccEEecCCCccc-----chHHHhhcc-cccccccccccccCCCCCccccCCcccceeecCCCCccchhhhC
Q 045751          232 LSSISN---LYTLDMPFSYIH-----HTADVFWEM-NKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILG  302 (492)
Q Consensus       232 ~~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~  302 (492)
                       ..+.+   |++|++++|.+.     .+...+..+ ++|+.|++++|.+.+..+..+                 ... +.
T Consensus       102 -~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----------------~~~-~~  162 (319)
T cd00116         102 -ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL-----------------AKA-LR  162 (319)
T ss_pred             -HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH-----------------HHH-HH
Confidence             55555   999999999765     334456677 899999999998763221111                 111 44


Q ss_pred             CCcccceEEeeeccC--cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCC
Q 045751          303 RLPNLRKLRIHGDLS--NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       303 ~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                      .+++|++|++++|.-  .....++..+..+++|+.|++++   + .+.....     .+..+ ++|++|++++|.+.+..
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---n-~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN---N-GLTDEGASALAETLASL-KSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC---C-ccChHHHHHHHHHhccc-CCCCEEecCCCcCchHH
Confidence            555566666666520  01122334444555666666653   1 1111100     33455 67788888777765433


Q ss_pred             ccccc-----CCCccCeEEEeccccCCCc---ccccCCCCccccEEeecccCCcceE-----EEccCcc-ccccEEEEee
Q 045751          376 MPTLE-----KLPLLQVLKLKKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEW-----TMGTGAM-PKLECLIIDP  441 (492)
Q Consensus       376 ~~~l~-----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l-~~L~~L~l~~  441 (492)
                      ...+.     ..+.|+.|++++|.+++..   +......+++|+.+++++| .++..     ...+... +.|+.+++.+
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            32222     2467888888877775332   1223445577888888887 44322     2223344 6777777776


Q ss_pred             cC
Q 045751          442 CA  443 (492)
Q Consensus       442 c~  443 (492)
                      ++
T Consensus       317 ~~  318 (319)
T cd00116         317 DS  318 (319)
T ss_pred             CC
Confidence            65

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-12  Score=140.17  Aligned_cols=201  Identities=21%  Similarity=0.154  Sum_probs=141.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc--CCCCc-hhhccccccCEEEccCC-CCccCchhHHhcC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV--LSQLP-SGIENLFFLRYLKLNIP-SLKSLPSSFLSSI  235 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~l~-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~~l  235 (492)
                      ....|.+.+.++....     . ..-..++.|++|-+.+|.  +..++ +.|..++.|++||+++| .+.++|..+ +.+
T Consensus       522 ~~~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GEL  594 (889)
T ss_pred             hhheeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhh
Confidence            6788999998887752     1 222345579999999986  55555 55788999999999976 566999999 999


Q ss_pred             CCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-----CCccchhhhCCCcccceE
Q 045751          236 SNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-----PRCCTPDILGRLPNLRKL  310 (492)
Q Consensus       236 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-----~~~~~~~~l~~l~~L~~L  310 (492)
                      .+|++|+++++.+..+|.+++++.+|.+|++..+.-...+|.....+++|+++.+..     ....+.+ +..+.+|+.+
T Consensus       595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~l  673 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENL  673 (889)
T ss_pred             hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhh
Confidence            999999999999999999999999999999998876666666666699999998864     2334455 6777777777


Q ss_pred             EeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC
Q 045751          311 RIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME  373 (492)
Q Consensus       311 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~  373 (492)
                      .+....   . .+...+..++.|..+...---.....+.+...+..+ .+|+.|.+.+|.+..
T Consensus       674 s~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  674 SITISS---V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISE  731 (889)
T ss_pred             eeecch---h-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCch
Confidence            776542   1 222223333333322221000012333444356667 788888888887643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=3.5e-13  Score=123.79  Aligned_cols=253  Identities=18%  Similarity=0.203  Sum_probs=142.4

Q ss_pred             hHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCC---CCc-cCchhH------HhcCCCccEEecC
Q 045751          180 DCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIP---SLK-SLPSSF------LSSISNLYTLDMP  244 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~---~i~-~lp~~~------~~~l~~L~~L~L~  244 (492)
                      ........+..+..++|+||.+.     .+.+.+.+.++|+.-++++-   +.. ++|+.+      ...+++|++||||
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            34455566677777777777665     33445556667777766652   122 555433      1456788888888


Q ss_pred             CCcc-----cchHHHhhcccccccccccccccCCCCCccccC-CcccceeecCCCCccchhhhCCCcccceEEeeecc--
Q 045751          245 FSYI-----HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL--  316 (492)
Q Consensus       245 ~~~l-----~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--  316 (492)
                      +|-+     ..+-..+.++..|++|.|.+|.+...--..++. |..|...         .. .+.-+.|+++....|+  
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~---------kk-~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN---------KK-AASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH---------hc-cCCCcceEEEEeeccccc
Confidence            8833     233344777888888888888763222222222 2222211         11 5566778888888775  


Q ss_pred             CcchhhHHHHhhcCCCCCeEEeecCC-CCCCccEEEeecCCCCCCceEEEEecccCCCCC----cccccCCCccCeEEEe
Q 045751          317 SNNQSLLSKSLYKLSSLESLKLVNES-KMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP----MPTLEKLPLLQVLKLK  391 (492)
Q Consensus       317 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~l~  391 (492)
                      +.....+...+...+.|+.+.++.+. ..+...-+...+..+ ++|+.|+|.+|.++...    ...+..+|+|+.|+++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            33344555666666777777776522 111111111134455 77777777777764432    2344566777777777


Q ss_pred             ccccCCCccc----ccCCCCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCC
Q 045751          392 KNSYLGRKLT----CGSHGFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAY  444 (492)
Q Consensus       392 ~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~  444 (492)
                      +|.+......    .....+|+|+.|.+.+| .++     .+.......|.|+.|++++|..
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7766554311    11234677777777776 333     1122244567777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.2e-12  Score=120.72  Aligned_cols=242  Identities=20%  Similarity=0.191  Sum_probs=163.6

Q ss_pred             CchhhccccccCEEEccCCCCccCch--hHHhcCCCccEEecCCC---cccchHHHhhcccccccccccccccCCCCCcc
Q 045751          204 LPSGIENLFFLRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFS---YIHHTADVFWEMNKLRHLNFGLFTLPAYPRND  278 (492)
Q Consensus       204 l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~---~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~  278 (492)
                      +...=.++.+|+...|.++.+...+.  .. ..|++++.|||+.|   ++..+-....++++|+.|+++.|.+.......
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence            33334567788888888888876663  55 78999999999999   44455555788999999999998763211110


Q ss_pred             ccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCC
Q 045751          279 CGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFP  358 (492)
Q Consensus       279 ~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp  358 (492)
                                        .   -..+++|+.|.++.|. .....+...+..+|+|+.|.+.++.   .+-.-......+ 
T Consensus       192 ------------------~---~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~---~~~~~~~~~~i~-  245 (505)
T KOG3207|consen  192 ------------------T---TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE---IILIKATSTKIL-  245 (505)
T ss_pred             ------------------c---hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc---ccceecchhhhh-
Confidence                              0   1245677888888884 3345555666677888888887531   000000022234 


Q ss_pred             CCceEEEEecccCCC-CCcccccCCCccCeEEEeccccCCCccccc-----CCCCccccEEeecccCCcceEEE--ccCc
Q 045751          359 PSLTHLSFSNTELME-DPMPTLEKLPLLQVLKLKKNSYLGRKLTCG-----SHGFPKLKVLHLKSMLWLEEWTM--GTGA  430 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~--~~~~  430 (492)
                      ..|++|+|++|.+.. ......+.+|.|+.|+++.+.+.+...+..     ...|++|++|.+..| .+.+|+.  .+..
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRT  324 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhc
Confidence            789999999998633 344667899999999999998876554433     467999999999998 6666654  3567


Q ss_pred             cccccEEEEeecCCcCc----cchhccCCCCCcEEEecCCCHHHHHH
Q 045751          431 MPKLECLIIDPCAYLKR----LPKQLWSVKRFKKLELWRPQPELRQK  473 (492)
Q Consensus       431 l~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~c~~~~~~~  473 (492)
                      +++|+.|.+..++..+.    --..++.+++|..|+=..|.+..+.+
T Consensus       325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~  371 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRD  371 (505)
T ss_pred             cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhh
Confidence            88889998887766541    11245667777777666665444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.15  E-value=4.1e-12  Score=119.36  Aligned_cols=290  Identities=16%  Similarity=0.138  Sum_probs=166.0

Q ss_pred             CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc-CC--CCchhhccccccCEEEccCC-CCccC-chhHHhcC
Q 045751          161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV-LS--QLPSGIENLFFLRYLKLNIP-SLKSL-PSSFLSSI  235 (492)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~--~l~~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~~l  235 (492)
                      ..|+.|.+.++....  ......+..++++++.|.+.+|. ++  .+-..-..+++|++|++..| .++.. -..+...+
T Consensus       138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            467777777766542  23455566778888888887776 33  22222245777888888773 44421 12222567


Q ss_pred             CCccEEecCCC-cccc--hHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEe
Q 045751          236 SNLYTLDMPFS-YIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRI  312 (492)
Q Consensus       236 ~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l  312 (492)
                      ++|++|++++| .++.  +......+..++.+.+.+|.-.+                    ...+...-+.+..+.++++
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------------------le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------------------LEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------------------HHHHHHHhccChHhhccch
Confidence            88888888887 4432  22334445555555554442110                    0000000223333444444


Q ss_pred             eeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-e-cCCCCCCceEEEEeccc-CCCCCccccc-CCCccCeE
Q 045751          313 HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-D-EYQFPPSLTHLSFSNTE-LMEDPMPTLE-KLPLLQVL  388 (492)
Q Consensus       313 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~-~~~lp~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L  388 (492)
                      ..|..-....+...-..+..|+.|+.+   .+.++....+ . ..++ .+|+.|.++.|+ +++.....++ +++.|+.+
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s---~~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l  351 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYS---SCTDITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERL  351 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhccc---CCCCCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence            444211122222223344555666555   3444333332 1 2245 778888888877 4444455554 78888888


Q ss_pred             EEeccccCCCc-ccccCCCCccccEEeecccCCcceE-----EEccCccccccEEEEeecCCcC-ccchhccCCCCCcEE
Q 045751          389 KLKKNSYLGRK-LTCGSHGFPKLKVLHLKSMLWLEEW-----TMGTGAMPKLECLIIDPCAYLK-RLPKQLWSVKRFKKL  461 (492)
Q Consensus       389 ~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L  461 (492)
                      ++.++...... +.....+++.|+.|.+++|..++..     ...-.++..|+.+.+++|+.+. ..-+.+..+++|+++
T Consensus       352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri  431 (483)
T KOG4341|consen  352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI  431 (483)
T ss_pred             cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence            88877643322 3333457888999999988666533     3334567789999999998775 344567788899999


Q ss_pred             EecCCCHHHHHHhcc
Q 045751          462 ELWRPQPELRQKLRD  476 (492)
Q Consensus       462 ~l~~c~~~~~~~~~~  476 (492)
                      ++.+|..-..+.+..
T Consensus       432 ~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  432 ELIDCQDVTKEAISR  446 (483)
T ss_pred             eeechhhhhhhhhHH
Confidence            999988555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.2e-10  Score=100.56  Aligned_cols=129  Identities=24%  Similarity=0.279  Sum_probs=39.3

Q ss_pred             cCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHh-hcccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVF-WEMNKLRHL  264 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L  264 (492)
                      +...++.|+|.+|.|+.+.. ++ .+.+|+.|++++|.|+.++ .+ ..+++|++|++++|.++.++..+ ..+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            44456777777777665432 43 4566777777777777664 34 66777777777777776665444 356777777


Q ss_pred             cccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC-cchhhHHHHhhcCCCCCeEEee
Q 045751          265 NFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS-NNQSLLSKSLYKLSSLESLKLV  339 (492)
Q Consensus       265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~L~~L~l~  339 (492)
                      ++++|.+..           +         ..+.. ++.+++|+.|++.+|.. .....-...+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~-----------l---------~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISD-----------L---------NELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---S-----------C---------CCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCC-----------h---------HHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777766531           1         11122 55666677777776631 1112223445556666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=4.5e-12  Score=123.38  Aligned_cols=171  Identities=21%  Similarity=0.224  Sum_probs=100.0

Q ss_pred             CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEE
Q 045751          162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTL  241 (492)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L  241 (492)
                      .....+++.|...     ..+..+..|-.|..+.|+.|.+..+|..++.+..|.+|+++.|++..+|..+ +.|+ |+.|
T Consensus        76 dt~~aDlsrNR~~-----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvl  148 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVL  148 (722)
T ss_pred             chhhhhccccccc-----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeE
Confidence            3344555555544     3445555566666667777777777777777777777777777777777776 5555 7777


Q ss_pred             ecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchh
Q 045751          242 DMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS  321 (492)
Q Consensus       242 ~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  321 (492)
                      -+++|+++.+|..++.+..|.+||.+.|.+ ..+|..                      ++++.+|+.|.++.|   ...
T Consensus       149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq----------------------l~~l~slr~l~vrRn---~l~  202 (722)
T KOG0532|consen  149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ----------------------LGYLTSLRDLNVRRN---HLE  202 (722)
T ss_pred             EEecCccccCCcccccchhHHHhhhhhhhh-hhchHH----------------------hhhHHHHHHHHHhhh---hhh
Confidence            777777777777777666777777776665 234444                      444444444444443   344


Q ss_pred             hHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccC
Q 045751          322 LLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTEL  371 (492)
Q Consensus       322 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l  371 (492)
                      .+|..+..+ .|..||++    |.++..+++.+.++ ..|++|-|.+|.+
T Consensus       203 ~lp~El~~L-pLi~lDfS----cNkis~iPv~fr~m-~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  203 DLPEELCSL-PLIRLDFS----CNKISYLPVDFRKM-RHLQVLQLENNPL  246 (722)
T ss_pred             hCCHHHhCC-ceeeeecc----cCceeecchhhhhh-hhheeeeeccCCC
Confidence            444444422 24444444    44555555555555 5555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=5.9e-10  Score=111.61  Aligned_cols=194  Identities=24%  Similarity=0.261  Sum_probs=126.0

Q ss_pred             EEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccc-ccCEEEccCCCCccCchhHHhcCCCccEEec
Q 045751          165 SLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLF-FLRYLKLNIPSLKSLPSSFLSSISNLYTLDM  243 (492)
Q Consensus       165 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L  243 (492)
                      .+.+..+...     .....+...+.+..|++.++.++.++.....+. +|+.|++++|.+..+|..+ +.+++|+.|++
T Consensus        97 ~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLR-----SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccc-----cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hcccccccccc
Confidence            4666666552     223444555889999999999998888888775 8999999999999988777 89999999999


Q ss_pred             CCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhH
Q 045751          244 PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLL  323 (492)
Q Consensus       244 ~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  323 (492)
                      ++|.+..+|...+.+++|+.|++++|.+. .+|..+.....|.                      +|.+++|   .....
T Consensus       171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~----------------------~l~~~~N---~~~~~  224 (394)
T COG4886         171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE----------------------ELDLSNN---SIIEL  224 (394)
T ss_pred             CCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh----------------------hhhhcCC---cceec
Confidence            99999999887778899999999988873 4444433333344                      4444443   12222


Q ss_pred             HHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751          324 SKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG  397 (492)
Q Consensus       324 ~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  397 (492)
                      +..+..+.++..+.+..    ..+..+.-.++.+ +++++|++++|.+.....  ++.+.+++.|+++++.+..
T Consensus       225 ~~~~~~~~~l~~l~l~~----n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         225 LSSLSNLKNLSGLELSN----NKLEDLPESIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             chhhhhcccccccccCC----ceeeeccchhccc-cccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            23333333333333221    1111111134455 667777777777644333  6777777777777766554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=6.9e-11  Score=108.90  Aligned_cols=238  Identities=20%  Similarity=0.186  Sum_probs=145.3

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCch-------hhccccccCEEEccCCCCc-c-
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLPS-------GIENLFFLRYLKLNIPSLK-S-  226 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~i~-~-  226 (492)
                      ...+..+++++|.+...........+.+.++|+..+++.--..    .+|+       .+..+++|++|+||+|-+. . 
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            7788999999998863334577888899999999999876321    4443       3446779999999999876 2 


Q ss_pred             ---CchhHHhcCCCccEEecCCCcccchHHH--------------hhcccccccccccccccCCCCCccccCCcccceee
Q 045751          227 ---LPSSFLSSISNLYTLDMPFSYIHHTADV--------------FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFIS  289 (492)
Q Consensus       227 ---lp~~~~~~l~~L~~L~L~~~~l~~lp~~--------------~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~  289 (492)
                         +-.-+ .++..|++|.|.+|.+......              +..-++|+.+..++|.+-..               
T Consensus       109 ~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---------------  172 (382)
T KOG1909|consen  109 IRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---------------  172 (382)
T ss_pred             hHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------------
Confidence               22334 7899999999999976543321              22334555555555544211               


Q ss_pred             cCCCCccchhhhCCCcccceEEeeecc--CcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe--ecCCCCCCceEEE
Q 045751          290 ALHPRCCTPDILGRLPNLRKLRIHGDL--SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL--DEYQFPPSLTHLS  365 (492)
Q Consensus       290 ~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~  365 (492)
                         ........++..+.|+.+.+..|.  ......+...+..+++|+.|||..+. +..--...+  .+..+ ++|+.|+
T Consensus       173 ---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~-~~L~El~  247 (382)
T KOG1909|consen  173 ---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW-PHLRELN  247 (382)
T ss_pred             ---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc-chheeec
Confidence               111222334555556666665554  12223444555566666666665311 000000000  23344 6788888


Q ss_pred             EecccCCCCCcccc-----cCCCccCeEEEeccccCCCc---ccccCCCCccccEEeeccc
Q 045751          366 FSNTELMEDPMPTL-----EKLPLLQVLKLKKNSYLGRK---LTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       366 L~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~  418 (492)
                      +++|.+.......+     ...|.|+.|.+.+|.++...   +.......|.|+.|.|++|
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            88888765544333     25788888888888776432   2223455788889999888

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=2.3e-10  Score=103.19  Aligned_cols=202  Identities=18%  Similarity=0.159  Sum_probs=114.1

Q ss_pred             CCCeeEEEeecCCCCCCCchh----HHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch------
Q 045751          160 NLYLHSLLCLSSESHHLDPLD----CEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS------  229 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~------  229 (492)
                      +.+|..|.+++.......+.+    .+-.+.-+++|..+.++.|.-..+-.-...=+.|+++.++++.+...|.      
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~  260 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI  260 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence            788888888876554322222    2223345677778888877644333322233567788777765543221      


Q ss_pred             ------------------hHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751          230 ------------------SFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL  291 (492)
Q Consensus       230 ------------------~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~  291 (492)
                                        .+ ..++.|+.+||++|.++.+..++.-+|+++.|++++|.+.                   
T Consensus       261 ~~D~~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-------------------  320 (490)
T KOG1259|consen  261 LADPSGSEPSTSNGSALVSA-DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-------------------  320 (490)
T ss_pred             hcCccCCCCCccCCceEEec-chHhhhhhccccccchhhhhhhhhhccceeEEecccccee-------------------
Confidence                              11 2345577777777777766666666677777777766542                   


Q ss_pred             CCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccC
Q 045751          292 HPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTEL  371 (492)
Q Consensus       292 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l  371 (492)
                          .+.. ++.+++|+.|++++|   ....+..                           |-.++ -++++|.|++|.+
T Consensus       321 ----~v~n-La~L~~L~~LDLS~N---~Ls~~~G---------------------------wh~KL-GNIKtL~La~N~i  364 (490)
T KOG1259|consen  321 ----TVQN-LAELPQLQLLDLSGN---LLAECVG---------------------------WHLKL-GNIKTLKLAQNKI  364 (490)
T ss_pred             ----eehh-hhhcccceEeecccc---hhHhhhh---------------------------hHhhh-cCEeeeehhhhhH
Confidence                1222 666677777777776   2222222                           22334 5566666666654


Q ss_pred             CCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751          372 MEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML  419 (492)
Q Consensus       372 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  419 (492)
                        +....++++-+|..|++.+|++....-...++++|.|+.|.+.+|+
T Consensus       365 --E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  365 --ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             --hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence              2233455566666666666665443334445556666666665553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=5.1e-10  Score=96.63  Aligned_cols=106  Identities=20%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      +.+++.|++.++.+.     .+ ..+. .+.+|++|++++|.++.++. +..+++|+.|++++|.|+.+++.+...+++|
T Consensus        18 ~~~~~~L~L~~n~I~-----~I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-----TI-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccc-----cc-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            556788888888875     22 2333 57788899999998887753 7778889999999999988876653468899


Q ss_pred             cEEecCCCcccchH--HHhhcccccccccccccccC
Q 045751          239 YTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       239 ~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~  272 (492)
                      ++|++++|.+..+.  ..+..+++|+.|++.+|.+.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99999988665443  33677888888888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.4e-10  Score=109.76  Aligned_cols=206  Identities=18%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC---CCchhhccccccCEEEccCCCCccCchh-HHhcC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS---QLPSGIENLFFLRYLKLNIPSLKSLPSS-FLSSI  235 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~~l  235 (492)
                      .++||.+.+.++....   -........|++++.|||+.|-+.   .+-.-...+++|+.|+++.|++....++ .-..+
T Consensus       120 ~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             HHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            7788888888877652   011146677888888888888765   2334456788888888888877633222 11357


Q ss_pred             CCccEEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEee
Q 045751          236 SNLYTLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIH  313 (492)
Q Consensus       236 ~~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~  313 (492)
                      ++|+.|.++.|.+  ..+-.....+|+|+.|++..|...  +..                   ... ...+..|+.|+++
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~-------------------~~~-~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIK-------------------ATS-TKILQTLQELDLS  254 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--cee-------------------cch-hhhhhHHhhcccc
Confidence            7888888888855  344444566778888888777421  000                   001 3445678888888


Q ss_pred             eccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-------ecCCCCCCceEEEEecccCCCC-CcccccCCCcc
Q 045751          314 GDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-------DEYQFPPSLTHLSFSNTELMED-PMPTLEKLPLL  385 (492)
Q Consensus       314 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-------~~~~lp~~L~~L~L~~~~l~~~-~~~~l~~l~~L  385 (492)
                      +|. .........++.++.|+.|+++.    ..+.++..       ....+ ++|++|++..|.+.++ ....+..+++|
T Consensus       255 ~N~-li~~~~~~~~~~l~~L~~Lnls~----tgi~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  255 NNN-LIDFDQGYKVGTLPGLNQLNLSS----TGIASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             CCc-ccccccccccccccchhhhhccc----cCcchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchh
Confidence            873 11111123455566666666653    12222211       11234 5566666666655332 22334445555


Q ss_pred             CeEEEeccccC
Q 045751          386 QVLKLKKNSYL  396 (492)
Q Consensus       386 ~~L~l~~~~~~  396 (492)
                      +.|.+..|.+.
T Consensus       329 k~l~~~~n~ln  339 (505)
T KOG3207|consen  329 KHLRITLNYLN  339 (505)
T ss_pred             hhhhccccccc
Confidence            55555544443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=5.7e-11  Score=107.00  Aligned_cols=182  Identities=22%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             CccEEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeee
Q 045751          237 NLYTLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHG  314 (492)
Q Consensus       237 ~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~  314 (492)
                      .||+|||+...+  ..+...++++.+|+.|.+.++.+...+...                      +++-.+|+.|+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~----------------------iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT----------------------IAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH----------------------Hhccccceeecccc
Confidence            478888888755  344555777888888877777764444333                      33344444444444


Q ss_pred             ccCcchhhHHHHhhcCCCCCeEEeec-CCCCCCccEEEeecCCCCCCceEEEEeccc--CCCCCcccc-cCCCccCeEEE
Q 045751          315 DLSNNQSLLSKSLYKLSSLESLKLVN-ESKMPRLSKIVLDEYQFPPSLTHLSFSNTE--LMEDPMPTL-EKLPLLQVLKL  390 (492)
Q Consensus       315 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~l  390 (492)
                      |.......+.-.+.+|+.|.+|+++| +..-+..+.   .+....++|+.|+|+++.  +.......+ ..+|+|..|+|
T Consensus       244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL  320 (419)
T KOG2120|consen  244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL  320 (419)
T ss_pred             ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence            42222222233344444445555444 110000000   111112555666666554  111222222 35666666666


Q ss_pred             eccccCCCcccccCCCCccccEEeecccCCcc-eEEEccCccccccEEEEeecC
Q 045751          391 KKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-EWTMGTGAMPKLECLIIDPCA  443 (492)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~  443 (492)
                      ++|..........+..|+.|++|.++.|..+. +--..+...|+|..|++.+|-
T Consensus       321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            65543332333334556666666666665443 112235566666666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.80  E-value=2.9e-10  Score=111.03  Aligned_cols=171  Identities=22%  Similarity=0.185  Sum_probs=133.8

Q ss_pred             EEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCC
Q 045751          145 TANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPS  223 (492)
Q Consensus       145 sl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~  223 (492)
                      .+.-+...+++.+.- +..|.++.+..|.+.     ..+..+.++..|.+|+|+.|.+..+|..++.|+ |+.|-+++|+
T Consensus        81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   81 DLSRNRFSELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hccccccccCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            333244445554444 889999999999886     678889999999999999999999999888775 9999999999


Q ss_pred             CccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhh
Q 045751          224 LKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDIL  301 (492)
Q Consensus       224 i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l  301 (492)
                      ++.+|..+ +.+..|..||.+.|.+..+|..++.+.+|+.|++..|++ ..+|..++.| .|..|+++.  ...++.. |
T Consensus       155 l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El~~L-pLi~lDfScNkis~iPv~-f  230 (722)
T KOG0532|consen  155 LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSL-PLIRLDFSCNKISYLPVD-F  230 (722)
T ss_pred             cccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCC-ceeeeecccCceeecchh-h
Confidence            99999999 999999999999999999999999999999999999987 4667666643 355566652  3334444 6


Q ss_pred             CCCcccceEEeeeccCcchhhHHHHhh
Q 045751          302 GRLPNLRKLRIHGDLSNNQSLLSKSLY  328 (492)
Q Consensus       302 ~~l~~L~~L~l~~~~~~~~~~~~~~l~  328 (492)
                      .+|+.|++|-+.+|   ....-|+.+.
T Consensus       231 r~m~~Lq~l~LenN---PLqSPPAqIC  254 (722)
T KOG0532|consen  231 RKMRHLQVLQLENN---PLQSPPAQIC  254 (722)
T ss_pred             hhhhhheeeeeccC---CCCCChHHHH
Confidence            77777777777665   4444555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=4.5e-09  Score=105.27  Aligned_cols=148  Identities=25%  Similarity=0.289  Sum_probs=112.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCC-cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFK-FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .+.+..|.+.++.+.     ..+.....++ +|+.|++++|.+..+|..++.+++|+.|++++|.+.++|... +.+++|
T Consensus       115 ~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L  188 (394)
T COG4886         115 LTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNL  188 (394)
T ss_pred             ccceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhh
Confidence            578999999999886     3445555664 999999999999999888999999999999999999999887 799999


Q ss_pred             cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC-cc-chhhhCCCcccceEEeeec
Q 045751          239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR-CC-TPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~-~~-~~~~l~~l~~L~~L~l~~~  315 (492)
                      +.|++++|.+..+|..+.....|+.+.+++|.. ...+..+.++.++..+.+.+.. .. +.. ++.+++++.|++++|
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n  265 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN  265 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccch-hccccccceeccccc
Confidence            999999999999999777778899999999853 2444455555555555443211 11 222 555555666666555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=9e-09  Score=72.99  Aligned_cols=59  Identities=32%  Similarity=0.423  Sum_probs=40.4

Q ss_pred             CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc
Q 045751          189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY  247 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~  247 (492)
                      ++|++|++++|.++.+| ..|..+++|++|++++|.+..+++..|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45667777777776665 455667777777777777776666666777777777777664

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3e-10  Score=102.42  Aligned_cols=161  Identities=19%  Similarity=0.182  Sum_probs=123.7

Q ss_pred             hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe--ecCCCCCCceEEEEecccCCCCCccc
Q 045751          301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL--DEYQFPPSLTHLSFSNTELMEDPMPT  378 (492)
Q Consensus       301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~  378 (492)
                      +..|.+|+.|.+.++  ...+.+...+++-.+|+.|+++   .|..+..-.+  .+.+| ..|.+|+|+.|.+..+....
T Consensus       206 Ls~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnls---m~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv  279 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLS---MCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTV  279 (419)
T ss_pred             HHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccc---cccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhH
Confidence            788999999999998  6778888899999999999999   4666665443  56788 99999999999876554433


Q ss_pred             c-c-CCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcce-EEEccCccccccEEEEeecCCcCccch---
Q 045751          379 L-E-KLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLEE-WTMGTGAMPKLECLIIDPCAYLKRLPK---  450 (492)
Q Consensus       379 l-~-~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~lp~---  450 (492)
                      + . --++|..|+++|+.  +....+......+|+|..|+|++|..++. ....+..++.|+.|.++.|..+.  |.   
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~  357 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLL  357 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHee
Confidence            2 2 34789999999874  22222223346799999999999987773 33456789999999999998553  43   


Q ss_pred             hccCCCCCcEEEecCCCHH
Q 045751          451 QLWSVKRFKKLELWRPQPE  469 (492)
Q Consensus       451 ~l~~l~~L~~L~l~~c~~~  469 (492)
                      .+...|+|.+|++.||-.+
T Consensus       358 ~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eeccCcceEEEEeccccCc
Confidence            3578899999999998644

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.68  E-value=5.7e-09  Score=99.72  Aligned_cols=68  Identities=28%  Similarity=0.439  Sum_probs=57.3

Q ss_pred             HHHHHHhhcccCChhhHHHHHhhhcccch------------------------HHHHHHHHhhhcccccccccce-----
Q 045751            4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI------------------------EIVTSLLRDYECEIAGHLVNII-----   54 (492)
Q Consensus         4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~------------------------~i~~~l~~sy~~~l~~~~k~~~-----   54 (492)
                      +.++++|+++|+|+|||++++|+.|+.+.                        .++.++..||+. +|++.|+||     
T Consensus       182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~-L~~~~~~~f~~L~~  260 (287)
T PF00931_consen  182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDS-LPDELRRCFLYLSI  260 (287)
T ss_dssp             CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHS-SHTCCHHHHHHGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhc-CCccHHHHHhhCcC
Confidence            56899999999999999999999996532                        478889999995 888888775     


Q ss_pred             -----eecHHHHHHHHHHhCCCC
Q 045751           55 -----VEEEEMIYQLWIAEGFIP   72 (492)
Q Consensus        55 -----~~~~~~Li~~wia~gf~~   72 (492)
                           .|+++.++++|+++||+.
T Consensus       261 f~~~~~i~~~~li~lW~~e~~i~  283 (287)
T PF00931_consen  261 FPEGVPIPRERLIRLWVAEGFIS  283 (287)
T ss_dssp             SGTTS-EEHHHHHHHHTT-HHTC
T ss_pred             CCCCceECHHHHHHHHHHCCCCc
Confidence                 689999999999999986

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.66  E-value=2.6e-09  Score=100.80  Aligned_cols=299  Identities=16%  Similarity=0.102  Sum_probs=188.0

Q ss_pred             CCeeEEEEecCCC-Cccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc-CC-CCch-hhccc
Q 045751          139 KMIKRLTANVNLS-ELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV-LS-QLPS-GIENL  211 (492)
Q Consensus       139 ~~~r~lsl~~~~~-~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~-~l~~-~~~~l  211 (492)
                      ..++.+++.+... .......+   +|+++.|.+.++...  ++......-..++.|+.|++..|. ++ .... -...+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            4567788773222 12222233   999999999988754  344556666889999999999965 65 2223 34578


Q ss_pred             cccCEEEccCCC-Cc--cCchhHHhcCCCccEEecCCCc---ccchHHHhhcccccccccccccccCCCCCccccCCccc
Q 045751          212 FFLRYLKLNIPS-LK--SLPSSFLSSISNLYTLDMPFSY---IHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL  285 (492)
Q Consensus       212 ~~L~~L~l~~~~-i~--~lp~~~~~~l~~L~~L~L~~~~---l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L  285 (492)
                      ++|.||+++++. |.  .+..-. .++..++.+.+++|.   +..+-..-..+.-+..+++.+|...             
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l-------------  281 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL-------------  281 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc-------------
Confidence            999999999873 44  333333 778889999888882   2222222233444555555555321             


Q ss_pred             ceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecC-CCCCCceE
Q 045751          286 NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEY-QFPPSLTH  363 (492)
Q Consensus       286 ~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~  363 (492)
                             +......+-..+..|+.|+.+++.+.....+.+--.++.+|+.|.+.   +|.++..-.+ .++ ++ +.|+.
T Consensus       282 -------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~---~c~~fsd~~ft~l~rn~-~~Le~  350 (483)
T KOG4341|consen  282 -------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS---GCQQFSDRGFTMLGRNC-PHLER  350 (483)
T ss_pred             -------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc---ccchhhhhhhhhhhcCC-hhhhh
Confidence                   11111121455677888888887532222233334566888888887   4665443332 222 45 78899


Q ss_pred             EEEecccCCC-C-CcccccCCCccCeEEEeccccC-CCc---ccccCCCCccccEEeecccCCcceE-EEccCccccccE
Q 045751          364 LSFSNTELME-D-PMPTLEKLPLLQVLKLKKNSYL-GRK---LTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLEC  436 (492)
Q Consensus       364 L~L~~~~l~~-~-~~~~l~~l~~L~~L~l~~~~~~-~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~  436 (492)
                      +++..|...- . ....-.+++.|+.|.+++|... ++.   +.....+...|+.+.+++|+.+++- -..+..+++|+.
T Consensus       351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            9998887422 2 2223358999999999988643 331   1222356778999999999888733 234678899999


Q ss_pred             EEEeecCCcCc--cchhccCCCCCcEEEec
Q 045751          437 LIIDPCAYLKR--LPKQLWSVKRFKKLELW  464 (492)
Q Consensus       437 L~l~~c~~l~~--lp~~l~~l~~L~~L~l~  464 (492)
                      +++.+|.....  +...-.++|+++.....
T Consensus       431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  431 IELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             eeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            99999987763  33344677887776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=8.2e-09  Score=73.18  Aligned_cols=60  Identities=27%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccccccc
Q 045751          212 FFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       212 ~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~  271 (492)
                      ++|++|++++|.+..+|...|.++++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            479999999999999998888999999999999999988875 589999999999999864

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=5.8e-09  Score=94.35  Aligned_cols=104  Identities=18%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      .|.+|.|+++.|.+.     .. ..++.+++|..|||++|.++.+...-.++-|.+.|.++.|.|+.+. .+ +++.+|.
T Consensus       306 ~Pkir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL-~KLYSLv  377 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GL-RKLYSLV  377 (490)
T ss_pred             ccceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hh-Hhhhhhe
Confidence            445555555544443     11 1244444555555555544443333334444445555555444442 23 4555555


Q ss_pred             EEecCCCcccchH--HHhhccccccccccccccc
Q 045751          240 TLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       240 ~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~  271 (492)
                      .||+++|++..+.  .+|+++|.|+++.|.+|.+
T Consensus       378 nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  378 NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            5555555554443  2355555555555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=7.4e-08  Score=101.37  Aligned_cols=90  Identities=24%  Similarity=0.375  Sum_probs=66.7

Q ss_pred             EEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhccccccccccc
Q 045751          191 LRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFG  267 (492)
Q Consensus       191 L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~  267 (492)
                      ++.|+|++|.++ .+|..++.+++|+.|+|++|.+. .+|..+ +.+++|+.|+|++|.+. .+|..++++++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            677777777776 67777777777777777777776 677766 77777777777777664 567777777777777777


Q ss_pred             ccccCCCCCccccC
Q 045751          268 LFTLPAYPRNDCGS  281 (492)
Q Consensus       268 ~~~~~~~~p~~~~~  281 (492)
                      +|.+.+.+|..++.
T Consensus       499 ~N~l~g~iP~~l~~  512 (623)
T PLN03150        499 GNSLSGRVPAALGG  512 (623)
T ss_pred             CCcccccCChHHhh
Confidence            77777777766554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.55  E-value=1.3e-08  Score=90.93  Aligned_cols=249  Identities=17%  Similarity=0.147  Sum_probs=134.7

Q ss_pred             ccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCc----cCchhH------HhcCCCccEEecCCCcc--
Q 045751          186 KMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLK----SLPSSF------LSSISNLYTLDMPFSYI--  248 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~----~lp~~~------~~~l~~L~~L~L~~~~l--  248 (492)
                      ..+..+..++|+||.|.     .+...|.+-.+|+.-+++.-...    ++++.+      .-+|++|+..+||+|.+  
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            34556666666666554     23344444555665555542111    333322      14667777777777733  


Q ss_pred             ---cchHHHhhcccccccccccccccCCCCCccccC-CcccceeecCCCCccchhhhCCCcccceEEeeecc-C-cchhh
Q 045751          249 ---HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL-S-NNQSL  322 (492)
Q Consensus       249 ---~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-~~~~~  322 (492)
                         ..+-+.|++-+.|.||.+++|.+....-..+++ +..|-..         .. .+.-+.|+...+..|+ . .....
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n---------KK-aa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN---------KK-AADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH---------hh-hccCCCceEEEeccchhccCcHHH
Confidence               122244666677777777777652211122222 1111111         11 4455667777666664 1 12222


Q ss_pred             HHHHhhcCCCCCeEEeecCC-CCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcc----cccCCCccCeEEEeccccC
Q 045751          323 LSKSLYKLSSLESLKLVNES-KMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMP----TLEKLPLLQVLKLKKNSYL  396 (492)
Q Consensus       323 ~~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~  396 (492)
                      ....+.+-.+|+.+.+..+. .+..+..|-. .+..+ .+|+.|+|..|.++.....    .+..++.|+.|.+..|-++
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            22334444566777666532 1111111111 23345 8899999999987654433    3457888999999888776


Q ss_pred             CCcccc-----cCCCCccccEEeecccCCcce-EE------EccCccccccEEEEeecCCc
Q 045751          397 GRKLTC-----GSHGFPKLKVLHLKSMLWLEE-WT------MGTGAMPKLECLIIDPCAYL  445 (492)
Q Consensus       397 ~~~~~~-----~~~~~~~L~~L~l~~~~~l~~-l~------~~~~~l~~L~~L~l~~c~~l  445 (492)
                      ......     .-..+|+|..|...+|..-.. +.      ..-+++|-|..|.+++|...
T Consensus       256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            554221     123578888888888743222 21      12368899999999988754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=9.7e-08  Score=86.50  Aligned_cols=87  Identities=21%  Similarity=0.168  Sum_probs=45.4

Q ss_pred             HhccCCcEEEEEecCCcCC---CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC--cccchHHHhhcc
Q 045751          184 ICKMFKFLRVLDLGSLVLS---QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS--YIHHTADVFWEM  258 (492)
Q Consensus       184 ~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~--~l~~lp~~~~~l  258 (492)
                      +-..+.+++.|||.+|.|+   .+..-+.++++|++|+++.|.+...-...-..+.+|++|-|.++  .++.....+..+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            3345555666666666555   22233345666666666665544111111013456666666665  334444556666


Q ss_pred             cccccccccccc
Q 045751          259 NKLRHLNFGLFT  270 (492)
Q Consensus       259 ~~L~~L~L~~~~  270 (492)
                      |.++.|+++.|.
T Consensus       146 P~vtelHmS~N~  157 (418)
T KOG2982|consen  146 PKVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhhccch
Confidence            677777666664

>PLN03150 hypothetical protein; Provisional

Probab=98.47  E-value=3.4e-07  Score=96.44  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=90.7

Q ss_pred             CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCCcc
Q 045751          162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLY  239 (492)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~  239 (492)
                      .++.|++.++...    ...+..+.++++|+.|+|++|.+. .+|..++.+++|++|++++|.+. .+|..+ +++++|+
T Consensus       419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCC
Confidence            4888999988775    255677899999999999999998 89999999999999999999999 889888 9999999


Q ss_pred             EEecCCCcc-cchHHHhhcc-cccccccccccccC
Q 045751          240 TLDMPFSYI-HHTADVFWEM-NKLRHLNFGLFTLP  272 (492)
Q Consensus       240 ~L~L~~~~l-~~lp~~~~~l-~~L~~L~L~~~~~~  272 (492)
                      +|++++|.+ ..+|..++.+ .++..+++.+|...
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            999999977 4788877764 46777888877543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=2.9e-08  Score=99.74  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751          183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR  262 (492)
Q Consensus       183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~  262 (492)
                      ..+..+++|..|++.+|.|..+...+..+++|++|++++|.|+.+.. + ..++.|+.|++++|.+..+.. +..+++|+
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~  165 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLK  165 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhh
Confidence            33556666777777777666555545666677777777777766643 2 466667777777776665543 45566666


Q ss_pred             cccccccccC
Q 045751          263 HLNFGLFTLP  272 (492)
Q Consensus       263 ~L~L~~~~~~  272 (492)
                      .+++++|.+.
T Consensus       166 ~l~l~~n~i~  175 (414)
T KOG0531|consen  166 LLDLSYNRIV  175 (414)
T ss_pred             cccCCcchhh
Confidence            6666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.35  E-value=4.1e-08  Score=98.64  Aligned_cols=243  Identities=23%  Similarity=0.269  Sum_probs=134.9

Q ss_pred             ccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccc
Q 045751          186 KMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLN  265 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~  265 (492)
                      ..+..++.+.+..+.+...-..++.+++|+.|++.+|.|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~  146 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN  146 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhhe
Confidence            4556666777888887775566788999999999999999887756 889999999999999988865 78888899999


Q ss_pred             ccccccCCCCCccccCCcccceeecCCCCccchhh--hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCC
Q 045751          266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDI--LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESK  343 (492)
Q Consensus       266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  343 (492)
                      +++|.+..  ..++..+..|+.+++++.....-+.  +..+.+++.+.+.+|......    .+..+..+..+++..   
T Consensus       147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~---  217 (414)
T KOG0531|consen  147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLD---  217 (414)
T ss_pred             eccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhccc---
Confidence            99998742  2223335555555555322222221  244555555666555210000    011111111111110   


Q ss_pred             CCCccEEEeecCCCCCC--ceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCc
Q 045751          344 MPRLSKIVLDEYQFPPS--LTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWL  421 (492)
Q Consensus       344 ~~~L~~L~l~~~~lp~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  421 (492)
                       ..+..+. .+..+ ..  |+.+++.++.+.. .+..+..++.+..|++..+.+....   .....+.+..+....+...
T Consensus       218 -n~i~~~~-~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  218 -NKISKLE-GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             -ccceecc-Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc---cccccchHHHhccCcchhc
Confidence             1111100 11111 22  6666776666522 2244556666666766666554322   1233444444444444222


Q ss_pred             ce---EE-EccCccccccEEEEeecCCcC
Q 045751          422 EE---WT-MGTGAMPKLECLIIDPCAYLK  446 (492)
Q Consensus       422 ~~---l~-~~~~~l~~L~~L~l~~c~~l~  446 (492)
                      ..   .. ......+.++...+.+++.-.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  291 LSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             chhhhhccccccccccccccccccCcccc
Confidence            11   11 114456666666666665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=6.1e-07  Score=81.44  Aligned_cols=83  Identities=17%  Similarity=0.255  Sum_probs=44.9

Q ss_pred             CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE--ccCccccccEEEEeecCCcCccch------hcc
Q 045751          382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM--GTGAMPKLECLIIDPCAYLKRLPK------QLW  453 (492)
Q Consensus       382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp~------~l~  453 (492)
                      +|++..+.+..|.+....-......+|.+-.|.|+.+ ++.+|..  .+..+|.|..|.+.++|....+..      .++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            4566666666555444333333445555656666654 5554432  345666666666666665543322      246


Q ss_pred             CCCCCcEEEecC
Q 045751          454 SVKRFKKLELWR  465 (492)
Q Consensus       454 ~l~~L~~L~l~~  465 (492)
                      ++++++.|+-+.
T Consensus       277 RL~~v~vLNGsk  288 (418)
T KOG2982|consen  277 RLTKVQVLNGSK  288 (418)
T ss_pred             eccceEEecCcc
Confidence            666666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=2.1e-06  Score=55.82  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             ccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch
Q 045751          213 FLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT  251 (492)
Q Consensus       213 ~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l  251 (492)
                      +|++|++++|+|+++|+.+ ++|++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence            4455555555555554444 5555555555555544443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=2.8e-06  Score=55.21  Aligned_cols=41  Identities=29%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch
Q 045751          189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS  229 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~  229 (492)
                      ++|++|++++|.|+.+|+.+++|++|++|++++|.|++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46788888888888888778888888888888888876653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=1.6e-06  Score=91.34  Aligned_cols=108  Identities=23%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccC--chhHHhcCCC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSL--PSSFLSSISN  237 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l--p~~~~~~l~~  237 (492)
                      +|.|++|.+.+-...   .+.....+.++++|+.||+++++++.+ ..++.|++|+.|.+++-.+..-  -..+ -+|++
T Consensus       147 LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~  221 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK  221 (699)
T ss_pred             CcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence            677777777765543   223455666777777777777776655 5566777777777766555521  1233 46777


Q ss_pred             ccEEecCCCcccchH---HH----hhcccccccccccccccC
Q 045751          238 LYTLDMPFSYIHHTA---DV----FWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       238 L~~L~L~~~~l~~lp---~~----~~~l~~L~~L~L~~~~~~  272 (492)
                      |++||+|......-+   ..    -..+|+|+.||.|++.+.
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777777666222111   10    123555666655555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.00  E-value=5.6e-07  Score=90.93  Aligned_cols=196  Identities=24%  Similarity=0.216  Sum_probs=96.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccc-ccCEEEccCCCCc-----------cC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLF-FLRYLKLNIPSLK-----------SL  227 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~i~-----------~l  227 (492)
                      .+++..|.+-.....+   ..-+-.+..++.||+|.|.+|.+...- .+..+. .|+.|-- .+.+.           ++
T Consensus        83 lqkt~~lkl~~~pa~~---pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARD---PTEPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLIC-HNSLDALRHVFASCGGDI  157 (1096)
T ss_pred             HhhheeeeecccCCCC---CCCCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhh-hccHHHHHHHHHHhcccc
Confidence            5666666665554431   111455677899999999999875311 111111 1222211 11111           11


Q ss_pred             chhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCccc
Q 045751          228 PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL  307 (492)
Q Consensus       228 p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L  307 (492)
                      ..+.  .+..|.+-+.++|.+..+..++.-++.|++|+|++|++..                       ... +..++.|
T Consensus       158 ~ns~--~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-----------------------v~~-Lr~l~~L  211 (1096)
T KOG1859|consen  158 SNSP--VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-----------------------VDN-LRRLPKL  211 (1096)
T ss_pred             ccch--hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-----------------------hHH-HHhcccc
Confidence            1110  1234555566666665555556666666666666665421                       111 4455555


Q ss_pred             ceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC-CCcccccCCCcc
Q 045751          308 RKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME-DPMPTLEKLPLL  385 (492)
Q Consensus       308 ~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~-~~~~~l~~l~~L  385 (492)
                      ++|+++.|   ....+|.. -..+ +|..|.+++    ..|++|. .+.++ .+|+.|++++|-+.+ .....++.|..|
T Consensus       212 khLDlsyN---~L~~vp~l~~~gc-~L~~L~lrn----N~l~tL~-gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  212 KHLDLSYN---CLRHVPQLSMVGC-KLQLLNLRN----NALTTLR-GIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             cccccccc---hhccccccchhhh-hheeeeecc----cHHHhhh-hHHhh-hhhhccchhHhhhhcchhhhHHHHHHHH
Confidence            55555554   11222211 0111 144444432    1122211 45556 777777777777644 233455667778


Q ss_pred             CeEEEeccccC
Q 045751          386 QVLKLKKNSYL  396 (492)
Q Consensus       386 ~~L~l~~~~~~  396 (492)
                      +.|.|.||.+-
T Consensus       282 ~~L~LeGNPl~  292 (1096)
T KOG1859|consen  282 IVLWLEGNPLC  292 (1096)
T ss_pred             HHHhhcCCccc
Confidence            88888877653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=4.7e-06  Score=87.79  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=98.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISN  237 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~  237 (492)
                      -.+|+.|++.+....  +..++...-..+|.|+.|.+.+-.+.  .+..-..++++|+.||+++++++.+ .++ ++|++
T Consensus       121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN  196 (699)
T ss_pred             HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence            678888888886554  45577777788999999999998765  3344456889999999999999988 778 99999


Q ss_pred             ccEEecCCCcccchH--HHhhcccccccccccccccCCCC--Ccc---cc-CCcccceeecCC
Q 045751          238 LYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYP--RND---CG-SLENLNFISALH  292 (492)
Q Consensus       238 L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~--p~~---~~-~l~~L~~l~~~~  292 (492)
                      |+.|.+++=.+..-.  ..+.+|++|+.||+|........  ...   .+ .|++|+.|++++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            999999887554432  34889999999999976543211  111   11 189999999985

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=2.9e-07  Score=92.92  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751          183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR  262 (492)
Q Consensus       183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~  262 (492)
                      ..+.-+++|+.|+|+.|+++... .+..|++|++||+++|.+..+|.---..+. |+.|.+++|.++.+-. +.++.+|+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-ie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-IENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-HHhhhhhh
Confidence            34444555555566655555433 455555566666666555555432101222 5556666655555532 55566666


Q ss_pred             ccccccccc
Q 045751          263 HLNFGLFTL  271 (492)
Q Consensus       263 ~L~L~~~~~  271 (492)
                      .||+++|-+
T Consensus       258 ~LDlsyNll  266 (1096)
T KOG1859|consen  258 GLDLSYNLL  266 (1096)
T ss_pred             ccchhHhhh
Confidence            666655544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=5.7e-06  Score=74.35  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=79.0

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCc-------hhhccccccCEEEccCCCCc-cC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLP-------SGIENLFFLRYLKLNIPSLK-SL  227 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~l~~L~~L~l~~~~i~-~l  227 (492)
                      ...+..+++++|.+...........+.+-++|++.+++.--..    .++       +.+-+|++|+..+|++|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            7788899999998864344567788888999999998865322    233       44567899999999999887 55


Q ss_pred             chhH---HhcCCCccEEecCCCcccchHHH-h-------------hccccccccccccccc
Q 045751          228 PSSF---LSSISNLYTLDMPFSYIHHTADV-F-------------WEMNKLRHLNFGLFTL  271 (492)
Q Consensus       228 p~~~---~~~l~~L~~L~L~~~~l~~lp~~-~-------------~~l~~L~~L~L~~~~~  271 (492)
                      |+.+   .++-..|++|.+++|.++.+..+ |             .+-|.|+......|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            5432   26778999999999966544321 2             2345666666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=5.5e-06  Score=66.74  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             HHhccCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccc
Q 045751          183 KICKMFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL  261 (492)
Q Consensus       183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L  261 (492)
                      ..+.+..+|...+|++|.++.+|+.|. +.+.++.|++++|.|.++|.++ ..++.|+.|+++.|.+...|.-+..+.+|
T Consensus        47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l  125 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKL  125 (177)
T ss_pred             HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhH
Confidence            344555666666777777776666553 3346667777777777777765 77777777777777666666666666666


Q ss_pred             cccccccccc
Q 045751          262 RHLNFGLFTL  271 (492)
Q Consensus       262 ~~L~L~~~~~  271 (492)
                      -.|+..+|..
T Consensus       126 ~~Lds~~na~  135 (177)
T KOG4579|consen  126 DMLDSPENAR  135 (177)
T ss_pred             HHhcCCCCcc
Confidence            6666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=1.9e-05  Score=76.95  Aligned_cols=158  Identities=19%  Similarity=0.170  Sum_probs=91.8

Q ss_pred             HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCC-CCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccc
Q 045751          183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIP-SLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNK  260 (492)
Q Consensus       183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~  260 (492)
                      .-+..+++++.|++++|.++.+|. +  ..+|+.|.+++| .++.+|..+   ..+|+.|++++| .+..+|..      
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------  113 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------  113 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------
Confidence            345667999999999999988883 2  237999999874 566888655   368999999999 77777754      


Q ss_pred             ccccccccccc--CCCCCccccCCcccceeecCCCC-ccchhhhC--CCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751          261 LRHLNFGLFTL--PAYPRNDCGSLENLNFISALHPR-CCTPDILG--RLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES  335 (492)
Q Consensus       261 L~~L~L~~~~~--~~~~p~~~~~l~~L~~l~~~~~~-~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  335 (492)
                      |+.|++..+..  .+.+|.+      |+.|.+.+.. ..... +.  -.++|+.|++.+|.   ...+|..+.  .+|+.
T Consensus       114 Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~  181 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQAR-IDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQS  181 (426)
T ss_pred             cceEEeCCCCCcccccCcch------Hhheeccccccccccc-cccccCCcccEEEecCCC---cccCccccc--ccCcE
Confidence            55565654432  2345554      3344432100 00000 11  12478888888773   112232222  46666


Q ss_pred             EEeecCCCCCCccEEEeecCCCCCCceEEEEecc
Q 045751          336 LKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNT  369 (492)
Q Consensus       336 L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~  369 (492)
                      |.++.    .....+.+....+|+++ .|++.+|
T Consensus       182 L~ls~----n~~~sLeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        182 ITLHI----EQKTTWNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             EEecc----cccccccCccccccccc-Eechhhh
Confidence            76652    11222222344555556 6666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=8.6e-06  Score=65.67  Aligned_cols=108  Identities=18%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccE
Q 045751          161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYT  240 (492)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~  240 (492)
                      .+|.+.++++|...    +++..+-.+++.+..|++++|.++.+|..+..++.|+.|+++.|.+...|.-+ ..+.+|-.
T Consensus        53 ~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~  127 (177)
T KOG4579|consen   53 YELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDM  127 (177)
T ss_pred             ceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHH
Confidence            45556667777665    35566667788888899999999889988888999999999999999888888 55888888


Q ss_pred             EecCCCcccchHHHhhcccccccccccccccCC
Q 045751          241 LDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA  273 (492)
Q Consensus       241 L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~  273 (492)
                      ||..++....+|-.+..-...-..++.++.+.+
T Consensus       128 Lds~~na~~eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  128 LDSPENARAEIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             hcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence            998888777777553322222223444444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.73  E-value=9.3e-06  Score=83.56  Aligned_cols=243  Identities=21%  Similarity=0.178  Sum_probs=128.5

Q ss_pred             HHHHhccCCcEEEEEecCCc-CCC--CchhhccccccCEEEccCC--CCccCc---hhHHhcCCCccEEecCCCc-ccch
Q 045751          181 CEKICKMFKFLRVLDLGSLV-LSQ--LPSGIENLFFLRYLKLNIP--SLKSLP---SSFLSSISNLYTLDMPFSY-IHHT  251 (492)
Q Consensus       181 ~~~~~~~~~~L~~L~L~~~~-l~~--l~~~~~~l~~L~~L~l~~~--~i~~lp---~~~~~~l~~L~~L~L~~~~-l~~l  251 (492)
                      .......++.|+.|.+.++. ++.  +-.....+++|+.|+++++  .+...+   ..+...+++|+.|+++++. ++..
T Consensus       180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence            33444456777777777764 433  3344556777777777652  111111   1122456777777777774 4322


Q ss_pred             H-HHh-hcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhc
Q 045751          252 A-DVF-WEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYK  329 (492)
Q Consensus       252 p-~~~-~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  329 (492)
                      - ..+ ..+++|+.|.+.+|.-                  +  +...+......+++|++|++++|.......+.....+
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~------------------l--t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSN------------------L--TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCc------------------c--chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            1 112 2256666666554431                  0  1122233256778899999988853323345555556


Q ss_pred             CCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC---CCcccccCCCccCeEEEeccccCCCcccccCCC
Q 045751          330 LSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME---DPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG  406 (492)
Q Consensus       330 l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  406 (492)
                      +++|+.|.+.             ....+ +.++.+.+.++....   ........+++++.+.+..+............+
T Consensus       320 c~~l~~l~~~-------------~~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~g  385 (482)
T KOG1947|consen  320 CPNLRELKLL-------------SLNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRG  385 (482)
T ss_pred             Ccchhhhhhh-------------hcCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcC
Confidence            6766666554             22224 556666666554321   222244578888888888776333322223334


Q ss_pred             CccccEEeecccCCcceEEEccCccccccEEEEeecCCcCcc-chhccC-CCCCcEEEecCCC
Q 045751          407 FPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRL-PKQLWS-VKRFKKLELWRPQ  467 (492)
Q Consensus       407 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~-l~~L~~L~l~~c~  467 (492)
                      ++.|. .         .+.........++.|++..|...+.- -..... +.+++.+++.+|+
T Consensus       386 c~~l~-~---------~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  386 CPNLT-E---------SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             Ccccc-h---------HHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            44441 1         11111223333788888888765421 111111 6677778888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00013  Score=62.96  Aligned_cols=82  Identities=22%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH--Hhhcccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L  266 (492)
                      .+...+||++|.+..++. +..++.|.+|.+++|+|+.+.+.+-..+++|..|.+.+|++.++.+  .+..+|+|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455677888887765543 5668888999999999998877773457789999999987766543  2667788888877


Q ss_pred             ccccc
Q 045751          267 GLFTL  271 (492)
Q Consensus       267 ~~~~~  271 (492)
                      -+|..
T Consensus       121 l~Npv  125 (233)
T KOG1644|consen  121 LGNPV  125 (233)
T ss_pred             cCCch
Confidence            76654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.48  E-value=0.00048  Score=67.30  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccccc
Q 045751          301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE  380 (492)
Q Consensus       301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~  380 (492)
                      +..+.+++.|++++|   ....+|.   -..+|+.|.++   .|.+|+.+.   +.+|++|++|++++|......|    
T Consensus        48 ~~~~~~l~~L~Is~c---~L~sLP~---LP~sLtsL~Ls---nc~nLtsLP---~~LP~nLe~L~Ls~Cs~L~sLP----  111 (426)
T PRK15386         48 IEEARASGRLYIKDC---DIESLPV---LPNELTEITIE---NCNNLTTLP---GSIPEGLEKLTVCHCPEISGLP----  111 (426)
T ss_pred             HHHhcCCCEEEeCCC---CCcccCC---CCCCCcEEEcc---CCCCcccCC---chhhhhhhheEccCcccccccc----
Confidence            556788999999988   4555551   22469999998   577776543   2355788888888884222232    


Q ss_pred             CCCccCeEEEecc
Q 045751          381 KLPLLQVLKLKKN  393 (492)
Q Consensus       381 ~l~~L~~L~l~~~  393 (492)
                        ++|+.|++.++
T Consensus       112 --~sLe~L~L~~n  122 (426)
T PRK15386        112 --ESVRSLEIKGS  122 (426)
T ss_pred             --cccceEEeCCC
Confidence              24556666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.09  E-value=0.00048  Score=59.60  Aligned_cols=102  Identities=17%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCch--hHHhcCC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPS--SFLSSIS  236 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~--~~~~~l~  236 (492)
                      ..+...+++.+|.+.      -...|..++.|.+|.+++|.|+.+.+.+. .+++|..|.+.+|.|.++.+  -+ ..++
T Consensus        41 ~d~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p  113 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCP  113 (233)
T ss_pred             ccccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCC
Confidence            567778888888764      34567788888888888888887766564 45578888888888774432  22 4788


Q ss_pred             CccEEecCCCcccchHHH----hhcccccccccccc
Q 045751          237 NLYTLDMPFSYIHHTADV----FWEMNKLRHLNFGL  268 (492)
Q Consensus       237 ~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~L~~  268 (492)
                      +|++|.+-+|.+..-...    +..+++|+.||+..
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            888888888866555432    56677777777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.81  E-value=0.00012  Score=75.32  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=21.0

Q ss_pred             EEEEeecCCc-CccchhccCCCCCcEEEecCCCHHHHHH
Q 045751          436 CLIIDPCAYL-KRLPKQLWSVKRFKKLELWRPQPELRQK  473 (492)
Q Consensus       436 ~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~~~~~~  473 (492)
                      .+.+.+|+.+ ..+........+++.|++..|.......
T Consensus       380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~  418 (482)
T KOG1947|consen  380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG  418 (482)
T ss_pred             HHHhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence            4555566655 3332223334448999999987444333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.00026  Score=64.18  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=70.2

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch--hHHhcCCC
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS--SFLSSISN  237 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~~l~~  237 (492)
                      ..+++.|.+.++.+.      ......+|+.|++|.|+=|.|+.+.. +..|++|+.|.|+.|.|..+.+  .+ .++++
T Consensus        18 l~~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YL-knlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYL-KNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHH-hcCch
Confidence            445667777787775      23566789999999999998887654 6778899999999998886653  33 68888


Q ss_pred             ccEEecCCC-c-ccchH----HHhhccccccccc
Q 045751          238 LYTLDMPFS-Y-IHHTA----DVFWEMNKLRHLN  265 (492)
Q Consensus       238 L~~L~L~~~-~-l~~lp----~~~~~l~~L~~L~  265 (492)
                      |+.|.|..| . ...-+    .-+.-+|+|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888887 2 22222    1256677777774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.60  E-value=0.0011  Score=59.71  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             ccCCcEEEEEecCCcCCCCchhhccccccCEEEccCC--CCc-cCchhHHhcCCCccEEecCCCcccchH--HHhhcccc
Q 045751          186 KMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIP--SLK-SLPSSFLSSISNLYTLDMPFSYIHHTA--DVFWEMNK  260 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~  260 (492)
                      ..+..|..|++.+..++.+- .+-.|++|++|.++.|  ++. .++..+ .++++|++|++++|+++.+-  ..+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcc
Confidence            34445555555555544221 1334677888888877  554 555555 66788888888888554321  12556667


Q ss_pred             ccccccccccc
Q 045751          261 LRHLNFGLFTL  271 (492)
Q Consensus       261 L~~L~L~~~~~  271 (492)
                      |..|++.+|..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            77777777754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.57  E-value=0.0026  Score=52.39  Aligned_cols=81  Identities=14%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             HHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccc
Q 045751          183 KICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNK  260 (492)
Q Consensus       183 ~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~  260 (492)
                      ..|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +..++...|.++++|+.+.+.+ .+..++.. +..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455555555555553 233333 33455555666655543 5555555555555566666544 33333322 334555


Q ss_pred             cccccc
Q 045751          261 LRHLNF  266 (492)
Q Consensus       261 L~~L~L  266 (492)
                      |+.+++
T Consensus        83 l~~i~~   88 (129)
T PF13306_consen   83 LKNIDI   88 (129)
T ss_dssp             ECEEEE
T ss_pred             cccccc
Confidence            555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.00052  Score=62.26  Aligned_cols=84  Identities=17%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH--Hhhccccccccc
Q 045751          188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLN  265 (492)
Q Consensus       188 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~  265 (492)
                      +.+.+.|+.-||.++.+. -..+|+.|+.|.|+-|+|+.+.+-  ..|++|+.|.|+.|.|..+..  .+.++++|+.|-
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            445666777777766442 234677888888888888877542  678888888888887766643  366777777777


Q ss_pred             ccccccCCC
Q 045751          266 FGLFTLPAY  274 (492)
Q Consensus       266 L~~~~~~~~  274 (492)
                      |..|...+.
T Consensus        95 L~ENPCc~~  103 (388)
T KOG2123|consen   95 LDENPCCGE  103 (388)
T ss_pred             hccCCcccc
Confidence            766654443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.48  E-value=0.0083  Score=49.32  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=34.7

Q ss_pred             CeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCE
Q 045751          140 MIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRY  216 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~  216 (492)
                      +++.+.+. +....+....+  +++|+.+.+..+..     .+....|.+++.++.+.+.+ .+..++ ..+..+++|+.
T Consensus        13 ~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~~~-----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   13 NLESITFP-NTIKKIGENAFSNCTSLKSINFPNNLT-----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T--EEEET-ST--EE-TTTTTT-TT-SEEEESSTTS-----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCEEEEC-CCeeEeChhhccccccccccccccccc-----ccceeeeecccccccccccc-cccccccccccccccccc
Confidence            34444444 33444443444  44555555544311     13334455554555555543 222222 23344555555


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCC
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPF  245 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~  245 (492)
                      +.+..+ +..++...|.++ +|+.+.+..
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555432 444444444444 555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.0026  Score=57.48  Aligned_cols=105  Identities=25%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             CCceEEEEecccCCCCCcccccCCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcceEE--EccCccccc
Q 045751          359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT--MGTGAMPKL  434 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L  434 (492)
                      ..|+.|++.++.++  ....+..+|+|+.|.++.|.  ..+ .+......+|+|++|.+++| .++.+.  ..+..+++|
T Consensus        43 ~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence            45566666665542  23355678899999999883  333 23444556699999999998 444321  135677788


Q ss_pred             cEEEEeecCCcCcc---chhccCCCCCcEEEecCCC
Q 045751          435 ECLIIDPCAYLKRL---PKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       435 ~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~  467 (492)
                      ..|++.+|..+.--   -..+.-+++|+.|+-..+.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            88899888765410   1134567888888766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.62  E-value=0.0053  Score=33.05  Aligned_cols=19  Identities=37%  Similarity=0.553  Sum_probs=9.2

Q ss_pred             EEEEEecCCcCCCCchhhc
Q 045751          191 LRVLDLGSLVLSQLPSGIE  209 (492)
Q Consensus       191 L~~L~L~~~~l~~l~~~~~  209 (492)
                      |++||+++|.++.+|+.|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4455555555544444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.49  E-value=0.0049  Score=33.21  Aligned_cols=17  Identities=53%  Similarity=0.749  Sum_probs=7.4

Q ss_pred             cCEEEccCCCCccCchh
Q 045751          214 LRYLKLNIPSLKSLPSS  230 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~  230 (492)
                      |++|++++|.++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.0014  Score=56.85  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             CceEEEEecccCCCCCcccccCCCccCeEEEeccccCC-CcccccCCCCccccEEeecccCCcceEE-EccCccccccEE
Q 045751          360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG-RKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMPKLECL  437 (492)
Q Consensus       360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L  437 (492)
                      .++.++-+++.+......-+.+++.++.|.+.+|...+ ..+....+..++|+.|+|++|+.+++-- ..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45666666666655666666677777777776654332 2233333456677777777776666321 234566666666


Q ss_pred             EEeecCC
Q 045751          438 IIDPCAY  444 (492)
Q Consensus       438 ~l~~c~~  444 (492)
                      .+.+=+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            6665443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.89  E-value=0.001  Score=58.85  Aligned_cols=91  Identities=18%  Similarity=0.031  Sum_probs=65.0

Q ss_pred             hHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccc
Q 045751          180 DCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMN  259 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~  259 (492)
                      ++...+..++...+||++.|.+..+...++.++.|..|+++.+.+..+|.+. +....+.++++..|+....|.+++..+
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~  111 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEP  111 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccC
Confidence            3345556677777777777776666666666777777777777777777776 777777777777777777777777777


Q ss_pred             cccccccccccc
Q 045751          260 KLRHLNFGLFTL  271 (492)
Q Consensus       260 ~L~~L~L~~~~~  271 (492)
                      .++++++..+.+
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            777777766653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.07  E-value=0.03  Score=27.94  Aligned_cols=13  Identities=46%  Similarity=0.478  Sum_probs=4.3

Q ss_pred             cCEEEccCCCCcc
Q 045751          214 LRYLKLNIPSLKS  226 (492)
Q Consensus       214 L~~L~l~~~~i~~  226 (492)
                      |+.|++++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.68  E-value=0.042  Score=27.39  Aligned_cols=15  Identities=33%  Similarity=0.388  Sum_probs=5.8

Q ss_pred             CccEEecCCCcccch
Q 045751          237 NLYTLDMPFSYIHHT  251 (492)
Q Consensus       237 ~L~~L~L~~~~l~~l  251 (492)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555544444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.53  E-value=0.006  Score=53.00  Aligned_cols=82  Identities=18%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             cCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE--ccCccccccEEEEeecCCcCcc-chhccCCCCCcEE
Q 045751          385 LQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM--GTGAMPKLECLIIDPCAYLKRL-PKQLWSVKRFKKL  461 (492)
Q Consensus       385 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L  461 (492)
                      ++.++-+++.+..+.+ .-+..+++++.|.+.+|..+..+.-  --+-.|+|+.|+|++|+.+++- -.++..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4556666555554442 2256788999999999988886532  2346799999999999988743 3577889999999


Q ss_pred             EecCCC
Q 045751          462 ELWRPQ  467 (492)
Q Consensus       462 ~l~~c~  467 (492)
                      .+.+.+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            999876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.53  E-value=0.067  Score=30.00  Aligned_cols=20  Identities=40%  Similarity=0.358  Sum_probs=12.4

Q ss_pred             cccCEEEccCCCCccCchhH
Q 045751          212 FFLRYLKLNIPSLKSLPSSF  231 (492)
Q Consensus       212 ~~L~~L~l~~~~i~~lp~~~  231 (492)
                      ++|++|++++|.|+.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.53  E-value=0.067  Score=30.00  Aligned_cols=20  Identities=40%  Similarity=0.358  Sum_probs=12.4

Q ss_pred             cccCEEEccCCCCccCchhH
Q 045751          212 FFLRYLKLNIPSLKSLPSSF  231 (492)
Q Consensus       212 ~~L~~L~l~~~~i~~lp~~~  231 (492)
                      ++|++|++++|.|+.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.95  E-value=0.0043  Score=62.89  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             eeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhccc-cccCEEEccCCCCc-----cCchhH
Q 045751          163 LHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIENL-FFLRYLKLNIPSLK-----SLPSSF  231 (492)
Q Consensus       163 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~l-~~L~~L~l~~~~i~-----~lp~~~  231 (492)
                      +..+.+.+|.............+.....|..|++++|.+..     +-..+... ..|++|++..|.+.     .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            44444445544432334556666677777777777776651     11222222 34566666666555     233444


Q ss_pred             HhcCCCccEEecCCCccc-----chHHHhh----cccccccccccccccC
Q 045751          232 LSSISNLYTLDMPFSYIH-----HTADVFW----EMNKLRHLNFGLFTLP  272 (492)
Q Consensus       232 ~~~l~~L~~L~L~~~~l~-----~lp~~~~----~l~~L~~L~L~~~~~~  272 (492)
                       .....++.+|++.|.+.     .++..+.    ...++++|++++|.++
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence             44666777777777331     1222233    3556777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.01  E-value=0.02  Score=50.91  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=71.0

Q ss_pred             CCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccC
Q 045751          203 QLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS  281 (492)
Q Consensus       203 ~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~  281 (492)
                      .+| ..+.....-+.||++.+++..+-..+ +.++.|+.||++.+.+..+|..+++...++++++..|.. ...|.+.+.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k  109 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKK  109 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch-hhCCccccc
Confidence            444 44666778889999999988888777 889999999999999999999999999999999887765 577777777


Q ss_pred             CcccceeecC
Q 045751          282 LENLNFISAL  291 (492)
Q Consensus       282 l~~L~~l~~~  291 (492)
                      ++.++.++..
T Consensus       110 ~~~~k~~e~k  119 (326)
T KOG0473|consen  110 EPHPKKNEQK  119 (326)
T ss_pred             cCCcchhhhc
Confidence            7766666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.05  E-value=0.32  Score=27.17  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=16.7

Q ss_pred             CCCccEEecCCCcccchHHHh
Q 045751          235 ISNLYTLDMPFSYIHHTADVF  255 (492)
Q Consensus       235 l~~L~~L~L~~~~l~~lp~~~  255 (492)
                      +++|+.|+|++|.+..+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888899888888888654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.05  E-value=0.32  Score=27.17  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=16.7

Q ss_pred             CCCccEEecCCCcccchHHHh
Q 045751          235 ISNLYTLDMPFSYIHHTADVF  255 (492)
Q Consensus       235 l~~L~~L~L~~~~l~~lp~~~  255 (492)
                      +++|+.|+|++|.+..+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888899888888888654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=83.99  E-value=0.038  Score=56.14  Aligned_cols=132  Identities=20%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             eeEEEEecCCCCcccccc----c--CCCeeEEEeecCCCCCCCchhHHHHhccC-CcEEEEEecCCcCC-----CCchhh
Q 045751          141 IKRLTANVNLSELDSLED----F--NLYLHSLLCLSSESHHLDPLDCEKICKMF-KFLRVLDLGSLVLS-----QLPSGI  208 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~----~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~-----~l~~~~  208 (492)
                      ..++++.++.+.......    +  .+.|..|++.+|.+.+.........+... ..+++|++..|.++     .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            455555544444433222    2  77888888888887743344555555554 66788888888765     345666


Q ss_pred             ccccccCEEEccCCCCc-----cCchhH---HhcCCCccEEecCCCcccc-----hHHHhhcccc-cccccccccccC
Q 045751          209 ENLFFLRYLKLNIPSLK-----SLPSSF---LSSISNLYTLDMPFSYIHH-----TADVFWEMNK-LRHLNFGLFTLP  272 (492)
Q Consensus       209 ~~l~~L~~L~l~~~~i~-----~lp~~~---~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~-L~~L~L~~~~~~  272 (492)
                      ....+++.++++.|.+.     .++..+   |....++++|.+++|.++.     +...+...+. +..|++..|.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            67778888888888764     222333   1247788999999886542     2233555555 677888877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 31/245 (12%)

Query: 188 FKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
           F  L  L+L   ++S +  G   NLF LR L L    LK +P    + +SNL  LD+  +
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 247 YIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTP 298
            I      +F ++  L+ L  G   L  +     +   SLE L      ++++       
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--- 171

Query: 299 DILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
             L  L  L  LR    L +    ++   S  +L  L+ L++   S  P L  +      
Sbjct: 172 --LSHLHGLIVLR----LRHLNINAIRDYSFKRLYRLKVLEI---SHWPYLDTMT-PNCL 221

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGS-HGFPKLKVL 413
           +  +LT LS ++  L   P   +  L  L+ L L  N  S +         H   +L+ +
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEI 277

Query: 414 HLKSM 418
            L   
Sbjct: 278 QLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 52/296 (17%), Positives = 97/296 (32%), Gaps = 48/296 (16%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           L+ L++G   L  +       L  L  L L   +L S+P+  LS +  L  L +    I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 250 H-TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL-------NFISALHPRCCTPDIL 301
                 F  + +L+ L    +        +C    NL         ++A+         +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----LAV 244

Query: 302 GRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPP 359
             L  LR L    +LS N   ++    L++L  L+ ++LV      +L+ +    ++   
Sbjct: 245 RHLVYLRFL----NLSYNPISTIEGSMLHELLRLQEIQLVGG----QLAVVEPYAFRGLN 296

Query: 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML 419
            L  L+ S  +L          +  L+ L L  N      L C               +L
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP-----LACDCR------------LL 339

Query: 420 WLEEWTMGTGAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKKLE-LWRPQPELRQK 473
           W+           +        CA  + +  K+                +  +R +
Sbjct: 340 WVFRRRWRLNFNRQQP-----TCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDR 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 46/275 (16%), Positives = 79/275 (28%), Gaps = 35/275 (12%)

Query: 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS 202
                 NL + D      L   ++             D   +      +    L S+ + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 203 QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262
           ++       F  ++L+L        P+  L S+  L                  ++  L 
Sbjct: 296 RVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS----EVDLPSLE 350

Query: 263 HLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ-S 321
            L+                  + N +S      C         +L+ L    DLS N   
Sbjct: 351 FLDL-----------------SRNGLSFKG---CCSQSDFGTTSLKYL----DLSFNGVI 386

Query: 322 LLSKSLYKLSSLESLKLVNESKMPRLSKIV-LDEYQFPPSLTHLSFSNTELMEDPMPTLE 380
            +S +   L  LE L   +      L ++     +    +L +L  S+T           
Sbjct: 387 TMSSNFLGLEQLEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 381 KLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
            L  L+VLK+  NS+    L         L  L L
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 21/219 (9%)

Query: 191 LRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            + LDL    L  L S    +   L+ L L+   ++++      S+S+L TL +  + I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 250 H-TADVFWEMNKLRHLNF---GLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDIL 301
                 F  ++ L+ L      L +L  +P     +L+ L    N I +       P+  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL----PEYF 145

Query: 302 GRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPP 359
             L NL  L    DLS+N+  S+    L  L  +  L L  +  +  ++ I    ++   
Sbjct: 146 SNLTNLEHL----DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EI 200

Query: 360 SLTHLSFSNTEL-MEDPMPTLEKLPLLQVLKLKKNSYLG 397
            L  L+  N    +      ++ L  L+V +L    +  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 33/237 (13%)

Query: 191 LRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           L  L L    +  L  G    L  L+ L     +L SL +  +  +  L  L++  + I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 250 HT--ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL 307
                + F  +  L HL+                    N I +++        L  L  +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSS-----------------NKIQSIYC-----TDLRVLHQM 175

Query: 308 RKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVN---ESKMPRLSKIVLDEYQFPPSLTH 363
             L +  DLS N  + +    +K   L  L L N      + +     L   +    L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV-HRLVL 234

Query: 364 LSFSNTELMEDPMP-TLEKLPLLQV--LKLKKNSYLGRKLTCGSHGFPKLKVLHLKS 417
             F N   +E      LE L  L +   +L    Y    +    +    +    L S
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 41/252 (16%), Positives = 73/252 (28%), Gaps = 20/252 (7%)

Query: 174 HHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK-SLPSSFL 232
             +   D   + +M      LDL    ++ +  G      L  L L       ++  + +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 233 SSISNLYTLDMPFSYI-------HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL 285
             ++ L    +                     +  L    F L  L  Y  +       L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 286 NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMP 345
             +S+      T + +         + H +L N          KL SL+ L   +     
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 346 RLSKIVLDEYQFPPSLTHLSFSNTEL--MEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCG 403
             S++ L      PSL  L  S   L        +      L+ L L  N  +   ++  
Sbjct: 340 AFSEVDL------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSN 391

Query: 404 SHGFPKLKVLHL 415
             G  +L+ L  
Sbjct: 392 FLGLEQLEHLDF 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 281 SLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLE 334
           S +NL    N +  L             P L+ L    DLS  +  ++   +   LS L 
Sbjct: 29  STKNLDLSFNPLRHLGS-----YSFFSFPELQVL----DLSRCEIQTIEDGAYQSLSHLS 79

Query: 335 SLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394
           +L L        +  + L  +    SL  L    T L       +  L  L+ L +  N 
Sbjct: 80  TLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 395 YLGRKLTCGSHGFPKLKVLHLKS 417
               KL         L+ L L S
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSS 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 50/275 (18%), Positives = 85/275 (30%), Gaps = 36/275 (13%)

Query: 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS 202
                 NL   +      L   ++        +    D  K   +   +  + L  + + 
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIK 298

Query: 203 QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262
            L       F  + L +    LK  P+  L     L +L +  +     +     +  L 
Sbjct: 299 YLEDVP-KHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMNKGS-ISFKKVALPSLS 353

Query: 263 HLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ-S 321
           +L+                  + N +S     CC+   LG   +LR L    DLS N   
Sbjct: 354 YLDL-----------------SRNALSFSG--CCSYSDLG-TNSLRHL----DLSFNGAI 389

Query: 322 LLSKSLYKLSSLESLKLVNESKMPRLSKIV-LDEYQFPPSLTHLSFSNTELMEDPMPTLE 380
           ++S +   L  L+ L   +      L ++     +     L +L  S T    D      
Sbjct: 390 IMSANFMGLEELQHLDFQHS----TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 381 KLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
            L  L  LK+  NS+    L+        L  L L
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 58/306 (18%), Positives = 96/306 (31%), Gaps = 50/306 (16%)

Query: 147 NVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS 206
            V++  L+ +   +    SL  +  +      LD         FL+ L L     S    
Sbjct: 294 GVSIKYLEDVP-KHFKWQSLSIIRCQLKQFPTLD-------LPFLKSLTLTMNKGSISFK 345

Query: 207 GIENLFFLRYLKL---NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRH 263
            +  L  L YL L    +        S L + ++L  LD+ F+     +  F  + +L+H
Sbjct: 346 KV-ALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 264 LNFG---LFTLPAYPRNDCGSLENL-------NFISALHPRCCTPDILGRLPNLRKLRIH 313
           L+F    L  +     +   SLE L                     I   L +L  L   
Sbjct: 404 LDFQHSTLKRVT--EFSAFLSLEKLLYLDISYTNTKIDFD-----GIFLGLTSLNTL--- 453

Query: 314 GDLSNNQ---SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTE 370
             ++ N    + LS      ++L  L L   SK  +L +I    +     L  L+ S+  
Sbjct: 454 -KMAGNSFKDNTLSNVFANTTNLTFLDL---SKC-QLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLK--------SMLWLE 422
           L+        +L  L  L    N  +        H    L   +L               
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL 567

Query: 423 EWTMGT 428
           +W    
Sbjct: 568 QWVKEQ 573

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 22/244 (9%)

Query: 188 FKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
           F  L+ LDL    +  +       L  L  L L    ++S      S +++L  L    +
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 247 YIHH-TADVFWEMNKLRHLN-----FGLFTLPAYPRNDCGSLENL----NFISALHPRCC 296
            +    +    ++  L+ LN          LPAY  N   +L ++    N+I  +     
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTIT---- 169

Query: 297 TPDILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKL---VNESKMPRLSKIVL 352
             + L  L    ++ +  D+S N    +    ++   L  L L    N S + +     L
Sbjct: 170 -VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 353 DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFPKLK 411
                   +         L       +E L  + + + +              H    + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 412 VLHL 415
            + L
Sbjct: 289 AMSL 292

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 46/238 (19%), Positives = 83/238 (34%), Gaps = 31/238 (13%)

Query: 193 VLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-T 251
                   LS++P  I +    + + L+   LK L S   S+ S L  LD+    I    
Sbjct: 15  TYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 252 ADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRL 304
              +  ++ L +L      + +      +   SLENL      +++L         +G+L
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE-----SFPIGQL 127

Query: 305 PNLRKLRIHGDLSNNQ---SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF---- 357
             L+KL    ++++N      L      L++L  + L        +  I +++ QF    
Sbjct: 128 ITLKKL----NVAHNFIHSCKLPAYFSNLTNLVHVDLSY----NYIQTITVNDLQFLREN 179

Query: 358 PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
           P     L  S   +        + +  L  L L+ N      +         L V  L
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 19/143 (13%)

Query: 281 SLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLE 334
           S +N+    N +  L               L+ L    DLS  +  ++  K+ + L  L 
Sbjct: 33  STKNIDLSFNPLKILKS-----YSFSNFSELQWL----DLSRCEIETIEDKAWHGLHHLS 83

Query: 335 SLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394
           +L L        +       +    SL +L    T+L       + +L  L+ L +  N 
Sbjct: 84  NLILTG----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 395 YLGRKLTCGSHGFPKLKVLHLKS 417
               KL         L  + L  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSY 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 33/256 (12%)

Query: 191 LRVLDLGS--LVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL----YTLDMP 244
           L+ L++    +   +LP+   NL  L ++ L+   ++++  + L  +        +LDM 
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 245 FSYIHHTADVFWEMNKLRHL----NFGLFTLPAYPRNDCGSLENLN-----FISALHPRC 295
            + I    D  ++  KL  L    NF    +      +   L         F    +   
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL--------KLVNESKMPRL 347
             P I+  L ++         +N+ S      + L+++ ++         L +  K  + 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 348 SKIVLDEYQF-------PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS-YLGRK 399
             + +   Q         P L  L+ +  +           LP L  L L +N+      
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGC 367

Query: 400 LTCGSHGFPKLKVLHL 415
            +    G   L+ L L
Sbjct: 368 CSYSDLGTNSLRHLDL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 58/277 (20%), Positives = 102/277 (36%), Gaps = 36/277 (12%)

Query: 146 ANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP 205
            +++  ++       L   S+  ++ + H+   +        F  L+ LDL +  LS+LP
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELP 294

Query: 206 SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI--HHTADVFWEMNKLRH 263
           SG+  L  L+ L L+    ++L     S+  +L  L +  +             +  LR 
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 264 LNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--S 321
           L+                    + I       C    L  L +L+ L    +LS N+  S
Sbjct: 355 LDLS-----------------HDDIETSD---CCNLQLRNLSHLQSL----NLSYNEPLS 390

Query: 322 LLSKSLYKLSSLESLKLVNESKMPRLSKIVLDE-YQFPPSLTHLSFSNTELMEDPMPTLE 380
           L +++  +   LE L L       RL        +Q    L  L+ S++ L        +
Sbjct: 391 LKTEAFKECPQLELLDLAFT----RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 381 KLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLHL 415
            LP LQ L L+ N       + T       +L++L L
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 28/243 (11%)

Query: 188 FKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
              L  LDL    +  +     ++   L  L L    L  +  + LS    L  L    +
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 247 YIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTP 298
            I             L  L  G   + ++          L+ L    N I  L       
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK----- 170

Query: 299 DILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF 357
           + +  L     L +  +L+ N  + +    +  +  +SL         +   ++    + 
Sbjct: 171 EDMSSLQQATNLSL--NLNGNDIAGIEPGAFDSAVFQSLNFGGT----QNLLVIFKGLKN 224

Query: 358 --PPSLTHLSFSNTELMEDPMPTLEKLPL--LQVLKLKKNSYLGRKLTCGS-HGFPKLKV 412
               SL   +F + +  +      E L    ++ + L+K+ +    ++  + H F  L+ 
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF--FNISSNTFHCFSGLQE 282

Query: 413 LHL 415
           L L
Sbjct: 283 LDL 285

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 35/247 (14%)

Query: 181 CEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYT 240
            ++ C   +  +  +  +L L+++P  + N      L+ +   L ++ ++  S + NL  
Sbjct: 4   SDQKCIEKEVNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTF 61

Query: 241 LDMPFSYIHH-TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPD 299
           LD+    I+    D F   ++L  L                 L   N +  +        
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLV----------------LTA-NPLIFMAE-----T 99

Query: 300 ILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF 357
            L     L+ L            S+    L+   +LESL L +      +S I L +   
Sbjct: 100 ALSGPKALKHL----FFIQTGISSIDFIPLHNQKTLESLYLGS----NHISSIKLPKGFP 151

Query: 358 PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS 417
              L  L F N  +       +  L     L L  N      +  G+      + L+   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 418 MLWLEEW 424
              L   
Sbjct: 212 TQNLLVI 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
             V D   L L+Q+P  +     +  L L    L+ LP++  +  S L +LD+ F+ I  
Sbjct: 6   HEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 251 -TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILG 302
              ++  ++  L+ LN     L  L       C +L  L    N I  +       +   
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-----NPFV 118

Query: 303 RLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKL-VNESKMPRLSKIVLDEYQF-- 357
           +  NL  L    DLS+N   S    +  +L +L+ L L  N     ++  +  +E     
Sbjct: 119 KQKNLITL----DLSHNGLSSTKLGTQVQLENLQELLLSNN-----KIQALKSEELDIFA 169

Query: 358 PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLHL 415
             SL  L  S+ ++ E        +  L  L L          +  C       ++ L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 416 KS 417
            +
Sbjct: 230 SN 231

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 49/246 (19%), Positives = 87/246 (35%), Gaps = 29/246 (11%)

Query: 191 LRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           L +LDL    L+ + +     L  L Y  L   +++ L S  L  + N+  L++  S+  
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 250 HT----------ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL-------NFISALH 292
            +             F  +  L HLN     +P    N    L NL       +F S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 293 PRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKI 350
               T   L     L  L    +L+ N+   + S +   L  LE L L          ++
Sbjct: 370 LTNETFVSLA-HSPLHIL----NLTKNKISKIESDAFSWLGHLEVLDL---GLNEIGQEL 421

Query: 351 VLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFPK 409
              E++   ++  +  S  + ++    +   +P LQ L L++ +      +         
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 410 LKVLHL 415
           L +L L
Sbjct: 482 LTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 188 FKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
           +  L  LD+G   +S+L     + L  L+ L L    L  L     +  +NL  L +  +
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 247 YIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTP 298
            I     + F +   L  L+     L +     +    +L+ L    N I AL       
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD- 166

Query: 299 DILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
             +    +L+KL    +LS+NQ         + +  L  L L N    P L++ +  E  
Sbjct: 167 --IFANSSLKKL----ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPL--LQVLKLKKNSYLGRKLTCGS-HGFPKLKVL 413
              S+ +LS SN++L      T   L    L +L L  N+     +   S    P+L+  
Sbjct: 221 -NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVVGNDSFAWLPQLEYF 277

Query: 414 HL 415
            L
Sbjct: 278 FL 279

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 50/265 (18%), Positives = 87/265 (32%), Gaps = 44/265 (16%)

Query: 191 LRVLDLGSLVLSQLPSG-IENLFFLRYLKL-NIPSLKSLPSSFLSSISNLYTLDMPFSYI 248
           L +L+L    +S++ S     L  L  L L      + L       + N++ + + ++  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 249 HH-TADVFWEMNKLRHLNFG---LFTLPAYPR--NDCGSLENL----NFISALHPRCCTP 298
              T + F  +  L+ L      L  + + P       +L  L    N I+ ++      
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND----- 497

Query: 299 DILGRLPNLRKLRIHGDLSNNQ----------SLLSKSLYKLSSLESLKLVNESKMPRLS 348
           D+L  L  L  L    DL +N                 L  LS L  L L +        
Sbjct: 498 DMLEGLEKLEIL----DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN----GFD 549

Query: 349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP 408
           +I ++ ++    L  +      L   P         L+ L L+KN     +       F 
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 409 KLKVLHL---------KSMLWLEEW 424
            L  L +         +S+ W   W
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNW 634

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 52/258 (20%), Positives = 95/258 (36%), Gaps = 36/258 (13%)

Query: 187 MFKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF 245
           +    R+L+L    +  +     ++L  L  L+L+   ++++     + ++NL TL++  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 246 SYIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL-----NFISALHPRCC 296
           + +       F  ++KL+ L      + ++P+Y  N   SL  L       +S +     
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---- 177

Query: 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
                  L NLR L    +L+        +L  L  L+ L L        LS I    +Q
Sbjct: 178 -EGAFEGLSNLRYL----NLAMCNLREIPNLTPLIKLDELDLSGN----HLSAIRPGSFQ 228

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLH 414
               L  L    +++        + L  L  + L  N  + L   L         L+ +H
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL---FTPLHHLERIH 285

Query: 415 LKS--------MLWLEEW 424
           L          +LWL  W
Sbjct: 286 LHHNPWNCNCDILWLSWW 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 39/262 (14%)

Query: 161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLN 220
           + L S+L +   +       C  +C        +      L ++P GI      R L L+
Sbjct: 15  VSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGIST--NTRLLNLH 72

Query: 221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHLNFGLFTLPAYPRNDC 279
              ++ +  +    + +L  L +  ++I       F  +  L  L               
Sbjct: 73  ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE-------------- 118

Query: 280 GSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLK 337
             L + N ++ +            L  L++L     L NN   S+ S +  ++ SL  L 
Sbjct: 119 --LFD-NRLTTIP-----NGAFVYLSKLKEL----WLRNNPIESIPSYAFNRIPSLRRLD 166

Query: 338 LVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG 397
           L    ++ RLS I    ++   +L +L+ +   L E  +P L  L  L  L L  N    
Sbjct: 167 L---GELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHL-- 219

Query: 398 RKLTCGS-HGFPKLKVLHLKSM 418
             +  GS  G   L+ L +   
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQS 241

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 53/258 (20%), Positives = 93/258 (36%), Gaps = 36/258 (13%)

Query: 187 MFKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF 245
           +    R L+L    +  + +    +L  L  L+L   S++ +     + +++L TL++  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 246 SYIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL-----NFISALHPRCC 296
           +++    +  F  ++KLR L      + ++P+Y  N   SL  L       +  +     
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---- 188

Query: 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
                  L NL+ L    +L         +L  L  LE L++          +I    + 
Sbjct: 189 -EGAFEGLFNLKYL----NLGMCNIKDMPNLTPLVGLEELEMSG----NHFPEIRPGSFH 239

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLH 414
              SL  L   N+++        + L  L  L L  N  S L   L         L  LH
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL---FTPLRYLVELH 296

Query: 415 LKS--------MLWLEEW 424
           L          +LWL  W
Sbjct: 297 LHHNPWNCDCDILWLAWW 314

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 39/257 (15%)

Query: 166 LLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK 225
           L    + +    P +C  +C        +      LS++P GI      RYL L   +++
Sbjct: 31  LCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQ 88

Query: 226 SLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLEN 284
            + +     + +L  L +  + I       F  +  L  L                 L +
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE----------------LFD 132

Query: 285 LNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNES 342
            N+++ +            L  LR+L     L NN   S+ S +  ++ SL  L L    
Sbjct: 133 -NWLTVIP-----SGAFEYLSKLREL----WLRNNPIESIPSYAFNRVPSLMRLDL---G 179

Query: 343 KMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTC 402
           ++ +L  I    ++   +L +L+     + +  MP L  L  L+ L++  N +   ++  
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHF--PEIRP 235

Query: 403 GS-HGFPKLKVLHLKSM 418
           GS HG   LK L + + 
Sbjct: 236 GSFHGLSSLKKLWVMNS 252

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 7e-12
 Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 29/251 (11%)

Query: 188 FKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
            K L+VL+L    ++++       L  L+ L L+   L  L SS    +  +  +D+  +
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 247 YIHH-TADVFWEMNKLRHLNFG---LFTLPAYPR--------NDCGSLENLNF----ISA 290
           +I       F  + KL+ L+     L T+   P         N   +L  +N     I  
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 291 LHPRCCTPDILGRLPNLRKLRIHGDLSNNQ---SLLSKSLYKLSSLESLKLV-NESKMPR 346
              R    DIL  L  +  L+I   L+ N+       ++  +  SLE L L  N  ++  
Sbjct: 409 SENRLENLDILYFLLRVPHLQIL-ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG 406
            +++  D ++    L  L  ++  L   P      L  L+ L L  N     +LT  SH 
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-----RLTVLSHN 522

Query: 407 --FPKLKVLHL 415
                L++L +
Sbjct: 523 DLPANLEILDI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 49/286 (17%), Positives = 99/286 (34%), Gaps = 42/286 (14%)

Query: 137 SRKMIKRLTANVNLSELDSLEDFNL-YLHSLLCLSSESHHLDPLDCEKICKMFK-FLRVL 194
           S             + +   + F+L   H ++      H++   D      + +  +R L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 195 DLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TA 252
           DL    +  L S + E L  L+ L L    +  +       + NL  L++ ++ +    +
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 253 DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRI 312
             F+ + K+ +++                L+  N I+ +  +         L  L+ L  
Sbjct: 332 SNFYGLPKVAYID----------------LQK-NHIAIIQDQT-----FKFLEKLQTL-- 367

Query: 313 HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM 372
             DL +N       L  +  + S+  +  S    L  +     +   +   +  S   L 
Sbjct: 368 --DLRDNA------LTTIHFIPSIPDIFLSGNK-LVTLP----KINLTANLIHLSENRLE 414

Query: 373 E-DPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS 417
             D +  L ++P LQ+L L +N +            P L+ L L  
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 28/291 (9%)

Query: 149 NLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGI 208
            +  + +   F  +L  L  L   S +      ++  +    LR+LDLGS  +  L    
Sbjct: 35  YIRTVTA-SSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92

Query: 209 -ENLFFLRYLKLNIPSLKS--LPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRH 263
            + LF L  L+L    L    L   +  ++  L  LD+  + I        F ++N L+ 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 264 LNFGLFTLPAYPRNDCGSLENLNF----ISALHPRCCTPDILGRLPN-LRKLRIHG-DLS 317
           ++F    +     ++   L+        ++A           G+  N  R + +   D+S
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 318 NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF------------PPSLTHLS 365
            N   +  +    +++   +  +      +       +                S+ HL 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 366 FSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFPKLKVLHL 415
            S+  +        E L  L+VL L  N     K+   + +G   L+VL+L
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNL 321

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 50/289 (17%), Positives = 99/289 (34%), Gaps = 49/289 (16%)

Query: 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV 200
           I+ L  + +  +L+SL+  +   + +  +      L+PL         K L    L +  
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--LEPLQ-------GKTLSFFSLAANS 185

Query: 201 LSQLPSGIENLFF-------LRYLKLNIPSLKSLPSS-FLSSISNLYTLDMPFSYIHHTA 252
           L    S              L  L ++        +  F ++IS            HH  
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS--LILAHHIM 243

Query: 253 DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLR 308
              +  + ++  +   F   A       S+ +L     F+ +L+       +   L +L+
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARS-----SVRHLDLSHGFVFSLNS-----RVFETLKDLK 293

Query: 309 KLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF 366
            L    +L+ N+   +  ++ Y L +L+ L L        L ++    +   P + ++  
Sbjct: 294 VL----NLAYNKINKIADEAFYGLDNLQVLNLSY----NLLGELYSSNFYGLPKVAYIDL 345

Query: 367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
               +      T + L  LQ L L+ N      LT   H  P +  + L
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDN-----ALTT-IHFIPSIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 42/223 (18%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKL------NIPSLKSLPSSFLS--SISNLYTL 241
           +  +DL    ++ +     + L  L+ L L       I  + S+P  FLS   +  L  +
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 242 DMPFSYIH---------HTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL---- 285
           ++  + IH                 +  L+ L        +             +L    
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS--GDQTPSENPSLEQLF 457

Query: 286 ---NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVN 340
              N +          D+   L +L+ L     L++N   SL       L++L  L L +
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVL----YLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 341 ESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLP 383
                RL+  VL     P +L  L  S  +L+         L 
Sbjct: 514 N----RLT--VLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 48/277 (17%), Positives = 81/277 (29%), Gaps = 58/277 (20%)

Query: 191 LRVLDLGSLVLSQL---PSGIENLFFLRYLKLNIPSLKSLP-SSFLSSISNLYTLDM--- 243
           L  L L    LS          NL  L  L L+   ++SL        +++L ++D    
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 244 PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL-------------NFISA 290
               +        +   L   +    +L +    D G   N              N  + 
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 291 LHPRCCTPDI-------LGRLPNLRKLRIHG----------------------DLSNNQ- 320
                 +  I       L    ++                             DLS+   
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 321 -SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL 379
            SL S+    L  L+ L L       +++KI  + +    +L  L+ S   L E      
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYN----KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 380 EKLPLLQVLKLKKNSYLGRKLTCGS-HGFPKLKVLHL 415
             LP +  + L+KN      +   +     KL+ L L
Sbjct: 335 YGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 44/236 (18%), Positives = 74/236 (31%), Gaps = 44/236 (18%)

Query: 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT 251
           R+       L+Q+P  +        L L+   ++++ +S    +  L  L++   Y   T
Sbjct: 7   RIAFYRFCNLTQVPQVLNTT---ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 252 --ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309
              + F  +  LR L+                    + I  LHP     D    L +L +
Sbjct: 64  IDKEAFRNLPNLRILDL-----------------GSSKIYFLHP-----DAFQGLFHLFE 101

Query: 310 LRIHGDLSNNQ----SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFP--PSLTH 363
           L     L         L       L +L  L L       ++  + L    F    SL  
Sbjct: 102 L----RLYFCGLSDAVLKDGYFRNLKALTRLDLSK----NQIRSLYLHPS-FGKLNSLKS 152

Query: 364 LSFSNTELMEDPMPTLEKL--PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS 417
           + FS+ ++       LE L    L    L  NS   R            + + L+ 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 29/235 (12%)

Query: 194 LDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM---PFSYIHH 250
           +   S  L+ +P+GI        L+L    L+SLP      ++ L  L +     S+   
Sbjct: 12  IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 251 TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGR 303
            +   +    L++L+     + T+ +        LE+L    + +  +        +   
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE----FSVFLS 124

Query: 304 LPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSL 361
           L NL  L    D+S+       +     LSSLE LK+   +        + D +    +L
Sbjct: 125 LRNLIYL----DISHTHTRVAFNGIFNGLSSLEVLKM---AGNSFQENFLPDIFTELRNL 177

Query: 362 THLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFPKLKVLHL 415
           T L  S  +L +        L  LQVL +  N++    L          L+VL  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 56/258 (21%), Positives = 86/258 (33%), Gaps = 44/258 (17%)

Query: 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV 200
           ++ L   V   +L  L   +L  + L      S                 L+ LDL    
Sbjct: 40  LQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGT---------TSLKYLDLSFNG 89

Query: 201 LSQLPSGIENLFFLRYLKLNIPSLKSLPS-SFLSSISNLYTLDMPFSYIHH-TADVFWEM 258
           +  + S    L  L +L     +LK +   S   S+ NL  LD+  ++       +F  +
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 259 NKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSN 318
           + L  L                 +   +F          PDI   L NL  L    DLS 
Sbjct: 150 SSLEVLK----------------MAGNSFQENFL-----PDIFTELRNLTFL----DLSQ 184

Query: 319 NQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM 376
            Q   L   +   LSSL+ L + +         +    Y+   SL  L +S   +M    
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 377 PTLEKLP-LLQVLKLKKN 393
             L+  P  L  L L +N
Sbjct: 241 QELQHFPSSLAFLNLTQN 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 52/285 (18%), Positives = 93/285 (32%), Gaps = 58/285 (20%)

Query: 149 NLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCE-----------KICKMFKFLRVLDLG 197
            LS+     + +          + S++                  +          L+L 
Sbjct: 31  VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG-RVALELR 89

Query: 198 SLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE 257
           S+ L Q P     L  L+++ ++   L  LP + +   + L TL +  + +         
Sbjct: 90  SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIAS 148

Query: 258 MNKLRHLNF----GLFTLPA-----YPRNDCGSLENL-------NFISALHPRCCTPDIL 301
           +N+LR L+      L  LP          +   L NL         I +L      P  +
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL------PASI 202

Query: 302 GRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPS 360
             L NL+ L     + N+  S L  +++ L  LE L L   + +             PP 
Sbjct: 203 ANLQNLKSL----KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY----------PPI 248

Query: 361 LTHLS-------FSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398
               +          + L+  P   + +L  L+ L L+    L R
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSR 292

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 52/289 (17%), Positives = 94/289 (32%), Gaps = 37/289 (12%)

Query: 182 EKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSIS-NLYT 240
                +    +                 N    +       +LK+       +       
Sbjct: 26  RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 241 LDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDI 300
           L++    +    D  + ++ L+H+             D   L  L            PD 
Sbjct: 86  LELRSVPLPQFPDQAFRLSHLQHMTI-----------DAAGLMEL------------PDT 122

Query: 301 LGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRL-----SKIVLDE 354
           + +   L  L     L+ N    L  S+  L+ L  L +    ++  L     S     E
Sbjct: 123 MQQFAGLETL----TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 355 YQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLH 414
           +Q   +L  L    T +   P  ++  L  L+ LK++ +      L    H  PKL+ L 
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELD 235

Query: 415 LKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLEL 463
           L+    L  +    G    L+ LI+  C+ L  LP  +  + + +KL+L
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 29/217 (13%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM----PF 245
            + + L    +S +P+        L  L L+   L  + ++  + ++ L  LD+      
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 246 SYIHHTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTP 298
             +      F  + +L  L+     L  L         +L+ L    N + AL       
Sbjct: 94  RSVD--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----- 146

Query: 299 DILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
           D    L NL  L     L  N+  S+  ++   L SL+ L L       R++ +    ++
Sbjct: 147 DTFRDLGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAFR 198

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
               L  L      L   P   L  L  LQ L+L  N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 79/531 (14%), Positives = 163/531 (30%), Gaps = 155/531 (29%)

Query: 14  EVTLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEEEMIYQLWIAEGFIPD 73
            V               + ++  S+L   E +   H++         +   W        
Sbjct: 23  SVFEDAFVDNFDCK-DVQ-DMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLL----S 73

Query: 74  NNEGTAEKYLEHLI--NRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFIYSSVI 131
             E   +K++E ++  N  F+    IK   R           P+++        +Y    
Sbjct: 74  KQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQ----------PSMMTR------MYIEQR 116

Query: 132 DQ-ESDSRKMIKRLTANVN-----------LSELDSLEDFNLYLHSLL-----CLSSESH 174
           D+  +D++   K    NV+           L EL   +  N+ +  +L      ++ +  
Sbjct: 117 DRLYNDNQVFAKY---NVSRLQPYLKLRQALLELRPAK--NVLIDGVLGSGKTWVALD-- 169

Query: 175 HLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS 234
                    +C  +K          V  ++   I   F+     LN+ +  S P + L  
Sbjct: 170 ---------VCLSYK----------VQCKMDFKI---FW-----LNLKNCNS-PETVLEM 201

Query: 235 ISNLYT-LDMPF-SYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSL------ENLN 286
           +  L   +D  + S   H++++   ++ ++     L     Y       L      +N  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAK 257

Query: 287 FISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR 346
             +A +  C            + L           L + +   +S       +   ++  
Sbjct: 258 AWNAFNLSC------------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 347 L-SKIV-LDEYQFPP-----SLTHLS-FSNTELMEDPMPTLEKLPLLQVLKLKK------ 392
           L  K +       P      +   LS  +  E + D + T +    +   KL        
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 393 ---NSYLGRKL--TCGSHGFPK-----LKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC 442
                   RK+        FP        +L   S++W +        + K + +++   
Sbjct: 364 NVLEPAEYRKMFDRLSV--FPPSAHIPTILL---SLIWFD--------VIKSDVMVV--- 407

Query: 443 AYLKRLPKQLWSVKRFKKLELWRP--QPELRQKLRDFKDK-----EQYNIQ 486
             + +L K     K+ K+  +  P    EL+ KL +         + YNI 
Sbjct: 408 --VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 85/594 (14%), Positives = 170/594 (28%), Gaps = 186/594 (31%)

Query: 3   SERLRRLLSGEEV----TLPDAAKQLAQNLHTEIEIVTSLLRDYECEIAGHLVNIIVEEE 58
            +  + +LS EE+       DA              +   L   + E+    V  ++   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGT--------LRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 59  EMIYQLWIAEGF-----IPDNNEGTAEKYLEHLINRGFVEAK----KIKVGSRINTC--- 106
              Y+ ++          P        +  + L N   V AK    +++   ++      
Sbjct: 91  ---YK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 107 --SIPN----------RWWPAL-------IQVALAGEFIYSSVIDQESDSR--KMIKRLT 145
                N          + W AL       +Q  +  +  + ++ +  S     +M+++L 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 146 ANVNLS-------------ELDSLEDF-------NLYLHSLLCLS--SESHHLDPLDCEK 183
             ++ +              + S++           Y + LL L     +   +  +   
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS- 265

Query: 184 ICKM---------FKFLRVLDLGSLVLSQLPSGI---ENL-FFLRYLKLNIPSLKSLPSS 230
            CK+           FL       + L      +   E     L+YL       + LP  
Sbjct: 266 -CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPRE 321

Query: 231 FLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL--NFI 288
            + + +       P         +  E   +R    GL T   +   +C  L  +  + +
Sbjct: 322 -VLTTN-------PR-----RLSIIAES--IRD---GLATWDNWKHVNCDKLTTIIESSL 363

Query: 289 SALHP---RCC-------------TPDILGRLPNLRKLRIHGDLSN---NQSLLSK---- 325
           + L P   R                  +L  +           + N     SL+ K    
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 326 SLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLL 385
           S   + S+     V       L + ++D Y  P      +F + +L+   +         
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIP-----KTFDSDDLIPPYL--------- 469

Query: 386 QVLKLKKN---SYLGRKLTCGSHG-----FPKLKVLHLKSMLWLEE--------WTMGTG 429
                      S++G  L    H      F  +  L  +   +LE+        W     
Sbjct: 470 ------DQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR---FLEQKIRHDSTAWNASGS 519

Query: 430 AMPKLECL------IIDPCAYLKRLPKQLWSVKRFKKLELWRPQPEL-RQKLRD 476
            +  L+ L      I D     +RL   + ++  F    L + +  L   K  D
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERL---VNAILDF----LPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 40/267 (14%), Positives = 86/267 (32%), Gaps = 51/267 (19%)

Query: 249 HHTADVFWEMNKLRHLNFGLFT--LPAYPRN-DCGSLENLNFISALHPRCCTPDILGRLP 305
           HH  D  +E  + ++    + +    A+  N DC  ++++   S L        I+    
Sbjct: 4   HHHMD--FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEID-HIIM-SK 58

Query: 306 N--LRKLRIHGDLSNNQSLLSKSLYKLSSLESL---------KLVNESKMPRLSKIVLDE 354
           +     LR+   L + Q    + + +    E L          +  E + P +   +  E
Sbjct: 59  DAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 355 YQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQ--VLKLKKNSYLGRKLTCGSHGFPK--L 410
            +       L   N    +  +  L+    L+  +L+L+    +   L  G  G  K  +
Sbjct: 115 QRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWV 166

Query: 411 KVLHLKS----------MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKK 460
            +    S          + WL    +     P+    +++    L       W+ +    
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWL---NLKNCNSPET---VLEMLQKLLYQIDPNWTSRSDHS 220

Query: 461 LELWRPQPELRQKLRDFKDKEQYNIQL 487
             +      ++ +LR     + Y   L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL 247

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 21/245 (8%)

Query: 191 LRVLDLGSL-VLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248
           L+ L +G++   S++       L  L  L++   SL++  S  L SI +++ L +  S  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 249 HHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR---------CCTP 298
               +     ++ +R+L      L  +  +     E  + +  L  R             
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 299 DILGRLPNLRKLRI----HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDE 354
            +L  +  L ++         L +     S  + +L  +E++ +     +P+        
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLS 303

Query: 355 YQFP--PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKL 410
             +     +  ++  N+++   P    + L  L+ L L +N       K +     +P L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 411 KVLHL 415
           + L L
Sbjct: 364 QTLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 25/215 (11%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
             V D  S   + +PSG+     ++ L L+   +  +    L + +NL  L +  S I+ 
Sbjct: 7   SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 251 -TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILG 302
              D F+ +  L HL+     L +L +       SL+ L    N    L        +  
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV----TSLFP 120

Query: 303 RLPNLRKLRIHGDLSNN---QSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPP 359
            L NL+ L     + N      +       L+SL  L++        L        +   
Sbjct: 121 NLTNLQTL----RIGNVETFSEIRRIDFAGLTSLNELEIKAL----SLRNYQSQSLKSIR 172

Query: 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394
            + HL+   +E         + L  ++ L+L+  +
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 42/212 (19%), Positives = 70/212 (33%), Gaps = 45/212 (21%)

Query: 191 LRVLDLGSLVLSQL----PSGIENLFFLRYLKL---NIPSLKSLPSSFLSSISNLYTLDM 243
           L  LDL   ++ +      +       L+ L L   ++ S++        ++ NL +LD+
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL-LTLKNLTSLDI 394

Query: 244 PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGR 303
             +  H   D      K+R LN                L +   I  +            
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLN----------------LSS-TGIRVVKT--------CI 429

Query: 304 LPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTH 363
              L  L    D+SNN   L      L  L+ L +       +L    L +    P L  
Sbjct: 430 PQTLEVL----DVSNNN--LDSFSLFLPRLQELYISRN----KLKT--LPDASLFPVLLV 477

Query: 364 LSFSNTELMEDPMPTLEKLPLLQVLKLKKNSY 395
           +  S  +L   P    ++L  LQ + L  N +
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 44/243 (18%)

Query: 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            LRV+    L L ++P  +        L L    +  +      ++ NL+TL +  + I 
Sbjct: 32  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 250 H-TADVFWEMNKLRHLNFG---LFTLPAY-PRNDCGSLENL----NFISALHPRCCTPDI 300
             +   F  + KL  L      L  LP   P+     L+ L    N I+ +        +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT----LQELRVHENEITKVRK-----SV 140

Query: 301 LGRLPNLRKLRIHGDLSNNQ----SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
              L  +  +    +L  N      + + +   +  L  +++ +      ++ I      
Sbjct: 141 FNGLNQMIVV----ELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTI---PQG 189

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG----FPKLKV 412
            PPSLT L     ++ +    +L+ L  L  L L  N      ++   +G     P L+ 
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-----SISAVDNGSLANTPHLRE 244

Query: 413 LHL 415
           LHL
Sbjct: 245 LHL 247

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 27/160 (16%)

Query: 187 MFKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF 245
           +   L  L L    ++++ +   + L  L  L L+  S+ ++ +  L++  +L  L +  
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 246 SYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRC-CTPDILGRL 304
           + +        +   ++ +                 L N N ISA+     C P    + 
Sbjct: 250 NKLVKVPGGLADHKYIQVVY----------------LHN-NNISAIGSNDFCPPGYNTKK 292

Query: 305 PNLRKLRIHGDLSNNQ----SLLSKSLYKLSSLESLKLVN 340
            +   +     L +N      +   +   +    +++L N
Sbjct: 293 ASYSGV----SLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 35/293 (11%)

Query: 141 IKRLTANVNLSELDSLEDFNLYLHSL--LCLSSESHHLDPLDCEKICKMFKFLRVLDLGS 198
           + +LT   N   L+ ++     L  L    L       +    +      + L  L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 199 LVLSQL-------PSGIENLFFLRYLKLNIPSLKSLPS-SFLSSISNLYTLDMPFSYIHH 250
             L+ L             L  +    L   +++ +   S+     +L  ++  F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP- 320

Query: 251 TADVFWEMNKLRHLNF-GLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLP 305
                 ++  L+ L F       A+   D  SLE L    N +S      C         
Sbjct: 321 ----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG---CCSQSDFGTT 373

Query: 306 NLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF--PPSLT 362
           +L+ L    DLS N    +S +   L  LE L   +      L ++  +   F    +L 
Sbjct: 374 SLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQM-SEFSVFLSLRNLI 424

Query: 363 HLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
           +L  S+T            L  L+VLK+  NS+    L         L  L L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 60/300 (20%), Positives = 105/300 (35%), Gaps = 43/300 (14%)

Query: 149 NLSELDSLEDFNLYLHSLLC-LSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSG 207
            L+ LD   D  + L + L  +SS S     ++  K        + L+L +    Q P+ 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 208 IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM---PFSYIHHTADVFWEMNKLRHL 264
              L  L+ L        +  S     + +L  LD+     S+    +   +    L++L
Sbjct: 323 --KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 265 NF---GLFTLPAYPRNDCGSLENLNF----ISALHPRCCTPDILGRLPNLRKLRIHGDLS 317
           +    G+ T+ +        LE+L+F    +  +        +   L NL  L    D+S
Sbjct: 379 DLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYL----DIS 429

Query: 318 NNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEY-QFPPSLTHLSFSNTELMED 374
           +       +     LSSLE LK+          +  L +      +LT L  S  +L + 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGN----SFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFPKLKVLHL---------KSMLWLEEW 424
                  L  LQVL +  N    + +  G       L+ + L           + +L  W
Sbjct: 486 SPTAFNSLSSLQVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 21/219 (9%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            + LDL    L  L S    +   L+ L L+   ++++      S+S+L TL +  + I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 250 H-TADVFWEMNKLRHLNF---GLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDIL 301
                 F  ++ L+ L      L +L  +P     +L+ L    N I +       P+  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL----PEYF 145

Query: 302 GRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPP 359
             L NL  L    DLS+N+  S+    L  L  +  L L  +  +  ++ I    ++   
Sbjct: 146 SNLTNLEHL----DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EI 200

Query: 360 SLTHLSFSNTELMEDPMPT-LEKLPLLQVLKLKKNSYLG 397
            L  L+  N     + M T ++ L  L+V +L    +  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 286 NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESK 343
           N +  L             P L+ L    DLS  +  ++   +   LS L +L L     
Sbjct: 38  NPLRHLGS-----YSFFSFPELQVL----DLSRCEIQTIEDGAYQSLSHLSTLILTGN-- 86

Query: 344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCG 403
              +  + L  +    SL  L    T L       +  L  L+ L +  N     KL   
Sbjct: 87  --PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 404 SHGFPKLKVLHLKS 417
                 L+ L L S
Sbjct: 145 FSNLTNLEHLDLSS 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 36/247 (14%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            +++   +  + +LP+ + ++   +  L LN   ++ + +   +    +  L M F+ I 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 250 H-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDIL 301
           +    VF  +  L  L      L +LP    ++   L  L    N +  +       D  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-----DDTF 161

Query: 302 GRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNE-----SKMPRLSKIVLDEYQ 356
               +L+ L     LS+N+ L    L  + SL    +        +    + ++      
Sbjct: 162 QATTSLQNL----QLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216

Query: 357 FP-------PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS-HGFP 408
                      LT L   +  L +     L   P L  + L  N     K+         
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQ 272

Query: 409 KLKVLHL 415
           +L+ L++
Sbjct: 273 RLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 42/274 (15%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           + +L+L  L + ++ +        ++ L +   +++ LP     ++  L  L +  + + 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 250 H-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDIL 301
                +F    KL  L+     L  +         SL+NL    N ++ +          
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-------- 182

Query: 302 GRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKL-------VNESKMPRLSKIVL-- 352
             +P+L       ++S N      +L    ++E L         V       L+ + L  
Sbjct: 183 SLIPSLFHA----NVSYNLL---STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235

Query: 353 ------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG 406
                       P L  +  S  EL +       K+  L+ L +  N      L      
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQP 293

Query: 407 FPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIID 440
            P LKVL L     L           +LE L +D
Sbjct: 294 IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 39/216 (18%)

Query: 204 LPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR 262
           + S ++       + +++ +          +++N   +    S +    A +     ++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 263 HLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ-- 320
            LN                L +   I  +               ++KL     +  N   
Sbjct: 73  LLN----------------LND-LQIEEIDT-----YAFAYAHTIQKL----YMGFNAIR 106

Query: 321 SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE 380
            L       +  L  L L        LS +    +   P LT LS SN  L      T +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERN----DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 381 KLPLLQVLKLKKNSYLGRKLTC-GSHGFPKLKVLHL 415
               LQ L+L  N     +LT       P L   ++
Sbjct: 163 ATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANV 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 33/183 (18%)

Query: 187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
           +   L   ++   +LS L         +  L  +  S+  +          L  L +  +
Sbjct: 184 LIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNV---ELTILKLQHN 236

Query: 247 YIHHTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPD 299
            +  T         L  ++     L  +  +P      LE L    N + AL        
Sbjct: 237 NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL------NL 289

Query: 300 ILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKL-------VNESKMPRLSKIV 351
               +P L+ L    DLS+N    + ++  +   LE+L L       +  S    L  + 
Sbjct: 290 YGQPIPTLKVL----DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345

Query: 352 LDE 354
           L  
Sbjct: 346 LSH 348

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 42/239 (17%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM---PFS 246
           L+ L L S  ++ +      +L  L +L L+   L +L SS+   +S+L  L++   P+ 
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 247 YIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN 306
            +     +F  + KL+ L  G                N++  + +            L  
Sbjct: 138 TLGE-TSLFSHLTKLQILRVG----------------NMDTFTKIQR-----KDFAGLTF 175

Query: 307 LRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHL 364
           L +L    ++  +   S   KSL  + ++  L L +  +   L +I +D      S+  L
Sbjct: 176 LEEL----EIDASDLQSYEPKSLKSIQNVSHLIL-HMKQHILLLEIFVD---VTSSVECL 227

Query: 365 SFSNTELMEDPM---PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGF---PKLKVLHLKS 417
              +T+L         T E   L++    +        L            L  L    
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 53/293 (18%), Positives = 96/293 (32%), Gaps = 50/293 (17%)

Query: 161 LYLHSLLCLSSE-SHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKL 219
             L  ++ LS E S +   L C++         +    S  L+ +PSG+     ++ L L
Sbjct: 9   WVLGVIISLSKEESSNQASLSCDRNG-------ICKGSSGSLNSIPSGL--TEAVKSLDL 59

Query: 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHLNFGLFTLPAYPRND 278
           +   +  + +S L    NL  L +  + I+    D F  +  L HL+             
Sbjct: 60  SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD------------- 106

Query: 279 CGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESL 336
              L   N++S L            L +L  L    +L  N   +L   SL   S L  L
Sbjct: 107 ---LSY-NYLSNLSS-----SWFKPLSSLTFL----NLLGNPYKTLGETSL--FSHLTKL 151

Query: 337 KLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYL 396
           +++    M   +KI   ++     L  L    ++L      +L+ +  +  L L      
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK--- 208

Query: 397 GRKLTC-GSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRL 448
             +              +     L L +  + T    +L     +        
Sbjct: 209 --QHILLLEIFVDVTSSVEC---LELRDTDLDTFHFSELSTGETNSLIKKFTF 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSL-PSSFLSSISNLYTLDM----P 244
           L  LDL    LS L S   + L  L +L L     K+L  +S  S ++ L  L +     
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 245 FSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL-------NFISALHPRCCT 297
           F+ I      F  +  L  L      L +Y      S++N+            L      
Sbjct: 162 FTKIQR--KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---- 215

Query: 298 PDILGRLPNLRKLRIHG-DLSNNQ-----SLLSKSLYKLSSLESLKLVNESKMPRLSKIV 351
              +    ++  L +   DL         +  + SL K  +  ++K+ +ES        V
Sbjct: 216 -IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-----V 269

Query: 352 LDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
           +        L  L FS  +L   P    ++L  LQ + L  N
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 42/277 (15%)

Query: 188 FKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
           F+ + +L+L  L + ++ +        ++ L +   +++ LP     ++  L  L +  +
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 247 YIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTP 298
            +      +F    KL  L+     L  +         SL+NL    N ++ +       
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL----- 188

Query: 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKL-------VNESKMPRLSKIV 351
                +P+L       ++S N      +L    ++E L         V       L+ + 
Sbjct: 189 ---SLIPSLFHA----NVSYNLL---STLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

Query: 352 L--------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCG 403
           L              P L  +  S  EL +       K+  L+ L +  N      L   
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--LVALNLY 296

Query: 404 SHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIID 440
               P LKVL L     L           +LE L +D
Sbjct: 297 GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 33/224 (14%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            +++   +  + +LP+ + ++   +  L LN   ++ + +   +    +  L M F+ I 
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 250 H-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDIL 301
           +    VF  +  L  L      L +LP    ++   L  L    N +  +       D  
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-----DDTF 167

Query: 302 GRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL-----KLVNESKMPRLSKIVLD--- 353
               +L+ L     LS+N+ L    L  + SL         L   +    + ++      
Sbjct: 168 QATTSLQNL----QLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 222

Query: 354 ----EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
                      LT L   +  L +     L   P L  + L  N
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 32/204 (15%)

Query: 219 LNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRND 278
            N+          +   +           +++   V ++ + +R L   L          
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD-------S 73

Query: 279 CGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSS 332
              +E L      I  +               ++KL     +  N    L       +  
Sbjct: 74  FRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKL----YMGFNAIRYLPPHVFQNVPL 124

Query: 333 LESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKK 392
           L  L L        LS +    +   P LT LS SN  L      T +    LQ L+L  
Sbjct: 125 LTVLVLERN----DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 393 NSYLGRKLTC-GSHGFPKLKVLHL 415
           N     +LT       P L   ++
Sbjct: 181 N-----RLTHVDLSLIPSLFHANV 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 30/219 (13%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM---PFS 246
            + LDL    L  L S    +   L+ L L+   ++++      S+S+L TL +   P  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 247 YIHHTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPD 299
            +      F  ++ L+ L      L +L  +P     +L+ L    N I +       P+
Sbjct: 90  SLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPE 143

Query: 300 ILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKL---VNESKMPRLSKIVLDE 354
               L NL  L    DLS+N+  S+    L  L  +  L L   ++ + M  +       
Sbjct: 144 YFSNLTNLEHL----DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK- 198

Query: 355 YQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
                 L  L+    +L   P    ++L  LQ + L  N
Sbjct: 199 ---EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 28/156 (17%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
           L  LD     LS LP    +L   ++L ++   L  LP       + L  ++   + +  
Sbjct: 102 LEYLDACDNRLSTLPELPASL---KHLDVDNNQLTMLPEL----PALLEYINADNNQLTM 154

Query: 251 TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGR 303
             +       L  L+     L  LP  P     SLE L    N + +L      P +  R
Sbjct: 155 LPE---LPTSLEVLSVRNNQLTFLPELP----ESLEALDVSTNLLESL------PAVPVR 201

Query: 304 LPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKL 338
             +  +  I      N+ + + +++  L    ++ L
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 41/233 (17%)

Query: 189 KFLRVLDLGSLVLSQLPSGIE------NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLD 242
             +  +D     +      I              + L+   ++  P+   ++ S + T+ 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 243 M--------PFSYIHHTADVFWEMNKLRHLNFG---LFTLPA-YPRNDCGSLENL----N 286
           +        P + +      +     L  ++     L +L   +       L N+    N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 287 FISALHPRCCTPDILGRLPNLRKLRIHG--DLSNNQSL--LSKSLYKLSSLESLKL-VNE 341
             S+       P        L+   I    D   N+ L      +    SL  L++  N 
Sbjct: 764 CFSSF------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN- 816

Query: 342 SKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394
                + K+   + +  P L  L  ++   +   + ++       +  L  + 
Sbjct: 817 ----DIRKV---DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 43/310 (13%), Positives = 95/310 (30%), Gaps = 53/310 (17%)

Query: 141 IKRLTANVNLSELD----SLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDL 196
           I+RLT    L  +          N+ +      S  +   +  +      +   L  ++L
Sbjct: 444 IQRLT---KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKD-LTDVEL 498

Query: 197 GSL-VLSQLPSGIENLFFLRYLKLN----------IPSLKSLPSSFLSSISNLYTLDMPF 245
            +   ++QLP  + +L  L+ L +                 L      +   +    M +
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE-DTGPKIQIFYMGY 557

Query: 246 SYIHH--TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCC 296
           + +     +    +M KL  L+     +  L A+       L +L    N I  +     
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF--GTNVKLTDLKLDYNQIEEIPE--- 612

Query: 297 TPDILGRLPNLRKLRIHGDLSNNQ--SLLSK-SLYKLSSLESLKL-VNE-SKMPRLSKIV 351
             D       +  L      S+N+   + +  +   +  + S+    N+     R     
Sbjct: 613 --DFCAFTDQVEGL----GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 352 LDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN------SYLGRKLTCGSH 405
           +D+Y+   + + ++ S  E+ + P         +  + L  N          +       
Sbjct: 667 MDDYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 406 GFPKLKVLHL 415
               L  + L
Sbjct: 726 NTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 42/243 (17%)

Query: 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSL--PSSFLSSISNLYTLDM--- 243
             L+VL  G+   +       +      +         +     FL     L   D+   
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 244 ------PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHP 293
                     I   + +  +  ++ +L   +  +    +     L+ +    +  +  + 
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNI 465

Query: 294 RCCT--------------PDILGRLPNLRKLRIHGDLSNNQSL--LSKSLYKLSSLESL- 336
                                   L +L  +    +L N  ++  L   LY L  L+SL 
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDV----ELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 337 ----KLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMP-TLEKLPLLQVLKLK 391
               + ++ +++      + D+    P +         L E P   +L+K+  L +L   
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 392 KNS 394
            N 
Sbjct: 582 HNK 584

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 56/279 (20%)

Query: 150 LSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIE 209
           +  L  L+            +      D                    +           
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWED---------------ANSDYAKQYENEELSWS 488

Query: 210 NLFFLRYLKL-NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGL 268
           NL  L  ++L N P++  LP      +  L +L++               N+        
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNI-------------ACNRGISAAQLK 534

Query: 269 FTLPAYPRNDCGSLENL-------NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS 321
                   +D  +   +       N +            L ++  L  L    D  +N+ 
Sbjct: 535 ADWTRLA-DDEDTGPKIQIFYMGYNNLEEFPA----SASLQKMVKLGLL----DCVHNK- 584

Query: 322 LLSK--SLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP-MPT 378
            +    +      L  LKL       ++ +I  D   F   +  L FS+ +L   P +  
Sbjct: 585 -VRHLEAFGTNVKLTDLKLDYN----QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS 417
            + + ++  +    N  +G +    S      K ++  +
Sbjct: 640 AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINAST 677

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 47/242 (19%), Positives = 79/242 (32%), Gaps = 43/242 (17%)

Query: 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            LRV+    L L  +P  I        L L    +  L       + +LY L +  + I 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 250 H-TADVFWEMNKLRHLNFG---LFTLPAY-PRNDCGSLENL----NFISALHPRCCTPDI 300
                 F  + KL+ L      L  +P   P +    L  L    N I  +        +
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS----LVELRIHDNRIRKVPK-----GV 142

Query: 301 LGRLPNLRKLRIHGDLSNNQ---SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF 357
              L N+  +    ++  N    S      +    L  L++       +L+ I  D    
Sbjct: 143 FSGLRNMNCI----EMGGNPLENSGFEPGAFDGLKLNYLRISE----AKLTGIPKD---L 191

Query: 358 PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTC-GSHGF---PKLKVL 413
           P +L  L   + ++    +  L +   L  L L  N     ++    +      P L+ L
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-----QIRMIENGSLSFLPTLREL 246

Query: 414 HL 415
           HL
Sbjct: 247 HL 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/146 (11%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 186 KMFKFLRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMP 244
            + + L  L L    +  +          L  L L    ++ + +  LS +  L  L + 
Sbjct: 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 245 FSYIHHTADVFWEMNKLRHLNFG---LFTLPAY---PRNDCGSLENLNFIS----ALHPR 294
            + +        ++  L+ +      +  +      P          N IS     +   
Sbjct: 250 NNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 295 CCTPDILGRLPNLRKLRIHGDLSNNQ 320
              P     + +   +       N +
Sbjct: 310 EVQPATFRCVTDRLAI----QFGNYK 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 49/232 (21%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS-------------SFLSSISN 237
           LR L++    L+ LP     L  L      +  L +LPS             S       
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142

Query: 238 LYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHP 293
           L  L +  + +     +  E+ KL   N  L +LP  P      L+ L    N +++L  
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP----SGLQELSVSDNQLASL-- 196

Query: 294 RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN------ESKMPRL 347
               P +   L  L          NN+  L+      S L+ L +              L
Sbjct: 197 ----PTLPSELYKL-------WAYNNR--LTSLPALPSGLKELIVSGNRLTSLPVLPSEL 243

Query: 348 SKIVLDEYQF------PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
            ++++   +       P  L  LS    +L   P  +L  L     + L+ N
Sbjct: 244 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 46/229 (20%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
             VL++G   L+ LP  +     +  L +   +L SLP+        L TL++  + +  
Sbjct: 42  NAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTS 95

Query: 251 TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPN 306
              +   + +L   +  L  LPA P      L  L    N +++L             P 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSG----LCKLWIFGNQLTSLPV---------LPPG 142

Query: 307 LRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF 366
           L++L     +S+NQ  L+      S L  L   N +++  L          P  L  LS 
Sbjct: 143 LQEL----SVSDNQ--LASLPALPSELCKLWAYN-NQLTSLPM-------LPSGLQELSV 188

Query: 367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
           S+ +L   P         L  L    N     +LT        LK L +
Sbjct: 189 SDNQLASLP----TLPSELYKLWAYNN-----RLTSLPALPSGLKELIV 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 56/268 (20%)

Query: 168 CLSSESHHLDPLDCEKICK----MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPS 223
           CL++ +  L+ +    +      +   +  L +    L+ LP+       LR L+++   
Sbjct: 37  CLNNGNAVLN-VGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQ 92

Query: 224 LKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLE 283
           L SLP      +  L     P +++          + L  L      L + P      L+
Sbjct: 93  LTSLPVL-PPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLP-VLPPGLQ 144

Query: 284 NL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLV 339
            L    N +++L      P +   L  L          NNQ  L+      S L+ L + 
Sbjct: 145 ELSVSDNQLASL------PALPSELCKL-------WAYNNQ--LTSLPMLPSGLQELSVS 189

Query: 340 N------ESKMPRLSKIVLDEYQF------PPSLTHLSFSNTELMEDPMPTLEKLPLLQV 387
           +       +    L K+     +       P  L  L  S   L   P         L+ 
Sbjct: 190 DNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKE 245

Query: 388 LKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
           L +  N     +LT        L  L +
Sbjct: 246 LMVSGN-----RLTSLPMLPSGLLSLSV 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 41/238 (17%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            ++  +    L Q  + + ++ + ++ L L+   L  + ++ L+  + L  L++  + ++
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 250 HTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILG 302
            T D    ++ LR L+     +  L   P     S+E L    N IS +           
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVSC--------S 117

Query: 303 RLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDE-YQFPP 359
           R    + +     L+NN+   L        S ++ L L        +  +   E      
Sbjct: 118 RGQGKKNI----YLANNKITMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSD 169

Query: 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLHL 415
           +L HL+     + +  +        L+ L L  N  +++G +          +  + L
Sbjct: 170 TLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEF----QSAAGVTWISL 221

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 37/223 (16%)

Query: 204 LPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR 262
           +    +N    +  K+   SLK   +S   S  N+  LD+  + +   +A       KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 263 HLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGD 315
            LN     L+           +L  L    N++  L             P++  L     
Sbjct: 62  LLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV----------GPSIETL----H 105

Query: 316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP 375
            +NN  +   S  +    +++ L N     +++ +   +      + +L     E+    
Sbjct: 106 AANNN-ISRVSCSRGQGKKNIYLANN----KITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 376 MPTL-EKLPLLQVLKLKKNSYLGRKLTC--GSHGFPKLKVLHL 415
              L      L+ L L+ N      +    G   F KLK L L
Sbjct: 161 FAELAASSDTLEHLNLQYN-----FIYDVKGQVVFAKLKTLDL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 43/211 (20%)

Query: 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248
             +  L   +  +S++          + + L    +  L        S +  LD+     
Sbjct: 99  PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL----- 151

Query: 249 HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRL 304
                   ++N++  +NF              +LE+L    NFI  +  +          
Sbjct: 152 --------KLNEIDTVNFAELA------ASSDTLEHLNLQYNFIYDVKGQVV-------F 190

Query: 305 PNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTH 363
             L+ L    DLS+N+ + +       + +  + L N     +L  I     +F  +L H
Sbjct: 191 AKLKTL----DLSSNKLAFMGPEFQSAAGVTWISLRNN----KLVLIE-KALRFSQNLEH 241

Query: 364 LSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394
                       +         +V  + K +
Sbjct: 242 FDLRGNGFHCGTLRDF-FSKNQRVQTVAKQT 271

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 42/257 (16%), Positives = 85/257 (33%), Gaps = 40/257 (15%)

Query: 147 NVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDC--EKICKMFKFLRVLDLGSLVLSQL 204
           NV L       DF+    SL  LS      D        I ++F  + + +        +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 205 PSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMP---FSYIHHTADVFWEMNK 260
                  +    +L  +   L          ++ L TL +       +   A++  +M  
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 261 LRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ 320
           L+ L+                  + N +S                +L  L    ++S+N 
Sbjct: 376 LQQLDI-----------------SQNSVSYDEK----KGDCSWTKSLLSL----NMSSNI 410

Query: 321 --SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT 378
               + + L     ++ L L + +K+  + K V+       +L  L+ ++ +L   P   
Sbjct: 411 LTDTIFRCL--PPRIKVLDL-HSNKIKSIPKQVVKL----EALQELNVASNQLKSVPDGI 463

Query: 379 LEKLPLLQVLKLKKNSY 395
            ++L  LQ + L  N +
Sbjct: 464 FDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 2/207 (0%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           LR+L +    +  L   + +    L YL L+   L  +      ++ +L      F  + 
Sbjct: 47  LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP 106

Query: 250 HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309
                F  M++L+ L      L          L     +  L       +    L +   
Sbjct: 107 ICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 310 LRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNT 369
             +H     N+         + ++ +L+L N   +   +K            T+   SN 
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 370 ELMEDPMPTLEKLPLLQVLKLKKNSYL 396
            L          + +LQ++      Y 
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYF 252

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 44/290 (15%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 141 IKRLTANVNLSELDSLEDFNLY--------LHSLLCLSSESHHLDPLDCEKICKMFKFLR 192
              L        +  L+   L         +  +  L+     L   +     +  + L+
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 193 VLDLGSLVLSQLPSG---------IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM 243
             +  SL +    +          ++ +  L    +      +  S FLS ++ L T   
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 244 PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGR 303
             +   +  +  W           +  L  +      S+ N+     L       D    
Sbjct: 222 LSNLTLNNIETTWN------SFIRILQLVWHTTVWYFSISNVKLQGQL----DFRDFDYS 271

Query: 304 LPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTH 363
             +L+ L IH  +S+        +Y++ S  ++K    S    +  +   +        H
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK---ISPFLH 328

Query: 364 LSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVL 413
           L FSN  L +        L  L+ L L+ N    ++L+  +    ++K L
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMKSL 376

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 50/254 (19%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            ++  +    L Q  + + ++ + ++ L L+   L  + ++ L+  + L  L++  + ++
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 250 HTADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILG 302
            T D    ++ LR L+     +  L   P     S+E L    N IS +           
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVSC--------S 117

Query: 303 RLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVN-----------ESKMPRLSK 349
           R    + +     L+NN+   L        S ++ L L              +    L  
Sbjct: 118 RGQGKKNI----YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 350 IVL--------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT 401
           + L                L  L  S+ +L     P  +    +  + L+ N      + 
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKL--VLIE 230

Query: 402 CGSHGFPKLKVLHL 415
                   L+   L
Sbjct: 231 KALRFSQNLEHFDL 244

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 23/239 (9%)

Query: 187 MFKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLP-SSFLSSISNLYTLDMP 244
             +  + + L +  ++ L          ++YL L +  + ++  +   +S   L  L++ 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 245 FSYIHH-TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCC 296
           +++I+     V +   KL+ L+     L  +    ++    +  +    N +  +     
Sbjct: 178 YNFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKLVLI----- 229

Query: 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQ 356
               L    NL       DL  N           S  + ++ V +  + +L+    +E  
Sbjct: 230 -EKALRFSQNLEHF----DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 357 FPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
            P    + ++   +L       L  L   +   L        +L C      + + +  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 39/209 (18%)

Query: 208 IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHLNF 266
            +N    +  K+   SLK   +S   S  N+  LD+  + +   +A       KL  LN 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKS 326
                            + N +            L  L  LR L    DL+NN   +   
Sbjct: 66  -----------------SSNVLYETLD-------LESLSTLRTL----DLNNNY--VQ-E 94

Query: 327 LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQ 386
           L    S+E+L   N      +S++     +      ++  +N ++             +Q
Sbjct: 95  LLVGPSIETLHAANN----NISRV--SCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 387 VLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
            L LK N          +     L+ L+L
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 29/208 (13%), Positives = 56/208 (26%), Gaps = 33/208 (15%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM---PFSY 247
           L+ LDL S  L+ +    ++   + ++ L    L  +  +      NL   D+    F  
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHC 251

Query: 248 IHHTADVFWEMNKLRHLNFGLFT-LPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN 306
                D F +  +++ +       L      +C      +        CC          
Sbjct: 252 GTLR-DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH----YGAYCCEDLPAPFADR 306

Query: 307 LRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF 366
           L  L+         +LLS    +   LE                   E +       +  
Sbjct: 307 LIALK-----RKEHALLSGQGSETERLEC------------------ERENQARQREIDA 343

Query: 367 SNTELMEDPMPTLEKLPLLQVLKLKKNS 394
              +          +      L+ KK +
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 58/293 (19%), Positives = 96/293 (32%), Gaps = 51/293 (17%)

Query: 144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ 203
           L A    S  D   D N    S +  + E    D +  E++      L  LD  +  ++ 
Sbjct: 3   LKAGQTQSFNDWFPDDNF--ASEVAAAFEMQATDTISEEQL----ATLTSLDCHNSSITD 56

Query: 204 LPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRH 263
           +  GIE L  L  L     ++ +L    LS  +NL  L    + +  T      + KL +
Sbjct: 57  MT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL--TNLDVTPLTKLTY 110

Query: 264 LNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN 319
           LN     L     +    L  L    N ++ +         +     L +L    D   N
Sbjct: 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--------VSHNTQLTEL----DCHLN 158

Query: 320 QSLLSKSLYKLSSLESLKL-------VNESKMPRLSKIVLD-------EYQFPPSLTHLS 365
           + +    +   + L +L         ++ S+   L+++  D       +      LT L 
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLD 218

Query: 366 FSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTC-GSHGFPKLKVLHLKS 417
            S+ +L E     +  L  L       N      LT        KL  LH   
Sbjct: 219 CSSNKLTEID---VTPLTQLTYFDCSVN-----PLTELDVSTLSKLTTLHCIQ 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 55/287 (19%)

Query: 142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL 201
           K +T  V  +EL+S++            +S+   +  +           +  L L    L
Sbjct: 31  KSVTDAVTQNELNSIDQIIAN-------NSDIKSVQGIQ------YLPNVTKLFLNGNKL 77

Query: 202 SQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL 261
           + +   + NL  L +L L+   +K L  S L  +  L +L +  + I    +    + +L
Sbjct: 78  TDI-KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGI-SDINGLVHLPQL 133

Query: 262 RHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS 321
             L                 L N N I+ +         L RL  L  L     L +NQ 
Sbjct: 134 ESLY----------------LGN-NKITDITV-------LSRLTKLDTL----SLEDNQI 165

Query: 322 LLSKSLYKLSSLESLKLVNE--SKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL 379
                L  L+ L++L L     S +  L+ +         +L  L   + E +  P+   
Sbjct: 166 SDIVPLAGLTKLQNLYLSKNHISDLRALAGL--------KNLDVLELFSQECLNKPINHQ 217

Query: 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM 426
             L +   +K    S +  ++      + K  V         E   +
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 60/280 (21%), Positives = 90/280 (32%), Gaps = 47/280 (16%)

Query: 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS 202
               N      +  E     L   L   +    L+ L    + ++   L  L      L+
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT 104

Query: 203 QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262
           +LP   ++L  L     N+ +L  LP         L  L +  + +          + L+
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQL-EKLPELQNSSFLK 156

Query: 263 HLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGD 315
            ++     L  LP  P     SLE +    N +  L         L  LP L  +     
Sbjct: 157 IIDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELPE-------LQNLPFLTAI----Y 201

Query: 316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP 375
             NN   L K      SLES+   N      L +  L E Q  P LT +   N  L   P
Sbjct: 202 ADNNS--LKKLPDLPLSLESIVAGNN----ILEE--LPELQNLPFLTTIYADNNLLKTLP 253

Query: 376 MPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
               +  P L+ L ++ N      LT        L  L +
Sbjct: 254 ----DLPPSLEALNVRDN-----YLTDLPELPQSLTFLDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
           L  L++    L+ LP   ++L FL   +     L  LP        NLY L+   + I  
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIRS 311

Query: 251 TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGR 303
              +      L  LN     L  LPA        LE L    N ++ +      P++   
Sbjct: 312 ---LCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEV------PELPQ- 357

Query: 304 LPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNE--SKMPRLSKIVLDEYQF--- 357
             NL++L     +  N           +  L     + E       L ++ ++       
Sbjct: 358 --NLKQL----HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411

Query: 358 ---PPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
              P S+  L  ++  +++      E    L+    + +
Sbjct: 412 PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 48/256 (18%), Positives = 79/256 (30%), Gaps = 36/256 (14%)

Query: 150 LSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGI- 208
           L          L L S+       + L    C    K    +  LDL      +  +   
Sbjct: 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRF 232

Query: 209 ---ENLFFLRYLKLNIP--SLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRH 263
                   ++ L L+       S   +      N     +  S +          +K+  
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT---CDLSKSKIFA 289

Query: 264 LNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN 319
           L   +F+           LE L    N I+ +       +    L +L KL    +LS N
Sbjct: 290 LLKSVFS-------HFTDLEQLTLAQNEINKIDD-----NAFWGLTHLLKL----NLSQN 333

Query: 320 Q--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMP 377
              S+ S+    L  LE L L + + +  L           P+L  L+    +L   P  
Sbjct: 334 FLGSIDSRMFENLDKLEVLDL-SYNHIRALGDQSFLG---LPNLKELALDTNQLKSVPDG 389

Query: 378 TLEKLPLLQVLKLKKN 393
             ++L  LQ + L  N
Sbjct: 390 IFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 48/254 (18%)

Query: 191 LRVLDLGSLVLSQ-LPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248
           L+ L +        + +     L  L  LKL+      L +   + ++NL  L +    +
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 249 HHT---ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLP 305
                  + F  +  L  L                 L + N I  + P          + 
Sbjct: 116 DGAVLSGNFFKPLTSLEML----------------VLRD-NNIKKIQPA----SFFLNMR 154

Query: 306 NLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNES-KMPRLSKIVLDEYQF----- 357
               L    DL+ N+  S+  + L          L   S  +  +++  L   +      
Sbjct: 155 RFHVL----DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 358 PPSLTHLSFSN---TELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGS------HGFP 408
             S+T L  S     E M            +Q L L  +  +G      +        F 
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 409 KLKVLHLKSMLWLE 422
            L+   +K+   L 
Sbjct: 271 GLEASGVKT-CDLS 283

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 38/230 (16%), Positives = 63/230 (27%), Gaps = 52/230 (22%)

Query: 204 LPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT--ADVFWEMNKL 261
           LP+ +  +     L LN  S+  L  +  S + +L  L +           + F  ++ L
Sbjct: 28  LPAHVNYV----DLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 262 RHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ- 320
             L                 L+  N    L            L NL  L     L+    
Sbjct: 82  IILK----------------LDY-NQFLQLE-----TGAFNGLANLEVL----TLTQCNL 115

Query: 321 ---SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFP-PSLTHLSFSNTELMEDPM 376
               L       L+SLE L L +      + KI    +         L  +  ++     
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDN----NIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

Query: 377 PTLEKLPL--LQVLKLKKNSYL------GRKLTCGS-HGFPKLKVLHLKS 417
             L         +L+L   +             CG+      +  L L  
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 44/257 (17%)

Query: 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS 202
            +T  V+ ++LD +                   +D ++          L  ++  +  L+
Sbjct: 35  NVTDTVSQTDLDQVTTLQAD-------RLGIKSIDGVEY------LNNLTQINFSNNQLT 81

Query: 203 QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262
            +   ++NL  L  + +N   +  +    L++++NL  L +  + I    D    +  L 
Sbjct: 82  DITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DPLKNLTNLN 137

Query: 263 HLNFG---LFTLPAYPRNDCGSLENLNF---ISALHPRCCTPDILGRLPNLRKLRIHGDL 316
            L      +  + A   +   SL+ L+F   ++ L P       L  L  L +L    D+
Sbjct: 138 RLELSSNTISDISAL--SGLTSLQQLSFGNQVTDLKP-------LANLTTLERL----DI 184

Query: 317 SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM 376
           S+N+      L KL++LESL   N     ++S I         +L  LS +  +L +  +
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATN----NQISDI--TPLGILTNLDELSLNGNQLKD--I 236

Query: 377 PTLEKLPLLQVLKLKKN 393
            TL  L  L  L L  N
Sbjct: 237 GTLASLTNLTDLDLANN 253

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 52/203 (25%)

Query: 191 LRVLDLGSLVLSQLPSGI--ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248
             +LDL    LS+L +      L  L  L L+   L  + S     + NL  LD+  +++
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 249 HH-TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL 307
           H     +F ++  L  L                 L N N I  +       +    +  L
Sbjct: 101 HTLDEFLFSDLQALEVLL----------------LYN-NHIVVVD-----RNAFEDMAQL 138

Query: 308 RKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFS 367
           +KL     LS NQ         +S      + + +K+              P L  L  S
Sbjct: 139 QKL----YLSQNQ---------ISRFPVELIKDGNKL--------------PKLMLLDLS 171

Query: 368 NTELMEDPMPTLEKLPLLQVLKL 390
           + +L + P+  L+KLP      L
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 16/134 (11%)

Query: 286 NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESK 343
           N +S L           RL NL  L     LS+N    + S++   + +L  L L + + 
Sbjct: 49  NNLSRLRAE----WTPTRLTNLHSL----LLSHNHLNFISSEAFVPVPNLRYLDL-SSNH 99

Query: 344 MPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLT 401
           +  L + +  +     +L  L   N  ++       E +  LQ L L +N  S    +L 
Sbjct: 100 LHTLDEFLFSDL---QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 402 CGSHGFPKLKVLHL 415
              +  PKL +L L
Sbjct: 157 KDGNKLPKLMLLDL 170

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 32/249 (12%), Positives = 71/249 (28%), Gaps = 31/249 (12%)

Query: 185 CKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLD 242
                 +  L L     S ++P  I  L  L  L L     K +        IS   + +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 243 ------MPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCC 296
                 M +       D   + + L              +           I  L     
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 297 T-PDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLD 353
                + RL  LR+      + N+   +      ++  + E  +   +++  +   +   
Sbjct: 197 FVSKAVMRLTKLRQF----YMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWDNL--- 248

Query: 354 EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP----- 408
                  LT +   N   +      L+ LP +Q++ +  N  +  +              
Sbjct: 249 -----KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 409 --KLKVLHL 415
             K++++++
Sbjct: 304 GEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 32/260 (12%), Positives = 78/260 (30%), Gaps = 60/260 (23%)

Query: 184 ICKMFKFLRVLDLGSLVLSQLPS--GIENLFFLRYLKLNIPSLKSLPSSFLSSI------ 235
            C   + +  L      L  +P+    +++  +  +  +   + S+       +      
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 236 -SNLYTLDM---PFSYIHHTADVFWEMNKLRHLNFG---LFTLPAYPRNDC----GSLEN 284
             N+ ++++     S      ++F   + L  +N     L  +P     D      +   
Sbjct: 432 GINVSSINLSNNQISKFP--KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 285 L-------NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESL 336
           L       N ++ L            LP L  +    DLS N  S         S+L+  
Sbjct: 490 LTSIDLRFNKLTKLSDDFR----ATTLPYLVGI----DLSYNSFSKFPTQPLNSSTLKGF 541

Query: 337 KLVNE----------------SKMPRLSKIVLDE-------YQFPPSLTHLSFSNTELME 373
            + N+                +  P L+++ +          +  P+++ L   +   + 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601

Query: 374 DPMPTLEKLPLLQVLKLKKN 393
             +  +       +  L  +
Sbjct: 602 IDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/272 (11%), Positives = 77/272 (28%), Gaps = 63/272 (23%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKL--------------------NIPSLKSLPSS 230
              +   S  ++ +   +  L  LR   +                         K+    
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 231 F--LSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFG---LFTLPAYPRN-----DC 279
           +  L  ++++   + P    +         + +++ +N       +      +     D 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLP---TFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 280 GSLENL-------NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLS 331
              E +       N +            L ++  L  L    +   NQ      +     
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPV----ETSLQKMKKLGML----ECLYNQLEGKLPAFGSEI 353

Query: 332 SLESLKL-VNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP-MPTLEKLPLLQVLK 389
            L SL L  N     ++++I  +   F   + +LSF++ +L   P +   + + ++  + 
Sbjct: 354 KLASLNLAYN-----QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 390 LKKN------SYLGRKLTCGSHGFPKLKVLHL 415
              N            L         +  ++L
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 63/244 (25%)

Query: 201 LSQLPSGIENLFFLRYLKL-NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE-- 257
                   +NL  L  +++ N P+L  LP+  L ++  +  +++  +       +  +  
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 258 -------MNKLRHLNFG---LFTLPAYPRNDCGSLENL-------NFISALHPRCCTPDI 300
                    K++ +  G   L T P         ++ L       N +            
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVET--SLQKMKKLGMLECLYNQLEGK------LPA 348

Query: 301 LGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVN-----------ESKMPRL 347
            G    L  L    +L+ NQ   + +        +E+L   +              +  +
Sbjct: 349 FGSEIKLASL----NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 348 SKIVLDE-----------YQFPP------SLTHLSFSNTELMEDPMPTLEKLPLLQVLKL 390
           S I                   P      +++ ++ SN ++ + P         L  + L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 391 KKNS 394
             N 
Sbjct: 465 MGNM 468

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 44/253 (17%)

Query: 149 NLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGI 208
            L  L +L +  L   ++         + PL           +  L+LG+       S +
Sbjct: 105 ALQNLTNLRELYLNEDNI-------SDISPLA------NLTKMYSLNLGANHNLSDLSPL 151

Query: 209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFG- 267
            N+  L YL +    +K +    ++++++LY+L + ++ I         +  L +     
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYV 208

Query: 268 --LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ- 320
             +  +   P  +   L +L    N I+ L P       L  L  L  L    ++  NQ 
Sbjct: 209 NQITDIT--PVANMTRLNSLKIGNNKITDLSP-------LANLSQLTWL----EIGTNQI 255

Query: 321 SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE 380
           S ++ ++  L+ L+ L + +     ++S I          L  L  +N +L  + M  + 
Sbjct: 256 SDIN-AVKDLTKLKMLNVGSN----QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 381 KLPLLQVLKLKKN 393
            L  L  L L +N
Sbjct: 309 GLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 37/213 (17%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
              L      ++Q+     +L       L   S+  + +     + ++  L +    +  
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 251 TADVFWEMNKLRHLNFG---LFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGR 303
                  +  L +LN     +  +   P ++   L NL    N I+ +         L  
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDISA-------LQN 108

Query: 304 LPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKL---VNESKMPRLSKIVLDEYQFPPS 360
           L NLR+L     L+ +       L  L+ + SL L    N S +  LS +          
Sbjct: 109 LTNLREL----YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM--------TG 156

Query: 361 LTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
           L +L+ + +++ +  +  +  L  L  L L  N
Sbjct: 157 LNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 33/206 (16%)

Query: 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT 251
           RV       ++++PS +        L+  +  L+ +     S   +L  +++  + +   
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 252 --ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309
             ADVF  + KL  +                 +E  N +  ++     P+    LPNL+ 
Sbjct: 70  IEADVFSNLPKLHEI----------------RIEKANNLLYIN-----PEAFQNLPNLQY 108

Query: 310 LRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFS 367
           L     +SN     L             L + +   +  + +              L  +
Sbjct: 109 L----LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLN 162

Query: 368 NTELMEDPMPTLEKLPLLQVLKLKKN 393
              + E          L ++     N
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 30/181 (16%)

Query: 201 LSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF-SYIHH-TADVFWE 257
           L  +     +NL  L+YL ++   +K LP            LD+     IH    + F  
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 258 M-NKLRHLNF---GLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPNLRK 309
           +  +   L     G+  +     N     E      N +  L       D+         
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-----NDVFHGASGPVI 206

Query: 310 LRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFS 367
           L    D+S  +  SL S  L  L  L +    N  K+P L K+         +L   S +
Sbjct: 207 L----DISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL--------VALMEASLT 254

Query: 368 N 368
            
Sbjct: 255 Y 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 37/230 (16%)

Query: 191 LRVLDL-GSLVLSQLPSGI-ENLFFLRYLKL-NIPSLKSLPSSFLSSISNLYTLDMPFSY 247
           L  +++  + VL  + + +  NL  L  +++    +L  +      ++ NL  L +  + 
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 248 IHH-TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN 306
           I H          +   L+                +++   I  +         +G    
Sbjct: 116 IKHLPDVHKIHSLQKVLLD----------------IQDNINIHTIERNS----FVGLSFE 155

Query: 307 LRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLS 365
              L     L+ N    +  S +  + L+ L L   S    L ++  D +        L 
Sbjct: 156 SVIL----WLNKNGIQEIHNSAFNGTQLDELNL---SDNNNLEELPNDVFHGASGPVILD 208

Query: 366 FSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
            S T +   P   LE L  L+         L             L    L
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASL 253

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 40/210 (19%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
            + LDL S  LS LPS     L  LR L LN   L++LP+     + NL TL +      
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV------ 92

Query: 250 HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLP 305
                    NKL+ L  G+F           +L  L    N + +L      P +   L 
Sbjct: 93  -------TDNKLQALPIGVFDQLV-------NLAELRLDRNQLKSLP-----PRVFDSLT 133

Query: 306 NLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTH 363
            L  L     L  N+  SL      KL+SL+ L+L   +++ R+ +   D+      L  
Sbjct: 134 KLTYL----SLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLT---ELKT 185

Query: 364 LSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393
           L   N +L   P    + L  L++L+L++N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 50/262 (19%), Positives = 85/262 (32%), Gaps = 63/262 (24%)

Query: 188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK-SLPSSF-LSSISNLYTLDMPF 245
              L  L L +  ++   SG +    L  L L+  SL   + +   L S S L  L++  
Sbjct: 76  LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 246 SYIHHTADVFWEMN--KLRHLNF------GLFTLPAYPRNDCGSLENL----NFISALHP 293
           + +     V   +    L  L+       G   +     + CG L++L    N IS    
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 294 RCCTPDILGRLPNLRKLRIHG-------------------DLSNNQ--SLLSKSLYKLSS 332
                  + R  NL  L +                     D+S N+     S+++   + 
Sbjct: 196 -------VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 333 LESLKLVN--------ESKMPRLSKIVLDEYQF-----------PPSLTHLSFSNTELME 373
           L+ L + +           +  L  + L E +F             +LT L  S      
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-Y 307

Query: 374 DPMPT-LEKLPLLQVLKLKKNS 394
             +P       LL+ L L  N+
Sbjct: 308 GAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 60/271 (22%), Positives = 87/271 (32%), Gaps = 53/271 (19%)

Query: 184 ICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTL 241
           +      L  LDL        +P    +   L  L L+  +    LP   L  +  L  L
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 242 DMPFSYIHHTA-DVFWEM-NKLRHLNFG--LFT--LPAY-PRNDCGSLENL-----NFIS 289
           D+ F+       +    +   L  L+     F+  +     +N   +L+ L      F  
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 290 ALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS----KSLYKLSSLESLKL------- 338
            +      P  L     L  L     LS N   LS     SL  LS L  LKL       
Sbjct: 409 KI------PPTLSNCSELVSL----HLSFNY--LSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 339 ---VNESKMPRLSKIVLDEYQF----PPS------LTHLSFSNTELMEDPMP-TLEKLPL 384
                   +  L  ++LD        P        L  +S SN  L    +P  + +L  
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLEN 515

Query: 385 LQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415
           L +LKL  NS+ G  +         L  L L
Sbjct: 516 LAILKLSNNSFSGN-IPAELGDCRSLIWLDL 545

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 46/293 (15%), Positives = 82/293 (27%), Gaps = 54/293 (18%)

Query: 137 SRKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDL 196
           + K   +L        ++ L  +NL +   +     ++    L         K L +  +
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL---------KSLMIEHV 312

Query: 197 GSLVLSQLPSGIENLFF-LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVF 255
            + V       + ++F  +    L+I     +      S S+   L+             
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF------------ 360

Query: 256 WEMNKLRHLNFGLF-TLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHG 314
              N      F    TL              N +           +     N+  L    
Sbjct: 361 -TQNVFTDSVFQGCSTLKRLQTLILQR----NGLKNF------FKVALMTKNMSSLETL- 408

Query: 315 DLSNNQ---SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTEL 371
           D+S N        ++     S+  L L +      L+  V      PP +  L   N  +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSN----MLTGSVFR--CLPPKVKVLDLHNNRI 462

Query: 372 MEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG----FPKLKVLHLKSMLW 420
           M  P   +  L  LQ L +  N     +L     G       L+ + L    W
Sbjct: 463 MSIPK-DVTHLQALQELNVASN-----QLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 9/236 (3%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH 249
           LRVL L    +  L   +      L YL ++   L+++    ++S+ +L      F  + 
Sbjct: 78  LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLP 137

Query: 250 HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309
                F  + KL  L                 L     +  L            L     
Sbjct: 138 VCK-EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 310 LRIHGDLSNNQSLLSKSLYKLSSLESLKLVN---ESKMPRLSKIVLDEYQFPPSLTHLSF 366
             +H     N     +    +++L  L+L N     +  +     L E    P+L +++ 
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 367 SNTELMEDPMPTLEKL---PLLQVLKLKKNSYLGR-KLTCGSHGFPKLKVLHLKSM 418
            + E        L +      ++ L +   +   R      ++    LK L ++ +
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 53/247 (21%), Positives = 82/247 (33%), Gaps = 52/247 (21%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
              ++     L+ LP  +        L L+   L +   + L   + L  L++  + +  
Sbjct: 12  HLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT- 68

Query: 251 TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKL 310
              V   +  L  L             D       N + +L      P +   LP L  L
Sbjct: 69  KLQVDGTLPVLGTL-------------DLSH----NQLQSL------PLLGQTLPALTVL 105

Query: 311 RIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSN 368
               D+S N+  SL   +L  L  L+ L L   +++  L   +L      P L  LS +N
Sbjct: 106 ----DVSFNRLTSLPLGALRGLGELQELYL-KGNELKTLPPGLLTPT---PKLEKLSLAN 157

Query: 369 TELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGF---PKLKVLHLKS-------- 417
             L E P   L  L  L  L L++N      L     GF     L    L          
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQEN-----SLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212

Query: 418 MLWLEEW 424
           +L+   W
Sbjct: 213 ILYFRRW 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 44/208 (21%)

Query: 188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY 247
                 +  G   ++       +L  +  L      + ++    +  ++NL  L++  + 
Sbjct: 18  LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 248 IHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL 307
           I         + K+  L                   + N +  +         +  L ++
Sbjct: 75  ITDL-APLKNLTKITELEL-----------------SGNPLKNVSA-------IAGLQSI 109

Query: 308 RKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNE--SKMPRLSKIVLDEYQFPPSLTHLS 365
           + L    DL++ Q      L  LS+L+ L L     + +  L+ +         +L +LS
Sbjct: 110 KTL----DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL--------TNLQYLS 157

Query: 366 FSNTELMEDPMPTLEKLPLLQVLKLKKN 393
             N ++ +  +  L  L  L  LK   N
Sbjct: 158 IGNAQVSD--LTPLANLSKLTTLKADDN 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 42/197 (21%)

Query: 145 TANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL 204
           TAN+  ++++SL    L        +     L  ++          ++ L + ++  +  
Sbjct: 35  TANITEAQMNSLTYITLA-------NINVTDLTGIEY------AHNIKDLTINNIHATNY 81

Query: 205 PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRH 263
            + I  L  L  L++    + S     LS +++L  LD+  S    +       + K+  
Sbjct: 82  -NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 264 LNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLL 323
           ++                L     I+ + P       L  LP L+ L    ++  +    
Sbjct: 141 ID----------------LSYNGAITDIMP-------LKTLPELKSL----NIQFDGVHD 173

Query: 324 SKSLYKLSSLESLKLVN 340
            + +     L  L   +
Sbjct: 174 YRGIEDFPKLNQLYAFS 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 38/219 (17%)

Query: 191 LRVLDLGSLVLSQLPSGI-ENLFFLRYLKLNI-PSLKSLPSSFLSSISNLYTLDM----P 244
            + L L    L  +PS    NL  +  + ++I  +L+ L S    ++S +  +++     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 245 FSYIHHTADVFWEMNKLRHLNF---GLFTLPAYPRNDCGSLENL--------NFISALHP 293
            +YI    D   E+  L+ L     GL   P   +    S +           +++++  
Sbjct: 93  LTYID--PDALKELPLLKFLGIFNTGLKMFPDLTK--VYSTDIFFILEITDNPYMTSIPV 148

Query: 294 RCCTPDILGRLPNLRKLRIHGDLSNNQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVL 352
                        L    +   L NN  + +    +  + L+++ L   +K   L+ I  
Sbjct: 149 --------NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL---NKNKYLTVI-- 195

Query: 353 DEYQF---PPSLTHLSFSNTELMEDPMPTLEKLPLLQVL 388
           D+  F       + L  S T +   P   LE L  L   
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 55/257 (21%)

Query: 142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL 201
           K +T  V  +EL+S++            +S+   +  +           +  L L    L
Sbjct: 34  KSVTDAVTQNELNSIDQIIAN-------NSDIKSVQGIQY------LPNVTKLFLNGNKL 80

Query: 202 SQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL 261
           + +   + NL  L +L L+   +K L  S L  +  L +L +  + I    +    + +L
Sbjct: 81  TDI-KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGI-SDINGLVHLPQL 136

Query: 262 RHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS 321
             L                 L N N I+ +         L RL  L  L     L +NQ 
Sbjct: 137 ESLY----------------LGN-NKITDITV-------LSRLTKLDTL----SLEDNQI 168

Query: 322 LLSKSLYKLSSLESLKLVNE--SKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL 379
                L  L+ L++L L     S +  L+ +         +L  L   + E +  P+   
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISDLRALAGL--------KNLDVLELFSQECLNKPINHQ 220

Query: 380 EKLPLLQVLKLKKNSYL 396
             L +   +K    S +
Sbjct: 221 SNLVVPNTVKNTDGSLV 237

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 27/141 (19%)

Query: 298 PDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEY 355
           P        LR++    DLSNNQ   L   +   L SL SL L   +K+  L K + +  
Sbjct: 49  PGAFSPYKKLRRI----DLSNNQISELAPDAFQGLRSLNSLVL-YGNKITELPKSLFEGL 103

Query: 356 QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG----FPKLK 411
               SL  L  +  ++    +   + L  L +L L  N     KL   + G       ++
Sbjct: 104 ---FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-----KLQTIAKGTFSPLRAIQ 155

Query: 412 VLHLK--------SMLWLEEW 424
            +HL          + WL ++
Sbjct: 156 TMHLAQNPFICDCHLKWLADY 176

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 36/156 (23%)

Query: 192 RVLDLGSLVLSQLPSGI-ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
             + L    +  +P G       LR + L+   +  L       + +L +L +       
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL------- 87

Query: 251 TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL----NFISALHPRCCTPDILGRLPN 306
                   NK+  L   LF           SL+ L    N I+ L       D    L N
Sbjct: 88  ------YGNKITELPKSLF-------EGLFSLQLLLLNANKINCLR-----VDAFQDLHN 129

Query: 307 LRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVN 340
           L  L     L +N+  ++   +   L +++++ L  
Sbjct: 130 LNLL----SLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 31/155 (20%)

Query: 284 NLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQ--SLLSKSLYKLSSLESLKLVNE 341
           N N  + L        I  +LP LRK+    + SNN+   +   +    S +  + L   
Sbjct: 40  NNNEFTVLEAT----GIFKKLPQLRKI----NFSNNKITDIEEGAFEGASGVNEILL-TS 90

Query: 342 SKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT 401
           +++  +   +        SL  L   +  +      +   L  +++L L  N     ++T
Sbjct: 91  NRLENVQHKMFKGL---ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-----QIT 142

Query: 402 CGSHG----FPKLKVLHLKS--------MLWLEEW 424
             + G       L  L+L +        + WL EW
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEW 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.64
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.38

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=6.8e-32  Score=291.25  Aligned_cols=322  Identities=16%  Similarity=0.121  Sum_probs=187.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccc-ccCEEEccCCCCc-cCchhHHhc--
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLF-FLRYLKLNIPSLK-SLPSSFLSS--  234 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~-~L~~L~l~~~~i~-~lp~~~~~~--  234 (492)
                      +++|++|++++|...   ...+...+.++++|++|++++|.++ .+|..+..++ +|++|++++|.+. .+|..+ ..  
T Consensus       317 l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~  392 (768)
T 3rgz_A          317 CSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNP  392 (768)
T ss_dssp             CTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCST
T ss_pred             CCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhcc
Confidence            445555555544432   1123334555556666666655554 5555554444 4555555544444 333333 22  


Q ss_pred             CCCccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCcccceE
Q 045751          235 ISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLPNLRKL  310 (492)
Q Consensus       235 l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~~L~~L  310 (492)
                      +++|++|++++|.+. .+|..++++++|+.|++++|.+.+.+|..++.+++|+.+++++   ....+.. +..+++|+.|
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEE
Confidence            445555555555443 4555666677777777777766666666666666777766653   2223333 6666666667


Q ss_pred             EeeeccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecc
Q 045751          311 RIHGDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNT  369 (492)
Q Consensus       311 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~  369 (492)
                      ++++|  ...+.+|..+..+++|+.|+++++.          .+++|+.|++           .+..+ ++|++|++++|
T Consensus       472 ~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N  548 (768)
T 3rgz_A          472 ILDFN--DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTN  548 (768)
T ss_dssp             ECCSS--CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSS
T ss_pred             EecCC--cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCC
Confidence            66666  3444556666666666666666522          3455666655           35566 67777777777


Q ss_pred             cCCCCCccc----------------------------------------------------------------------c
Q 045751          370 ELMEDPMPT----------------------------------------------------------------------L  379 (492)
Q Consensus       370 ~l~~~~~~~----------------------------------------------------------------------l  379 (492)
                      .+.+..|..                                                                      +
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            665443322                                                                      2


Q ss_pred             cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCc
Q 045751          380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFK  459 (492)
Q Consensus       380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  459 (492)
                      +.+++|+.|++++|.+++.. +..++.+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+.++++|+
T Consensus       629 ~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hccccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            33566777777777777654 55677778888888888744447777788888888888888877777888888888888


Q ss_pred             EEEecCCC---------------------------HHHHHHhcccCCCceeeeecCCCC
Q 045751          460 KLELWRPQ---------------------------PELRQKLRDFKDKEQYNIQLYPYG  491 (492)
Q Consensus       460 ~L~l~~c~---------------------------~~~~~~~~~~~~~~~~~i~~ip~~  491 (492)
                      +|++++|+                           .-+ ..|....+++|++++|+|..
T Consensus       708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-------------
T ss_pred             EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCcccc
Confidence            88887752                           001 25666789999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=4.9e-30  Score=270.08  Aligned_cols=325  Identities=19%  Similarity=0.118  Sum_probs=201.1

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~  213 (492)
                      .+..++++.+..+.+..++...+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.+ |..|+.+++
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            34567777777666666665555  677777777777654    24455667777777777777777644 566777777


Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCccc--chHHHhhcccccccccccccccCCCCCccccCCc--------
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH--HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLE--------  283 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~--------  283 (492)
                      |++|++++|.+..++...|+++++|++|++++|.+.  .+|..++++++|++|++++|.+.+..|..++.++        
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            777777777776555332367777777777777664  3566666777777777766665543333222111        


Q ss_pred             -------------------ccceeecCCC---------------------------------------------------
Q 045751          284 -------------------NLNFISALHP---------------------------------------------------  293 (492)
Q Consensus       284 -------------------~L~~l~~~~~---------------------------------------------------  293 (492)
                                         +|+.+++++.                                                   
T Consensus       186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  265 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE  265 (606)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred             eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence                               1222221110                                                   


Q ss_pred             -----------------------------------------------------Cccchh--------------------h
Q 045751          294 -----------------------------------------------------RCCTPD--------------------I  300 (492)
Q Consensus       294 -----------------------------------------------------~~~~~~--------------------~  300 (492)
                                                                           ...++.                    .
T Consensus       266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~  345 (606)
T 3vq2_A          266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK  345 (606)
T ss_dssp             EEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECC
T ss_pred             eeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchh
Confidence                                                                 000011                    0


Q ss_pred             hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe------------ecCCCCC
Q 045751          301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL------------DEYQFPP  359 (492)
Q Consensus       301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l------------~~~~lp~  359 (492)
                      +..+++|+.|++++|.-......+..+..+++|+.|+++++.         .+++|+.|++            .+..+ +
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-E  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-T
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-c
Confidence            223334444444444101111125666777777777777632         4567777766            23456 7


Q ss_pred             CceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEE
Q 045751          360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLI  438 (492)
Q Consensus       360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~  438 (492)
                      +|++|++++|.+.+..+..++++++|+.|++++|.+.+...+..++.+++|+.|++++| .++.+ |..++.+++|+.|+
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEE
Confidence            78888888887766677777788888888888777765444556677788888888887 55544 34567778888888


Q ss_pred             EeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          439 IDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       439 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +++|......|..+.++++|++|++++|.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            88877666667777777778888777775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.1e-29  Score=258.03  Aligned_cols=323  Identities=16%  Similarity=0.136  Sum_probs=257.4

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~  213 (492)
                      .+.+++++.+..+.+....+..+  +++|++|++++|...   ....+..|.++++|++|++++|.++.+ |..++.+++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            45789999999888887766666  899999999998764   234567789999999999999999844 788999999


Q ss_pred             cCEEEccCCCCcc-Cchh-HHhcCCCccEEecCCCcccch-HHH-hhcccccccccccccccCCCCCccccCC--cccce
Q 045751          214 LRYLKLNIPSLKS-LPSS-FLSSISNLYTLDMPFSYIHHT-ADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSL--ENLNF  287 (492)
Q Consensus       214 L~~L~l~~~~i~~-lp~~-~~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~~  287 (492)
                      |++|++++|.+.. +|.. .|+++++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+..+  .+|+.
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            9999999999984 4433 238999999999999988777 544 7899999999999999988888888775  67888


Q ss_pred             eecCCC--Cccchh--------hhCCCcccceEEeeeccCcchhhHHHHhhcC---CCCCeEEeecCC------------
Q 045751          288 ISALHP--RCCTPD--------ILGRLPNLRKLRIHGDLSNNQSLLSKSLYKL---SSLESLKLVNES------------  342 (492)
Q Consensus       288 l~~~~~--~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~------------  342 (492)
                      +++++.  ......        .+..+++|+.|++++|  ...+..+..+...   ++|+.|+++++.            
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence            888741  111110        0335688999999999  5666777666554   778888877421            


Q ss_pred             ----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCccc
Q 045751          343 ----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT  401 (492)
Q Consensus       343 ----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  401 (492)
                                .+++|+.|++           +++.+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~  340 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-S  340 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-G
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-h
Confidence                      1257777777           46778 89999999999998888888999999999999999886533 5


Q ss_pred             ccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          402 CGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       402 ~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      ..++.+++|+.|++++| .++.+ |..+..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus       341 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            56788999999999998 66766 5678999999999999998665444467899999999999865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=255.11  Aligned_cols=312  Identities=21%  Similarity=0.187  Sum_probs=252.9

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccC
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNI  221 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~  221 (492)
                      .+.........++ ..+.++++.|++++|.+.    ...+..|.++++|++|+|++|.++.+ |..|..+++|++|++++
T Consensus        15 ~v~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFVAVP-EGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCSSCC-SCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcCcCC-CCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            4444433444444 334779999999999886    35567889999999999999999855 78899999999999999


Q ss_pred             CCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccch
Q 045751          222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTP  298 (492)
Q Consensus       222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~  298 (492)
                      |.+..+|...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|..+..+++|+.|++++  ....+.
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            999999988779999999999999988766 45689999999999999999888888899999999999974  344555


Q ss_pred             hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccc
Q 045751          299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT  378 (492)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~  378 (492)
                      ..+..+++|+.|++++|  ......+..+..+++|+.|++++   ++.+..+.-..... .+|++|++++|.+.......
T Consensus       170 ~~l~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~---~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~  243 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLEISH---WPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLA  243 (477)
T ss_dssp             HHHTTCTTCCEEEEESC--CCCEECTTCSCSCTTCCEEEEEC---CTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHH
T ss_pred             hHhcccCCCcEEeCCCC--cCcEeChhhcccCcccceeeCCC---CccccccCcccccC-ccccEEECcCCcccccCHHH
Confidence            55899999999999998  34444556788899999999994   55555554333344 68999999999987666677


Q ss_pred             ccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCC
Q 045751          379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKR  457 (492)
Q Consensus       379 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  457 (492)
                      +.++++|+.|++++|.+.+.. ...+..+++|+.|++++| .+..+ +..+..+++|+.|++++|......+..+..+++
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             hcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            899999999999999887533 445788999999999998 66655 556889999999999999766544456789999


Q ss_pred             CcEEEecCCC
Q 045751          458 FKKLELWRPQ  467 (492)
Q Consensus       458 L~~L~l~~c~  467 (492)
                      |++|++++++
T Consensus       322 L~~L~l~~N~  331 (477)
T 2id5_A          322 LETLILDSNP  331 (477)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEccCCC
Confidence            9999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=261.22  Aligned_cols=323  Identities=19%  Similarity=0.128  Sum_probs=202.7

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhcccccc
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFL  214 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L  214 (492)
                      +..++++.+..+.+..+....+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.++ ..|+.+++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            4456677776555655555455  677777777766554    234455666666666666666666443 556666666


Q ss_pred             CEEEccCCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccC-----------
Q 045751          215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-----------  281 (492)
Q Consensus       215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-----------  281 (492)
                      ++|++++|.+..++...|+++++|++|++++|.+..  +|..++++++|++|++++|.+.+..|..++.           
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            666666666665554222666666666666665543  4555666666666666666554332222222           


Q ss_pred             --------------------------------------------------------------------------------
Q 045751          282 --------------------------------------------------------------------------------  281 (492)
Q Consensus       282 --------------------------------------------------------------------------------  281 (492)
                                                                                                      
T Consensus       183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence                                                                                            


Q ss_pred             ------------------CcccceeecCC--CCccchhhh----------------------------------------
Q 045751          282 ------------------LENLNFISALH--PRCCTPDIL----------------------------------------  301 (492)
Q Consensus       282 ------------------l~~L~~l~~~~--~~~~~~~~l----------------------------------------  301 (492)
                                        +++|+.+++++  ....+.. +                                        
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccCCccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence                              22223332221  0000000 1                                        


Q ss_pred             --CCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe------------ecCCCC
Q 045751          302 --GRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL------------DEYQFP  358 (492)
Q Consensus       302 --~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l------------~~~~lp  358 (492)
                        ..+++|+.|++++|........+..+..+++|+.|+++++.         .+++|+.|++            .+..+ 
T Consensus       342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-  420 (570)
T 2z63_A          342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-  420 (570)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-
T ss_pred             ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-
Confidence              22334444444444111111124556667777777776532         5667777776            24466 


Q ss_pred             CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEE
Q 045751          359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECL  437 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L  437 (492)
                      ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..++..+..+++|+.|++++| .++.+ |..++.+++|+.|
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEE
Confidence            788888888888777777788888999999999888764445667788999999999998 56655 6678899999999


Q ss_pred             EEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          438 IIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       438 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      ++++|......|..+.++++|++|++++|+
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            999998666556678899999999999865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=2.4e-29  Score=271.35  Aligned_cols=318  Identities=17%  Similarity=0.145  Sum_probs=180.3

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccccc
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFL  214 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L  214 (492)
                      ..+++++.+..+......+. +  +++|++|++++|...    ...+..+.++++|++|++++|.++ .+|..  .+++|
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L  271 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL  271 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence            45566666665554443333 3  666666666666654    244556666666666666666554 22221  34444


Q ss_pred             CEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhcccccccccccccccCCCCCcc-ccCCcccceeecC
Q 045751          215 RYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRND-CGSLENLNFISAL  291 (492)
Q Consensus       215 ~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~l~~~  291 (492)
                      ++|++++|.+. .+|..++..+++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++.+++|+.++++
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            44444444444 444433111244444444444332 33333444444444444444443334433 3344444444443


Q ss_pred             CC---CccchhhhCCCc-ccceEEeeeccCcchhhHHHHhhc--CCCCCeEEeecCC----------CCCCccEEEe---
Q 045751          292 HP---RCCTPDILGRLP-NLRKLRIHGDLSNNQSLLSKSLYK--LSSLESLKLVNES----------KMPRLSKIVL---  352 (492)
Q Consensus       292 ~~---~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~----------~~~~L~~L~l---  352 (492)
                      +.   ...+.. +..++ +|+.|++++|  ...+.++..+..  +++|+.|+++++.          .+++|+.|++   
T Consensus       352 ~n~l~~~~p~~-l~~l~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          352 FNEFSGELPES-LTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             SSEEEECCCTT-HHHHTTTCSEEECCSS--EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCccCccccHH-HHhhhcCCcEEEccCC--CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence            21   111122 22222 3333333333  122222222222  3333333333210          2333333333   


Q ss_pred             --------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE
Q 045751          353 --------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW  424 (492)
Q Consensus       353 --------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  424 (492)
                              .++.+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|.....+
T Consensus       429 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          429 YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcC
Confidence                    45667 78888888888888788888888888888888888887654 556778889999999988544477


Q ss_pred             EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          425 TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       425 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      |..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            8888889999999999998887888889999999999998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.4e-29  Score=265.37  Aligned_cols=316  Identities=14%  Similarity=0.116  Sum_probs=221.6

Q ss_pred             CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCC-----C-----------------------------------
Q 045751          139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHH-----L-----------------------------------  176 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~-----~-----------------------------------  176 (492)
                      .+++.|.+..+......+..+  +++|++|++++|....     .                                   
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            678999998777765555666  9999999999884300     0                                   


Q ss_pred             ---------------------------------CchhHHHHhccCCcEEEEEecCCcCCC------------------Cc
Q 045751          177 ---------------------------------DPLDCEKICKMFKFLRVLDLGSLVLSQ------------------LP  205 (492)
Q Consensus       177 ---------------------------------~~~~~~~~~~~~~~L~~L~L~~~~l~~------------------l~  205 (492)
                                                       .....+..+.++++|++|+|++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                                             000144568899999999999999997                  99


Q ss_pred             hhhc--cccccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCc-cc--chHHHhhcc------cccccccccccccCC
Q 045751          206 SGIE--NLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSY-IH--HTADVFWEM------NKLRHLNFGLFTLPA  273 (492)
Q Consensus       206 ~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~~~~  273 (492)
                      ..++  ++++|++|++++|.+. .+|..+ +++++|++|++++|. +.  .+|..++.+      ++|++|++++|.+. 
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            9998  9999999999999877 888888 999999999999997 86  489888887      99999999999997 


Q ss_pred             CCCc--cccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCC-CCeEEeecCC------
Q 045751          274 YPRN--DCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSS-LESLKLVNES------  342 (492)
Q Consensus       274 ~~p~--~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~------  342 (492)
                      .+|.  .++++++|+.+++++  ....++. ++.+++|+.|++++|   ....+|..+..+++ |+.|+++++.      
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~L~~N---~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~  394 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN---QITEIPANFCGFTEQVENLSFAHNKLKYIPN  394 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCC-CEEEEEESEEECCSS---EEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhh-hCCCCCCCEEECCCC---ccccccHhhhhhcccCcEEEccCCcCcccch
Confidence            8898  899999999999985  2213335 888899999999988   23377778888888 9999988732      


Q ss_pred             -----CCCCccEEEe-----------ecC-------CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCc
Q 045751          343 -----KMPRLSKIVL-----------DEY-------QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRK  399 (492)
Q Consensus       343 -----~~~~L~~L~l-----------~~~-------~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  399 (492)
                           .+++|+.|++           .+.       .+ ++|++|++++|.+.......+..+++|+.|++++|.++...
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence                 1235666766           122       34 47777777777765433333445666666666666655211


Q ss_pred             ccccCC-------CCccccEEeecccCCcceEEEccC--ccccccEEEEeecCCcCccchhccCCCCCcEEEec
Q 045751          400 LTCGSH-------GFPKLKVLHLKSMLWLEEWTMGTG--AMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELW  464 (492)
Q Consensus       400 ~~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  464 (492)
                       ...+.       .+++|+.|++++| .++.+|..+.  .+++|+.|++++|.... +|..+.++++|++|+++
T Consensus       474 -~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          474 -KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             -SSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             -HHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence             11111       1125555555555 4445554444  55555555555555443 55555555555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=9e-29  Score=266.06  Aligned_cols=155  Identities=14%  Similarity=0.185  Sum_probs=131.1

Q ss_pred             HHHHhccCCcEEEEEecCCcCCC------------------Cchhhc--cccccCEEEccCCCCc-cCchhHHhcCCCcc
Q 045751          181 CEKICKMFKFLRVLDLGSLVLSQ------------------LPSGIE--NLFFLRYLKLNIPSLK-SLPSSFLSSISNLY  239 (492)
Q Consensus       181 ~~~~~~~~~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~  239 (492)
                      .+..+.++++|++|+|++|.++.                  +|..++  .+++|++|++++|.+. .+|..+ +++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence            45678899999999999999987                  898887  9999999999999876 888887 9999999


Q ss_pred             EEecCCCc-cc--chHHHhhccc-------ccccccccccccCCCCCc--cccCCcccceeecCC-CCccchhhhCCCcc
Q 045751          240 TLDMPFSY-IH--HTADVFWEMN-------KLRHLNFGLFTLPAYPRN--DCGSLENLNFISALH-PRCCTPDILGRLPN  306 (492)
Q Consensus       240 ~L~L~~~~-l~--~lp~~~~~l~-------~L~~L~L~~~~~~~~~p~--~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~  306 (492)
                      +|++++|. +.  .+|..+++++       +|++|++++|.+. .+|.  .++++++|+.|++++ ....++. ++.+++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~-~~~L~~  596 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVK  596 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCC-CCTTSE
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchh-hcCCCc
Confidence            99999997 76  4898888887       9999999999987 8888  899999999999984 2224445 888999


Q ss_pred             cceEEeeeccCcchhhHHHHhhcCCC-CCeEEeecC
Q 045751          307 LRKLRIHGDLSNNQSLLSKSLYKLSS-LESLKLVNE  341 (492)
Q Consensus       307 L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~  341 (492)
                      |+.|++++|  ... .+|..+..+++ |+.|+++++
T Consensus       597 L~~L~Ls~N--~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          597 LTDLKLDYN--QIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             ESEEECCSS--CCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             ceEEECcCC--ccc-cchHHHhhccccCCEEECcCC
Confidence            999999988  333 77777888888 888888873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.2e-28  Score=260.11  Aligned_cols=315  Identities=16%  Similarity=0.168  Sum_probs=221.2

Q ss_pred             CCCCeeEEEEecCCCCc------------------cccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEE
Q 045751          137 SRKMIKRLTANVNLSEL------------------DSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLD  195 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~------------------~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  195 (492)
                      ...+++.+.+..+....                  ++....   +++|++|++++|....    ..+..+.++++|++|+
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence            34567777777666655                  332211   6778888887776541    3446677777777777


Q ss_pred             ecCCc-CC--CCchhhccc------cccCEEEccCCCCccCch--hHHhcCCCccEEecCCCccc-chHHHhhccccccc
Q 045751          196 LGSLV-LS--QLPSGIENL------FFLRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRH  263 (492)
Q Consensus       196 L~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~  263 (492)
                      +++|. ++  .+|..++.+      ++|++|++++|.++.+|.  .+ +++++|++|++++|.+. .+| .++.+++|++
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            77776 66  367766665      777777777777777776  55 77777777777777776 777 6777777777


Q ss_pred             ccccccccCCCCCccccCCcc-cceeecCC--CCccchhhhCCCc--ccceEEeeeccCcchhhHHHHhh-------cCC
Q 045751          264 LNFGLFTLPAYPRNDCGSLEN-LNFISALH--PRCCTPDILGRLP--NLRKLRIHGDLSNNQSLLSKSLY-------KLS  331 (492)
Q Consensus       264 L~L~~~~~~~~~p~~~~~l~~-L~~l~~~~--~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~l~-------~l~  331 (492)
                      |++++|.+. .+|..+..+++ |+.|++++  ....+.. +..++  +|+.|++++|  ...+..|..+.       .++
T Consensus       358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCC
T ss_pred             EECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCC--cCCCcchhhhcccccccccCC
Confidence            777777765 66777777777 77777763  2222222 44433  6777777776  45555555555       556


Q ss_pred             CCCeEEeecCC----------CCCCccEEEe---ecCCCC--------------CCceEEEEecccCCCCCccccc--CC
Q 045751          332 SLESLKLVNES----------KMPRLSKIVL---DEYQFP--------------PSLTHLSFSNTELMEDPMPTLE--KL  382 (492)
Q Consensus       332 ~L~~L~l~~~~----------~~~~L~~L~l---~~~~lp--------------~~L~~L~L~~~~l~~~~~~~l~--~l  382 (492)
                      +|+.|+++++.          .+++|+.|++   .+..+|              ++|++|++++|.+. ..+..+.  .+
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l  512 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL  512 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence            67777776522          3556666665   111111              28999999999986 5666676  89


Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecc------cCCcceEEEccCccccccEEEEeecCCcCccchhccCCC
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVK  456 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~  456 (492)
                      ++|+.|++++|.+++  ++..+..+++|+.|++++      |.....+|..++.+++|+.|++++|.. +.+|..+.  +
T Consensus       513 ~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~  587 (636)
T 4eco_A          513 PYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P  587 (636)
T ss_dssp             TTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred             CCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence            999999999999886  466677899999999954      434557788889999999999999987 78888765  7


Q ss_pred             CCcEEEecCCC
Q 045751          457 RFKKLELWRPQ  467 (492)
Q Consensus       457 ~L~~L~l~~c~  467 (492)
                      +|+.|++++|+
T Consensus       588 ~L~~L~Ls~N~  598 (636)
T 4eco_A          588 NISVLDIKDNP  598 (636)
T ss_dssp             TCCEEECCSCT
T ss_pred             cCCEEECcCCC
Confidence            99999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.6e-28  Score=244.20  Aligned_cols=302  Identities=20%  Similarity=0.161  Sum_probs=201.8

Q ss_pred             CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751          139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR  215 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~  215 (492)
                      ..++++.+..+.+..++...+  +++|++|+++++.+.    ...+..|..+++|++|++++|.++.++ ..++.+++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            456666666554555554444  666666666666654    233445666666666666666666443 4456666666


Q ss_pred             EEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCCCC
Q 045751          216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR  294 (492)
Q Consensus       216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~  294 (492)
                      +|++++|.+..+|..+|+++++|++|++++|.+..++ ..+..+++|++|++++|.+.+.   .++.+++|+.+++++. 
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n-  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN-  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS-
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc-
Confidence            6666666666666665566666666666666665553 3366666666666666665432   2334556666666431 


Q ss_pred             ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751          295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED  374 (492)
Q Consensus       295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~  374 (492)
                       .+.. +...++|+.|++++|.   ...++.  ...++|+.|+++++    .+.... ++..+ ++|++|++++|.+.+.
T Consensus       197 -~l~~-~~~~~~L~~L~l~~n~---l~~~~~--~~~~~L~~L~l~~n----~l~~~~-~l~~l-~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          197 -LLST-LAIPIAVEELDASHNS---INVVRG--PVNVELTILKLQHN----NLTDTA-WLLNY-PGLVEVDLSYNELEKI  263 (390)
T ss_dssp             -CCSE-EECCSSCSEEECCSSC---CCEEEC--CCCSSCCEEECCSS----CCCCCG-GGGGC-TTCSEEECCSSCCCEE
T ss_pred             -cccc-cCCCCcceEEECCCCe---eeeccc--cccccccEEECCCC----CCcccH-HHcCC-CCccEEECCCCcCCCc
Confidence             2222 3444566666666662   111121  12356666666642    122111 57778 8999999999999877


Q ss_pred             CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751          375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS  454 (492)
Q Consensus       375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~  454 (492)
                      .+..+.++++|+.|++++|.+.+  ++.....+++|+.|++++| .++.+|..+..+++|+.|++++|+.. .+|  +..
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~  337 (390)
T 3o6n_A          264 MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LST  337 (390)
T ss_dssp             ESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCT
T ss_pred             ChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chh
Confidence            78889999999999999998865  3445678999999999998 77788888889999999999999855 454  678


Q ss_pred             CCCCcEEEecCCC
Q 045751          455 VKRFKKLELWRPQ  467 (492)
Q Consensus       455 l~~L~~L~l~~c~  467 (492)
                      +++|++|++++++
T Consensus       338 ~~~L~~L~l~~N~  350 (390)
T 3o6n_A          338 HHTLKNLTLSHND  350 (390)
T ss_dssp             TCCCSEEECCSSC
T ss_pred             hccCCEEEcCCCC
Confidence            9999999999987

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=2.7e-28  Score=256.79  Aligned_cols=247  Identities=19%  Similarity=0.182  Sum_probs=119.3

Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP  293 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~  293 (492)
                      |+.|++++|.+..++...|+++++|++|++++|.+..+|..+..+++|++|++++|.+.+..|..+..+++|+.+++++.
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            33344444444444443335555555555555555555555555555555555555554444444555555555555431


Q ss_pred             ---CccchhhhCCCcccceEEeeeccCcchhhH--HHHhhcCCCCCeEEeecCC----------CCCCccEEEe------
Q 045751          294 ---RCCTPDILGRLPNLRKLRIHGDLSNNQSLL--SKSLYKLSSLESLKLVNES----------KMPRLSKIVL------  352 (492)
Q Consensus       294 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l------  352 (492)
                         ...+...++.+++|++|++++|.  .....  +..+..+++|+.|+++++.          .+++|+.|++      
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CcccccchhhhhccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence               11222224445555555555542  11111  3344455555555554421          3344444444      


Q ss_pred             ------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCccc--ccCCCCccccEEeecccCCcceE
Q 045751          353 ------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT--CGSHGFPKLKVLHLKSMLWLEEW  424 (492)
Q Consensus       353 ------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~l  424 (492)
                            .+..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+..++  ..+..+++|+.|++++| .++.+
T Consensus       414 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~  491 (606)
T 3t6q_A          414 VKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI  491 (606)
T ss_dssp             CCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEE
T ss_pred             CcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCcc
Confidence                  13445 5666666666665555555556666666666666655432211  22445555556666555 33333


Q ss_pred             -EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecC
Q 045751          425 -TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWR  465 (492)
Q Consensus       425 -~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  465 (492)
                       |..++.+++|+.|++++|......|..+.++++| .|++++
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence             3345555555555555555444444444444444 444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=6.3e-28  Score=253.97  Aligned_cols=108  Identities=21%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             CCceEEEEecccCCCCCcc-cccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc-eEE--EccCccccc
Q 045751          359 PSLTHLSFSNTELMEDPMP-TLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-EWT--MGTGAMPKL  434 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~--~~~~~l~~L  434 (492)
                      ++|++|++++|.+.+..+. .+.++++|+.|++++|.+.+.. +..++.+++|+.|++++|.... .++  ..+..+++|
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            3444444444443332222 2444455555555544443322 2334556666666666652222 121  235566777


Q ss_pred             cEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          435 ECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       435 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +.|++++|......|..+..+++|++|++++|.
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            777777776555556667777777777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=4.1e-28  Score=254.47  Aligned_cols=289  Identities=19%  Similarity=0.200  Sum_probs=173.6

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .++++.+++.++...    .+++..+.++++|++|+|++|.++.++ ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus        50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            344555555544433    233344445555555555555554332 344555555555555555554444433555555


Q ss_pred             cEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS  317 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  317 (492)
                      ++|++++|.+..+|.. ++++++|++|++++|.+.+..|..++.+++|+.|++++..-.... ++.+++|+.|++++|. 
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~-  203 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL-  203 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc-
Confidence            5555555555444443 244555555555555554444444555555555555431111111 3344445555554441 


Q ss_pred             cchhhHHHHhhcCCCCCeEEeecCC-------CCCCccEEEe---------ecCCCCCCceEEEEecccCCCCCcccccC
Q 045751          318 NNQSLLSKSLYKLSSLESLKLVNES-------KMPRLSKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEK  381 (492)
Q Consensus       318 ~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~  381 (492)
                       ..     .+...++|+.|+++++.       ..++|+.|++         ++..+ ++|++|++++|.+.+..+..+++
T Consensus       204 -l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          204 -LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             -CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTT
T ss_pred             -cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhcC
Confidence             11     11223344444444311       2233444443         56778 89999999999998888888999


Q ss_pred             CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEE
Q 045751          382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKL  461 (492)
Q Consensus       382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  461 (492)
                      +++|+.|++++|.+++  ++.....+++|+.|+|++| .+..+|..++.+++|+.|++++|... .+|  +..+++|+.|
T Consensus       277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L  350 (597)
T 3oja_B          277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNL  350 (597)
T ss_dssp             CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEE
T ss_pred             ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEE
Confidence            9999999999998876  3555677999999999998 67788888889999999999999865 344  6788999999


Q ss_pred             EecCCC
Q 045751          462 ELWRPQ  467 (492)
Q Consensus       462 ~l~~c~  467 (492)
                      ++++|+
T Consensus       351 ~l~~N~  356 (597)
T 3oja_B          351 TLSHND  356 (597)
T ss_dssp             ECCSSC
T ss_pred             EeeCCC
Confidence            999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=8.3e-28  Score=250.00  Aligned_cols=321  Identities=20%  Similarity=0.157  Sum_probs=229.4

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccccc
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFL  214 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L  214 (492)
                      ...++++.+..+.+....+..+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.++. .++.+++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            4689999999888877776666  899999999999876    3556778999999999999999997665 48999999


Q ss_pred             CEEEccCCCCcc--CchhHHhcCCCccEEecCCCc-ccchH-HHhhcccccccccccccccCCCCCccccCCcccceeec
Q 045751          215 RYLKLNIPSLKS--LPSSFLSSISNLYTLDMPFSY-IHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISA  290 (492)
Q Consensus       215 ~~L~l~~~~i~~--lp~~~~~~l~~L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~  290 (492)
                      ++|++++|.+..  .|..+ +++++|++|++++|. ++.+| ..+..+++|++|++++|.+.+..|..++.+++|+.+++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            999999999984  45666 999999999999996 67776 46899999999999999998888888877776666665


Q ss_pred             CC--CCccchhhhCCCcccceEEeeeccC-------------------------c-------------------------
Q 045751          291 LH--PRCCTPDILGRLPNLRKLRIHGDLS-------------------------N-------------------------  318 (492)
Q Consensus       291 ~~--~~~~~~~~l~~l~~L~~L~l~~~~~-------------------------~-------------------------  318 (492)
                      +.  ....+...+..+++|+.|++++|.-                         .                         
T Consensus       180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~  259 (549)
T 2z81_A          180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD  259 (549)
T ss_dssp             ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred             ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence            42  1111111112233333333333310                         0                         


Q ss_pred             -------------------------------------------------------------chhhHHHHh-hcCCCCCeE
Q 045751          319 -------------------------------------------------------------NQSLLSKSL-YKLSSLESL  336 (492)
Q Consensus       319 -------------------------------------------------------------~~~~~~~~l-~~l~~L~~L  336 (492)
                                                                                   ....+|..+ ..+++|+.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L  339 (549)
T 2z81_A          260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL  339 (549)
T ss_dssp             SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred             cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence                                                                         011123333 356677777


Q ss_pred             EeecCC-------------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEE
Q 045751          337 KLVNES-------------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKL  390 (492)
Q Consensus       337 ~l~~~~-------------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l  390 (492)
                      +++++.             .+++|+.|++             .+..+ ++|++|++++|.+. ..|..++.+++|+.|++
T Consensus       340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred             EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence            776522             3456677766             14566 77788888887765 45556666777777777


Q ss_pred             eccccCCCcc----------------cccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751          391 KKNSYLGRKL----------------TCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS  454 (492)
Q Consensus       391 ~~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~  454 (492)
                      ++|.+.....                ......+++|+.|++++| .++.+|. ...+++|+.|++++|...+..|..+..
T Consensus       418 s~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          418 SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             TTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             CCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence            7766542110                001136788888888888 6777775 567899999999999877666667899


Q ss_pred             CCCCcEEEecCCC
Q 045751          455 VKRFKKLELWRPQ  467 (492)
Q Consensus       455 l~~L~~L~l~~c~  467 (492)
                      +++|+.|++++|+
T Consensus       496 l~~L~~L~l~~N~  508 (549)
T 2z81_A          496 LTSLQKIWLHTNP  508 (549)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CcccCEEEecCCC
Confidence            9999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.4e-27  Score=243.69  Aligned_cols=310  Identities=16%  Similarity=0.120  Sum_probs=217.1

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccC
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLR  215 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~  215 (492)
                      +.+++++.+..+.+...++..+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.+|..  .+++|+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            3789999999888888776666  899999999999886    35577899999999999999999988876  799999


Q ss_pred             EEEccCCCCcc--CchhHHhcCCCccEEecCCCcccchHHHhhccccc--cccccccccc--CCCCCccccC--------
Q 045751          216 YLKLNIPSLKS--LPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL--RHLNFGLFTL--PAYPRNDCGS--------  281 (492)
Q Consensus       216 ~L~l~~~~i~~--lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~L~~~~~--~~~~p~~~~~--------  281 (492)
                      +|++++|.+..  +|..+ +++++|++|++++|.+..  ..+..+++|  +.|++++|.+  .+..|..+..        
T Consensus        94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l  170 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI  170 (520)
T ss_dssp             EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred             EEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence            99999999985  56777 999999999999998765  346777777  8888888877  5555555444        


Q ss_pred             ------------------CcccceeecCCC--------------------------------------------------
Q 045751          282 ------------------LENLNFISALHP--------------------------------------------------  293 (492)
Q Consensus       282 ------------------l~~L~~l~~~~~--------------------------------------------------  293 (492)
                                        +++|+.+++++.                                                  
T Consensus       171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                              223333322210                                                  


Q ss_pred             ----------Cccchhhh-----CCCcccceEEeeeccCcchhhHH-HH---h----------------------hcCCC
Q 045751          294 ----------RCCTPDIL-----GRLPNLRKLRIHGDLSNNQSLLS-KS---L----------------------YKLSS  332 (492)
Q Consensus       294 ----------~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~-~~---l----------------------~~l~~  332 (492)
                                +..+.. +     +.+++|+.+++++|.  .  .+| ..   +                      ..+++
T Consensus       251 ~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~--~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~  325 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDV--F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP  325 (520)
T ss_dssp             EEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECC--C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             EEEeecccccCccccc-hhhcccccCceeEeccccccc--e--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence                      111222 2     344444444444431  1  111 11   1                      34556


Q ss_pred             CCeEEeecCC----------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCcc-cccCCCccCeE
Q 045751          333 LESLKLVNES----------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPMP-TLEKLPLLQVL  388 (492)
Q Consensus       333 L~~L~l~~~~----------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L  388 (492)
                      |+.|+++++.          .+++|+.|++             .+..+ ++|++|++++|.+.+..+. .+..+++|+.|
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            6666665521          3445555555             24556 6777777777776553443 35667777777


Q ss_pred             EEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh-ccCCCCCcEEEecCCC
Q 045751          389 KLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ-LWSVKRFKKLELWRPQ  467 (492)
Q Consensus       389 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~  467 (492)
                      ++++|.+++.. +..+  .++|+.|++++| .++.+|..+..+++|+.|++++|... .+|.. +..+++|++|++++++
T Consensus       405 ~Ls~N~l~~~~-~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          405 NMSSNILTDTI-FRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ECCSSCCCGGG-GGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCCCCcch-hhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            77777765433 1111  168999999988 77788887889999999999999755 68876 8899999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=3.3e-27  Score=230.89  Aligned_cols=299  Identities=16%  Similarity=0.156  Sum_probs=234.5

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY  216 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~  216 (492)
                      ..+++++.+..+.+..++ ... +++|++|++++|.+..    ...  +.++++|++|++++|.++.++ .+..+++|++
T Consensus        43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~----~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD----ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             cccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc----chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            457889999866666654 222 8999999999998762    222  889999999999999988876 5889999999


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CC
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PR  294 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~  294 (492)
                      |++++|.+..++. + ..+++|++|++++| .+..++. +..+++|++|++++|.+....+  +..+++|+.+++++ ..
T Consensus       115 L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh-h-ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            9999999998887 5 89999999999999 4455544 8899999999999998754433  77799999999985 33


Q ss_pred             ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751          295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED  374 (492)
Q Consensus       295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~  374 (492)
                      ...+. +..+++|+.|++++|.  .....+  +..+++|+.|+++++    .+..+. .+..+ ++|++|++++|.+...
T Consensus       190 ~~~~~-~~~l~~L~~L~l~~n~--l~~~~~--~~~~~~L~~L~l~~n----~l~~~~-~~~~l-~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          190 EDISP-LASLTSLHYFTAYVNQ--ITDITP--VANMTRLNSLKIGNN----KITDLS-PLANL-SQLTWLEIGTNQISDI  258 (347)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSC--CCCCGG--GGGCTTCCEEECCSS----CCCCCG-GGTTC-TTCCEEECCSSCCCCC
T ss_pred             ccccc-ccCCCccceeecccCC--CCCCch--hhcCCcCCEEEccCC----ccCCCc-chhcC-CCCCEEECCCCccCCC
Confidence            34455 7888999999999983  322222  788899999999852    233222 36677 8999999999998653


Q ss_pred             CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751          375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS  454 (492)
Q Consensus       375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~  454 (492)
                        ..+..+++|+.|++++|.+.+.   ..+..+++|+.|++++|......+..++.+++|+.|++++|+.....|  +..
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             --hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence              5688999999999999988764   236788999999999994333445567889999999999998665444  788


Q ss_pred             CCCCcEEEecCCC
Q 045751          455 VKRFKKLELWRPQ  467 (492)
Q Consensus       455 l~~L~~L~l~~c~  467 (492)
                      +++|++|++++|+
T Consensus       332 l~~L~~L~l~~N~  344 (347)
T 4fmz_A          332 LSKMDSADFANQV  344 (347)
T ss_dssp             CTTCSEESSSCC-
T ss_pred             hhccceeehhhhc
Confidence            9999999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2e-27  Score=255.57  Aligned_cols=311  Identities=14%  Similarity=0.159  Sum_probs=248.7

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCC-CCCCCchhHHHHhc-------cCCcEEEEEecCCcCCCCch
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSE-SHHLDPLDCEKICK-------MFKFLRVLDLGSLVLSQLPS  206 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~-~~~~~~~~~~~~~~-------~~~~L~~L~L~~~~l~~l~~  206 (492)
                      ...+++.|.+..+......+..+  +++|++|++++|. +.   ....+..+.       .+++|++|++++|.++.+|.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            35689999999776555555666  9999999999997 54   112444444       45599999999999999998


Q ss_pred             --hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccc-cccccccccccCCCCCccccCCc
Q 045751          207 --GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNK-LRHLNFGLFTLPAYPRNDCGSLE  283 (492)
Q Consensus       207 --~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~-L~~L~L~~~~~~~~~p~~~~~l~  283 (492)
                        .++.+++|++|++++|.+..+| .+ +++++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..+.
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence              9999999999999999999999 66 9999999999999999999998999999 999999999987 8888887754


Q ss_pred             --ccceeecCCC--Cccchh---hhC--CCcccceEEeeeccCcchhhHHHHh-hcCCCCCeEEeecCCCCCCccEEEee
Q 045751          284 --NLNFISALHP--RCCTPD---ILG--RLPNLRKLRIHGDLSNNQSLLSKSL-YKLSSLESLKLVNESKMPRLSKIVLD  353 (492)
Q Consensus       284 --~L~~l~~~~~--~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~L~~L~l~  353 (492)
                        +|+.|++++.  ...++.   .+.  .+++|+.|++++|  ... .+|..+ ..+++|+.|++++    ..+..++-.
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N--~L~-~lp~~~~~~l~~L~~L~Ls~----N~L~~ip~~  715 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN--EIQ-KFPTELFATGSPISTIILSN----NLMTSIPEN  715 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS--CCC-SCCHHHHHTTCCCSEEECCS----CCCSCCCTT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC--cCC-ccCHHHHccCCCCCEEECCC----CcCCccChH
Confidence              4999999842  112222   022  3458999999998  333 566554 5889999999985    234433221


Q ss_pred             c--------CCCCCCceEEEEecccCCCCCccccc--CCCccCeEEEeccccCCCcccccCCCCccccEEeecc------
Q 045751          354 E--------YQFPPSLTHLSFSNTELMEDPMPTLE--KLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------  417 (492)
Q Consensus       354 ~--------~~lp~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------  417 (492)
                      +        .++ ++|++|+|++|.+. ..+..+.  .+++|+.|+|++|.+.+  ++..+..+++|+.|+|++      
T Consensus       716 ~~~~~~~~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          716 SLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             SSSCTTSCCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             Hhcccccccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCccc
Confidence            1        223 48999999999986 6677776  99999999999999987  466678999999999987      


Q ss_pred             cCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          418 MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       418 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      |.....+|..++.+++|+.|++++|.. +.+|..+.  ++|+.|+|++|+
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence            433457788899999999999999987 78998765  699999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.4e-26  Score=235.60  Aligned_cols=302  Identities=17%  Similarity=0.173  Sum_probs=183.6

Q ss_pred             CCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEE
Q 045751          139 KMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYL  217 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L  217 (492)
                      .+++++.+..+.+..++ ... +++|++|++++|.+..    ..+  +.++++|++|++++|.++.++. ++.+++|++|
T Consensus        46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            56888888766665554 222 8889999998888762    222  7888899999999888887776 8888899999


Q ss_pred             EccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCcc
Q 045751          218 KLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCC  296 (492)
Q Consensus       218 ~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~  296 (492)
                      ++++|.+..++. + .++++|++|++++|.+..++. +..+++|++|++++ .+.+ .+ .+.++++|+.+++++ ....
T Consensus       118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCC
Confidence            998888888776 5 888889999888887777664 55565555555542 2211 11 144455555555542 1112


Q ss_pred             chhhhCCCcccceEEeeeccCcchhhHH--------------------HHhhcCCCCCeEEeecCC--------CCCCcc
Q 045751          297 TPDILGRLPNLRKLRIHGDLSNNQSLLS--------------------KSLYKLSSLESLKLVNES--------KMPRLS  348 (492)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~--------~~~~L~  348 (492)
                      ++. +..+++|+.|++++|.  .....+                    ..+..+++|+.|+++++.        .+++|+
T Consensus       192 ~~~-l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  268 (466)
T 1o6v_A          192 ISV-LAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT  268 (466)
T ss_dssp             CGG-GGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             Chh-hccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCC
Confidence            222 4444444444444441  111111                    234455555555555421        344555


Q ss_pred             EEEe---------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751          349 KIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML  419 (492)
Q Consensus       349 ~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  419 (492)
                      .|++         .+..+ ++|++|++++|.+.+..+  ++.+++|+.|++++|.+.+...   +..+++|+.|++++| 
T Consensus       269 ~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-  341 (466)
T 1o6v_A          269 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-  341 (466)
T ss_dssp             EEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-
T ss_pred             EEECCCCccCccccccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-
Confidence            5554         23344 556666666665543222  5566666666666666654331   456667777777766 


Q ss_pred             CcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          420 WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       420 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .++.++ .+..+++|+.|++++|......|  +..+++|+.|++++|+
T Consensus       342 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          342 KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            445442 46667777777777776554433  6677777777777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=5.1e-27  Score=238.26  Aligned_cols=312  Identities=14%  Similarity=0.100  Sum_probs=247.2

Q ss_pred             EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CC-chhhccccccCEEEccC
Q 045751          144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QL-PSGIENLFFLRYLKLNI  221 (492)
Q Consensus       144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l-~~~~~~l~~L~~L~l~~  221 (492)
                      +.........++.  +.++|++|++++|.+.    ...+..|.++++|++|++++|.+. .+ +..+..+++|++|++++
T Consensus        15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           15 AICINRGLHQVPE--LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EECCSSCCSSCCC--CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cCcCCCCcccCCC--CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3333334444442  4689999999999886    355678999999999999999986 55 56789999999999999


Q ss_pred             CCCccC-chhHHhcCCCccEEecCCCcccc-hHHH--hhcccccccccccccccCCCCCcc-ccCCcccceeecCCC--C
Q 045751          222 PSLKSL-PSSFLSSISNLYTLDMPFSYIHH-TADV--FWEMNKLRHLNFGLFTLPAYPRND-CGSLENLNFISALHP--R  294 (492)
Q Consensus       222 ~~i~~l-p~~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~l~~~~~--~  294 (492)
                      |.+..+ |..+ +++++|++|++++|.+.. +|..  +..+++|++|++++|.+.+..|.. +..+++|+.+++++.  .
T Consensus        89 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999966 5555 999999999999998875 4554  889999999999999998887876 788999999999852  2


Q ss_pred             ccchhhhCCC--cccceEEeeeccCcchh--------hHHHHhhcCCCCCeEEeecCC-------------CCCCccEEE
Q 045751          295 CCTPDILGRL--PNLRKLRIHGDLSNNQS--------LLSKSLYKLSSLESLKLVNES-------------KMPRLSKIV  351 (492)
Q Consensus       295 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~  351 (492)
                      ...+..+..+  .+|+.|++++|.  ...        .....+..+++|+.|+++++.             ..++++.|.
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccChhhhhccccccccccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            2222225444  688899999884  211        112234466899999999742             237788887


Q ss_pred             eec---------------------C--CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCc
Q 045751          352 LDE---------------------Y--QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP  408 (492)
Q Consensus       352 l~~---------------------~--~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  408 (492)
                      +.-                     .  .. ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..++
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~  323 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLT  323 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCT
T ss_pred             eccccccccccchhhhccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcc
Confidence            610                     0  12 58999999999998888888999999999999999987543 55678899


Q ss_pred             cccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          409 KLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       409 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +|+.|++++| .++.+ +..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus       324 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             TCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            9999999998 66766 4568899999999999998766668889999999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=244.81  Aligned_cols=312  Identities=17%  Similarity=0.135  Sum_probs=211.7

Q ss_pred             eEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEcc
Q 045751          142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLN  220 (492)
Q Consensus       142 r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~  220 (492)
                      +++.+..+.+..++ ..+.++|+.|++++|.+.    ...+..|.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus         3 ~~l~ls~n~l~~ip-~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIHVP-KDLSQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSSCC-CSCCTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccccc-ccccccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            56777766666655 333699999999999986    35667899999999999999999965 7889999999999999


Q ss_pred             CCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccCCccc--ceeecCCC---
Q 045751          221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL--NFISALHP---  293 (492)
Q Consensus       221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L--~~l~~~~~---  293 (492)
                      +|.++.+|..   .+++|++|++++|.+..  +|..++++++|++|++++|.+.+   ..+..+++|  +.+++++.   
T Consensus        78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            9999999875   79999999999998875  56889999999999999998865   345556666  88877631   


Q ss_pred             --Cccchh-------------------------hhCCCcccceEEeeecc----C-cchhhHHHHhhcCC----------
Q 045751          294 --RCCTPD-------------------------ILGRLPNLRKLRIHGDL----S-NNQSLLSKSLYKLS----------  331 (492)
Q Consensus       294 --~~~~~~-------------------------~l~~l~~L~~L~l~~~~----~-~~~~~~~~~l~~l~----------  331 (492)
                        ...+..                         .+..+++|+.|++++|.    . ...+.++ .++.++          
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence              111111                         12235566666666551    0 0111111 333333          


Q ss_pred             -----------------CCCeEEeec----CC---C--------C--------------------------CCccEEEe-
Q 045751          332 -----------------SLESLKLVN----ES---K--------M--------------------------PRLSKIVL-  352 (492)
Q Consensus       332 -----------------~L~~L~l~~----~~---~--------~--------------------------~~L~~L~l-  352 (492)
                                       +|+.|++++    +.   .        +                          .+++.|.+ 
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence                             444454443    11   0        1                          12344433 


Q ss_pred             -------e-cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC-cccccCCCCccccEEeecccCCcce
Q 045751          353 -------D-EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR-KLTCGSHGFPKLKVLHLKSMLWLEE  423 (492)
Q Consensus       353 -------~-~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~  423 (492)
                             . ...+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+. .++..++.+++|+.|++++| .+..
T Consensus       311 ~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~  388 (520)
T 2z7x_B          311 GTRMVHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSY  388 (520)
T ss_dssp             SSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBC
T ss_pred             CCccccccchhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCc
Confidence                   0 1566 7889999999988877788888889999999988887752 12344677888888888887 4443


Q ss_pred             -EEEc-cCccccccEEEEeecCCcC---------------------ccchhccCCCCCcEEEecCCC
Q 045751          424 -WTMG-TGAMPKLECLIIDPCAYLK---------------------RLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       424 -l~~~-~~~l~~L~~L~l~~c~~l~---------------------~lp~~l~~l~~L~~L~l~~c~  467 (492)
                       +|.. +..+++|+.|++++|....                     .+|..+..+++|++|++++|.
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence             5543 4445555555555554333                     455555556666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=2.2e-27  Score=249.82  Aligned_cols=317  Identities=15%  Similarity=0.108  Sum_probs=224.9

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~  213 (492)
                      ...+++++.+..+.+..+.+..+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.++ ..++.+++
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            44567777777666666665555  777777777777765    244566777777777777777776554 55777777


Q ss_pred             cCEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchH-HHhhccc-------------------------------
Q 045751          214 LRYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMN-------------------------------  259 (492)
Q Consensus       214 L~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~-------------------------------  259 (492)
                      |++|++++|.+.  .+|..+ +++++|++|++++|.+..++ ..++.++                               
T Consensus       130 L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~  208 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE  208 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             CCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence            777777777776  456666 77777777777777554432 1122221                               


Q ss_pred             --------------------------------------------------------------------------------
Q 045751          260 --------------------------------------------------------------------------------  259 (492)
Q Consensus       260 --------------------------------------------------------------------------------  259 (492)
                                                                                                      
T Consensus       209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~  288 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS  288 (606)
T ss_dssp             EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred             eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence                                                                                            


Q ss_pred             -------------------ccccccccccccCCCCCc--------------------cccCCcccceeecCCCC--c---
Q 045751          260 -------------------KLRHLNFGLFTLPAYPRN--------------------DCGSLENLNFISALHPR--C---  295 (492)
Q Consensus       260 -------------------~L~~L~L~~~~~~~~~p~--------------------~~~~l~~L~~l~~~~~~--~---  295 (492)
                                         +|+.|++++|.+ +.+|.                    .++.+++|+.+++++..  .   
T Consensus       289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  367 (606)
T 3vq2_A          289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC  367 (606)
T ss_dssp             EEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred             EEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence                               223333333332 22221                    12234556666665311  1   


Q ss_pred             cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC-----------CCCCccEEEe-----------e
Q 045751          296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-----------KMPRLSKIVL-----------D  353 (492)
Q Consensus       296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l-----------~  353 (492)
                      .+.. +..+++|+.|++++|   ....+|..+..+++|+.|+++++.           .+++|+.|++           .
T Consensus       368 ~~~~-~~~~~~L~~L~L~~n---~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          368 CSYS-DLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             CCHH-HHCCSCCCEEECCSC---SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             hhhh-hccCCcccEeECCCC---ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence            1344 888999999999998   334456778889999999998721           5678888888           4


Q ss_pred             cCCCCCCceEEEEecccCCCC-CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce-EEEccCcc
Q 045751          354 EYQFPPSLTHLSFSNTELMED-PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE-WTMGTGAM  431 (492)
Q Consensus       354 ~~~lp~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l  431 (492)
                      +..+ ++|++|++++|.+.+. .+..++++++|+.|++++|.+++.. +..+..+++|+.|++++| .++. .|..++.+
T Consensus       444 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l  520 (606)
T 3vq2_A          444 FLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQL  520 (606)
T ss_dssp             TTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCSCEEGGGTTTC
T ss_pred             hcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCC-cCCCcCHHHccCC
Confidence            6678 8999999999998763 6778899999999999999887643 556789999999999999 5554 47779999


Q ss_pred             ccccEEEEeecCCcCccchhccCCC-CCcEEEecCCC
Q 045751          432 PKLECLIIDPCAYLKRLPKQLWSVK-RFKKLELWRPQ  467 (492)
Q Consensus       432 ~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~  467 (492)
                      ++|+.|++++|... .+|..+..++ +|++|+++++|
T Consensus       521 ~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             CcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            99999999999854 7898888887 69999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=3.3e-27  Score=246.06  Aligned_cols=312  Identities=17%  Similarity=0.129  Sum_probs=214.3

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFL  214 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L  214 (492)
                      .+..++++.+..+.+..+++..+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.+|..  .+++|
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            34678899998788888776677  889999999998876    35567788899999999999998888876  78899


Q ss_pred             CEEEccCCCCccCc--hhHHhcCCCccEEecCCCcccchHHHhhccccc--cccccccccc--CCCCCccccCC------
Q 045751          215 RYLKLNIPSLKSLP--SSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL--RHLNFGLFTL--PAYPRNDCGSL------  282 (492)
Q Consensus       215 ~~L~l~~~~i~~lp--~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~L~~~~~--~~~~p~~~~~l------  282 (492)
                      ++|++++|.+..+|  ..+ +++++|++|++++|.+...  .+..+++|  +.|++++|.+  .+..|..+..+      
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~  200 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH  200 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred             CEEECCCCCccccCchHhh-cccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence            99999999988655  555 8999999999999877652  35555555  8888888776  55555444332      


Q ss_pred             --------------------cccceeecCCCCc-------cchhhhC---------------------------CCcccc
Q 045751          283 --------------------ENLNFISALHPRC-------CTPDILG---------------------------RLPNLR  308 (492)
Q Consensus       283 --------------------~~L~~l~~~~~~~-------~~~~~l~---------------------------~l~~L~  308 (492)
                                          ++|+.+++++...       .+.. +.                           ..++|+
T Consensus       201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence                                2333333221100       0000 00                           011333


Q ss_pred             eEEeeeccCcchhhHH-------------------------------HHh----------------------hcCCCCCe
Q 045751          309 KLRIHGDLSNNQSLLS-------------------------------KSL----------------------YKLSSLES  335 (492)
Q Consensus       309 ~L~l~~~~~~~~~~~~-------------------------------~~l----------------------~~l~~L~~  335 (492)
                      +|++++|.  ..+.+|                               ..+                      ..+++|+.
T Consensus       280 ~L~l~~n~--l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~  357 (562)
T 3a79_B          280 YLNIYNLT--ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEEE--ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred             EEEEeccE--eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence            33333331  111111                               011                      34556666


Q ss_pred             EEeecCC----------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCc-ccccCCCccCeEEEe
Q 045751          336 LKLVNES----------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPM-PTLEKLPLLQVLKLK  391 (492)
Q Consensus       336 L~l~~~~----------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~l~  391 (492)
                      |+++++.          .+++|+.|++             .+..+ ++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            6665421          3445555555             25567 788888888888876344 357788888888888


Q ss_pred             ccccCCCcccccCCCC-ccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh-ccCCCCCcEEEecCCC
Q 045751          392 KNSYLGRKLTCGSHGF-PKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ-LWSVKRFKKLELWRPQ  467 (492)
Q Consensus       392 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~  467 (492)
                      +|.+++..    ...+ ++|+.|++++| .++.+|..+..+++|+.|++++|... .+|.. +..+++|+.|++++++
T Consensus       437 ~n~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          437 SNMLTGSV----FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             SSCCCGGG----GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCCCcch----hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence            88876533    2233 69999999998 78889988889999999999999855 78876 8999999999999976

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=6.6e-27  Score=228.76  Aligned_cols=279  Identities=16%  Similarity=0.189  Sum_probs=233.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|++|++.++....    .  ..+..+++|++|++++|.++.++. +..+++|++|++++|.+..+| .+ .++++|+
T Consensus        43 l~~L~~L~l~~~~i~~----~--~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~  113 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS----I--QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLR  113 (347)
T ss_dssp             HTTCSEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCS
T ss_pred             cccccEEEEeCCcccc----c--hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCC
Confidence            8999999999998862    2  248889999999999999998887 899999999999999999886 45 8999999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      +|++++|.+..++. +..+++|++|++++|.....++ .+..+++|+.+++++ ....... +..+++|+.|++++|.  
T Consensus       114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--  188 (347)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--
T ss_pred             EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--
Confidence            99999999988887 8999999999999997655544 488899999999985 3334444 8899999999999983  


Q ss_pred             chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751          319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR  398 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  398 (492)
                      . ..++. +..+++|+.|+++++    .+..+. .+..+ ++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       189 l-~~~~~-~~~l~~L~~L~l~~n----~l~~~~-~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          189 I-EDISP-LASLTSLHYFTAYVN----QITDIT-PVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             C-CCCGG-GGGCTTCCEEECCSS----CCCCCG-GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             c-ccccc-ccCCCccceeecccC----CCCCCc-hhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            2 22332 788999999999852    222221 25677 899999999999865443  88999999999999988763


Q ss_pred             cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          399 KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                         ..+..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus       259 ---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          259 ---NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ---GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             ---hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence               34678999999999998 677664 47899999999999998877778889999999999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.2e-26  Score=236.10  Aligned_cols=282  Identities=19%  Similarity=0.183  Sum_probs=201.7

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ++++++|.+.++....    .  ..+..+++|++|++++|.++.++. ++.+++|++|++++|.+..+++ + +++++|+
T Consensus        45 l~~l~~L~l~~~~i~~----l--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~  115 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT  115 (466)
T ss_dssp             HHTCCEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred             hccccEEecCCCCCcc----C--cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCC
Confidence            6899999999988762    2  237889999999999999998887 9999999999999999998887 5 9999999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN  319 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  319 (492)
                      +|++++|.+..++. +.++++|++|++++|.+.+ ++ .++.+++|+.+++.+....... ++.+++|+.|++++|.  .
T Consensus       116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~--l  189 (466)
T 1o6v_A          116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK--V  189 (466)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC--C
T ss_pred             EEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc--C
Confidence            99999999988876 9999999999999998864 33 4888999999999764455566 8999999999999984  2


Q ss_pred             hhhHHHHhhcCCCCCeEEeecCC--------CCCCccEEEe---------ecCCCCCCceEEEEecccCCCCCcccccCC
Q 045751          320 QSLLSKSLYKLSSLESLKLVNES--------KMPRLSKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKL  382 (492)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l  382 (492)
                       ..+ ..+..+++|+.|+++++.        .+++|+.|++         .+..+ ++|++|++++|.+.+..+  +..+
T Consensus       190 -~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l  264 (466)
T 1o6v_A          190 -SDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP--LSGL  264 (466)
T ss_dssp             -CCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTC
T ss_pred             -CCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchh--hhcC
Confidence             222 247889999999998732        4567777776         34455 666777776666544332  5555


Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecccC---------------------CcceEEEccCccccccEEEEee
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML---------------------WLEEWTMGTGAMPKLECLIIDP  441 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~l~~l~~~~~~l~~L~~L~l~~  441 (492)
                      ++|+.|++++|.+.+...   +..+++|+.|++++|.                     .+..++. +..+++|+.|++++
T Consensus       265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN  340 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred             CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence            666666666555544221   3344444444444441                     2332222 44555555555555


Q ss_pred             cCCcCccchhccCCCCCcEEEecCCC
Q 045751          442 CAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       442 c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      |... .+ ..+.++++|+.|++++|+
T Consensus       341 n~l~-~~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          341 NKVS-DV-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             SCCC-CC-GGGTTCTTCCEEECCSSC
T ss_pred             CccC-Cc-hhhccCCCCCEEeCCCCc
Confidence            5433 22 245566666666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=250.53  Aligned_cols=317  Identities=22%  Similarity=0.221  Sum_probs=207.3

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~~  213 (492)
                      .+..+++|.+..+.+..+.+..+  +++|++|++++|...   ..+.+..|.++++|++|+|++|.++. .|..|+.+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            56789999999888888877777  999999999998543   23456789999999999999999984 4788999999


Q ss_pred             cCEEEccCCCCcc-Cchh-HHhcCCCccEEecCCCcccchH--HHhhcccccccccccccccCCCCCccccCC--cccce
Q 045751          214 LRYLKLNIPSLKS-LPSS-FLSSISNLYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYPRNDCGSL--ENLNF  287 (492)
Q Consensus       214 L~~L~l~~~~i~~-lp~~-~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~~  287 (492)
                      |++|++++|.+.. +|.. .|+++++|++|++++|.+..++  ..++++++|++|++++|.+.+..|..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            9999999999984 5554 2389999999999999886653  568999999999999999988888887776  77888


Q ss_pred             eecCC---CCccchhhhCCCcc------cceEEeeeccCcchhhHHHHhh------------------------------
Q 045751          288 ISALH---PRCCTPDILGRLPN------LRKLRIHGDLSNNQSLLSKSLY------------------------------  328 (492)
Q Consensus       288 l~~~~---~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~l~------------------------------  328 (492)
                      ++++.   ....+.. ++.+.+      |+.|++++|.  .....+..+.                              
T Consensus       179 L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          179 FSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             CEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             EECCCCccccccccc-hhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            88764   1222222 444443      8888888772  2222222221                              


Q ss_pred             ------c--CCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCCcccc
Q 045751          329 ------K--LSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDPMPTL  379 (492)
Q Consensus       329 ------~--l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~l  379 (492)
                            .  .++|+.|+++++.          .+++|+.|++           .+..+ ++|++|++++|.+.+..+..+
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSC
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHh
Confidence                  1  1455666655421          2344444444           23344 555555555555544445555


Q ss_pred             cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccch---------
Q 045751          380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPK---------  450 (492)
Q Consensus       380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~---------  450 (492)
                      .++++|+.|++++|.+.... +..+..+++|+.|++++| .++.++    .+++|+.|++++|... .+|.         
T Consensus       335 ~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~  407 (844)
T 3j0a_A          335 YGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGNKLV-TLPKINLTANLIH  407 (844)
T ss_dssp             SSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESCCCC-CCCCCCTTCCEEE
T ss_pred             cCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCCCcc-cccccccccceee
Confidence            55555555555555543322 223445555555555555 333222    2444555555444322 2221         


Q ss_pred             -------------hccCCCCCcEEEecCCC
Q 045751          451 -------------QLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       451 -------------~l~~l~~L~~L~l~~c~  467 (492)
                                   .+.++++|+.|++++|.
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCc
Confidence                         23467788888887765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=8.8e-27  Score=248.56  Aligned_cols=321  Identities=18%  Similarity=0.122  Sum_probs=181.0

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccccc
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFL  214 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L  214 (492)
                      +.+++++.+..+.+..++...+  +++|++|++++|.+.    ...+..|.++++|++|++++|.++.+|. .|+.+++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            4567777777666666665555  777777777777664    2444566677777777777777776664 46677777


Q ss_pred             CEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCcccc--CCcccceeecC
Q 045751          215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCG--SLENLNFISAL  291 (492)
Q Consensus       215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~--~l~~L~~l~~~  291 (492)
                      ++|++++|.+..+++..|+++++|++|++++|.+... |..++++++|++|++++|.+.+..+..+.  .+++|+.++++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            7777777777766544336667777777766655443 23355566666666666555443333222  23444444443


Q ss_pred             CC--C---------------------------------------------------ccchhhhCCCcc--cceEEeeecc
Q 045751          292 HP--R---------------------------------------------------CCTPDILGRLPN--LRKLRIHGDL  316 (492)
Q Consensus       292 ~~--~---------------------------------------------------~~~~~~l~~l~~--L~~L~l~~~~  316 (492)
                      +.  .                                                   ...+..+..++.  |+.|++++| 
T Consensus       180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-  258 (680)
T 1ziw_A          180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-  258 (680)
T ss_dssp             TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-
T ss_pred             CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-
Confidence            20  0                                                   011111333332  666666666 


Q ss_pred             CcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe--------------------ecCCCCCCceEEEE
Q 045751          317 SNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL--------------------DEYQFPPSLTHLSF  366 (492)
Q Consensus       317 ~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l--------------------~~~~lp~~L~~L~L  366 (492)
                       ......+..++.+++|+.|+++++.          .+++|+.|++                    .+..+ ++|++|++
T Consensus       259 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l  336 (680)
T 1ziw_A          259 -NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNM  336 (680)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEEC
T ss_pred             -CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEEC
Confidence             3333344556677777777776522          4556666655                    23456 77888888


Q ss_pred             ecccCCCCCcccccCCCccCeEEEeccccCCCccccc-CC--CCccccEEeecccCCcceE-EEccCccccccEEEEeec
Q 045751          367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCG-SH--GFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPC  442 (492)
Q Consensus       367 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~--~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c  442 (492)
                      ++|.+.+..+..+.++++|+.|++++|.+....++.. +.  ..++|+.|++++| .+..+ +..+..+++|+.|++++|
T Consensus       337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCC
Confidence            8888877777777788888888887765432221110 00  1134555555554 23322 233445555555555555


Q ss_pred             CCcCccc-hhccCCCCCcEEEecCC
Q 045751          443 AYLKRLP-KQLWSVKRFKKLELWRP  466 (492)
Q Consensus       443 ~~l~~lp-~~l~~l~~L~~L~l~~c  466 (492)
                      .....+| ..+..+++|++|++++|
T Consensus       416 ~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          416 EIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             CCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             cCccccCcccccCcccccEEecCCC
Confidence            5443333 34444555555555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.6e-26  Score=246.54  Aligned_cols=316  Identities=18%  Similarity=0.138  Sum_probs=244.0

Q ss_pred             EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCC
Q 045751          144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIP  222 (492)
Q Consensus       144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~  222 (492)
                      +.........++ ..+.+++++|++++|.+.    ...+..|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus         9 ~~cs~~~L~~ip-~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            9 ADCSHLKLTQVP-DDLPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             EECCSSCCSSCC-SCSCTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             eECCCCCccccc-cccCCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            444434455554 333689999999999886    35566799999999999999999855 678899999999999999


Q ss_pred             CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchh
Q 045751          223 SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPD  299 (492)
Q Consensus       223 ~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~  299 (492)
                      .+..+|...|+++++|++|++++|.+..+| ..++++++|++|++++|.+.+..|..++++++|+.+++++  .....+.
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            999999865599999999999999998887 4689999999999999999888888899999999999985  2233333


Q ss_pred             hhC--CCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC-------------CCCCccEEEe-----------e
Q 045751          300 ILG--RLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-------------KMPRLSKIVL-----------D  353 (492)
Q Consensus       300 ~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~l-----------~  353 (492)
                      .++  .+++|+.|++++|  ...+..+..+..+++|+.|++.+..             ..++|+.|++           +
T Consensus       164 ~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHGGGTTCEESEEECTTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HhhccccccccEEECCCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            243  5689999999998  4555556667777777777776421             2356677766           3


Q ss_pred             cCCCC-CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc-----eEEE-
Q 045751          354 EYQFP-PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-----EWTM-  426 (492)
Q Consensus       354 ~~~lp-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~-  426 (492)
                      +..++ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+.++++|+.|++++|..-.     .+|. 
T Consensus       242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCccEEeccchhhhccccccccccc
Confidence            33441 24999999999887777778889999999999988876543 5557788899999998753211     2332 


Q ss_pred             ---ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          427 ---GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       427 ---~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                         .+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence               56788899999999888776666678888888888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=2.4e-26  Score=239.04  Aligned_cols=308  Identities=19%  Similarity=0.160  Sum_probs=231.0

Q ss_pred             CCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccC
Q 045751          149 NLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSL  227 (492)
Q Consensus       149 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l  227 (492)
                      +....++ ..+.++|++|++++|.+.    ...+..|.++++|++|++++|.++.++ ..++.+++|++|++++|.+..+
T Consensus        15 ~~l~~ip-~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           15 RSFTSIP-SGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             SCCSSCC-SCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             Ccccccc-ccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            3444444 233689999999999876    345567899999999999999999554 7899999999999999999988


Q ss_pred             chhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCC-ccccCCcccceeecCC--CCccchhhhC
Q 045751          228 PSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLNFISALH--PRCCTPDILG  302 (492)
Q Consensus       228 p~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~l~~~~--~~~~~~~~l~  302 (492)
                      ++..|+++++|++|++++|.+..  .|..++++++|++|++++|...+.+| ..+..+++|+.+++++  .....+..++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            88755999999999999998874  45679999999999999998656665 5788899999999974  2222333389


Q ss_pred             CCcccceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCC-------------CCCCccEEEe---------------e
Q 045751          303 RLPNLRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNES-------------KMPRLSKIVL---------------D  353 (492)
Q Consensus       303 ~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~-------------~~~~L~~L~l---------------~  353 (492)
                      .+++|+.|+++.|.   ...++.. +..+++|+.|+++++.             .+++|+.|.+               .
T Consensus       170 ~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  246 (549)
T 2z81_A          170 SIRDIHHLTLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL  246 (549)
T ss_dssp             TCSEEEEEEEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred             ccccCceEecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence            99999999999983   3444544 4568999999998622             2344555544               0


Q ss_pred             cCCC----------------------------------------------------------CCCceEEEEecccCCCCC
Q 045751          354 EYQF----------------------------------------------------------PPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       354 ~~~l----------------------------------------------------------p~~L~~L~L~~~~l~~~~  375 (492)
                      +..+                                                          .++|++|++++|.+. ..
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i  325 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV  325 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence            0111                                                          034555666666553 33


Q ss_pred             cccc-cCCCccCeEEEeccccCCCcc--cccCCCCccccEEeecccCCcceEE---EccCccccccEEEEeecCCcCccc
Q 045751          376 MPTL-EKLPLLQVLKLKKNSYLGRKL--TCGSHGFPKLKVLHLKSMLWLEEWT---MGTGAMPKLECLIIDPCAYLKRLP  449 (492)
Q Consensus       376 ~~~l-~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp  449 (492)
                      |..+ .++++|+.|++++|.+.+..+  ...++.+++|+.|++++| .++.++   ..+..+++|+.|++++|... .+|
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  403 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP  403 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred             CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence            3333 468889999999888775432  223577889999999988 666554   23778899999999988644 788


Q ss_pred             hhccCCCCCcEEEecCCC
Q 045751          450 KQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       450 ~~l~~l~~L~~L~l~~c~  467 (492)
                      ..+..+++|++|++++|.
T Consensus       404 ~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SCCCCCTTCCEEECTTSC
T ss_pred             hhhcccccccEEECCCCC
Confidence            888888889999988876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=241.97  Aligned_cols=137  Identities=17%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             CCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCch
Q 045751          151 SELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPS  229 (492)
Q Consensus       151 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~  229 (492)
                      ...++ ..+.+++++|++++|.+.    ...+..|.++++|++|++++|.++.++ ..|+.+++|++|++++|.+..+++
T Consensus        19 l~~ip-~~l~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           19 FYKIP-DNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             CSSCC-SSSCSSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             ccccC-CCccccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            34444 233678999999999886    355568899999999999999999664 678999999999999999998876


Q ss_pred             hHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCC-CCCccccCCcccceeecCC
Q 045751          230 SFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPA-YPRNDCGSLENLNFISALH  292 (492)
Q Consensus       230 ~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~l~~~~  292 (492)
                      ..|+++++|++|++++|.+..+|. .++++++|++|++++|.+.+ .+|..++++++|+.+++++
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred             hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence            555999999999999999988875 48999999999999999876 5799999999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.8e-27  Score=238.81  Aligned_cols=297  Identities=19%  Similarity=0.127  Sum_probs=246.4

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~  213 (492)
                      .+..++.|.+..+.+..+....+  +++|++|++++|.+.    ...+..|.++++|++|+|++|.++.+|. .+..+++
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            45689999999888888877777  999999999999876    3556789999999999999999998875 5789999


Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH  292 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~  292 (492)
                      |++|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+++.+
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            999999999999776555599999999999999887764 4689999999999999998766666788899999999974


Q ss_pred             --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecc
Q 045751          293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNT  369 (492)
Q Consensus       293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~  369 (492)
                        ........+..+++|+.|++++|  .....++.......+|+.|++++    .+++.+.. .+..+ ++|++|++++|
T Consensus       186 n~i~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n  258 (477)
T 2id5_A          186 LNINAIRDYSFKRLYRLKVLEISHW--PYLDTMTPNCLYGLNLTSLSITH----CNLTAVPYLAVRHL-VYLRFLNLSYN  258 (477)
T ss_dssp             CCCCEECTTCSCSCTTCCEEEEECC--TTCCEECTTTTTTCCCSEEEEES----SCCCSCCHHHHTTC-TTCCEEECCSS
T ss_pred             CcCcEeChhhcccCcccceeeCCCC--ccccccCcccccCccccEEECcC----CcccccCHHHhcCc-cccCeeECCCC
Confidence              23333434889999999999998  45666666666667999999984    34444332 46778 89999999999


Q ss_pred             cCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcC
Q 045751          370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLK  446 (492)
Q Consensus       370 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~  446 (492)
                      .+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.++. .+..+++|+.|++++|+...
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cCCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccC
Confidence            998777778899999999999999887643 556788999999999998 7777765 46889999999999998654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=2.3e-26  Score=239.72  Aligned_cols=315  Identities=16%  Similarity=0.102  Sum_probs=217.4

Q ss_pred             eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEc
Q 045751          141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKL  219 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l  219 (492)
                      .+++.+..+....++ ..+.+++++|++++|.+.    ...+..|.++++|++|++++|.++.+ |..|+.+++|++|++
T Consensus        33 ~~~l~ls~~~L~~ip-~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           33 ESMVDYSNRNLTHVP-KDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CCEEECTTSCCCSCC-TTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEcCCCCCccCC-CCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            478888867777665 334699999999999986    35567899999999999999999965 678999999999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchH--HHhhcccccccccccccccCCCCCccccCCcccceeecCCC----
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP----  293 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~----  293 (492)
                      ++|.++.+|..   .+++|++|++++|.+..+|  ..++++++|++|++++|.+.+.....+.++ +|+.+++++.    
T Consensus       108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~  183 (562)
T 3a79_B          108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHI  183 (562)
T ss_dssp             TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCC
T ss_pred             CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccc
Confidence            99999999975   7999999999999988764  689999999999999998876333333333 3388877631    


Q ss_pred             -Cccchh-------------------------hhCCCcccceEEeeeccC--cchhhHHHHhhcC---------------
Q 045751          294 -RCCTPD-------------------------ILGRLPNLRKLRIHGDLS--NNQSLLSKSLYKL---------------  330 (492)
Q Consensus       294 -~~~~~~-------------------------~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l---------------  330 (492)
                       ...+..                         .+..+++|+.|++++|..  .........+..+               
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence             111111                         133566788888887620  0111112223333               


Q ss_pred             ------------CCCCeEEeecC----C---CC-----CC-----------------------------ccEEEe-----
Q 045751          331 ------------SSLESLKLVNE----S---KM-----PR-----------------------------LSKIVL-----  352 (492)
Q Consensus       331 ------------~~L~~L~l~~~----~---~~-----~~-----------------------------L~~L~l-----  352 (492)
                                  ++|++|+++++    .   ..     .+                             ++.|++     
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence                        35666666541    1   11     23                             333333     


Q ss_pred             ---ec-CCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCc-ccccCCCCccccEEeecccCCcce-EEE
Q 045751          353 ---DE-YQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRK-LTCGSHGFPKLKVLHLKSMLWLEE-WTM  426 (492)
Q Consensus       353 ---~~-~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~-l~~  426 (492)
                         .+ ..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. .+..+..+++|+.|++++| .++. +|.
T Consensus       344 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  421 (562)
T 3a79_B          344 IHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD  421 (562)
T ss_dssp             CCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred             ccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence               01 566 88999999999988877888889999999999988877532 2445678888888888887 4443 543


Q ss_pred             c-cCccc----------------------cccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          427 G-TGAMP----------------------KLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       427 ~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      . +..++                      +|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence            2 33444                      55555555553 23555555566667777766664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=8.6e-26  Score=224.49  Aligned_cols=284  Identities=15%  Similarity=0.132  Sum_probs=238.7

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .++++.|++.++...    ..+...+.++++|++|++++|.++.++ ..++.+++|++|++++|.+..+++..|+++++|
T Consensus        44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            799999999999876    466677899999999999999999665 588999999999999999998877755999999


Q ss_pred             cEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS  317 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  317 (492)
                      ++|++++|.+..+|.. +.++++|++|++++|.+.+..|..+..+++|+.|++++..-.... ++.+++|+.|++++|. 
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~-  197 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL-  197 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc-
Confidence            9999999999999877 589999999999999998777888889999999999853222223 6778999999999883 


Q ss_pred             cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751          318 NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG  397 (492)
Q Consensus       318 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  397 (492)
                       ..     .+...++|+.|++++    ..+..+.  ...+ ++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+
T Consensus       198 -l~-----~~~~~~~L~~L~l~~----n~l~~~~--~~~~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          198 -LS-----TLAIPIAVEELDASH----NSINVVR--GPVN-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             -CS-----EEECCSSCSEEECCS----SCCCEEE--CCCC-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             -cc-----ccCCCCcceEEECCC----Ceeeecc--cccc-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence             21     123456889999874    4455442  2334 8999999999998654  578999999999999998876


Q ss_pred             CcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          398 RKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       398 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .. +..+..+++|+.|++++| .++.++.....+++|+.|++++|.. ..+|..+..+++|++|++++|+
T Consensus       263 ~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          263 IM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             EE-SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred             cC-hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc
Confidence            43 556788999999999998 7888988888999999999999974 4788888899999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.9e-26  Score=223.26  Aligned_cols=233  Identities=22%  Similarity=0.221  Sum_probs=195.9

Q ss_pred             cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      ..+++++|++++|.++.+|..++.+++|++|++++|.+..+|..+ +++++|++|++++|.+..+|..++++++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            458899999999999999999999999999999999999999988 9999999999999999999999999999999999


Q ss_pred             cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      ++|...+.+|..++...            .... ++.+++|+.|++++|.  .. .+|..+                   
T Consensus       158 ~~n~~~~~~p~~~~~~~------------~~~~-~~~l~~L~~L~L~~n~--l~-~lp~~l-------------------  202 (328)
T 4fcg_A          158 RACPELTELPEPLASTD------------ASGE-HQGLVNLQSLRLEWTG--IR-SLPASI-------------------  202 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-------------CCC-EEESTTCCEEEEEEEC--CC-CCCGGG-------------------
T ss_pred             CCCCCccccChhHhhcc------------chhh-hccCCCCCEEECcCCC--cC-cchHhh-------------------
Confidence            99988888887654311            1112 6678889999999882  22 344333                   


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM  426 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  426 (492)
                              +.+ ++|++|++++|.+.+ .+..++++++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|.
T Consensus       203 --------~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          203 --------ANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             --------GGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             --------cCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence                    344 777888888888754 5557889999999999988887654 66678899999999999988888888


Q ss_pred             ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCC
Q 045751          427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  466 (492)
                      .++.+++|+.|++++|+.++.+|..+.++++|+.+++...
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            8999999999999999999999999999999999988754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.1e-25  Score=238.05  Aligned_cols=323  Identities=16%  Similarity=0.101  Sum_probs=229.4

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~  213 (492)
                      .+..+++|.+..+.+..+++..|  +++|++|++++|.+.    .+.+.+|.++++|++|+|++|.++.+| ..|.++++
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            56789999999888988887787  999999999999876    356678999999999999999999877 56899999


Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccCC---------
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSL---------  282 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l---------  282 (492)
                      |++|++++|.++.+|+..|+++++|++|++++|.+..  +|..++.+++|++|++++|.+.+..|..+..+         
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            9999999999999988766999999999999997764  56778999999999999987755322221110         


Q ss_pred             -------------------------------------------cc-----------------------------------
Q 045751          283 -------------------------------------------EN-----------------------------------  284 (492)
Q Consensus       283 -------------------------------------------~~-----------------------------------  284 (492)
                                                                 ..                                   
T Consensus       206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  285 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  285 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred             hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence                                                       00                                   


Q ss_pred             --------------------------------------------cceeecCCC----------------------Cccch
Q 045751          285 --------------------------------------------LNFISALHP----------------------RCCTP  298 (492)
Q Consensus       285 --------------------------------------------L~~l~~~~~----------------------~~~~~  298 (492)
                                                                  ++.+++.+.                      .....
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred             hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence                                                        000100000                      00000


Q ss_pred             hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEE------------------
Q 045751          299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIV------------------  351 (492)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~------------------  351 (492)
                      . ...+++|+.|+++.|........+.....+.+|+.+++....         .+++|+.+.                  
T Consensus       366 ~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l  444 (635)
T 4g8a_A          366 S-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  444 (635)
T ss_dssp             C-CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred             c-cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence            0 123445556666555322222333444455556665554311         233333333                  


Q ss_pred             -------e-----------ecCCCCCCceEEEEecccCC-CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccE
Q 045751          352 -------L-----------DEYQFPPSLTHLSFSNTELM-EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKV  412 (492)
Q Consensus       352 -------l-----------~~~~lp~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  412 (492)
                             +           .+..+ +.|+.|++++|.+. ...+..+..+++|+.|++++|.+++.. +..+.++++|+.
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~-~~~f~~l~~L~~  522 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQV  522 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred             cccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC-hHHHcCCCCCCE
Confidence                   3           23345 67888888877632 335567788999999999999887543 556788999999


Q ss_pred             EeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCC-CCCcEEEecCCC
Q 045751          413 LHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSV-KRFKKLELWRPQ  467 (492)
Q Consensus       413 L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~  467 (492)
                      |+|++| .++.++. .+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus       523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            999998 6776654 57889999999999998877777788887 689999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=244.13  Aligned_cols=188  Identities=19%  Similarity=0.147  Sum_probs=146.5

Q ss_pred             EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcC-CCC-chhhccccccCEEEccC
Q 045751          144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL-SQL-PSGIENLFFLRYLKLNI  221 (492)
Q Consensus       144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l-~~l-~~~~~~l~~L~~L~l~~  221 (492)
                      +.........++.  ..+++++|++++|.+.    ...+..|.++++|++|+|++|.. ..+ |..|+++++|++|++++
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEccCCCCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            3344345556653  6789999999999886    35567889999999999999964 455 68899999999999999


Q ss_pred             CCCccC-chhHHhcCCCccEEecCCCcccc-hHHH--hhcccccccccccccccCCCCC-ccccCCcccceeecCCC--C
Q 045751          222 PSLKSL-PSSFLSSISNLYTLDMPFSYIHH-TADV--FWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLNFISALHP--R  294 (492)
Q Consensus       222 ~~i~~l-p~~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~l~~~~~--~  294 (492)
                      |.+..+ |..+ +++++|++|++++|.+.. +|..  ++++++|++|++++|.+.+..| ..++++++|+.|++++.  .
T Consensus        83 N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            999966 5555 999999999999998865 4554  8899999999999999877655 57899999999999852  2


Q ss_pred             ccchhhhCCC--cccceEEeeeccCcchhhHHHHhhcCCC------CCeEEeec
Q 045751          295 CCTPDILGRL--PNLRKLRIHGDLSNNQSLLSKSLYKLSS------LESLKLVN  340 (492)
Q Consensus       295 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~------L~~L~l~~  340 (492)
                      ...+..++.+  ++|+.|+++.|  ......+..++.+++      |+.|++++
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             eeCHHHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCC
Confidence            2222226555  78999999998  444445544555444      99999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=4.2e-25  Score=223.38  Aligned_cols=293  Identities=20%  Similarity=0.126  Sum_probs=213.7

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY  216 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~  216 (492)
                      ..+++++.+..+.+...+ ... +++|++|++++|.+..    .   .+..+++|++|++++|.++.++  ++.+++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            467888888877666654 222 8889999998888762    2   2788888999999988888765  788888999


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-Cc
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RC  295 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~  295 (492)
                      |++++|.++.+|  + +.+++|++|++++|.++.++  ++.+++|++|++++|...+.+  .++.+++|+.+++++. ..
T Consensus       111 L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          111 LNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence            999888888876  5 88888999999888887774  788888889988888655555  4667888888888742 11


Q ss_pred             cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCC
Q 045751          296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                      .+ . ++.+++|+.|++++|.  ... +  .++.+++|+.|++++    .+++.+  .+..+ ++|++|++++|.+.+..
T Consensus       184 ~l-~-l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~----N~l~~i--p~~~l-~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          184 EL-D-VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSS----NKLTEI--DVTPL-TQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CC-C-CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCS----SCCSCC--CCTTC-TTCSEEECCSSCCSCCC
T ss_pred             ee-c-cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcC----Cccccc--Ccccc-CCCCEEEeeCCcCCCcC
Confidence            22 2 6778888888888883  222 2  377788888888874    344443  36677 89999999999987654


Q ss_pred             cccccCCC-------ccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc--------cCccccccEEEEe
Q 045751          376 MPTLEKLP-------LLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG--------TGAMPKLECLIID  440 (492)
Q Consensus       376 ~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--------~~~l~~L~~L~l~  440 (492)
                      +..+.++.       +|+.|++++|...+..   ..+.+++|+.|++++|..+..+|..        +..+++|+.|+++
T Consensus       250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~---~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~  326 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF---QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN  326 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE---ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             HHHCCCCCEEeccCCCCCEEECCCCccCCcc---cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence            43333332       3444444444443322   2467899999999999877776642        4567888999998


Q ss_pred             ecCCcCccchhccCCCCCcEEEecCCC
Q 045751          441 PCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       441 ~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +|.... ++  +.++++|+.|+++++.
T Consensus       327 ~N~l~~-l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          327 NTELTE-LD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             CCcccc-cc--cccCCcCcEEECCCCC
Confidence            887554 53  8889999999998876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.5e-25  Score=232.18  Aligned_cols=271  Identities=15%  Similarity=0.144  Sum_probs=226.3

Q ss_pred             cCCcEEEEEecCCcCCCCchh-hccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHL  264 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L  264 (492)
                      .++++++|+++++.++.+|.. +..+++|++|++++|.+..+++..|+.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            467899999999999988855 68899999999999999988775559999999999999999888654 7999999999


Q ss_pred             cccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC
Q 045751          265 NFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES  342 (492)
Q Consensus       265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  342 (492)
                      ++++|.+.+..+..++.+++|+.|++++  ....++..++.+++|+.|++++|.  ... +  .+..+++|+.|+++++.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSSC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccCc
Confidence            9999998754444468899999999985  334445448999999999999983  222 2  36678999999998743


Q ss_pred             -----CCCCccEEEe-------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751          343 -----KMPRLSKIVL-------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL  410 (492)
Q Consensus       343 -----~~~~L~~L~l-------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  410 (492)
                           .+++|+.|++       ..+..|++|+.|++++|.+.+  +..++.+++|+.|++++|.+.+.. +..++.+++|
T Consensus       204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L  280 (597)
T 3oja_B          204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRL  280 (597)
T ss_dssp             CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSC
T ss_pred             cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHHhcCccCC
Confidence                 5667888887       112233789999999999865  467899999999999999987653 5667899999


Q ss_pred             cEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          411 KVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       411 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +.|++++| .++.+|.....+++|+.|++++|... .+|..+..+++|+.|++++|.
T Consensus       281 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          281 ERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred             CEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence            99999998 78889988889999999999999865 788888999999999999987

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=5.2e-26  Score=218.89  Aligned_cols=248  Identities=17%  Similarity=0.182  Sum_probs=154.5

Q ss_pred             CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecC-CcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCC
Q 045751          161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGS-LVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISN  237 (492)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~  237 (492)
                      .+++.|+++++.+..  ....+..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..+ .++++
T Consensus        50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred             ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence            567777777776641  002345667777777777774 6655 66777777777777777777777 666666 77777


Q ss_pred             ccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCc-ccceEEeeec
Q 045751          238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLP-NLRKLRIHGD  315 (492)
Q Consensus       238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~  315 (492)
                      |++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..                      +..++ +|+.|++++|
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----------------------l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----------------------YGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG----------------------GGCCCTTCCEEECCSS
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH----------------------HhhhhhcCcEEECcCC
Confidence            777777777665 56666777777777777777765555544                      44444 5666666665


Q ss_pred             cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEecccc
Q 045751          316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSY  395 (492)
Q Consensus       316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  395 (492)
                        ...+..|..+..+                            . |++|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus       185 --~l~~~~~~~~~~l----------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          185 --RLTGKIPPTFANL----------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             --EEEEECCGGGGGC----------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             --eeeccCChHHhCC----------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence              2333333333332                            2 55555555555555556666666666666666666


Q ss_pred             CCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          396 LGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       396 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .+..  ..+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|.. ..+++|+.+++.+++
T Consensus       234 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          234 AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCBG--GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             eeec--CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            5432  12455666777777666322255556666677777777766665556654 566666666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=4.7e-25  Score=214.02  Aligned_cols=284  Identities=18%  Similarity=0.137  Sum_probs=169.4

Q ss_pred             CeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEE
Q 045751          140 MIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLK  218 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~  218 (492)
                      +.+.+.+.......++ ..+.+.++.|++++|.+.    ......|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccccC-ccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            3455555433333333 223566777777777665    23344566777777777777776644 56667777777777


Q ss_pred             ccCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCC--CCCccccCCcccceeecCCCCc
Q 045751          219 LNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPA--YPRNDCGSLENLNFISALHPRC  295 (492)
Q Consensus       219 l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~l~~~~~~~  295 (492)
                      +++|.+..+|..+ .  ++|++|++++|.+..++. .+.++++|+.|++++|.+..  ..+..                 
T Consensus       107 Ls~n~l~~l~~~~-~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------  166 (330)
T 1xku_A          107 LSKNQLKELPEKM-P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----------------  166 (330)
T ss_dssp             CCSSCCSBCCSSC-C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----------------
T ss_pred             CCCCcCCccChhh-c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-----------------
Confidence            7777777776655 2  567777777776655543 36667777777777666532  22333                 


Q ss_pred             cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCC
Q 045751          296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMED  374 (492)
Q Consensus       296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~  374 (492)
                           +..+++|+.|++++|.   ...+|..+.  ++|+.|++++    ..++.+.. .+..+ ++|++|++++|.+.+.
T Consensus       167 -----~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          167 -----FQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDG----NKITKVDAASLKGL-NNLAKLGLSFNSISAV  231 (330)
T ss_dssp             -----GGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTT----SCCCEECTGGGTTC-TTCCEEECCSSCCCEE
T ss_pred             -----ccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCcee
Confidence                 4455555555555552   112222221  4555555552    22333221 45566 7777777777777665


Q ss_pred             CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cC------ccccccEEEEeecCCcC-
Q 045751          375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TG------AMPKLECLIIDPCAYLK-  446 (492)
Q Consensus       375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~-  446 (492)
                      .+..+..+++|+.|++++|.+..  ++..+..+++|++|++++| .++.++.. +.      ..+.|+.|++.+|+... 
T Consensus       232 ~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          232 DNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc
Confidence            55667777788888887777662  3445667777888888777 55555432 21      24677888888887643 


Q ss_pred             -ccchhccCCCCCcEEEecCC
Q 045751          447 -RLPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       447 -~lp~~l~~l~~L~~L~l~~c  466 (492)
                       ..|..+..+++|+.++++++
T Consensus       309 ~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          309 EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GSCGGGGTTCCCGGGEEC---
T ss_pred             ccCccccccccceeEEEeccc
Confidence             34567777888888888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=3.5e-25  Score=215.10  Aligned_cols=265  Identities=17%  Similarity=0.173  Sum_probs=156.3

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .+++++|++++|.+.    ...+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..+ .  ++|
T Consensus        53 ~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~--~~L  125 (332)
T 2ft3_A           53 SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-P--SSL  125 (332)
T ss_dssp             CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-C--TTC
T ss_pred             CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-c--ccC
Confidence            445555555555543    12333455555555555555555533 444555555555555555555555544 2  455


Q ss_pred             cEEecCCCcccchHHH-hhcccccccccccccccCC--CCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPA--YPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      ++|++++|.+..+|.. +..+++|++|++++|.+..  ..|..                      +..+ +|+.|++++|
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA----------------------FDGL-KLNYLRISEA  182 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS----------------------SCSC-CCSCCBCCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc----------------------ccCC-ccCEEECcCC
Confidence            5555555555544432 4555555555555554421  22222                      4444 5666666665


Q ss_pred             cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751          316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS  394 (492)
Q Consensus       316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~  394 (492)
                      .   ...+|..+.  ++|+.|+++++    .++.+.. .+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       183 ~---l~~l~~~~~--~~L~~L~l~~n----~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          183 K---LTGIPKDLP--ETLNELHLDHN----KIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             B---CSSCCSSSC--SSCSCCBCCSS----CCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             C---CCccCcccc--CCCCEEECCCC----cCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence            2   222332222  45666666531    2222211 45566 788888898888877777778889999999999888


Q ss_pred             cCCCcccccCCCCccccEEeecccCCcceEEEc-cC------ccccccEEEEeecCCc--CccchhccCCCCCcEEEecC
Q 045751          395 YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TG------AMPKLECLIIDPCAYL--KRLPKQLWSVKRFKKLELWR  465 (492)
Q Consensus       395 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~  465 (492)
                      +.  .++..+..+++|+.|++++| .++.++.. +.      ..++|+.|++.+|+..  ...|..+..+++|+.+++++
T Consensus       253 l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          253 LS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             CC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred             Ce--ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence            76  34555778889999999987 56665432 22      2577899999999866  34566788899999999988


Q ss_pred             CC
Q 045751          466 PQ  467 (492)
Q Consensus       466 c~  467 (492)
                      +.
T Consensus       330 n~  331 (332)
T 2ft3_A          330 YK  331 (332)
T ss_dssp             --
T ss_pred             cc
Confidence            75

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=3.1e-24  Score=208.22  Aligned_cols=264  Identities=16%  Similarity=0.174  Sum_probs=168.4

Q ss_pred             EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751          191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~  269 (492)
                      +++++++++.++.+|..+.  ++|++|++++|.++.++...|+++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus        33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            3444444444444443322  3444444444444444432224444444444444444333 333444444444444444


Q ss_pred             ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      .+. .+|..+.  ++|+.+++++  .....+..+..+++|+.|++++|........+..+..+++|+.|++++    ..+
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~----n~l  183 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNI  183 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS----SCC
T ss_pred             cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC----Ccc
Confidence            432 2333322  3444444442  222333347889999999999984222335567788999999999985    233


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG  427 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  427 (492)
                      ..+.  .... ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+|..
T Consensus       184 ~~l~--~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~  258 (330)
T 1xku_A          184 TTIP--QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVKVPGG  258 (330)
T ss_dssp             CSCC--SSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred             ccCC--cccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCC-cCccCChh
Confidence            3221  1223 79999999999998877888999999999999999887543 335678999999999998 78889988


Q ss_pred             cCccccccEEEEeecCCcCccchhcc------CCCCCcEEEecCCCH
Q 045751          428 TGAMPKLECLIIDPCAYLKRLPKQLW------SVKRFKKLELWRPQP  468 (492)
Q Consensus       428 ~~~l~~L~~L~l~~c~~l~~lp~~l~------~l~~L~~L~l~~c~~  468 (492)
                      +..+++|+.|++++|+....-+..+.      ..++|+.|+++++|-
T Consensus       259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            99999999999999986543333332      347899999999983

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=3.6e-24  Score=216.57  Aligned_cols=270  Identities=19%  Similarity=0.098  Sum_probs=219.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|++|+++++.+..    . + .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  + +++++|+
T Consensus        41 l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred             cCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence            8999999999998862    2 2 6889999999999999999886  889999999999999999886  5 8999999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCcc-chhhhCCCcccceEEeeeccCc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCC-TPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      +|++++|.+..+|  ++.+++|++|++++|.+.+ ++  ++.+++|+.+++++.... ... ++.+++|+.|++++|.  
T Consensus       110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~--  181 (457)
T 3bz5_A          110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK--  181 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC--
T ss_pred             EEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc--
Confidence            9999999998886  8999999999999999876 33  778999999999853111 114 7889999999999983  


Q ss_pred             chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751          319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR  398 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  398 (492)
                       ...++  +..+++|+.|++++    .+++.+  .++.+ ++|++|++++|.+.+ .+  ++.+++|+.|++++|.+.+.
T Consensus       182 -l~~l~--l~~l~~L~~L~l~~----N~l~~~--~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          182 -ITELD--VSQNKLLNRLNCDT----NNITKL--DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             -CCCCC--CTTCTTCCEEECCS----SCCSCC--CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             -cceec--cccCCCCCEEECcC----CcCCee--ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence             22344  78899999999984    344444  47788 999999999999976 33  88999999999999998875


Q ss_pred             cccccCCCCccc----------cEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh--------ccCCCCCcE
Q 045751          399 KLTCGSHGFPKL----------KVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ--------LWSVKRFKK  460 (492)
Q Consensus       399 ~~~~~~~~~~~L----------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~  460 (492)
                      .    .+.+++|          +.|++++|..+..+|  .+.+++|+.|++++|+.++.+|..        +.++++|++
T Consensus       249 ~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~  322 (457)
T 3bz5_A          249 D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY  322 (457)
T ss_dssp             C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             C----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence            3    3445544          556666666566666  578899999999999988777642        455677888


Q ss_pred             EEecCCC
Q 045751          461 LELWRPQ  467 (492)
Q Consensus       461 L~l~~c~  467 (492)
                      |+++++.
T Consensus       323 L~L~~N~  329 (457)
T 3bz5_A          323 LYLNNTE  329 (457)
T ss_dssp             EECTTCC
T ss_pred             EECCCCc
Confidence            8877765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.6e-25  Score=215.46  Aligned_cols=139  Identities=16%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             CCeeEEEEecCCCCc--cccccc--CCCeeEEEeec-CCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccc
Q 045751          139 KMIKRLTANVNLSEL--DSLEDF--NLYLHSLLCLS-SESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLF  212 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~--~~~~~~--~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~  212 (492)
                      .+++++.+..+.+..  ..+..+  +++|++|++++ +...    ...+..+.++++|++|++++|.++ .+|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            689999999777765  444555  99999999995 6654    245667899999999999999998 8899999999


Q ss_pred             ccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhccc-ccccccccccccCCCCCccccCC
Q 045751          213 FLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMN-KLRHLNFGLFTLPAYPRNDCGSL  282 (492)
Q Consensus       213 ~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l  282 (492)
                      +|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..++.++ +|++|++++|.+.+.+|..+..+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            9999999999999 788888 99999999999999887 8898999998 99999999999876666655443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=4.3e-24  Score=207.45  Aligned_cols=262  Identities=18%  Similarity=0.224  Sum_probs=166.5

Q ss_pred             EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751          191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~  269 (492)
                      +++++++++.++.+|..+.  ++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4444444444444443332  3444444444444444332224444444444444444433 333444444444444444


Q ss_pred             ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      .+. .+|..+.  ++|+.+++++  ....++..++.+++|+.|++++|........+..+..+ +|+.|++++    ..+
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~----n~l  184 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE----AKL  184 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS----SBC
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC----CCC
Confidence            442 3333332  3444444442  12233333788889999999988422223455666666 899999984    223


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG  427 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  427 (492)
                      ..++  . .++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+|..
T Consensus       185 ~~l~--~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~  259 (332)
T 2ft3_A          185 TGIP--K-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN-KLSRVPAG  259 (332)
T ss_dssp             SSCC--S-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             CccC--c-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC-cCeecChh
Confidence            3221  1 12278999999999998888888999999999999999987643 445678999999999998 78899988


Q ss_pred             cCccccccEEEEeecCCcCccchhccC------CCCCcEEEecCCC
Q 045751          428 TGAMPKLECLIIDPCAYLKRLPKQLWS------VKRFKKLELWRPQ  467 (492)
Q Consensus       428 ~~~l~~L~~L~l~~c~~l~~lp~~l~~------l~~L~~L~l~~c~  467 (492)
                      +..+++|+.|++++|.....-+..+..      .++|+.|++.++|
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            999999999999999865433333433      4789999999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=2e-23  Score=210.88  Aligned_cols=288  Identities=21%  Similarity=0.201  Sum_probs=176.9

Q ss_pred             CCCeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccC-CcEEEEEecCCcCCCCchhhccccccCE
Q 045751          138 RKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMF-KFLRVLDLGSLVLSQLPSGIENLFFLRY  216 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~~l~~~~~~l~~L~~  216 (492)
                      +.+++++.+.++....++  ...++|++|++++|....         +... ++|++|++++|.++.+| .++.+++|++
T Consensus        90 ~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~---------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~  157 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI  157 (454)
T ss_dssp             CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             cCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc---------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence            456777777766555543  125677777777776651         1111 57777777777777776 4777777777


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCc
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRC  295 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~  295 (492)
                      |++++|.++.+|...    .+|++|++++|.+..+| .++++++|++|++++|.+.+ +|...   .+|+.+++++ ...
T Consensus       158 L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          158 IDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE  228 (454)
T ss_dssp             EECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred             EECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence            777777777776432    47777777777777776 47777777777777777653 44332   4666676663 222


Q ss_pred             cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC------CCCCccEEEe------ecCCCCCCceE
Q 045751          296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES------KMPRLSKIVL------DEYQFPPSLTH  363 (492)
Q Consensus       296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~  363 (492)
                      .++. ++.+++|+.|++++|.  . ..+|.   ..++|+.|+++++.      .+++|+.|++      .+..+|++|++
T Consensus       229 ~lp~-~~~l~~L~~L~l~~N~--l-~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~  301 (454)
T 1jl5_A          229 ELPE-LQNLPFLTTIYADNNL--L-KTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY  301 (454)
T ss_dssp             SCCC-CTTCTTCCEEECCSSC--C-SSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred             cccc-cCCCCCCCEEECCCCc--C-Ccccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCE
Confidence            3344 6677777777777762  2 22222   23567777776522      3345666655      23344467777


Q ss_pred             EEEecccCCCCCcccccCC-CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeec
Q 045751          364 LSFSNTELMEDPMPTLEKL-PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC  442 (492)
Q Consensus       364 L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c  442 (492)
                      |++++|.+.+     +..+ ++|+.|++++|.+++.  +   ..+++|+.|++++| .++.+|.   .+++|+.|++++|
T Consensus       302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l--p---~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          302 LNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL--P---ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             EECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred             EECcCCcCCc-----ccCCcCcCCEEECCCCccccc--c---ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence            7777777643     2233 4788888888777652  2   23578888888887 6666665   4678888888888


Q ss_pred             CCcC--ccchhccCC-------------CCCcEEEecCCC
Q 045751          443 AYLK--RLPKQLWSV-------------KRFKKLELWRPQ  467 (492)
Q Consensus       443 ~~l~--~lp~~l~~l-------------~~L~~L~l~~c~  467 (492)
                      ....  .+|..+.++             ++|+.|++++++
T Consensus       368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            7766  677777666             778888888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.3e-24  Score=208.65  Aligned_cols=222  Identities=19%  Similarity=0.223  Sum_probs=174.7

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      .++++.|+++++.+.     ..+..+.++++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+ +++++|+
T Consensus        80 ~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCC
T ss_pred             ccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCC
Confidence            577888888888775     3345567799999999999999999999999999999999999999999988 9999999


Q ss_pred             EEecCCC-cccchHHHhhc---------ccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccce
Q 045751          240 TLDMPFS-YIHHTADVFWE---------MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK  309 (492)
Q Consensus       240 ~L~L~~~-~l~~lp~~~~~---------l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~  309 (492)
                      +|++++| .+..+|..+..         +++|++|++++|.+. .+|.                     . ++.+++|++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~---------------------~-l~~l~~L~~  210 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA---------------------S-IANLQNLKS  210 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG---------------------G-GGGCTTCCE
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH---------------------h-hcCCCCCCE
Confidence            9999997 55777766654         888888888888764 3333                     2 677788888


Q ss_pred             EEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEE
Q 045751          310 LRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLK  389 (492)
Q Consensus       310 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  389 (492)
                      |++++|.  . ..+|..+.                           .+ ++|++|++++|.+.+..+..++++++|+.|+
T Consensus       211 L~L~~N~--l-~~l~~~l~---------------------------~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          211 LKIRNSP--L-SALGPAIH---------------------------HL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             EEEESSC--C-CCCCGGGG---------------------------GC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             EEccCCC--C-CcCchhhc---------------------------cC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            8888872  2 22333333                           34 6677777777777777777888888888888


Q ss_pred             EeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeec
Q 045751          390 LKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC  442 (492)
Q Consensus       390 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c  442 (492)
                      +++|.+.+.. +..+..+++|+.|++++|..++.+|..++.+++|+.+.+..+
T Consensus       260 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          260 LKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            8888776644 555778888999999988888888888888999888887754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=6.4e-23  Score=216.69  Aligned_cols=302  Identities=18%  Similarity=0.160  Sum_probs=212.0

Q ss_pred             CCCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccc
Q 045751          136 DSRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLF  212 (492)
Q Consensus       136 ~~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~  212 (492)
                      ....++++|.+..+.+..+++.++  +++|++|++++|.+.    ..++..|.++++|++|++++|.++.+|. .|++++
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence            356789999999888888887777  899999999999886    3666789999999999999999998774 589999


Q ss_pred             ccCEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchH-HHhhcccccc---------------------------
Q 045751          213 FLRYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLR---------------------------  262 (492)
Q Consensus       213 ~L~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~---------------------------  262 (492)
                      +|++|++++|.+.  .+|..+ +.+++|++|++++|.+..++ ..+..+.+++                           
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~  227 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH  227 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             ccCeeccccCccccCCCchhh-ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence            9999999999998  456666 89999999999999775543 2232222211                           


Q ss_pred             --------------------------------------------------------------------------------
Q 045751          263 --------------------------------------------------------------------------------  262 (492)
Q Consensus       263 --------------------------------------------------------------------------------  262 (492)
                                                                                                      
T Consensus       228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  307 (635)
T 4g8a_A          228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN  307 (635)
T ss_dssp             EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred             hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence                                                                                            


Q ss_pred             ------------------------cccccccccCCCC-------------------CccccCCcccceeecCCCC-----
Q 045751          263 ------------------------HLNFGLFTLPAYP-------------------RNDCGSLENLNFISALHPR-----  294 (492)
Q Consensus       263 ------------------------~L~L~~~~~~~~~-------------------p~~~~~l~~L~~l~~~~~~-----  294 (492)
                                              .|++.+|.+....                   +.....+++|+.++++...     
T Consensus       308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~  387 (635)
T 4g8a_A          308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG  387 (635)
T ss_dssp             CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred             cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence                                    1111111110000                   0011125667777665311     


Q ss_pred             ccchhhhCCCcccceEEeeeccC---------------------cchhh-HHHHhhcCCCCCeEEeecCC----------
Q 045751          295 CCTPDILGRLPNLRKLRIHGDLS---------------------NNQSL-LSKSLYKLSSLESLKLVNES----------  342 (492)
Q Consensus       295 ~~~~~~l~~l~~L~~L~l~~~~~---------------------~~~~~-~~~~l~~l~~L~~L~l~~~~----------  342 (492)
                      ..... ...+.+|+.+++..+..                     ..... .+..+..+++++.++++.+.          
T Consensus       388 ~~~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~  466 (635)
T 4g8a_A          388 CCSQS-DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  466 (635)
T ss_dssp             ECCHH-HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccccc-hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence            11112 33444444444443310                     11111 11334566677777766522          


Q ss_pred             CCCCccEEEe------------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751          343 KMPRLSKIVL------------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL  410 (492)
Q Consensus       343 ~~~~L~~L~l------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  410 (492)
                      .++.++.|++            .+..+ ++|++|+|++|.+.+..+..++++++|+.|+|++|.+++.. +..+..+++|
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L  544 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSL  544 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTC
T ss_pred             cchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCC
Confidence            5667888877            45677 89999999999998888889999999999999999987654 5557889999


Q ss_pred             cEEeecccCCcceE-EEccCcc-ccccEEEEeecCCcC
Q 045751          411 KVLHLKSMLWLEEW-TMGTGAM-PKLECLIIDPCAYLK  446 (492)
Q Consensus       411 ~~L~l~~~~~l~~l-~~~~~~l-~~L~~L~l~~c~~l~  446 (492)
                      +.|++++| .++.+ |..+..+ ++|+.|++++|+...
T Consensus       545 ~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          545 QVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999998 56655 4557777 689999999998765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=2.3e-25  Score=226.39  Aligned_cols=326  Identities=16%  Similarity=0.090  Sum_probs=192.9

Q ss_pred             CCeeEEEEecCCCCcccccc-c--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhh-cccc-
Q 045751          139 KMIKRLTANVNLSELDSLED-F--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGI-ENLF-  212 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~-~~l~-  212 (492)
                      .+++++.+.++.+....... +  +++|++|++++|.+........+..+..+++|++|++++|.++. .+..+ ..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            35677777755555544443 3  77788888877776411111345566777778888887777652 22222 2344 


Q ss_pred             ---ccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcccch-HHHhh-----cccccccccccccccCCCC---
Q 045751          213 ---FLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYIHHT-ADVFW-----EMNKLRHLNFGLFTLPAYP---  275 (492)
Q Consensus       213 ---~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~-----~l~~L~~L~L~~~~~~~~~---  275 (492)
                         +|++|++++|.+.     .++..+ ..+++|++|++++|.+... +..+.     ..++|++|++++|.+....   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence               5777888777776     345555 7777788888777765432 12222     2446777777777665532   


Q ss_pred             -CccccCCcccceeecCCCCc---cchh---hh-CCCcccceEEeeeccC--cchhhHHHHhhcCCCCCeEEeecCC---
Q 045751          276 -RNDCGSLENLNFISALHPRC---CTPD---IL-GRLPNLRKLRIHGDLS--NNQSLLSKSLYKLSSLESLKLVNES---  342 (492)
Q Consensus       276 -p~~~~~l~~L~~l~~~~~~~---~~~~---~l-~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~---  342 (492)
                       +..+..+++|+.+++++..-   .+..   .+ ...++|++|++++|.-  .....++..+..+++|+.|+++++.   
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             44444567777777764211   0111   01 1245777777777631  1112356666677777777777522   


Q ss_pred             ------------CCCCccEEEe---------------ecCCCCCCceEEEEecccCCCCCccccc-----CCCccCeEEE
Q 045751          343 ------------KMPRLSKIVL---------------DEYQFPPSLTHLSFSNTELMEDPMPTLE-----KLPLLQVLKL  390 (492)
Q Consensus       343 ------------~~~~L~~L~l---------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~l  390 (492)
                                  .+++|+.|++               .+..+ ++|++|++++|.+.+..+..+.     ..++|+.|++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence                        2556666666               22236 6777888877776443333332     2357777777


Q ss_pred             eccccCCCc---ccccCCCCccccEEeecccCCcceE-EEccC-----ccccccEEEEeecCCcC----ccchhccCCCC
Q 045751          391 KKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEW-TMGTG-----AMPKLECLIIDPCAYLK----RLPKQLWSVKR  457 (492)
Q Consensus       391 ~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~-----~l~~L~~L~l~~c~~l~----~lp~~l~~l~~  457 (492)
                      ++|.+++..   ++..+..+++|+.|++++| .++.. +..+.     ..++|+.|++++|....    .+|..+..+++
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            777766542   2223345677888888877 44422 11111     25678888888886553    56777777788


Q ss_pred             CcEEEecCCC
Q 045751          458 FKKLELWRPQ  467 (492)
Q Consensus       458 L~~L~l~~c~  467 (492)
                      |++|++++|+
T Consensus       400 L~~L~l~~N~  409 (461)
T 1z7x_W          400 LRELDLSNNC  409 (461)
T ss_dssp             CCEEECCSSS
T ss_pred             ccEEECCCCC
Confidence            8888888776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=8.9e-23  Score=199.89  Aligned_cols=253  Identities=18%  Similarity=0.162  Sum_probs=133.3

Q ss_pred             cCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCC
Q 045751          159 FNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISN  237 (492)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~  237 (492)
                      +.++|++|++++|.+.    ......+.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|...|+++++
T Consensus        50 ~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           50 LTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             CCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred             ccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence            3567777777777665    23444667777777777777777744 355777777777777777777777664477777


Q ss_pred             ccEEecCCCcccchHH--Hhhcccccccccccccc-cCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEe
Q 045751          238 LYTLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFT-LPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRI  312 (492)
Q Consensus       238 L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~-~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l  312 (492)
                      |++|++++|.+..+|.  .+..+++|++|++++|. +....|..+..+++|+.+++++  .....+..++.+++|++|++
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            7777777777766665  46677777777777763 3323333444444444444432  11111112444444444444


Q ss_pred             eeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccc---cCCCccCeEE
Q 045751          313 HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL---EKLPLLQVLK  389 (492)
Q Consensus       313 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~  389 (492)
                      ++|  . ...++..+                          +..+ ++|++|++++|.+.+..+..+   ...+.++.++
T Consensus       206 ~~n--~-l~~~~~~~--------------------------~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          206 HMK--Q-HILLLEIF--------------------------VDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             ECS--C-STTHHHHH--------------------------HHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             CCC--c-cccchhhh--------------------------hhhc-ccccEEECCCCccccccccccccccccchhhccc
Confidence            444  1 12222211                          1112 455555555555544332222   2344455555


Q ss_pred             EeccccCCCc---ccccCCCCccccEEeecccCCcceEEEc-cCccccccEEEEeecCCcC
Q 045751          390 LKKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPKLECLIIDPCAYLK  446 (492)
Q Consensus       390 l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~  446 (492)
                      +.++.+.+..   ++..+..+++|+.|++++| .++.+|.. ++.+++|+.|++++|+...
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            5554443321   1222334455555555554 44444443 2455555555555554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=3.9e-23  Score=202.45  Aligned_cols=270  Identities=13%  Similarity=0.091  Sum_probs=185.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      |+.....+++++....    ++ ..+  .++|++|++++|.++.+|. .+..+++|++|++++|.+..++...|.++++|
T Consensus        30 C~~~~~c~~~~~~l~~----iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS----IP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             ECTTSEEECCSTTCSS----CC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCeEeeCCCCCccc----cc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            5555556666666551    22 222  2589999999999987764 78899999999999999997765544899999


Q ss_pred             cEEecCCCcccchHHH-hhcccccccccccccccCCCCCc--cccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRN--DCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      ++|++++|.++.+|.. ++++++|++|++++|.+. .+|.  .+..+++|+.+++                      ++|
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l----------------------~~n  159 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV----------------------GNM  159 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEE----------------------EES
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEEC----------------------CCC
Confidence            9999999988888766 888999999999998875 3333  3444555555544                      444


Q ss_pred             cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751          316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS  394 (492)
Q Consensus       316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~  394 (492)
                      . ......+..+..+++|+.|++++    ..+....- .+..+ ++|++|++++|.+.......+..+++|+.|++++|.
T Consensus       160 ~-~~~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          160 D-TFTKIQRKDFAGLTFLEELEIDA----SDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             S-SCCEECTTTTTTCCEEEEEEEEE----TTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             c-cccccCHHHccCCCCCCEEECCC----CCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            1 01111123344444444444442    11211110 45566 899999999999744333345578999999999998


Q ss_pred             cCCCcccc--cCCCCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCCcCccchhc-cCCCCCcEEEecCC
Q 045751          395 YLGRKLTC--GSHGFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAYLKRLPKQL-WSVKRFKKLELWRP  466 (492)
Q Consensus       395 ~~~~~~~~--~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c  466 (492)
                      +.+.....  .....+.++.+++.++ .+.     .+|..+..+++|+.|++++|... .+|..+ .++++|++|++++|
T Consensus       234 l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          234 LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            87643211  1234667888888877 333     45666789999999999999755 788774 89999999999998


Q ss_pred             C
Q 045751          467 Q  467 (492)
Q Consensus       467 ~  467 (492)
                      +
T Consensus       312 ~  312 (353)
T 2z80_A          312 P  312 (353)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=9.7e-23  Score=195.51  Aligned_cols=226  Identities=23%  Similarity=0.256  Sum_probs=99.2

Q ss_pred             CcEEEEEecCCcCCCCchh-hccccccCEEEccCCCCccC---chhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSL---PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL  264 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~l---p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L  264 (492)
                      ++|++|++++|.++.+|.. +..+++|++|++++|.+..+   |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence            3455555555555544432 34555555555555555432   3333 44555555555555554444444455555555


Q ss_pred             cccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCC
Q 045751          265 NFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKM  344 (492)
Q Consensus       265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  344 (492)
                      ++++|.+.+..+                    ... +..+++|+.|++++|  ......+..+..+++|+.|++++    
T Consensus       107 ~l~~n~l~~~~~--------------------~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~----  159 (306)
T 2z66_A          107 DFQHSNLKQMSE--------------------FSV-FLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG----  159 (306)
T ss_dssp             ECTTSEEESSTT--------------------TTT-TTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT----
T ss_pred             ECCCCccccccc--------------------chh-hhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC----
Confidence            555544422111                    012 555666666666665  23223333344444444444432    


Q ss_pred             CCccE--EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc
Q 045751          345 PRLSK--IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE  422 (492)
Q Consensus       345 ~~L~~--L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  422 (492)
                      ..+..  +.-.+..+ ++|++|++++|.+.+..+..+.++++|+.|++++|.+++.. ...+..+++|+.|++++|....
T Consensus       160 n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          160 NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred             CccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence            01110  10123334 45555555555544444444445555555555555443322 1223344445555554442211


Q ss_pred             eEEEccCccc-cccEEEEeecCC
Q 045751          423 EWTMGTGAMP-KLECLIIDPCAY  444 (492)
Q Consensus       423 ~l~~~~~~l~-~L~~L~l~~c~~  444 (492)
                      ..+..+..++ +|+.|++++|+.
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cCHHHHHhhhccCCEEEccCCCe
Confidence            2223333442 444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=6.1e-23  Score=215.27  Aligned_cols=322  Identities=11%  Similarity=0.035  Sum_probs=211.0

Q ss_pred             CCeeEEEEecCCCCccccccc---CCC-eeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhc
Q 045751          139 KMIKRLTANVNLSELDSLEDF---NLY-LHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIE  209 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~  209 (492)
                      ..++++.+..+.........+   ++. |++|++.++...  +.........++++|++|+|++|.++.     ++..+.
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            568888888554443332333   344 999999887632  123444556688999999999998652     344556


Q ss_pred             cccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccC------------
Q 045751          210 NLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLP------------  272 (492)
Q Consensus       210 ~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~------------  272 (492)
                      .+++|++|+++++.+.     .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.+...            
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            7889999999998886     334334 7899999999999988888888889999999988743221            


Q ss_pred             --------------CCCCccccCCcccceeecCCCC---ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751          273 --------------AYPRNDCGSLENLNFISALHPR---CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES  335 (492)
Q Consensus       273 --------------~~~p~~~~~l~~L~~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  335 (492)
                                    ..+|..+..+++|+.|++++..   ..+...+..+++|++|+++++  .....++.....+++|+.
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCE
Confidence                          1233334446667777766422   112222467777777777744  344445555567778888


Q ss_pred             EEeec-----------CC-----------CCCCccEEEe-----------ecC-CCCCCceEEEEec----ccCCCC---
Q 045751          336 LKLVN-----------ES-----------KMPRLSKIVL-----------DEY-QFPPSLTHLSFSN----TELMED---  374 (492)
Q Consensus       336 L~l~~-----------~~-----------~~~~L~~L~l-----------~~~-~lp~~L~~L~L~~----~~l~~~---  374 (492)
                      |+++.           +.           .+++|+.|.+           .+. .+ ++|++|++++    +.+++.   
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHH
Confidence            88872           11           4777887777           222 26 7788888863    334332   


Q ss_pred             --CcccccCCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcC-c
Q 045751          375 --PMPTLEKLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLK-R  447 (492)
Q Consensus       375 --~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~-~  447 (492)
                        .+..+.++++|+.|+++.|.  +++..+......+++|+.|++++| .++  .++..+..+++|+.|++++|+... .
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  504 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERA  504 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence              11224567888888886433  444333333345788888888887 444  334445778899999999998433 2


Q ss_pred             cchhccCCCCCcEEEecCCC
Q 045751          448 LPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       448 lp~~l~~l~~L~~L~l~~c~  467 (492)
                      ++.....+++|++|++++|.
T Consensus       505 ~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          505 IAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHhcCccCeeECcCCc
Confidence            45556678899999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=3.2e-22  Score=202.59  Aligned_cols=223  Identities=17%  Similarity=0.191  Sum_probs=110.4

Q ss_pred             cEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccc
Q 045751          190 FLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFG  267 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~  267 (492)
                      ++++|+|++|.++.+ |..|..+++|++|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            445555555554422 34445555555555555555544433334555555555555544444432 4444555555554


Q ss_pred             ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      +|.+..                      .+...+..+++|+.|++++|  .....++..                     
T Consensus       156 ~N~l~~----------------------~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~---------------------  190 (452)
T 3zyi_A          156 NNPIES----------------------IPSYAFNRVPSLMRLDLGEL--KKLEYISEG---------------------  190 (452)
T ss_dssp             SCCCCE----------------------ECTTTTTTCTTCCEEECCCC--TTCCEECTT---------------------
T ss_pred             CCCcce----------------------eCHhHHhcCCcccEEeCCCC--CCccccChh---------------------
Confidence            444321                      11112555666666666654  122222110                     


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EE
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TM  426 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~  426 (492)
                           .+..+ ++|++|++++|.+.+.  +.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+ +.
T Consensus       191 -----~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~  260 (452)
T 3zyi_A          191 -----AFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNS-QVSLIERN  260 (452)
T ss_dssp             -----TTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTS-CCCEECTT
T ss_pred             -----hccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCC-cCceECHH
Confidence                 23344 5555666666555332  23555666666666666554432 334555666666666665 44433 23


Q ss_pred             ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            35566666666666665443233344556666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=6.8e-24  Score=215.58  Aligned_cols=301  Identities=15%  Similarity=0.055  Sum_probs=219.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-CchhHHh
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-LPSSFLS  233 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~  233 (492)
                      .++|++|+++++...   .......+..+++|++|++++|.++     .++..+..+++|++|++++|.+.. .+..++.
T Consensus         2 ~~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            2 SLDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             CEEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            367999999999875   3344556889999999999999988     457778889999999999999984 3445545


Q ss_pred             cCC----CccEEecCCCccc-----chHHHhhcccccccccccccccCCCCCccccC-----CcccceeecCCCCc----
Q 045751          234 SIS----NLYTLDMPFSYIH-----HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-----LENLNFISALHPRC----  295 (492)
Q Consensus       234 ~l~----~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-----l~~L~~l~~~~~~~----  295 (492)
                      .++    +|++|++++|.+.     .+|..+..+++|++|++++|.+....+..+..     .++|+.|++++..-    
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            566    7999999999776     56888999999999999999876544433322     56799999985211    


Q ss_pred             --cchhhhCCCcccceEEeeeccCcchhhHHHHhh-----cCCCCCeEEeecCC--------------CCCCccEEEe--
Q 045751          296 --CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLY-----KLSSLESLKLVNES--------------KMPRLSKIVL--  352 (492)
Q Consensus       296 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~--------------~~~~L~~L~l--  352 (492)
                        .++..+..+++|++|++++|  ......+..+.     ..++|+.|+++++.              .+++|+.|++  
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNN--DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSS--BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHhhCCCCCEEECcCC--CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence              12333777899999999998  34443333333     36799999999732              4678888887  


Q ss_pred             --------------ecCCCCCCceEEEEecccCCCC----CcccccCCCccCeEEEeccccCCCcccc----cCCCCccc
Q 045751          353 --------------DEYQFPPSLTHLSFSNTELMED----PMPTLEKLPLLQVLKLKKNSYLGRKLTC----GSHGFPKL  410 (492)
Q Consensus       353 --------------~~~~lp~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~L  410 (492)
                                    ....+ ++|++|++++|.++..    .+..+.++++|+.|++++|.+.+.....    .....++|
T Consensus       237 n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L  315 (461)
T 1z7x_W          237 NKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  315 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             CcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence                          11246 7889999998887554    3445667889999999888775432111    11234689


Q ss_pred             cEEeecccCCcce-----EEEccCccccccEEEEeecCCcCccch----hccC-CCCCcEEEecCCC
Q 045751          411 KVLHLKSMLWLEE-----WTMGTGAMPKLECLIIDPCAYLKRLPK----QLWS-VKRFKKLELWRPQ  467 (492)
Q Consensus       411 ~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~c~  467 (492)
                      +.|++++|. ++.     ++..+..+++|+.|++++|......+.    .+.. .++|++|++++|.
T Consensus       316 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             eeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            999999884 442     344566778999999999865543233    2322 6799999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=7.1e-23  Score=196.45  Aligned_cols=241  Identities=21%  Similarity=0.190  Sum_probs=179.2

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC---chhhccccccCEEEc
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL---PSGIENLFFLRYLKL  219 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~l  219 (492)
                      .+....+....++ ..+.+++++|+++++.+.    ..+...|.++++|++|++++|.++.+   +..+..+++|++|++
T Consensus        11 ~l~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           11 EIRCNSKGLTSVP-TGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEECCSSCCSSCC-SCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             EEEcCCCCcccCC-CCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            4444434444444 334689999999999876    35556789999999999999998844   677788999999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHH--HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccc
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCT  297 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~  297 (492)
                      ++|.+..+|..+ ..+++|++|++++|.+..++.  .+..+++|++|++++|.+.+..|..+..+++|            
T Consensus        86 s~n~i~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  152 (306)
T 2z66_A           86 SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------  152 (306)
T ss_dssp             CSCSEEEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC------------
T ss_pred             CCCccccChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC------------
Confidence            999999999887 999999999999998888864  68899999999999998765555554444444            


Q ss_pred             hhhhCCCcccceEEeeeccCcchh-hHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751          298 PDILGRLPNLRKLRIHGDLSNNQS-LLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       298 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                                ++|++++|  ...+ ..|..+..+++|+.|++++    ..++.+.. .+..+ ++|++|++++|.+.+..
T Consensus       153 ----------~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          153 ----------EVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQ----CQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             ----------CEEECTTC--EEGGGEECSCCTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECTTSCCSBCC
T ss_pred             ----------CEEECCCC--ccccccchhHHhhCcCCCEEECCC----CCcCCcCHHHhcCC-CCCCEEECCCCccCccC
Confidence                      44444444  2222 2344445555555555542    22332211 45667 89999999999987777


Q ss_pred             cccccCCCccCeEEEeccccCCCcccccCCCCc-cccEEeecccC
Q 045751          376 MPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP-KLKVLHLKSML  419 (492)
Q Consensus       376 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  419 (492)
                      +..+..+++|+.|++++|.+.+.. +..+..++ +|+.|++++|+
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCC
T ss_pred             hhhccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCC
Confidence            778899999999999999987654 44566774 99999999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=6.9e-22  Score=199.65  Aligned_cols=288  Identities=20%  Similarity=0.190  Sum_probs=195.6

Q ss_pred             CCCeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEE
Q 045751          138 RKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYL  217 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L  217 (492)
                      ..+++++.+..+.+..++  ...++|++|++++|....    . + .+.++++|++|++++|.++.+|..+   .+|++|
T Consensus       110 ~~~L~~L~l~~n~l~~l~--~~~~~L~~L~L~~n~l~~----l-p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L  178 (454)
T 1jl5_A          110 PQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEK----L-P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI  178 (454)
T ss_dssp             CTTCCEEECCSSCCSCCC--SCCTTCCEEECCSSCCSS----C-C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred             cCCCcEEECCCCccCccc--CCCCCCCEEECcCCCCCC----C-c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence            468899999866555433  124799999999998862    2 2 4899999999999999998887654   489999


Q ss_pred             EccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-Ccc
Q 045751          218 KLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RCC  296 (492)
Q Consensus       218 ~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~~  296 (492)
                      ++++|.+..+| .+ +++++|++|++++|.+..+|..   .++|++|++++|.+. .+| .++.+++|+.+++++. ...
T Consensus       179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence            99999999988 46 8999999999999988877653   358999999999886 677 4888999999999752 222


Q ss_pred             chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC------CCCCccEEEe------ecCCCCCCceEE
Q 045751          297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES------KMPRLSKIVL------DEYQFPPSLTHL  364 (492)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L  364 (492)
                      ++.   .+++|+.|++++|.  . ..+|.   ..++|+.|+++++.      .+++|+.|++      .+..+|++|++|
T Consensus       252 l~~---~~~~L~~L~l~~N~--l-~~l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L  322 (454)
T 1jl5_A          252 LPD---LPPSLEALNVRDNY--L-TDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL  322 (454)
T ss_dssp             CCS---CCTTCCEEECCSSC--C-SCCCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE
T ss_pred             ccc---cccccCEEECCCCc--c-cccCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE
Confidence            222   24789999999883  2 22332   24788999998732      3467888877      344565699999


Q ss_pred             EEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc--eEEEccCcc-----------
Q 045751          365 SFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAM-----------  431 (492)
Q Consensus       365 ~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l-----------  431 (492)
                      ++++|.+.+ .+.   .+++|+.|++++|.++..  +.   .+++|++|++++|....  .+|..++.+           
T Consensus       323 ~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~~l--p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~  393 (454)
T 1jl5_A          323 NVSNNKLIE-LPA---LPPRLERLIASFNHLAEV--PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE  393 (454)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred             ECCCCcccc-ccc---cCCcCCEEECCCCccccc--cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence            999999865 333   268999999999988742  33   57899999999984433  466667766           


Q ss_pred             --ccccEEEEeecCCcC--ccchhccCCCCCcEEEecCCC
Q 045751          432 --PKLECLIIDPCAYLK--RLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       432 --~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~  467 (492)
                        ++|+.|++++|+..+  .+|.      +++.|.+.+|.
T Consensus       394 ~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~  427 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER  427 (454)
T ss_dssp             ----------------------------------------
T ss_pred             ccCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence              899999999998765  5664      45556666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=6.6e-22  Score=199.59  Aligned_cols=222  Identities=18%  Similarity=0.221  Sum_probs=100.7

Q ss_pred             cEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFG  267 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~  267 (492)
                      ++++|+|++|.++.++ ..+..+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            4444455544444322 344444445555555444444443333444445555554444444433 24444444444444


Q ss_pred             ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH-HHhhcCCCCCeEEeecCCCCCC
Q 045751          268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS-KSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      +|.+.                      ..+...+..+++|+.|++++|  .....++ ..+..+++              
T Consensus       145 ~N~i~----------------------~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~--------------  186 (440)
T 3zyj_A          145 NNPIE----------------------SIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSN--------------  186 (440)
T ss_dssp             SCCCC----------------------EECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCSS--------------
T ss_pred             CCccc----------------------ccCHHHhhhCcccCEeCCCCC--CCcceeCcchhhcccc--------------
Confidence            44432                      112222556666677776664  1222222 23444444              


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-  425 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-  425 (492)
                                    |++|++++|.+...  +.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.++ 
T Consensus       187 --------------L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~  248 (440)
T 3zyj_A          187 --------------LRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQS-QIQVIER  248 (440)
T ss_dssp             --------------CCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred             --------------cCeecCCCCcCccc--cccCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCC-ceeEECh
Confidence                          44455544444321  13445555555555555444321 333444555555555554 333332 


Q ss_pred             EccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          426 MGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       426 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      ..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            234455555555555554333222334455555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=1.3e-22  Score=192.55  Aligned_cols=247  Identities=18%  Similarity=0.168  Sum_probs=138.5

Q ss_pred             CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc-ccch-HHHhhccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY-IHHT-ADVFWEMNKLRHLN  265 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~  265 (492)
                      ++|++|++++|.++.++ ..+..+++|++|++++|.+..++...|..+++|++|++++|. +..+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            45666666666666444 345666666666666666665433222666666666666664 5555 34455666666666


Q ss_pred             ccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCC
Q 045751          266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMP  345 (492)
Q Consensus       266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  345 (492)
                      +++|.+.+..|..                      +..+++|++|++++|  ......+..+..+++|+.|++++    .
T Consensus       112 l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~----n  163 (285)
T 1ozn_A          112 LDRCGLQELGPGL----------------------FRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG----N  163 (285)
T ss_dssp             CTTSCCCCCCTTT----------------------TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS----S
T ss_pred             CCCCcCCEECHhH----------------------hhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCC----C
Confidence            6666554433333                      445555555555555  22222223345555555555552    2


Q ss_pred             CccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE
Q 045751          346 RLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW  424 (492)
Q Consensus       346 ~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  424 (492)
                      .++.+.- .+..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..+++|+.|++++|+-....
T Consensus       164 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          164 RISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCCC
Confidence            3333322 35556 77777888777776666777777888888888877776532 333567778888888877322111


Q ss_pred             EEccCccccccEEEEeecCCcCccchhccC--CCCCcEEEecCC
Q 045751          425 TMGTGAMPKLECLIIDPCAYLKRLPKQLWS--VKRFKKLELWRP  466 (492)
Q Consensus       425 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c  466 (492)
                      + .......++.+....+......|..+..  +..++..++.||
T Consensus       242 ~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          242 R-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             G-GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             C-cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            1 0111233445555555555556655533  455666666666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=2.3e-23  Score=200.81  Aligned_cols=244  Identities=14%  Similarity=0.058  Sum_probs=143.4

Q ss_pred             hhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhc
Q 045751          179 LDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE  257 (492)
Q Consensus       179 ~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~  257 (492)
                      ......+..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+++ + ..+++|++|++++|.+..+|    .
T Consensus        24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~----~   97 (317)
T 3o53_A           24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELL----V   97 (317)
T ss_dssp             HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEE----E
T ss_pred             hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCcccccc----C
Confidence            355667778889999999999988654 678899999999999999986665 5 89999999999999887766    3


Q ss_pred             ccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751          258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES  335 (492)
Q Consensus       258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~  335 (492)
                      .++|++|++++|.+.+..+..   +++|+.+++++  .....+..++.+++|+.|++++|  ......+..+.       
T Consensus        98 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~-------  165 (317)
T 3o53_A           98 GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELA-------  165 (317)
T ss_dssp             CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--CCCEEEGGGGG-------
T ss_pred             CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--CCCcccHHHHh-------
Confidence            488999999988875433322   34455555542  11122212444555555555555  22222222221       


Q ss_pred             EEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEee
Q 045751          336 LKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL  415 (492)
Q Consensus       336 L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  415 (492)
                                         ..+ ++|++|++++|.+...  .....+++|+.|++++|.+.+.  +..+..+++|+.|++
T Consensus       166 -------------------~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          166 -------------------ASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISL  221 (317)
T ss_dssp             -------------------GGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEEC
T ss_pred             -------------------hcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc--hhhhcccCcccEEEC
Confidence                               233 4455555555544322  1222355555555555554431  222445555555555


Q ss_pred             cccCCcceEEEccCccccccEEEEeecCCc-CccchhccCCCCCcEEEecC
Q 045751          416 KSMLWLEEWTMGTGAMPKLECLIIDPCAYL-KRLPKQLWSVKRFKKLELWR  465 (492)
Q Consensus       416 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~  465 (492)
                      ++| .++.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+
T Consensus       222 ~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          222 RNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             TTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            555 44455555555555555555555544 34444555555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.3e-21  Score=198.25  Aligned_cols=242  Identities=21%  Similarity=0.226  Sum_probs=174.5

Q ss_pred             eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751          141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL  219 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l  219 (492)
                      .+.+.........++ ..+.+++++|++++|.+.    ...+..|.++++|++|+|++|.++.++ ..+..+++|++|++
T Consensus        56 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP-QGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSSCC-SCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCccC-CCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            345555534444444 344789999999999886    355678899999999999999998554 78899999999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCc-cccCCcccceeecCC-CCcc
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALH-PRCC  296 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~-~~~~  296 (492)
                      ++|.+..+|...|..+++|++|++++|.+..+|. .+.++++|+.|++++|...+.++. .+..+++|+.|++++ ....
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9999999998866999999999999999988875 588999999999998765555554 456677788877764 3333


Q ss_pred             chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751          297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                      ++. +..+++|+.|++++|  ......+..+..+++|+.|++++    ..+..+.. .+..+ ++|+.|+|++|.+....
T Consensus       211 ~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          211 MPN-LTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMN----SQVSLIERNAFDGL-ASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             CCC-CTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred             ccc-ccccccccEEECcCC--cCcccCcccccCccCCCEEEeCC----CcCceECHHHhcCC-CCCCEEECCCCcCCccC
Confidence            445 677777777777777  34444456666676777776653    23333221 34555 66666666666665555


Q ss_pred             cccccCCCccCeEEEecccc
Q 045751          376 MPTLEKLPLLQVLKLKKNSY  395 (492)
Q Consensus       376 ~~~l~~l~~L~~L~l~~~~~  395 (492)
                      +..+..+++|+.|++++|.+
T Consensus       283 ~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          283 HDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTSSTTCTTCCEEECCSSCE
T ss_pred             hHHhccccCCCEEEccCCCc
Confidence            55566666666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=5.5e-21  Score=199.14  Aligned_cols=261  Identities=16%  Similarity=0.031  Sum_probs=156.5

Q ss_pred             CeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEc
Q 045751          140 MIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKL  219 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l  219 (492)
                      .++.+.+..+.+..++ ..+.++|++|++++|.+..    ++.    .+++|++|+|++|.++.+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~lp-~~l~~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCCC-SCCCTTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCccC-hhhCCCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            4678888866666554 3336899999999998762    221    57889999999999988887   6788999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccch
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTP  298 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~  298 (492)
                      ++|.+..+|.    .+++|+.|++++|.+..+|..   +++|++|++++|.+.+ +|..   +.+|+.|++++ ....++
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCCCc
Confidence            9999998885    578899999999988888763   4889999999988753 4432   34555555543 111111


Q ss_pred             hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccc
Q 045751          299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT  378 (492)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~  378 (492)
                         ..+++|+.|++++|.   ...+|.   ..++|+.|++++    ..+..    +...+++|++|++++|.+.+ .+  
T Consensus       178 ---~~~~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~----N~l~~----l~~~~~~L~~L~Ls~N~L~~-lp--  237 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQ---LASLPT---LPSELYKLWAYN----NRLTS----LPALPSGLKELIVSGNRLTS-LP--  237 (622)
T ss_dssp             ---CCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCS----SCCSS----CCCCCTTCCEEECCSSCCSC-CC--
T ss_pred             ---ccCCCCcEEECCCCC---CCCCCC---ccchhhEEECcC----Ccccc----cCCCCCCCCEEEccCCccCc-CC--
Confidence               234566666666662   111221   124455555542    11221    11111455555555555433 11  


Q ss_pred             ccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccch
Q 045751          379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPK  450 (492)
Q Consensus       379 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~  450 (492)
                       ..+++|+.|++++|.++..  +.   .+++|+.|++++| .++.+|..+..+++|+.|++++|+.....|.
T Consensus       238 -~~l~~L~~L~Ls~N~L~~l--p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             -CCCCcCcEEECCCCCCCcC--Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence             3345555555555554421  11   3455555555555 4445555555555555555555554443333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=194.95  Aligned_cols=242  Identities=18%  Similarity=0.223  Sum_probs=186.4

Q ss_pred             eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751          141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL  219 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l  219 (492)
                      .+.+.........++ ..+.++++.|++++|.+.    ......|.++++|++|+|++|.++.++ ..|..+++|++|++
T Consensus        45 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLREVP-DGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSSCC-SCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCcCC-CCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            345555534444444 344788999999999876    355577899999999999999998554 77889999999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCc-cccCCcccceeecCC-CCcc
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALH-PRCC  296 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~-~~~~  296 (492)
                      ++|.++.+|...|..+++|++|++++|.+..+|. .+..+++|++|++++|...+.++. .+..+++|+.|++++ ....
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            9999998888766899999999999998888875 588899999999998665555554 567788888888874 3344


Q ss_pred             chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751          297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP  375 (492)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~  375 (492)
                      ++. +..+++|+.|++++|  ......+..+..+++|+.|++++    ..++.+.. .+..+ ++|++|+|++|.++...
T Consensus       200 ~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          200 IPN-LTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQ----SQIQVIERNAFDNL-QSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             CCC-CTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTT----CCCCEECTTSSTTC-TTCCEEECTTSCCCCCC
T ss_pred             ccc-cCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCC----CceeEEChhhhcCC-CCCCEEECCCCCCCccC
Confidence            455 788888999999888  45555567788888888888874    34444432 46677 88888888888887777


Q ss_pred             cccccCCCccCeEEEecccc
Q 045751          376 MPTLEKLPLLQVLKLKKNSY  395 (492)
Q Consensus       376 ~~~l~~l~~L~~L~l~~~~~  395 (492)
                      +..+..+++|+.|++++|.+
T Consensus       272 ~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSCE
T ss_pred             hhHhccccCCCEEEcCCCCc
Confidence            77778888888888887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=8.8e-23  Score=196.29  Aligned_cols=222  Identities=20%  Similarity=0.187  Sum_probs=113.5

Q ss_pred             EEEEEecCCcCC--CCchhhc-------cccccCEEEccCCCCc-cCchhHH-hcCCCccEEecCCCcccchHHHhhcc-
Q 045751          191 LRVLDLGSLVLS--QLPSGIE-------NLFFLRYLKLNIPSLK-SLPSSFL-SSISNLYTLDMPFSYIHHTADVFWEM-  258 (492)
Q Consensus       191 L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~i~-~lp~~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l-  258 (492)
                      |++|++++|.++  .+|..+.       .+++|++|++++|.+. .+|..+| ..+++|++|++++|.+..+|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            555566666553  3444443       4566666666666665 4555432 55666666666666555555545554 


Q ss_pred             ----cccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhh--HHHHhhcCCC
Q 045751          259 ----NKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSL--LSKSLYKLSS  332 (492)
Q Consensus       259 ----~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~  332 (492)
                          ++|++|++++|.+.+..|..                      ++.+++|+.|++++|  ...+.  .+..+     
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N--~l~~~~~~~~~~-----  195 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQ----------------------VRVFPALSTLDLSDN--PELGERGLISAL-----  195 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTT----------------------CCCCSSCCEEECCSC--TTCHHHHHHHHS-----
T ss_pred             HhhcCCCcEEEeeCCCCccchHHH----------------------hccCCCCCEEECCCC--CcCcchHHHHHH-----
Confidence                56666666666554333333                      445555555555555  22221  22222     


Q ss_pred             CCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC--Cc-ccccCCCccCeEEEeccccCCCcccccCCCCcc
Q 045751          333 LESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED--PM-PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPK  409 (492)
Q Consensus       333 L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  409 (492)
                                          .+..+ ++|++|++++|.+...  .+ ..+.++++|+.|++++|.+.+......+..+++
T Consensus       196 --------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          196 --------------------CPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             --------------------CTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             --------------------HhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence                                11233 4455555555554321  11 122345566666666555554331122344556


Q ss_pred             ccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          410 LKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       410 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      |+.|++++| .++.+|..+.  ++|+.|++++|... .+|. +..+++|++|++++++
T Consensus       255 L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          255 LNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred             CCEEECCCC-ccChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence            666666665 4455554443  56666666666533 3344 5566666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=1.6e-21  Score=204.46  Aligned_cols=304  Identities=15%  Similarity=0.069  Sum_probs=187.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCccCchhHHhc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS  234 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~  234 (492)
                      +++|++|++++|.............+..+++|++|++++|.++     .++..+..+++|++|++++|.+..+|..+ .+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~-~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-KA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH-HH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH-hh
Confidence            4555555555554321111123334444455555555554443     22223334445555555554444444333 44


Q ss_pred             CC---------------------------CccEEecCCCcccchHHHhhcccccccccccccccCCCCC-ccccCCcccc
Q 045751          235 IS---------------------------NLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLN  286 (492)
Q Consensus       235 l~---------------------------~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~  286 (492)
                      ++                           +|+.|+++++....+|..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            44                           4444444444445567667788889999988887544333 3345678888


Q ss_pred             eeecCC--CCccchhhhCCCcccceEEeee----------ccCcchhhHHHHhhcCCCCCeEEeecCC-----------C
Q 045751          287 FISALH--PRCCTPDILGRLPNLRKLRIHG----------DLSNNQSLLSKSLYKLSSLESLKLVNES-----------K  343 (492)
Q Consensus       287 ~l~~~~--~~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~  343 (492)
                      .|++.+  ....++.....+++|++|++++          |.......+......+++|++|+++.+.           .
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence            887763  1112233245678888888884          3212233445555668888888885422           3


Q ss_pred             CCCccEEEee--------------------cCCCCCCceEEEEeccc--CCCCCccccc-CCCccCeEEEeccccCCCcc
Q 045751          344 MPRLSKIVLD--------------------EYQFPPSLTHLSFSNTE--LMEDPMPTLE-KLPLLQVLKLKKNSYLGRKL  400 (492)
Q Consensus       344 ~~~L~~L~l~--------------------~~~lp~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~  400 (492)
                      +++|+.|.+.                    +..+ ++|++|+++.|.  +++..+..++ .+++|+.|++++|.+++..+
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence            7788888772                    3347 899999998765  5444444454 58999999999999877665


Q ss_pred             cccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcCc-cchhccCCCCCcEEEecCC
Q 045751          401 TCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLKR-LPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       401 ~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c  466 (492)
                      +....++++|+.|++++|+ ++  .++.....+++|+.|++++|..... +......++.+....+...
T Consensus       481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            5556789999999999996 54  2344456799999999999996543 2223356788887777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=5.7e-21  Score=184.07  Aligned_cols=237  Identities=16%  Similarity=0.116  Sum_probs=173.8

Q ss_pred             CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFG  267 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~  267 (492)
                      ..++.++++.+.+...+ ..+..+++|++|++++|.+..+++..|.++++|++|++++|.+..++. +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            34667777777766444 444667899999999999998876555999999999999998877665 8899999999999


Q ss_pred             ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      +|.+.+ ++    ..++|+.+++++..-.-.. ...+++|+.|++++|.  .....+.                      
T Consensus        89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~--l~~~~~~----------------------  138 (317)
T 3o53_A           89 NNYVQE-LL----VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDL----------------------  138 (317)
T ss_dssp             SSEEEE-EE----ECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSC--CCSGGGB----------------------
T ss_pred             CCcccc-cc----CCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCC--CCCccch----------------------
Confidence            998642 11    2345555555421100001 1223444444444441  1111000                      


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccc-cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL-EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM  426 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  426 (492)
                           .+..+ ++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++.   .....+++|+.|++++| .++.++.
T Consensus       139 -----~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N-~l~~l~~  208 (317)
T 3o53_A          139 -----DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSN-KLAFMGP  208 (317)
T ss_dssp             -----CTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSS-CCCEECG
T ss_pred             -----hhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCC-cCCcchh
Confidence                 34556 889999999999877666666 4799999999999998754   22345899999999998 8888888


Q ss_pred             ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      .+..+++|+.|++++|... .+|..+..+++|+.|++++|+
T Consensus       209 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence            8999999999999999754 789899999999999999987

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=8.7e-21  Score=197.62  Aligned_cols=256  Identities=20%  Similarity=0.069  Sum_probs=183.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ..++++|+++++.+..    + +..+.  ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.    .+++|+
T Consensus        39 ~~~l~~L~ls~n~L~~----l-p~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~  104 (622)
T 3g06_A           39 NNGNAVLNVGESGLTT----L-PDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLL  104 (622)
T ss_dssp             HHCCCEEECCSSCCSC----C-CSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCC
T ss_pred             CCCCcEEEecCCCcCc----c-ChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCC
Confidence            3468888888887762    2 22222  688888888888888877   46788888888888888875    578888


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-CccchhhhCCCcccceEEeeeccCc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      +|++++|.+..+|.   .+++|+.|++++|.+.. +|..   +++|+.|++++. ...++   ..+.+|+.|++++|.  
T Consensus       105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~--  172 (622)
T 3g06_A          105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQ--  172 (622)
T ss_dssp             EEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC--
T ss_pred             EEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC---CccCCCCEEECCCCC--
Confidence            88888888888776   56788888888888753 5554   477888888642 11121   234678888888872  


Q ss_pred             chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751          319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR  398 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  398 (492)
                       ...+|   ..+++|+.|++++    ..++.    +...+++|+.|++++|.+.. .+.   .+++|+.|++++|.+++.
T Consensus       173 -l~~l~---~~~~~L~~L~Ls~----N~l~~----l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l  236 (622)
T 3g06_A          173 -LTSLP---MLPSGLQELSVSD----NQLAS----LPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL  236 (622)
T ss_dssp             -CSCCC---CCCTTCCEEECCS----SCCSC----CCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC
T ss_pred             -CCCCc---ccCCCCcEEECCC----CCCCC----CCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC
Confidence             23344   4567888888874    23332    22223788888888888753 222   347888888888877652


Q ss_pred             cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          399 KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                        +   ..+++|+.|++++| .++.+|.   .+++|+.|++++|... .+|..+.++++|+.|++++|+
T Consensus       237 --p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          237 --P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             --C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             --C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence              2   56688888888887 6777765   6788888888888654 788888888888888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=6.7e-21  Score=199.78  Aligned_cols=322  Identities=16%  Similarity=0.139  Sum_probs=216.4

Q ss_pred             CCeeEEEEecCCCCccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhcc
Q 045751          139 KMIKRLTANVNLSELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIEN  210 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~  210 (492)
                      .+++++.+..+.........+   +++|++|++.++...  +.......+.++++|++|++++|.++.     ++.....
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            478888888655444333333   799999999988432  122355666789999999999998662     3333346


Q ss_pred             ccccCEEEccCCC--Cc--cCchhHHhcCCCccEEecCCC-cccchHHHhhccccccccccccccc--------------
Q 045751          211 LFFLRYLKLNIPS--LK--SLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTL--------------  271 (492)
Q Consensus       211 l~~L~~L~l~~~~--i~--~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~--------------  271 (492)
                      +++|++|+++++.  +.  .++.-+ .++++|++|++++| .+..+|..+..+++|++|+++.+..              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            7799999999886  33  233333 67899999999998 6777888888889999987654421              


Q ss_pred             ------------C----CCCCccccCCcccceeecCCCC---ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCC
Q 045751          272 ------------P----AYPRNDCGSLENLNFISALHPR---CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSS  332 (492)
Q Consensus       272 ------------~----~~~p~~~~~l~~L~~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~  332 (492)
                                  .    ..+|..+..+++|+.|++++..   ..+...+..+++|++|++++|  .....++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCC
Confidence                        0    1122222246788888887532   112233568899999999987  344455555567899


Q ss_pred             CCeEEeec---------CC-----------CCCCccEEEe-----------ec-CCCCCCceEEEEe--c----ccCCCC
Q 045751          333 LESLKLVN---------ES-----------KMPRLSKIVL-----------DE-YQFPPSLTHLSFS--N----TELMED  374 (492)
Q Consensus       333 L~~L~l~~---------~~-----------~~~~L~~L~l-----------~~-~~lp~~L~~L~L~--~----~~l~~~  374 (492)
                      |+.|++..         +.           .+++|+.|.+           .+ ..+ ++|++|+++  +    +.++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCC
Confidence            99999832         11           3788888866           12 247 889999998  3    334322


Q ss_pred             Cc-----ccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce--EEEccCccccccEEEEeecCCcCc
Q 045751          375 PM-----PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE--WTMGTGAMPKLECLIIDPCAYLKR  447 (492)
Q Consensus       375 ~~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~  447 (492)
                      ..     ..+..+++|+.|++++ .+++..+......+++|+.|++++|. ++.  +......+++|+.|++++|+....
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            11     1256788999999975 55544333222348899999999984 432  221225689999999999997432


Q ss_pred             -cchhccCCCCCcEEEecCCCH
Q 045751          448 -LPKQLWSVKRFKKLELWRPQP  468 (492)
Q Consensus       448 -lp~~l~~l~~L~~L~l~~c~~  468 (492)
                       ++..+..+++|++|++++|+.
T Consensus       497 ~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          497 ALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHhCCCCCEEeeeCCCC
Confidence             233456789999999999983

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=7.7e-21  Score=193.79  Aligned_cols=235  Identities=15%  Similarity=0.092  Sum_probs=166.8

Q ss_pred             cCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLN  265 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~  265 (492)
                      .+++|++|+|++|.++.+ |..++.+++|++|++++|.+..+++ + +.+++|++|++++|.+..+|.    .++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence            344899999999999865 4688999999999999999986665 5 899999999999998887763    38899999


Q ss_pred             ccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCC
Q 045751          266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMP  345 (492)
Q Consensus       266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  345 (492)
                      +++|.+.+..+.                         .+++|+.|++++|  ......|..++.+++|+.|++++    .
T Consensus       106 L~~N~l~~~~~~-------------------------~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~----N  154 (487)
T 3oja_A          106 AANNNISRVSCS-------------------------RGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL----N  154 (487)
T ss_dssp             CCSSCCCCEEEC-------------------------CCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT----S
T ss_pred             CcCCcCCCCCcc-------------------------ccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC----C
Confidence            999987543322                         2345555666655  23333344445555555555542    2


Q ss_pred             CccEEEe-ecC-CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce
Q 045751          346 RLSKIVL-DEY-QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE  423 (492)
Q Consensus       346 ~L~~L~l-~~~-~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  423 (492)
                      .+..... .+. .+ ++|++|+|++|.+.+.  .....+++|+.|++++|.+++.  +..+..+++|+.|++++| .++.
T Consensus       155 ~l~~~~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~  228 (487)
T 3oja_A          155 EIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVL  228 (487)
T ss_dssp             CCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCE
T ss_pred             CCCCcChHHHhhhC-CcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcc
Confidence            2332221 222 45 7777888888876543  2344688888888888887653  344677888888888887 6777


Q ss_pred             EEEccCccccccEEEEeecCCc-CccchhccCCCCCcEEEec
Q 045751          424 WTMGTGAMPKLECLIIDPCAYL-KRLPKQLWSVKRFKKLELW  464 (492)
Q Consensus       424 l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~  464 (492)
                      +|..++.+++|+.|++++|+.. ..+|..+..+++|+.+++.
T Consensus       229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8877888888888888888866 3566777778888777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-21  Score=188.41  Aligned_cols=227  Identities=16%  Similarity=0.114  Sum_probs=161.8

Q ss_pred             CeeEEEeecCCCCCCCchhHHHH-------hccCCcEEEEEecCCcCC-CCchhh--ccccccCEEEccCCCCccCchhH
Q 045751          162 YLHSLLCLSSESHHLDPLDCEKI-------CKMFKFLRVLDLGSLVLS-QLPSGI--ENLFFLRYLKLNIPSLKSLPSSF  231 (492)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~-------~~~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~l~~~~i~~lp~~~  231 (492)
                      .|+.|+++++.+..  . ..+..       +.++++|++|++++|.++ .+|..+  +.+++|++|++++|.+..+|..+
T Consensus        64 ~L~~L~L~~n~l~~--~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  140 (312)
T 1wwl_A           64 IIKSLSLKRLTVRA--A-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL  140 (312)
T ss_dssp             HHHHCCCCEEEEEE--E-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred             HHhhcccccccccC--C-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence            37788887776631  1 11122       237899999999999998 788776  89999999999999999888776


Q ss_pred             HhcC-----CCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchh-hhCCC
Q 045751          232 LSSI-----SNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPD-ILGRL  304 (492)
Q Consensus       232 ~~~l-----~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~-~l~~l  304 (492)
                       +.+     ++|++|++++|.+..++ ..++.+++|++|++++|.+.+..+                   .+.. .++.+
T Consensus       141 -~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l  200 (312)
T 1wwl_A          141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------------------LISALCPLKF  200 (312)
T ss_dssp             -HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-------------------HHHHSCTTSC
T ss_pred             -HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-------------------HHHHHHhccC
Confidence             777     99999999999998887 679999999999999998643211                   1111 03778


Q ss_pred             cccceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCc-ccccCC
Q 045751          305 PNLRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM-PTLEKL  382 (492)
Q Consensus       305 ~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l  382 (492)
                      ++|++|++++|.-.....++.. +..+                            ++|++|++++|.+.+..+ ..+..+
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAAR----------------------------VQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTT----------------------------CCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcC----------------------------CCCCEEECCCCcCCcccchhhhhhc
Confidence            8899999998832111233332 2333                            556666666666655443 345567


Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCc
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYL  445 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l  445 (492)
                      ++|+.|++++|.++.  ++..+.  ++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus       253 ~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCccCh--hhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence            788888888887762  233222  78888888887 6676665 778888888888888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=2.8e-21  Score=197.06  Aligned_cols=236  Identities=15%  Similarity=0.102  Sum_probs=179.3

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|++|++++|.+.    ...+..|.++++|++|+|++|.++..++ ++.+++|++|++++|.+..+|     ..++|+
T Consensus        33 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             CCCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence            459999999999886    3556789999999999999999986555 899999999999999999776     348999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN  319 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  319 (492)
                      +|++++|.+..++.  ..+++|+.|++++|.+.+..|..++.+++|+.|++                      ++|  ..
T Consensus       103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----------------------s~N--~l  156 (487)
T 3oja_A          103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL----------------------KLN--EI  156 (487)
T ss_dssp             EEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC----------------------TTS--CC
T ss_pred             EEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC----------------------CCC--CC
Confidence            99999999888764  35789999999999987766665555555555554                      444  22


Q ss_pred             hhhHHHHhh-cCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751          320 QSLLSKSLY-KLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR  398 (492)
Q Consensus       320 ~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  398 (492)
                      ....|..+. .+++|+.|++++    ..+..+. ....+ ++|++|++++|.+++.. +.++.+++|+.|++++|.+++ 
T Consensus       157 ~~~~~~~l~~~l~~L~~L~Ls~----N~l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-  228 (487)
T 3oja_A          157 DTVNFAELAASSDTLEHLNLQY----NFIYDVK-GQVVF-AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-  228 (487)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTT----SCCCEEE-CCCCC-TTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-
T ss_pred             CCcChHHHhhhCCcccEEecCC----Ccccccc-ccccC-CCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-
Confidence            222333333 455555555552    2233332 23346 89999999999986644 458899999999999999875 


Q ss_pred             cccccCCCCccccEEeecccCCc-ceEEEccCccccccEEEEe
Q 045751          399 KLTCGSHGFPKLKVLHLKSMLWL-EEWTMGTGAMPKLECLIID  440 (492)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~  440 (492)
                       ++..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus       229 -lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             4566788999999999999544 2566678889999998886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=4.9e-20  Score=174.76  Aligned_cols=220  Identities=17%  Similarity=0.110  Sum_probs=157.6

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFT  270 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~  270 (492)
                      ++++.+++.++.+|..+  .++|++|++++|.+..++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            67888888888888654  46899999999999988766558899999999999988777 5668888889999888886


Q ss_pred             -cCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccE
Q 045751          271 -LPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSK  349 (492)
Q Consensus       271 -~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~  349 (492)
                       +....|..                      +..+++|++|++++|  ......+.                        
T Consensus        92 ~l~~~~~~~----------------------~~~l~~L~~L~l~~n--~l~~~~~~------------------------  123 (285)
T 1ozn_A           92 QLRSVDPAT----------------------FHGLGRLHTLHLDRC--GLQELGPG------------------------  123 (285)
T ss_dssp             TCCCCCTTT----------------------TTTCTTCCEEECTTS--CCCCCCTT------------------------
T ss_pred             CccccCHHH----------------------hcCCcCCCEEECCCC--cCCEECHh------------------------
Confidence             43221222                      667777888888877  22222222                        


Q ss_pred             EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEcc
Q 045751          350 IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGT  428 (492)
Q Consensus       350 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~  428 (492)
                         .+..+ ++|++|++++|.+....+..++++++|+.|++++|.+++.. ...+..+++|+.|++++| .++.+ +..+
T Consensus       124 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~  197 (285)
T 1ozn_A          124 ---LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQN-RVAHVHPHAF  197 (285)
T ss_dssp             ---TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred             ---HhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCC-cccccCHhHc
Confidence               23344 67777777777776655566777888888888877765422 334667788888888887 45554 5567


Q ss_pred             CccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          429 GAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       429 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      ..+++|+.|++++|......+..+..+++|++|++++++
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            778888888888887665444567888888888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=1.6e-19  Score=170.31  Aligned_cols=84  Identities=20%  Similarity=0.176  Sum_probs=43.5

Q ss_pred             CCceEEEEecccCCCCCcccccCCCccC----eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cCcccc
Q 045751          359 PSLTHLSFSNTELMEDPMPTLEKLPLLQ----VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPK  433 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~  433 (492)
                      ++|++|++++|.+.+..+..+..+++|+    .|++++|.+.+.  +.......+|+.|++++| .++.++.. +..+++
T Consensus       149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTS  225 (276)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCS
T ss_pred             CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc--CccccCCCcccEEECCCC-ceeecCHhHhccccc
Confidence            5555555556655544444444444444    566666655432  122222335666666665 45554433 355666


Q ss_pred             ccEEEEeecCCc
Q 045751          434 LECLIIDPCAYL  445 (492)
Q Consensus       434 L~~L~l~~c~~l  445 (492)
                      |+.|++++|+..
T Consensus       226 L~~L~l~~N~~~  237 (276)
T 2z62_A          226 LQKIWLHTNPWD  237 (276)
T ss_dssp             CCEEECCSSCBC
T ss_pred             ccEEEccCCccc
Confidence            666666666544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.9e-19  Score=169.56  Aligned_cols=90  Identities=13%  Similarity=0.016  Sum_probs=66.7

Q ss_pred             hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751          185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL  264 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L  264 (492)
                      +.++++++.++++++.++.+|..+.  +++++|++++|.+..++...|.++++|++|++++|.+..++.. +.+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            4567778888888888887776654  5788888888888866655458888888888888877777653 677888888


Q ss_pred             cccccccCCCCCcc
Q 045751          265 NFGLFTLPAYPRND  278 (492)
Q Consensus       265 ~L~~~~~~~~~p~~  278 (492)
                      ++++|.+. .+|..
T Consensus        83 ~Ls~N~l~-~l~~~   95 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLL   95 (290)
T ss_dssp             ECCSSCCS-SCCCC
T ss_pred             ECCCCcCC-cCchh
Confidence            88887763 34433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=5.9e-20  Score=178.45  Aligned_cols=255  Identities=16%  Similarity=0.171  Sum_probs=156.6

Q ss_pred             CeeEEEeecCCCCCCCchhHHHHhccC--CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCc-c-CchhHHhcCCC
Q 045751          162 YLHSLLCLSSESHHLDPLDCEKICKMF--KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK-S-LPSSFLSSISN  237 (492)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~-~-lp~~~~~~l~~  237 (492)
                      .+++++++++...       +..+..+  +++++|++++|.++..+..+..+++|++|++++|.+. . +|..+ ..+++
T Consensus        48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCC
T ss_pred             hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCC
Confidence            3666777666543       2444444  6677777777776655544566777777777777766 2 55555 77777


Q ss_pred             ccEEecCCCccc-chHHHhhccccccccccccc-ccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLF-TLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~-~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      |++|++++|.+. ..|..++.+++|++|++++| .+.+.                     .++..+..+++|++|++++|
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCC
Confidence            777777777654 45556677777777777766 33211                     12222556677777777776


Q ss_pred             cCcchhhHHHHhhcCC-CCCeEEeecCCCCC-CccE--EEeecCCCCCCceEEEEeccc-CCCCCcccccCCCccCeEEE
Q 045751          316 LSNNQSLLSKSLYKLS-SLESLKLVNESKMP-RLSK--IVLDEYQFPPSLTHLSFSNTE-LMEDPMPTLEKLPLLQVLKL  390 (492)
Q Consensus       316 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~-~L~~--L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l  390 (492)
                      .......++..+..++ +|+.|++++   +. .+..  +.-.+..+ ++|++|++++|. +++..+..++++++|+.|++
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            2122223566666777 777777763   21 1211  11033456 788888888887 66666777888899999999


Q ss_pred             eccc-cCCCcccccCCCCccccEEeecccCCcceEEEccCcc-ccccEEEEeecCCcCccchhccC
Q 045751          391 KKNS-YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAM-PKLECLIIDPCAYLKRLPKQLWS  454 (492)
Q Consensus       391 ~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~  454 (492)
                      ++|. +.... ...+..+++|+.|++++|  +..-  .+..+ .+|+.|++++|...+..|..+.+
T Consensus       255 ~~~~~~~~~~-~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          255 SRCYDIIPET-LLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCTTCCGGG-GGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCCCHHH-HHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCcccc
Confidence            8884 33222 223567889999999887  2210  12233 34667778877777666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=9.6e-19  Score=167.61  Aligned_cols=188  Identities=18%  Similarity=0.218  Sum_probs=89.4

Q ss_pred             CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccc
Q 045751          188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFG  267 (492)
Q Consensus       188 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~  267 (492)
                      +++|++|++++|.++.++ .+..+++|++|++++|.+..++. + ..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            344555555555555444 34555555555555555555544 3 55555555555555554444 25555555555555


Q ss_pred             ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751          268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL  347 (492)
Q Consensus       268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  347 (492)
                      +|.+.+ +                      +. +..+++|+.|++++|.  .. .++. +..+++|+.|++++    ..+
T Consensus       116 ~n~l~~-~----------------------~~-l~~l~~L~~L~l~~n~--l~-~~~~-l~~l~~L~~L~l~~----n~l  163 (308)
T 1h6u_A          116 STQITD-V----------------------TP-LAGLSNLQVLYLDLNQ--IT-NISP-LAGLTNLQYLSIGN----AQV  163 (308)
T ss_dssp             TSCCCC-C----------------------GG-GTTCTTCCEEECCSSC--CC-CCGG-GGGCTTCCEEECCS----SCC
T ss_pred             CCCCCC-c----------------------hh-hcCCCCCCEEECCCCc--cC-cCcc-ccCCCCccEEEccC----CcC
Confidence            554321 1                      11 3344444444444441  11 1111 22333333333321    011


Q ss_pred             cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                      +.+. .+..+ ++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..   .+..+++|+.|++++|
T Consensus       164 ~~~~-~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          164 SDLT-PLANL-SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCCG-GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE
T ss_pred             CCCh-hhcCC-CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC
Confidence            1110 13344 666666666666643322  566666666666666665432   2456666666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=2.6e-19  Score=168.48  Aligned_cols=91  Identities=21%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEE
Q 045751          359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLI  438 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~  438 (492)
                      ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..+++|+.|++++|+.       .+.+|+|+.|+
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~  228 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLS  228 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB-------CCCTTTTHHHH
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCc-------cccCcHHHHHH
Confidence            45555555555554444444555666666666665555422 23345566666666666521       23455666666


Q ss_pred             EeecCCcCccchhccCCCC
Q 045751          439 IDPCAYLKRLPKQLWSVKR  457 (492)
Q Consensus       439 l~~c~~l~~lp~~l~~l~~  457 (492)
                      +..|.....+|..++.++.
T Consensus       229 ~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          229 EWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             HHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHhCCCcccCcccccCC
Confidence            6666655566665554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=9.7e-19  Score=164.95  Aligned_cols=205  Identities=20%  Similarity=0.189  Sum_probs=100.7

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .++|++|++++|.+.    ......|.++++|++|++++|.++.++ ..+..+++|++|++++|.+..++...|.++++|
T Consensus        27 ~~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           27 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             CTTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            345555665555543    122334555555555555555555333 345555555555555555554443333555555


Q ss_pred             cEEecCCCcccchHH-HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751          239 YTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS  317 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  317 (492)
                      ++|++++|.+..++. .++.+++|++|++++|.+.+.                    ..+.. ++.+++|+.|++++|. 
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~l~~~-~~~l~~L~~L~Ls~N~-  160 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------------------KLPEY-FSNLTNLEHLDLSSNK-  160 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------------CCCGG-GGGCTTCCEEECCSSC-
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------------------cCchh-hccCCCCCEEECCCCC-
Confidence            555555555544443 255555555555555544321                    11222 6666667777777662 


Q ss_pred             cchhhHHHHhhcCCCCC----eEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEecc
Q 045751          318 NNQSLLSKSLYKLSSLE----SLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN  393 (492)
Q Consensus       318 ~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  393 (492)
                       .....+..+..+++|+    .|++++    ..+..+....... .+|++|++++|.+.+..+..+.++++|+.|++++|
T Consensus       161 -l~~~~~~~~~~l~~L~~l~l~L~ls~----n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          161 -IQSIYCTDLRVLHQMPLLNLSLDLSL----NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             -CCEECGGGGHHHHTCTTCCEEEECCS----SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             -CCcCCHHHhhhhhhccccceeeecCC----CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence             2222222333333333    444442    2222221112222 35666666666655444444555666666666655


Q ss_pred             ccC
Q 045751          394 SYL  396 (492)
Q Consensus       394 ~~~  396 (492)
                      .+.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=3e-20  Score=194.79  Aligned_cols=110  Identities=12%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             cCCCCCCceEEEEecccCCCCCcccccC-CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce--EEEccCc
Q 045751          354 EYQFPPSLTHLSFSNTELMEDPMPTLEK-LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE--WTMGTGA  430 (492)
Q Consensus       354 ~~~lp~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~  430 (492)
                      +..+ ++|++|++++ .+++..+..++. +++|+.|++++|.+++..+.....++++|+.|++++|+. +.  +......
T Consensus       428 ~~~~-~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~  504 (594)
T 2p1m_B          428 VEHC-KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASK  504 (594)
T ss_dssp             HHHC-TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGG
T ss_pred             HhhC-CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHh
Confidence            4467 7999999977 555555555654 899999999999887655444346689999999999965 42  2234567


Q ss_pred             cccccEEEEeecCCcCccchhc-cCCCCCcEEEecCC
Q 045751          431 MPKLECLIIDPCAYLKRLPKQL-WSVKRFKKLELWRP  466 (492)
Q Consensus       431 l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c  466 (492)
                      +++|+.|++++|+....-...+ ..+++|+...+.+.
T Consensus       505 l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          505 LETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             GGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999998743222223 55678876666544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2e-18  Score=162.17  Aligned_cols=79  Identities=25%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccc
Q 045751          191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLF  269 (492)
Q Consensus       191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~  269 (492)
                      .+.++++++.++.+|..+.  ++|++|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            3445555555555554332  3455555555555555443335555555555555555554433 244555555555555


Q ss_pred             cc
Q 045751          270 TL  271 (492)
Q Consensus       270 ~~  271 (492)
                      .+
T Consensus        96 ~l   97 (270)
T 2o6q_A           96 KL   97 (270)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=4.1e-19  Score=167.12  Aligned_cols=149  Identities=21%  Similarity=0.296  Sum_probs=89.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|+.|.+.++.+..      ...+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++...|+++++|+
T Consensus        40 l~~L~~L~l~~~~i~~------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECTTSCCCC------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccceeeeeeCCCCccc------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            5666666666665541      123566677777777777666543 466667777777777777766655446677777


Q ss_pred             EEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751          240 TLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++  ....++..++.+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            777777766665543 56667777777777666543333344455555555542  12222222456666666666666

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=2e-18  Score=162.19  Aligned_cols=105  Identities=27%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccE
Q 045751          162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYT  240 (492)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~  240 (492)
                      ..++++++++....    + +..+  .++++.|++++|.++.++ ..+..+++|++|++++|.+..+|..+|.++++|++
T Consensus        17 ~~~~l~~~~~~l~~----i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA----I-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCSS----C-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCCc----c-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            45566666655541    1 1111  245777777777777555 35677777777777777777777766677777777


Q ss_pred             EecCCCcccchHHH-hhcccccccccccccccCC
Q 045751          241 LDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPA  273 (492)
Q Consensus       241 L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~  273 (492)
                      |++++|.+..+|.. +..+++|++|++++|.+.+
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            77777777666543 5667777777777776643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=4.3e-20  Score=183.03  Aligned_cols=110  Identities=16%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             cCCCCCCceEEEEecccCC----CCCcccccCCCccCeEEEeccccCCCcc---cccC--CCCccccEEeecccCCcce-
Q 045751          354 EYQFPPSLTHLSFSNTELM----EDPMPTLEKLPLLQVLKLKKNSYLGRKL---TCGS--HGFPKLKVLHLKSMLWLEE-  423 (492)
Q Consensus       354 ~~~lp~~L~~L~L~~~~l~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~l~~-  423 (492)
                      +..+ ++|++|+|++|.++    ...+..+..+++|+.|++++|.+.+...   +..+  +.+++|+.|++++| .++. 
T Consensus       212 l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~  289 (386)
T 2ca6_A          212 LAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELD  289 (386)
T ss_dssp             GGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred             hhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence            3445 78888888888875    3455677889999999999998875421   2222  44899999999998 5554 


Q ss_pred             ----EEEcc-CccccccEEEEeecCCcCccc--hhc-cCCCCCcEEEecC
Q 045751          424 ----WTMGT-GAMPKLECLIIDPCAYLKRLP--KQL-WSVKRFKKLELWR  465 (492)
Q Consensus       424 ----l~~~~-~~l~~L~~L~l~~c~~l~~lp--~~l-~~l~~L~~L~l~~  465 (492)
                          +|..+ .++++|+.|++++|+.....+  ..+ ..+++++.+++..
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence                66655 568999999999998776443  222 3345555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.7e-18  Score=159.59  Aligned_cols=208  Identities=21%  Similarity=0.295  Sum_probs=143.0

Q ss_pred             CCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc-ccchHH-Hhhcccccccccccc-cccCCCCCc
Q 045751          201 LSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY-IHHTAD-VFWEMNKLRHLNFGL-FTLPAYPRN  277 (492)
Q Consensus       201 l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~L~~-~~~~~~~p~  277 (492)
                      ++.+|. +.  .+|++|++++|.++.+|...|.++++|++|++++|. ++.++. .+..+++|++|++++ |.+.. +| 
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~-   97 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-ID-   97 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-EC-
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cC-
Confidence            566666 33  378888888888887777555788888888888885 777765 467788888888877 65532 11 


Q ss_pred             cccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCC
Q 045751          278 DCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF  357 (492)
Q Consensus       278 ~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~l  357 (492)
                                          +..+..+++|+.|++++|.  . ..+|. +..+                        ..+
T Consensus        98 --------------------~~~f~~l~~L~~L~l~~n~--l-~~lp~-~~~l------------------------~~L  129 (239)
T 2xwt_C           98 --------------------PDALKELPLLKFLGIFNTG--L-KMFPD-LTKV------------------------YST  129 (239)
T ss_dssp             --------------------TTSEECCTTCCEEEEEEEC--C-CSCCC-CTTC------------------------CBC
T ss_pred             --------------------HHHhCCCCCCCEEeCCCCC--C-ccccc-cccc------------------------ccc
Confidence                                1116677778888888872  1 11221 1111                        112


Q ss_pred             CCCceEEEEecc-cCCCCCcccccCCCccC-eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCcc-cc
Q 045751          358 PPSLTHLSFSNT-ELMEDPMPTLEKLPLLQ-VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAM-PK  433 (492)
Q Consensus       358 p~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~  433 (492)
                       +.|++|++++| .+....+..+.++++|+ .|++++|.+.. .....+.. ++|+.|++++|+.++.++. .+..+ ++
T Consensus       130 -~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          130 -DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             -CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             -ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence             33458888888 77666666788899999 99999888763 21222333 7899999999866887764 47788 99


Q ss_pred             ccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          434 LECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       434 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                      |+.|++++|... .+|..  .+++|+.|++.++.
T Consensus       207 L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          207 PSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            999999998754 56654  68899999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=1.5e-19  Score=179.13  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=135.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCchhh-------ccccccCEEEccCCCCcc--
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLPSGI-------ENLFFLRYLKLNIPSLKS--  226 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~~~~-------~~l~~L~~L~l~~~~i~~--  226 (492)
                      +++|++|++++|.+...........+.++++|++|+|++|.+.    .+|..+       ..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            7889999999887752111123445778999999999987544    345444       678899999999998885  


Q ss_pred             ---CchhHHhcCCCccEEecCCCcccc-----hHHHhhcc---------cccccccccccccC-CCCC---ccccCCccc
Q 045751          227 ---LPSSFLSSISNLYTLDMPFSYIHH-----TADVFWEM---------NKLRHLNFGLFTLP-AYPR---NDCGSLENL  285 (492)
Q Consensus       227 ---lp~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l---------~~L~~L~L~~~~~~-~~~p---~~~~~l~~L  285 (492)
                         +|..+ ..+++|++|++++|.++.     ++..+..+         ++|++|++++|.+. ..+|   ..+..+++|
T Consensus       111 ~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               66666 889999999999997753     33445555         88999999888875 2233   233345555


Q ss_pred             ceeecCCCCc-------cchhhhCCCcccceEEeeeccCcch----hhHHHHhhcCCCCCeEEeecCCCCCCccEEEeec
Q 045751          286 NFISALHPRC-------CTPDILGRLPNLRKLRIHGDLSNNQ----SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDE  354 (492)
Q Consensus       286 ~~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~  354 (492)
                      +.|++++..-       ..+..+..+++|+.|++++|  ...    ..++..+..+                        
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~~~------------------------  243 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSW------------------------  243 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGGGC------------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHHccC------------------------
Confidence            5555543111       11212445555555555555  221    3344444444                        


Q ss_pred             CCCCCCceEEEEecccCCCC----Ccccc--cCCCccCeEEEeccccCCCc---ccccC-CCCccccEEeeccc
Q 045751          355 YQFPPSLTHLSFSNTELMED----PMPTL--EKLPLLQVLKLKKNSYLGRK---LTCGS-HGFPKLKVLHLKSM  418 (492)
Q Consensus       355 ~~lp~~L~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~l~~~~~~~~~---~~~~~-~~~~~L~~L~l~~~  418 (492)
                          ++|++|+|++|.+.+.    .+..+  +.+++|+.|++++|.+++..   ++..+ ..+++|++|++++|
T Consensus       244 ----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          244 ----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             ----TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ----CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence                4555555555554332    12233  23566666666666554421   12222 34566666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=5.4e-18  Score=162.40  Aligned_cols=206  Identities=17%  Similarity=0.179  Sum_probs=160.6

Q ss_pred             ecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCC
Q 045751          196 LGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYP  275 (492)
Q Consensus       196 L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~  275 (492)
                      +..+.++... ....+++|++|+++++.+..+| .+ ..+++|++|++++|.+..++. +..+++|++|++++|.+.+  
T Consensus        26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~--   99 (308)
T 1h6u_A           26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN--   99 (308)
T ss_dssp             TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC--
T ss_pred             hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC--
Confidence            3344444322 2456889999999999999887 46 899999999999999988887 9999999999999987642  


Q ss_pred             CccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecC
Q 045751          276 RNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEY  355 (492)
Q Consensus       276 p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~  355 (492)
                                           ++. +..+++|+.|++++|.  . ..++ .+..+++|+.|+++++    .+..+. .+.
T Consensus       100 ---------------------~~~-~~~l~~L~~L~l~~n~--l-~~~~-~l~~l~~L~~L~l~~n----~l~~~~-~l~  148 (308)
T 1h6u_A          100 ---------------------VSA-IAGLQSIKTLDLTSTQ--I-TDVT-PLAGLSNLQVLYLDLN----QITNIS-PLA  148 (308)
T ss_dssp             ---------------------CGG-GTTCTTCCEEECTTSC--C-CCCG-GGTTCTTCCEEECCSS----CCCCCG-GGG
T ss_pred             ---------------------chh-hcCCCCCCEEECCCCC--C-CCch-hhcCCCCCCEEECCCC----ccCcCc-ccc
Confidence                                 122 7788899999999983  2 2233 3888999999999852    333222 366


Q ss_pred             CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCcccccc
Q 045751          356 QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLE  435 (492)
Q Consensus       356 ~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~  435 (492)
                      .+ ++|++|++++|.+.+..+  +..+++|+.|++++|.+.+...   +..+++|+.|++++| .++.++ .+..+++|+
T Consensus       149 ~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~  220 (308)
T 1h6u_A          149 GL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN-QISDVS-PLANTSNLF  220 (308)
T ss_dssp             GC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCC
T ss_pred             CC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCC-ccCccc-cccCCCCCC
Confidence            77 899999999999865333  8899999999999998876432   678899999999998 677666 378999999


Q ss_pred             EEEEeecCCcC
Q 045751          436 CLIIDPCAYLK  446 (492)
Q Consensus       436 ~L~l~~c~~l~  446 (492)
                      .|++++|+...
T Consensus       221 ~L~l~~N~i~~  231 (308)
T 1h6u_A          221 IVTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEccCCeeec
Confidence            99999998653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=2.6e-18  Score=167.75  Aligned_cols=53  Identities=11%  Similarity=0.191  Sum_probs=25.2

Q ss_pred             EEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcc
Q 045751          194 LDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       194 L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      ++.+++.++.+|..+  .+++++|++++|+|+.+|+..|.++++|++|+|++|.+
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i   66 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV   66 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence            344444444444433  13455555555555555544335555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=4.2e-18  Score=161.60  Aligned_cols=199  Identities=21%  Similarity=0.215  Sum_probs=121.7

Q ss_pred             hccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccc
Q 045751          208 IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLN  286 (492)
Q Consensus       208 ~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~  286 (492)
                      ++++++++.++++++.++.+|..+   .++++.|++++|.+..++ ..+..+++|++|++++|.+.+ ++.         
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~---------   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV---------   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC---------
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC---------
Confidence            567889999999999999999877   378999999999887774 568899999999999987642 111         


Q ss_pred             eeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEE
Q 045751          287 FISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF  366 (492)
Q Consensus       287 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L  366 (492)
                                    .+.+++|+.|++++|.   ...+|..+.                           .+ ++|++|++
T Consensus        73 --------------~~~l~~L~~L~Ls~N~---l~~l~~~~~---------------------------~l-~~L~~L~l  107 (290)
T 1p9a_G           73 --------------DGTLPVLGTLDLSHNQ---LQSLPLLGQ---------------------------TL-PALTVLDV  107 (290)
T ss_dssp             --------------CSCCTTCCEEECCSSC---CSSCCCCTT---------------------------TC-TTCCEEEC
T ss_pred             --------------CCCCCcCCEEECCCCc---CCcCchhhc---------------------------cC-CCCCEEEC
Confidence                          2456667777777762   222222223                           33 45555555


Q ss_pred             ecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cCccccccEEEEeecCCc
Q 045751          367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPKLECLIIDPCAYL  445 (492)
Q Consensus       367 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l  445 (492)
                      ++|.++...+..+.++++|+.|++++|.+.... +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|...
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            555554444445555555555555555554321 222345555555555555 44444433 344555555555555432


Q ss_pred             CccchhccCCCCCcEEEecCCC
Q 045751          446 KRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       446 ~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                       .+|..+..+++|+.++++++|
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCC
T ss_pred             -ccChhhcccccCCeEEeCCCC
Confidence             455555555555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=7e-19  Score=170.85  Aligned_cols=246  Identities=17%  Similarity=0.159  Sum_probs=169.4

Q ss_pred             CeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-C-CchhhccccccCE
Q 045751          140 MIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-Q-LPSGIENLFFLRY  216 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~-l~~~~~~l~~L~~  216 (492)
                      ..+++.+..+.........+ .++++.|++.++.+..    . ...+.++++|++|++++|.++ . ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~----~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ----P-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS----C-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccc----c-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            46677776443331111111 4899999999988762    1 222567999999999999988 3 8888999999999


Q ss_pred             EEccCCCCc-cCchhHHhcCCCccEEecCCC-ccc--chHHHhhccccccccccccc-ccCCCCCccccCCcccceeecC
Q 045751          217 LKLNIPSLK-SLPSSFLSSISNLYTLDMPFS-YIH--HTADVFWEMNKLRHLNFGLF-TLPAYPRNDCGSLENLNFISAL  291 (492)
Q Consensus       217 L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~-~l~--~lp~~~~~l~~L~~L~L~~~-~~~~~~p~~~~~l~~L~~l~~~  291 (492)
                      |++++|.+. ..+..+ +.+++|++|++++| .++  .++..+..+++|++|++++| .+.+.                 
T Consensus       123 L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----------------
T ss_pred             EeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----------------
Confidence            999999988 667777 89999999999999 676  47888999999999999999 65321                 


Q ss_pred             CCCccchhhhCCCc-ccceEEeeecc-CcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEec
Q 045751          292 HPRCCTPDILGRLP-NLRKLRIHGDL-SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSN  368 (492)
Q Consensus       292 ~~~~~~~~~l~~l~-~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~  368 (492)
                          .++..+..++ +|++|++++|. ......++..+..+++|+.|++++   +..+..-.+ .+..+ ++|++|++++
T Consensus       185 ----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~l-~~L~~L~l~~  256 (336)
T 2ast_B          185 ----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFQL-NYLQHLSLSR  256 (336)
T ss_dssp             ----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGGGGGGC-TTCCEEECTT
T ss_pred             ----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHHHHhCC-CCCCEeeCCC
Confidence                1112256667 77777777763 122256677777788888888874   322221111 45667 8888888888


Q ss_pred             cc-CCCCCcccccCCCccCeEEEeccccCCCcccccCCCC-ccccEEeecccCCcc
Q 045751          369 TE-LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGF-PKLKVLHLKSMLWLE  422 (492)
Q Consensus       369 ~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~  422 (492)
                      |. +.......++++++|+.|++++| +....+.    .+ .+++.|++++| .++
T Consensus       257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~----~l~~~l~~L~l~~n-~l~  306 (336)
T 2ast_B          257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ----LLKEALPHLQINCS-HFT  306 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH----HHHHHSTTSEESCC-CSC
T ss_pred             CCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH----HHHhhCcceEEecc-cCc
Confidence            85 33333345778888999998877 4433221    22 23555567766 444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=1.4e-18  Score=160.27  Aligned_cols=82  Identities=20%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             cEEEEEecCCcCCCCch-hhccccccCEEEccCCC-CccCchhHHhcCCCccEEecCC-CcccchHH-Hhhccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPS-LKSLPSSFLSSISNLYTLDMPF-SYIHHTAD-VFWEMNKLRHLN  265 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~-i~~lp~~~~~~l~~L~~L~L~~-~~l~~lp~-~~~~l~~L~~L~  265 (492)
                      +|++|++++|.++.+|. .+..+++|++|++++|. ++.++...|.++++|++|++++ |.++.+|. .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554432 44555555555555554 5555443335555555555555 45544442 244555555555


Q ss_pred             cccccc
Q 045751          266 FGLFTL  271 (492)
Q Consensus       266 L~~~~~  271 (492)
                      +++|.+
T Consensus       112 l~~n~l  117 (239)
T 2xwt_C          112 IFNTGL  117 (239)
T ss_dssp             EEEECC
T ss_pred             CCCCCC
Confidence            555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=1.9e-18  Score=169.53  Aligned_cols=92  Identities=20%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             HHHHhccCCcEEEEEecCCcCCCCc-----hhhcccc-ccCEEEccCCCCccCchhHHhcC-----CCccEEecCCCccc
Q 045751          181 CEKICKMFKFLRVLDLGSLVLSQLP-----SGIENLF-FLRYLKLNIPSLKSLPSSFLSSI-----SNLYTLDMPFSYIH  249 (492)
Q Consensus       181 ~~~~~~~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~l~~~~i~~lp~~~~~~l-----~~L~~L~L~~~~l~  249 (492)
                      .+.++...++|++|++++|.++..+     ..+..++ +|++|++++|.+.......|..+     ++|++|++++|.++
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            3344444444555555555555332     3444455 55555555555553322111332     55555555555443


Q ss_pred             chH-HH----hhcc-cccccccccccccC
Q 045751          250 HTA-DV----FWEM-NKLRHLNFGLFTLP  272 (492)
Q Consensus       250 ~lp-~~----~~~l-~~L~~L~L~~~~~~  272 (492)
                      ..+ ..    +..+ ++|++|++++|.+.
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            322 21    2222 45555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=4.7e-19  Score=173.94  Aligned_cols=248  Identities=13%  Similarity=0.088  Sum_probs=140.4

Q ss_pred             EEEecCCcCC-CCchhhccccccCEEEccCCCCccCch----hHHhcCC-CccEEecCCCcccch-HHHhhcc-----cc
Q 045751          193 VLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLKSLPS----SFLSSIS-NLYTLDMPFSYIHHT-ADVFWEM-----NK  260 (492)
Q Consensus       193 ~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~~lp~----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~~  260 (492)
                      +++++.|.++ .+|..+...++|++|++++|.+...+.    ..|..++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4678888888 455655666679999999999997775    4448888 999999999988665 4556665     89


Q ss_pred             cccccccccccCCCCCccccC----C-cccceeecCCCC--ccc----hhhhCC-CcccceEEeeecc--CcchhhHHHH
Q 045751          261 LRHLNFGLFTLPAYPRNDCGS----L-ENLNFISALHPR--CCT----PDILGR-LPNLRKLRIHGDL--SNNQSLLSKS  326 (492)
Q Consensus       261 L~~L~L~~~~~~~~~p~~~~~----l-~~L~~l~~~~~~--~~~----~~~l~~-l~~L~~L~l~~~~--~~~~~~~~~~  326 (492)
                      |++|++++|.+.+..+..+..    + ++|+.|++++..  ...    ...+.. .++|++|++++|.  ......++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999987665554433    3 667777666311  111    111333 2467777776663  1112344555


Q ss_pred             hhcCC-CCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCCcc----cccC-CCccCeEEEecccc
Q 045751          327 LYKLS-SLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDPMP----TLEK-LPLLQVLKLKKNSY  395 (492)
Q Consensus       327 l~~l~-~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~~----~l~~-l~~L~~L~l~~~~~  395 (492)
                      +...+ +|+.|+++++    .+.....     .+..+|++|++|++++|.+.+....    .+.. .++|+.|++++|.+
T Consensus       162 l~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          162 LAAIPANVNSLNLRGN----NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HhcCCccccEeeecCC----CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            55554 5666666531    1211110     1223323566666666655443222    2222 23566666665555


Q ss_pred             CCCcc---cccCCCCccccEEeecccC--C-----cceEEEccCccccccEEEEeecCC
Q 045751          396 LGRKL---TCGSHGFPKLKVLHLKSML--W-----LEEWTMGTGAMPKLECLIIDPCAY  444 (492)
Q Consensus       396 ~~~~~---~~~~~~~~~L~~L~l~~~~--~-----l~~l~~~~~~l~~L~~L~l~~c~~  444 (492)
                      .+...   ...+..+++|+.|++++|.  .     +..++..+..+++|+.|++++|+.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            54321   2223455556666665552  0     112222344555555555555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=4.2e-18  Score=163.42  Aligned_cols=228  Identities=16%  Similarity=0.104  Sum_probs=130.9

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHH--HhccCCcEEEEEecCCcCC-CCchhh--ccccccCEEEccCCCCcc-Cc----h
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEK--ICKMFKFLRVLDLGSLVLS-QLPSGI--ENLFFLRYLKLNIPSLKS-LP----S  229 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~l~~~~i~~-lp----~  229 (492)
                      ...++.+.+.+....   ......  .+..+++|++|++++|.++ ..|..+  ..+++|++|++++|.+.. .+    .
T Consensus        63 ~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           63 ALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            445667777666553   111111  1223456888888888776 555555  777888888888887773 22    2


Q ss_pred             hHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCC--CCccccCCcccceeecCCCCccchhhhCCCcc
Q 045751          230 SFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAY--PRNDCGSLENLNFISALHPRCCTPDILGRLPN  306 (492)
Q Consensus       230 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~  306 (492)
                      .+ ..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+.  ++.                    ...++.+++
T Consensus       140 ~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------~~~~~~l~~  198 (310)
T 4glp_A          140 QQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA--------------------ALCPHKFPA  198 (310)
T ss_dssp             HT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT--------------------TSCTTSSCC
T ss_pred             Hh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH--------------------HHhhhcCCC
Confidence            22 45777777777777766554 3466777777777777764321  110                    000356677


Q ss_pred             cceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCC---
Q 045751          307 LRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKL---  382 (492)
Q Consensus       307 L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l---  382 (492)
                      |++|++++|.-......+.. ++.+                            ++|++|++++|.+.+..|..++.+   
T Consensus       199 L~~L~Ls~N~l~~l~~~~~~l~~~l----------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          199 IQNLALRNTGMETPTGVCAALAAAG----------------------------VQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCSCBCCSSCCCCHHHHHHHHHHHT----------------------------CCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCCchHHHHHHHHhcC----------------------------CCCCEEECCCCCCCccchhhHHhccCc
Confidence            88888887731111222222 2333                            455555566666655545555444   


Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCc
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYL  445 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l  445 (492)
                      ++|+.|++++|.++..  +...  +++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus       251 ~~L~~L~Ls~N~l~~l--p~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQV--PKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSC--CSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCch--hhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCCC
Confidence            5777777777766521  2222  366777777766 5555543 456666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=8.1e-17  Score=154.43  Aligned_cols=224  Identities=14%  Similarity=0.060  Sum_probs=141.7

Q ss_pred             CCeeEEEEecCCCCcccc----ccc-CCCeeEEEeecCCCCCCCchhHHHHh--ccCCcEEEEEecCCcCCC-Cc----h
Q 045751          139 KMIKRLTANVNLSELDSL----EDF-NLYLHSLLCLSSESHHLDPLDCEKIC--KMFKFLRVLDLGSLVLSQ-LP----S  206 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~l~~-l~----~  206 (492)
                      .+++++.+..........    ... .++|+.|++++|....    ..+..+  .++++|++|++++|.++. .+    .
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            357778877433322111    112 6779999999988752    333344  788999999999998873 22    3


Q ss_pred             hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc---hHHH--hhcccccccccccccccCCCCCccccC
Q 045751          207 GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH---TADV--FWEMNKLRHLNFGLFTLPAYPRNDCGS  281 (492)
Q Consensus       207 ~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~---lp~~--~~~l~~L~~L~L~~~~~~~~~p~~~~~  281 (492)
                      .+..+++|++|++++|.+..++...|+.+++|++|++++|.+..   ++..  +..+++|++|++++|.+.. ++.    
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~----  214 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG----  214 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH----
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH----
Confidence            44578899999999999987776555899999999999997643   4332  3678899999999987631 111    


Q ss_pred             CcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCc
Q 045751          282 LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSL  361 (492)
Q Consensus       282 l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L  361 (492)
                                    .....++.+++|++|++++|  ......|..+..+                        ..+ ++|
T Consensus       215 --------------~~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~------------------------~~~-~~L  253 (310)
T 4glp_A          215 --------------VCAALAAAGVQPHSLDLSHN--SLRATVNPSAPRC------------------------MWS-SAL  253 (310)
T ss_dssp             --------------HHHHHHHHTCCCSSEECTTS--CCCCCCCSCCSSC------------------------CCC-TTC
T ss_pred             --------------HHHHHHhcCCCCCEEECCCC--CCCccchhhHHhc------------------------cCc-CcC
Confidence                          11111456777888888887  2222223222222                        112 466


Q ss_pred             eEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          362 THLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       362 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                      ++|++++|.+. ..|..+.  ++|+.|++++|.+++..  . ...+++|+.|++++|
T Consensus       254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C-TTSCCCCSCEECSST
T ss_pred             CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h-hhhCCCccEEECcCC
Confidence            66666666664 3344332  66777777777666431  1 456677777777776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=2.8e-17  Score=160.45  Aligned_cols=217  Identities=12%  Similarity=0.076  Sum_probs=133.8

Q ss_pred             CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCc-cCchhHHhcCCCccE-EecCCCcccchH-HHhhcccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYT-LDMPFSYIHHTA-DVFWEMNKLRHL  264 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~-L~L~~~~l~~lp-~~~~~l~~L~~L  264 (492)
                      +++++|+|++|.|+.+|. .|.++++|++|++++|.+. .+|...|.++++++. +.+++|++..++ ..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            567888888888887774 5788888888888888875 577666677877665 455556777774 447778888888


Q ss_pred             cccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCc-ccceEEeeeccCcchhhHHHHhhcCCCCCeEEeec
Q 045751          265 NFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLP-NLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN  340 (492)
Q Consensus       265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  340 (492)
                      ++++|.+....+..+....++..+++.+   ........+..+. .++.|++++|                         
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-------------------------  164 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-------------------------  164 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-------------------------
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-------------------------
Confidence            8888877543333333333333333321   1111111122222 3444444444                         


Q ss_pred             CCCCCCccEEEeecCCCCCCceEEEEec-ccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751          341 ESKMPRLSKIVLDEYQFPPSLTHLSFSN-TELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML  419 (492)
Q Consensus       341 ~~~~~~L~~L~l~~~~lp~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  419 (492)
                           +++.+.-..... .+|++|.+.+ |.+.......|.++++|+.|++++|.++...    .+.+.+|+.|.+.++.
T Consensus       165 -----~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          165 -----GIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTY  234 (350)
T ss_dssp             -----CCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCT
T ss_pred             -----cccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----hhhhccchHhhhccCC
Confidence                 222221122223 5677777765 4444444456788888888888888776432    2457778888877777


Q ss_pred             CcceEEEccCccccccEEEEee
Q 045751          420 WLEEWTMGTGAMPKLECLIIDP  441 (492)
Q Consensus       420 ~l~~l~~~~~~l~~L~~L~l~~  441 (492)
                      .++.+|. +..+++|+.+++.+
T Consensus       235 ~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          235 NLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCCC-TTTCCSCCEEECSC
T ss_pred             CcCcCCC-chhCcChhhCcCCC
Confidence            7887774 77788888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=2.7e-16  Score=145.97  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGL  268 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~  268 (492)
                      ..++++++++.++.+|..+.  ++++.|++++|.+..++...|.++++|++|++++|.+..++.. +..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45567777777777776554  4677777777777766654447777777777777776665433 66777777777777


Q ss_pred             cccC
Q 045751          269 FTLP  272 (492)
Q Consensus       269 ~~~~  272 (492)
                      |.+.
T Consensus        93 n~l~   96 (251)
T 3m19_A           93 NQLA   96 (251)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            7664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=9.7e-16  Score=145.35  Aligned_cols=167  Identities=20%  Similarity=0.210  Sum_probs=104.3

Q ss_pred             cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      .+++|++|++++|.++.++. +..+++|++|++++|.+..++. + .++++|++|++++|.+..+|. +..+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            45566666666666665543 5666666666666666666655 4 666666666666666666554 666666666666


Q ss_pred             cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      ++|.+.+                       ++. +..+++|+.|++++|.  ...                         
T Consensus       120 ~~n~i~~-----------------------~~~-l~~l~~L~~L~l~~n~--l~~-------------------------  148 (291)
T 1h6t_A          120 EHNGISD-----------------------ING-LVHLPQLESLYLGNNK--ITD-------------------------  148 (291)
T ss_dssp             TTSCCCC-----------------------CGG-GGGCTTCCEEECCSSC--CCC-------------------------
T ss_pred             CCCcCCC-----------------------Chh-hcCCCCCCEEEccCCc--CCc-------------------------
Confidence            6665421                       112 5556666666666651  110                         


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                      +.    .+..+ ++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.  + .+..+++|+.|++++|
T Consensus       149 ~~----~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          149 IT----VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CG----GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEEEEEE
T ss_pred             ch----hhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--h-hhccCCCCCEEECcCC
Confidence            00    34455 778888888888755433  77788888888888777653  2 2567778888888877

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=6.3e-16  Score=143.43  Aligned_cols=170  Identities=19%  Similarity=0.178  Sum_probs=120.7

Q ss_pred             eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751          141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL  219 (492)
Q Consensus       141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l  219 (492)
                      .+++.+..+....++ ..+.++++.|++++|.+..    ..+..|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus        16 ~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CeEEecCCCCccccC-CCCCCCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            345566544444444 3336788888888888762    44556788888888888888888554 45788888888888


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCcc
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCC  296 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~  296 (492)
                      ++|.+..+|...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++  ....
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            88888888877668888888888888888877765 57788888888888887655444566666666666653  2233


Q ss_pred             chhhhCCCcccceEEeeec
Q 045751          297 TPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~~  315 (492)
                      ++..+..+++|+.|++++|
T Consensus       171 ~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSC
T ss_pred             CHHHHhCCCCCCEEEeeCC
Confidence            3333566666666666666

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.63  E-value=5.6e-16  Score=147.01  Aligned_cols=122  Identities=19%  Similarity=0.228  Sum_probs=104.7

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|+.|+++++.+..    .  ..+..+++|++|++++|.++.++. +..+++|++|++++|.+..+|. + ..+++|+
T Consensus        45 l~~L~~L~l~~~~i~~----~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~  115 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK  115 (291)
T ss_dssp             HHTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred             cCcccEEEccCCCccc----C--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence            8899999999998862    2  347889999999999999998877 9999999999999999999876 5 8999999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +|++++|.+..++ .+..+++|+.|++++|.+.+.                       +. +..+++|+.|++++|
T Consensus       116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-----------------------~~-l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-----------------------TV-LSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-----------------------GG-GGGCTTCSEEECCSS
T ss_pred             EEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-----------------------hh-hccCCCCCEEEccCC
Confidence            9999999998885 589999999999999987431                       12 667777888888777

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=3.7e-16  Score=160.82  Aligned_cols=187  Identities=18%  Similarity=0.144  Sum_probs=118.3

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      +|++|++++|.++.+|..+.  ++|++|++++|.++.+| .   .+++|++|++++|.++.+|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            67777777777777776553  67777777777777777 2   46777777777777777766 444  7777777777


Q ss_pred             ccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccE
Q 045751          270 TLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSK  349 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~  349 (492)
                      .+.+ +|.                         .+++|+.|++++|.  .. .+|.                        
T Consensus       131 ~l~~-lp~-------------------------~l~~L~~L~Ls~N~--l~-~lp~------------------------  157 (571)
T 3cvr_A          131 QLTM-LPE-------------------------LPALLEYINADNNQ--LT-MLPE------------------------  157 (571)
T ss_dssp             CCSC-CCC-------------------------CCTTCCEEECCSSC--CS-CCCC------------------------
T ss_pred             cCCC-CCC-------------------------cCccccEEeCCCCc--cC-cCCC------------------------
Confidence            6543 222                         23456666666651  11 1110                        


Q ss_pred             EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc-------cEEeecccCCcc
Q 045751          350 IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL-------KVLHLKSMLWLE  422 (492)
Q Consensus       350 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~  422 (492)
                            .+ ++|++|++++|.+.+ .+. +.  ++|+.|++++|.++..  +. +..  +|       +.|++++| .++
T Consensus       158 ------~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l--p~-~~~--~L~~~~~~L~~L~Ls~N-~l~  220 (571)
T 3cvr_A          158 ------LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL--PA-VPV--RNHHSEETEIFFRCREN-RIT  220 (571)
T ss_dssp             ------CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC--CC-CC----------CCEEEECCSS-CCC
T ss_pred             ------cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch--hh-HHH--hhhcccccceEEecCCC-cce
Confidence                  12 567777777777654 333 44  7777777777776632  22 222  55       88888877 667


Q ss_pred             eEEEccCccccccEEEEeecCCcCccchhccCC
Q 045751          423 EWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSV  455 (492)
Q Consensus       423 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l  455 (492)
                      .+|..+..+++|+.|++++|+..+.+|..+..+
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            777777778888888888887766666655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=1.7e-15  Score=157.57  Aligned_cols=60  Identities=28%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          353 DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       353 ~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                      .+..+ ++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+.   ..+..+++|+.|+|++|
T Consensus       148 ~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          148 VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSE
T ss_pred             hhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCC
Confidence            45566 888999999998865544  88889999999998888753   24677889999999887

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=1e-15  Score=159.24  Aligned_cols=171  Identities=19%  Similarity=0.244  Sum_probs=101.0

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|+.|++.++.+..    .  ..+..+++|+.|+|++|.++.++. +..+++|++|+|++|.+..+| .+ ..+++|+
T Consensus        42 L~~L~~L~l~~n~i~~----l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~  112 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLK  112 (605)
T ss_dssp             HTTCCCCBCTTCCCCC----C--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCC
T ss_pred             CCCCCEEECcCCCCCC----C--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCC
Confidence            6677777777766651    1  246667777777777777776655 667777777777777777665 34 6777777


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN  319 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  319 (492)
                      .|+|++|.+..++. +..+++|+.|+|++|.+.+.                       +. +..+++|+.|++++|  ..
T Consensus       113 ~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-----------------------~~-l~~l~~L~~L~Ls~N--~l  165 (605)
T 1m9s_A          113 SLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-----------------------TV-LSRLTKLDTLSLEDN--QI  165 (605)
T ss_dssp             EEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC-----------------------GG-GGSCTTCSEEECCSS--CC
T ss_pred             EEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc-----------------------hh-hcccCCCCEEECcCC--cC
Confidence            77777776666643 66777777777777765321                       22 555666666666665  22


Q ss_pred             hhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751          320 QSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED  374 (492)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~  374 (492)
                      ....|  +..+++|+.|+|++    ..+..+. .+..+ ++|+.|+|++|.+.+.
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~----N~i~~l~-~l~~l-~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSK----NHISDLR-ALAGL-KNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCS----SCCCBCG-GGTTC-TTCSEEECCSEEEECC
T ss_pred             CCchh--hccCCCCCEEECcC----CCCCCCh-HHccC-CCCCEEEccCCcCcCC
Confidence            22222  45555555555542    1222211 34445 5566666666555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=2.4e-15  Score=134.04  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             ccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCccccee
Q 045751          209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFI  288 (492)
Q Consensus       209 ~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l  288 (492)
                      ..+++|++|++++|.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..          
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~----------  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN----------  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC----------
T ss_pred             hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh----------
Confidence            44556666666666666655 34 66666666666666555554 3566666666666666554333322          


Q ss_pred             ecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEec
Q 045751          289 SALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSN  368 (492)
Q Consensus       289 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~  368 (492)
                                  ++.+++|+.|++++|  ......+..+..+++|+.|++++   +..+..+. .+..+ ++|++|++++
T Consensus       108 ------------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~---n~~i~~~~-~l~~l-~~L~~L~l~~  168 (197)
T 4ezg_A          108 ------------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSY---NGAITDIM-PLKTL-PELKSLNIQF  168 (197)
T ss_dssp             ------------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCS---CTBCCCCG-GGGGC-SSCCEEECTT
T ss_pred             ------------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccC---CCCccccH-hhcCC-CCCCEEECCC
Confidence                        444555555555555  33334445555554444444442   11111111 23344 5555555555


Q ss_pred             ccCCCCCcccccCCCccCeEEEecccc
Q 045751          369 TELMEDPMPTLEKLPLLQVLKLKKNSY  395 (492)
Q Consensus       369 ~~l~~~~~~~l~~l~~L~~L~l~~~~~  395 (492)
                      |.+.+..  .+..+++|+.|++++|.+
T Consensus       169 n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          169 DGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             BCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             CCCcChH--HhccCCCCCEEEeeCccc
Confidence            5553321  455556666666665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=7.7e-16  Score=138.54  Aligned_cols=176  Identities=18%  Similarity=0.170  Sum_probs=126.0

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccC
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNI  221 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~  221 (492)
                      .+....+....++ ....++|+.|+++++.+.    ......|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus        11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEECCSSCCSSCC-SCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEecCCCccCCC-CCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            3344433344443 233678899999988875    2455567888999999999998887764 467889999999999


Q ss_pred             CCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhh
Q 045751          222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDI  300 (492)
Q Consensus       222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  300 (492)
                      |.+..+|...|.++++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.+++++..    - 
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~-  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----W-  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC----B-
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC----e-
Confidence            999988877668899999999999988887765 6788999999999988865555456667777777776431    1 


Q ss_pred             hCCCcccceEEeeeccCcchhhHHHHhhcC
Q 045751          301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKL  330 (492)
Q Consensus       301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  330 (492)
                      .+.+++|+.|+++.|  ...+.+|..++.+
T Consensus       161 ~~~~~~l~~L~~~~n--~~~g~ip~~~~~l  188 (208)
T 2o6s_A          161 DCTCPGIRYLSEWIN--KHSGVVRNSAGSV  188 (208)
T ss_dssp             CCCTTTTHHHHHHHH--HCTTTBBCTTSSB
T ss_pred             ecCCCCHHHHHHHHH--hCCceeeccCccc
Confidence            345566777777666  4555555544433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=1.4e-15  Score=136.76  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      ++|++|++++|.++.++. .+..+++|++|++++|.+..+|...|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            456666666666665443 345666666666666666666655446666666666666666555543 456666666666


Q ss_pred             cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      ++|.+.+..+                      ..+..+++|+.|++++|  ......+..+..+++|+.|+++++.    
T Consensus       108 ~~N~l~~~~~----------------------~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~----  159 (208)
T 2o6s_A          108 NTNQLQSLPD----------------------GVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNP----  159 (208)
T ss_dssp             CSSCCCCCCT----------------------TTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred             CCCcCcccCH----------------------hHhccCCcCCEEECCCC--ccceeCHHHhccCCCccEEEecCCC----
Confidence            6665532222                      22556666777777766  2222222224444444444444210    


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCC
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLP  383 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~  383 (492)
                            +...+ ++|+.|+++.|.+++..|..++.++
T Consensus       160 ------~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          160 ------WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ------BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ------eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence                  22233 4555555555555555555444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=7.7e-15  Score=151.04  Aligned_cols=175  Identities=16%  Similarity=0.100  Sum_probs=135.9

Q ss_pred             ccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751          213 FLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH  292 (492)
Q Consensus       213 ~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~  292 (492)
                      +|+.|++++|.+..+|..+   .++|++|++++|.++.+|   ..+++|++|++++|.+.+ +|. +             
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-------------  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-L-------------  118 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-C-------------
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-h-------------
Confidence            8999999999999998876   378999999999888888   567899999999988754 443 2             


Q ss_pred             CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751          293 PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM  372 (492)
Q Consensus       293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~  372 (492)
                               ..  +|+.|++++|.  ... +|.                              .+ ++|+.|++++|.++
T Consensus       119 ---------~~--~L~~L~Ls~N~--l~~-lp~------------------------------~l-~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          119 ---------PA--SLKHLDVDNNQ--LTM-LPE------------------------------LP-ALLEYINADNNQLT  153 (571)
T ss_dssp             ---------CT--TCCEEECCSSC--CSC-CCC------------------------------CC-TTCCEEECCSSCCS
T ss_pred             ---------hc--CCCEEECCCCc--CCC-CCC------------------------------cC-ccccEEeCCCCccC
Confidence                     11  67788888872  111 111                              13 78899999999986


Q ss_pred             CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccc-------cEEEEeecCCc
Q 045751          373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKL-------ECLIIDPCAYL  445 (492)
Q Consensus       373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L-------~~L~l~~c~~l  445 (492)
                      + .+.   .+++|+.|++++|.+++.  +. +.  ++|+.|++++| .++.+|. +..  +|       +.|++++|...
T Consensus       154 ~-lp~---~l~~L~~L~Ls~N~L~~l--p~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          154 M-LPE---LPTSLEVLSVRNNQLTFL--PE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSCC--CC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCC
T ss_pred             c-CCC---cCCCcCEEECCCCCCCCc--ch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcce
Confidence            5 333   678999999999998773  33 33  89999999998 7888887 543  77       99999999755


Q ss_pred             CccchhccCCCCCcEEEecCCC
Q 045751          446 KRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       446 ~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                       .+|..+..+++|+.|++++|+
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSS
T ss_pred             -ecCHHHhcCCCCCEEEeeCCc
Confidence             799988889999999999997

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=3.1e-15  Score=139.61  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=43.4

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      ++..++++++.++.++ .+..+++|++|++++|.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence            3444455555555444 3455555666666666555555 33 555666666666665555554 555556666666555


Q ss_pred             cc
Q 045751          270 TL  271 (492)
Q Consensus       270 ~~  271 (492)
                      .+
T Consensus        96 ~l   97 (263)
T 1xeu_A           96 RL   97 (263)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=9.5e-17  Score=165.95  Aligned_cols=206  Identities=16%  Similarity=0.131  Sum_probs=123.8

Q ss_pred             hcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEE-
Q 045751          233 SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLR-  311 (492)
Q Consensus       233 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~-  311 (492)
                      ..+++|+.|++++|.++.+|..++++++|+.|++++|.....+|..+      ..++   ....++..++.+++|+.|+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~~---~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM------RALD---PLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHHC---TGGGHHHHHHHHHHHHHHCG
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH------Hhcc---cccCCHHHHHHHHhcccCcc
Confidence            45666777777777777777777777777777765543111111000      0000   0111222244444444444 


Q ss_pred             eeeccC----------cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccC
Q 045751          312 IHGDLS----------NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEK  381 (492)
Q Consensus       312 l~~~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~  381 (492)
                      ++.+.-          .....++.     ..|+.|++++    ..++.++ .++.+ ++|+.|++++|.+. ..|..+++
T Consensus       417 l~~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~----n~l~~lp-~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          417 MRAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAH----KDLTVLC-HLEQL-LLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTT----SCCSSCC-CGGGG-TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             hhhcccchhhhhhhhcccccccCc-----cCceEEEecC----CCCCCCc-Ccccc-ccCcEeecCccccc-ccchhhhc
Confidence            222200          01111221     2477788774    2344333 36667 78888888888876 66778888


Q ss_pred             CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE--EEccCccccccEEEEeecCCcCccch---hccCCC
Q 045751          382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW--TMGTGAMPKLECLIIDPCAYLKRLPK---QLWSVK  456 (492)
Q Consensus       382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~---~l~~l~  456 (492)
                      +++|+.|++++|.+++  ++ .++.+++|+.|++++| .++.+  |..++.+++|+.|++++|+.....|.   .+..++
T Consensus       485 l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          485 LRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             CTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             CCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            8888888888888876  24 5778888888888887 66666  67788888888888888875543221   234477


Q ss_pred             CCcEEEe
Q 045751          457 RFKKLEL  463 (492)
Q Consensus       457 ~L~~L~l  463 (492)
                      +|+.|++
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            8887753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=2.2e-14  Score=127.80  Aligned_cols=127  Identities=13%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCcc-CchhHHhcCCCccEEecCCCcccc-hHHHhhcccccc
Q 045751          185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKS-LPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR  262 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~  262 (492)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..+ +.+++|++|++++|.+.. .|..+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            444444444444444433332 34444444444444444442 33333 444444444444444432 333444444444


Q ss_pred             cccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeec
Q 045751          263 HLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       263 ~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +|++++|...+.+| .+..+++|+.+++++ ....++. +..+++|+.|++++|
T Consensus       140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~-l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT-GGGCSSCCEEEECBC
T ss_pred             EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH-hccCCCCCEEEeeCc
Confidence            44444444112222 222233333333321 1111122 566666777777666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=2e-14  Score=131.24  Aligned_cols=126  Identities=19%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccC
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNI  221 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~  221 (492)
                      .+....+....++ ..+.++|+.|++++|.+.    ...+..|.++++|++|+|++|.++.+| ..+..+++|++|++++
T Consensus        23 ~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           23 TVDCRSKRHASVP-AGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             EEECTTSCCSSCC-SCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeEccCCCcCccC-CCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            3444434444444 233688899999988876    244567888899999999999988777 4468888999999999


Q ss_pred             CCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCC
Q 045751          222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA  273 (492)
Q Consensus       222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~  273 (492)
                      |.++.+|...|..+++|++|++++|.+..+|..+..+++|++|++++|.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence            9999888776688999999999999888888888888999999998888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=3.4e-15  Score=159.11  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY  216 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~  216 (492)
                      ..+++++++..+.+...+...+ ...|+.+.+.............+..+..++.|++|+|++|.+..+|..+..+++|++
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            3457777776455554432222 333333333322111000125567788889999999999998888888888899999


Q ss_pred             EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751          217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL  291 (492)
Q Consensus       217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~  291 (492)
                      |+|++|.|+.+|..+ +++++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+++
T Consensus       252 L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          252 LYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             EEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            999999999888887 8999999999999988888888889999999999988874 666665555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=2.1e-14  Score=130.24  Aligned_cols=151  Identities=18%  Similarity=0.256  Sum_probs=91.4

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFT  270 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~  270 (492)
                      +.++++++.++.+|..+.  ++|+.|++++|.|..++...|..+++|+.|++++|.+..+ |..+..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456777777777776554  5777778877777777665447777777777777777666 5557777777777777776


Q ss_pred             cCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEE
Q 045751          271 LPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKI  350 (492)
Q Consensus       271 ~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L  350 (492)
                      +. .+|.                     ..+..+++|+.|++++|.  .....+.                         
T Consensus        92 l~-~l~~---------------------~~f~~l~~L~~L~L~~N~--l~~~~~~-------------------------  122 (220)
T 2v9t_B           92 IT-ELPK---------------------SLFEGLFSLQLLLLNANK--INCLRVD-------------------------  122 (220)
T ss_dssp             CC-CCCT---------------------TTTTTCTTCCEEECCSSC--CCCCCTT-------------------------
T ss_pred             CC-ccCH---------------------hHccCCCCCCEEECCCCC--CCEeCHH-------------------------
Confidence            53 2221                     114455566666666651  1111111                         


Q ss_pred             EeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccC
Q 045751          351 VLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYL  396 (492)
Q Consensus       351 ~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  396 (492)
                        .+..+ ++|++|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus       123 --~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          123 --AFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             --TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             --HcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence              23333 55666666666665555555666666666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=2.7e-14  Score=129.46  Aligned_cols=140  Identities=17%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCC
Q 045751          144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIP  222 (492)
Q Consensus       144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~  222 (492)
                      +....+....++ ..+.++++.|++++|.+.    ...+..|..+++|++|+|++|.++.+ |..|..+++|++|++++|
T Consensus        16 v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           16 VDCRGKGLTEIP-TNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EECTTSCCSSCC-SSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEcCCCCcCcCC-CccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            344433344443 223567888888888775    24455677888888888888888744 677888888888888888


Q ss_pred             CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCccccee
Q 045751          223 SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFI  288 (492)
Q Consensus       223 ~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l  288 (492)
                      .++.+|..+|..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            888888777678888888888888777663 457778888888888887754433333333333333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.50  E-value=3.4e-14  Score=128.80  Aligned_cols=134  Identities=15%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccC
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNI  221 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~  221 (492)
                      .+.+..+....++ ..+.+.++.|++++|.+..   ......|.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        15 ~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555544444443 2234555667777666541   011234566677777777777666444 3566667777777777


Q ss_pred             CCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCcccc
Q 045751          222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCG  280 (492)
Q Consensus       222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~  280 (492)
                      |.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|..+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            777766665446677777777777766555 34466666677777766666544444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=3e-16  Score=162.20  Aligned_cols=203  Identities=18%  Similarity=0.170  Sum_probs=136.2

Q ss_pred             ccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc--------------ccchHHHhhccccccccc-ccccccCC
Q 045751          209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY--------------IHHTADVFWEMNKLRHLN-FGLFTLPA  273 (492)
Q Consensus       209 ~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~--------------l~~lp~~~~~l~~L~~L~-L~~~~~~~  273 (492)
                      ..+++|+.|++++|.++.+|..+ +++++|+.|++++|.              ....|..++++++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            56788899999999999999998 999999999987763              234456677888888887 555432  


Q ss_pred             CCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEee
Q 045751          274 YPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLD  353 (492)
Q Consensus       274 ~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~  353 (492)
                               .+|..+.+.+  ..+.. +. ...|+.|++++|   ....+|. ++.+++|+.|++++    ..++.++-.
T Consensus       423 ---------~~L~~l~l~~--n~i~~-l~-~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~----N~l~~lp~~  481 (567)
T 1dce_A          423 ---------DDLRSKFLLE--NSVLK-ME-YADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSH----NRLRALPPA  481 (567)
T ss_dssp             ---------HHHHHHHHHH--HHHHH-HH-HTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCS----SCCCCCCGG
T ss_pred             ---------chhhhhhhhc--ccccc-cC-ccCceEEEecCC---CCCCCcC-ccccccCcEeecCc----ccccccchh
Confidence                     1222222210  00111 11 124677777776   2233454 77777788888774    344444335


Q ss_pred             cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc----C
Q 045751          354 EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT----G  429 (492)
Q Consensus       354 ~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~  429 (492)
                      ++.+ ++|++|+|++|.+++ .| .++++++|+.|++++|.+++...+..++.+++|+.|++++| .++.+|...    .
T Consensus       482 ~~~l-~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~  557 (567)
T 1dce_A          482 LAAL-RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE  557 (567)
T ss_dssp             GGGC-TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred             hhcC-CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence            6777 888888888888865 44 78888999999999888876532556778889999999988 566555433    2


Q ss_pred             ccccccEEEE
Q 045751          430 AMPKLECLII  439 (492)
Q Consensus       430 ~l~~L~~L~l  439 (492)
                      .+|+|+.|++
T Consensus       558 ~lp~L~~L~l  567 (567)
T 1dce_A          558 MLPSVSSILT  567 (567)
T ss_dssp             HCTTCSEEEC
T ss_pred             HCcccCccCC
Confidence            4788888753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=6.4e-14  Score=127.88  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             EEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccccc
Q 045751          193 VLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       193 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~  271 (492)
                      .++.+++.++.+|..+.  ++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            45566666666665443  5666666666666655443336666666666666666666533 45666666666666655


Q ss_pred             C
Q 045751          272 P  272 (492)
Q Consensus       272 ~  272 (492)
                      .
T Consensus       101 ~  101 (229)
T 3e6j_A          101 T  101 (229)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.5e-14  Score=141.58  Aligned_cols=175  Identities=21%  Similarity=0.304  Sum_probs=84.0

Q ss_pred             EEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHh-cCCCccEEecCCCcccchHH-Hhhcccccccccccccc
Q 045751          193 VLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLS-SISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFT  270 (492)
Q Consensus       193 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~-~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~  270 (492)
                      +++++++.++.+|..+.  ..++.|++++|.++.++...|. ++++|++|+|++|.+..++. .+..+++|++|+|++|.
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            45555555555554332  2355555555555555544434 55555555555555555542 35555555555555555


Q ss_pred             cCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751          271 LPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS  348 (492)
Q Consensus       271 ~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~  348 (492)
                      +....+..+..+++|+.|++++  .....+..+..+++|+.|++++|.   ...+|..+..                   
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~-------------------  157 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---ISRFPVELIK-------------------  157 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCSCCGGGTC-------------------
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc---CCeeCHHHhc-------------------
Confidence            4332222233333333333321  111112225566666666666662   1112211100                   


Q ss_pred             EEEeecCCCCCCceEEEEecccCCCCCcccccCCCc--cCeEEEeccccC
Q 045751          349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPL--LQVLKLKKNSYL  396 (492)
Q Consensus       349 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~l~~~~~~  396 (492)
                          .+..+ ++|+.|+|++|.+....+..+..++.  ++.|++.+|.+.
T Consensus       158 ----~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          158 ----DGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             --------C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ----CcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                01234 66777777777766555555666665  366777766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=1.5e-13  Score=132.76  Aligned_cols=280  Identities=13%  Similarity=0.028  Sum_probs=162.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhcc-CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhc----
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKM-FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS----  234 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~----  234 (492)
                      .++++.|.+.++-..     .....+.. +++|++|||++|.+......-+.++.++.+.+..+   .+|...|.+    
T Consensus        24 ~~~l~~L~l~g~i~~-----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA-----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEECH-----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred             hCceeEEEEeccccH-----HHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence            567788888765322     22233444 78889999988887611111112222344444443   455555566    


Q ss_pred             ----CCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCC------CccchhhhCC
Q 045751          235 ----ISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP------RCCTPDILGR  303 (492)
Q Consensus       235 ----l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~------~~~~~~~l~~  303 (492)
                          +++|+.+++.. .++.++.. |..+++|+.+++++|.+....+..+..+.++..+.....      .......+..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                77777777766 56666543 666777777777766655444444555555554443320      0011111334


Q ss_pred             Ccccc-eEEeeeccCcchhhHHHHh----hcCCCCCeEEeecCCCCCCccEEEe-ec-CCCCCCceEEEEecccCCCCCc
Q 045751          304 LPNLR-KLRIHGDLSNNQSLLSKSL----YKLSSLESLKLVNESKMPRLSKIVL-DE-YQFPPSLTHLSFSNTELMEDPM  376 (492)
Q Consensus       304 l~~L~-~L~l~~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~L~~L~l-~~-~~lp~~L~~L~L~~~~l~~~~~  376 (492)
                      +..|+ .+.+...     ..++..+    ....++..+.+.+   .  +..-.. .+ ..+ ++|++|++.+|.+.....
T Consensus       175 ~~~L~~~i~~~~~-----~~l~~~~~~~~~~~~~~~~l~~~~---~--l~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~  243 (329)
T 3sb4_A          175 GEPLETTIQVGAM-----GKLEDEIMKAGLQPRDINFLTIEG---K--LDNADFKLIRDYM-PNLVSLDISKTNATTIPD  243 (329)
T ss_dssp             SCCCEEEEEECTT-----CCHHHHHHHTTCCGGGCSEEEEEE---C--CCHHHHHHHHHHC-TTCCEEECTTBCCCEECT
T ss_pred             ccccceeEEecCC-----CcHHHHHhhcccCccccceEEEee---e--ecHHHHHHHHHhc-CCCeEEECCCCCcceecH
Confidence            45555 3444332     1222222    1234455555542   0  000000 01 125 788888888888766667


Q ss_pred             ccccCCCccCeEEEeccccCCCcccccCCCCcccc-EEeecccCCcceEE-EccCccccccEEEEeecCCcCccchhccC
Q 045751          377 PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLK-VLHLKSMLWLEEWT-MGTGAMPKLECLIIDPCAYLKRLPKQLWS  454 (492)
Q Consensus       377 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~  454 (492)
                      ..|.++++|+.+++.+| +.. .....+.++++|+ .+.+.+  .++.++ ..+..+++|+.+++.++....--+..+.+
T Consensus       244 ~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             TTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             hhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence            78889999999999876 432 2355578888998 999987  677775 45888999999998877644333347889


Q ss_pred             CCCCcEEEe
Q 045751          455 VKRFKKLEL  463 (492)
Q Consensus       455 l~~L~~L~l  463 (492)
                      +++|+.++.
T Consensus       320 ~~~L~~ly~  328 (329)
T 3sb4_A          320 GVPSKLIYK  328 (329)
T ss_dssp             TCCCCEEEC
T ss_pred             Ccchhhhcc
Confidence            999998863

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.47  E-value=4.8e-15  Score=153.12  Aligned_cols=113  Identities=17%  Similarity=0.100  Sum_probs=87.7

Q ss_pred             hHHHHHHhhcccCChhhHHHHHhhhcccch-----------------HHHHHHHHhhhcccccccccce-----------
Q 045751            3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-----------------EIVTSLLRDYECEIAGHLVNII-----------   54 (492)
Q Consensus         3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-----------------~i~~~l~~sy~~~l~~~~k~~~-----------   54 (492)
                      .+.++++|+++|+|+|||++++|+.|+.+.                 ++.+++.+||+ .+|.++|.||           
T Consensus       315 ~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~-~L~~~lk~~f~~Ls~~er~l~  393 (549)
T 2a5y_B          315 EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYK-SLAMALQRCVEVLSDEDRSAL  393 (549)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSS-SHHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccc-cccHHHHHHHhccchhhhhHh
Confidence            357899999999999999999999998763                 23345577888 4787777664           


Q ss_pred             ----------eecHHHHHHHHHHh--CCCC--C-C--hHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHH
Q 045751           55 ----------VEEEEMIYQLWIAE--GFIP--D-N--NEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALI  117 (492)
Q Consensus        55 ----------~~~~~~Li~~wia~--gf~~--~-~--~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~  117 (492)
                                .|+    +.+|+|+  ||+.  . +  .+++++ |+++|+++||++....+   ....|+|||++|++|+
T Consensus       394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~  465 (549)
T 2a5y_B          394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLK  465 (549)
T ss_dssp             TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHH
T ss_pred             hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHH
Confidence                      334    8999999  9997  3 3  788888 99999999999987643   3357999999999999


Q ss_pred             HHhhccC
Q 045751          118 QVALAGE  124 (492)
Q Consensus       118 ~~~~~~~  124 (492)
                      +++.+++
T Consensus       466 ~~~~~~~  472 (549)
T 2a5y_B          466 HVVDAQT  472 (549)
T ss_dssp             TTSCTHH
T ss_pred             HHHHHHH
Confidence            8776554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=7.8e-14  Score=126.46  Aligned_cols=101  Identities=12%  Similarity=0.162  Sum_probs=56.4

Q ss_pred             cEEEEEecCCcCCCCc--hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751          190 FLRVLDLGSLVLSQLP--SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      .+++|++++|.++.++  ..+..+++|++|++++|.++.++...|.++++|++|++++|.+..++.. +..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            3456666666666442  2355666666666666666655553336666666666666666555433 556666666666


Q ss_pred             cccccCCCCCccccCCcccceeec
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISA  290 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~  290 (492)
                      ++|.+.+..|..+..+++|+.|++
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCcCCeECHhHcCCCccCCEEEC
Confidence            666655444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=1.2e-13  Score=128.83  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751          185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL  264 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L  264 (492)
                      +..+++|++|++++|.++.++ .++.+++|++|++++|.+..++. + ..+++|++|++++|.++.+|. +.. ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNG-IPS-ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTT-CCC-SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCc-ccc-CcccEE
Confidence            344455555555555555444 34555555555555555555554 3 555555555555555555443 222 555555


Q ss_pred             ccccccc
Q 045751          265 NFGLFTL  271 (492)
Q Consensus       265 ~L~~~~~  271 (492)
                      ++++|.+
T Consensus       112 ~L~~N~l  118 (263)
T 1xeu_A          112 FLDNNEL  118 (263)
T ss_dssp             ECCSSCC
T ss_pred             EccCCcc
Confidence            5555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=7.8e-14  Score=118.17  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCcc-CchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKS-LPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~~l~~L  238 (492)
                      .++++.|++++|.+..   ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ ..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred             CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence            3556666666665430   12233456666666666666666655 556666666666666666665 44443 566666


Q ss_pred             cEEecCCCcccchH--HHhhcccccccccccccccC
Q 045751          239 YTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       239 ~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~  272 (492)
                      ++|++++|.++.+|  ..++.+++|++|++++|.+.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            66666666666554  44666666666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=1.4e-13  Score=116.61  Aligned_cols=129  Identities=17%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             ccCCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc-hHHHhhcccccc
Q 045751          186 KMFKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR  262 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~  262 (492)
                      ...++|+.|++++|.++  .+|..++.+++|++|++++|.+..+ ..+ +.+++|++|++++|.+.. +|..+..+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            44578999999999998  8898889999999999999999988 555 899999999999999887 888888899999


Q ss_pred             cccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH---HHhhcCCCCCeEEee
Q 045751          263 HLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS---KSLYKLSSLESLKLV  339 (492)
Q Consensus       263 ~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~  339 (492)
                      +|++++|.+.+. |                   .+.. ++.+++|+.|++++|  ......+   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~-~-------------------~~~~-~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDL-S-------------------TIEP-LKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSH-H-------------------HHGG-GGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCCh-H-------------------HHHH-HhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCcccccCC
Confidence            999999987431 1                   1122 677788888888887  2333222   467888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=1.9e-13  Score=133.82  Aligned_cols=169  Identities=17%  Similarity=0.120  Sum_probs=123.3

Q ss_pred             eEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751          142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL  219 (492)
Q Consensus       142 r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l  219 (492)
                      +.+.+..+....++ ..+.+.++.|++++|.+.    ......+. ++++|++|+|++|.++.++ ..|..+++|++|++
T Consensus        21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            34555544455544 334667889999998876    34455566 8899999999999988665 56888999999999


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccc----cCCcccceeecCC--
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDC----GSLENLNFISALH--  292 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~----~~l~~L~~l~~~~--  292 (492)
                      ++|.+..++...|..+++|++|+|++|.+..+ |..+..+++|++|+|++|.+.. +|..+    ..+++|+.|++++  
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence            99999988877668999999999999988777 4568889999999999998854 44443    4577888888764  


Q ss_pred             CCccchhhhCCCcc--cceEEeeecc
Q 045751          293 PRCCTPDILGRLPN--LRKLRIHGDL  316 (492)
Q Consensus       293 ~~~~~~~~l~~l~~--L~~L~l~~~~  316 (492)
                      ....+...+..++.  ++.|++.+|.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCC
Confidence            22333333566665  3678887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.40  E-value=5.9e-13  Score=115.19  Aligned_cols=126  Identities=18%  Similarity=0.044  Sum_probs=95.0

Q ss_pred             CCCeeEEEEecCCCC--ccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhhcccc
Q 045751          138 RKMIKRLTANVNLSE--LDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGIENLF  212 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~--~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~  212 (492)
                      +.+++++.+..+.+.  .++ ..+  +++|+.|++++|.+..    .  ..+..+++|++|++++|.++. +|..+..++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            457888888766655  343 333  7888888888887752    2  667788888888888888875 677677788


Q ss_pred             ccCEEEccCCCCccCc--hhHHhcCCCccEEecCCCcccchHH----Hhhccccccccccccccc
Q 045751          213 FLRYLKLNIPSLKSLP--SSFLSSISNLYTLDMPFSYIHHTAD----VFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       213 ~L~~L~l~~~~i~~lp--~~~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~L~~~~~  271 (492)
                      +|++|++++|.+..+|  ..+ ..+++|++|++++|.+..+|.    .+..+++|++|++++|..
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            8888888888888776  455 788888888888887777765    577888888888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=6.2e-13  Score=115.02  Aligned_cols=82  Identities=21%  Similarity=0.188  Sum_probs=44.1

Q ss_pred             CCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc-hHHHhhcccccccc
Q 045751          188 FKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHL  264 (492)
Q Consensus       188 ~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L  264 (492)
                      .++|++|++++|.++  .+|..+..+++|++|++++|.+..+ ..+ ..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            345555555555554  5555555555555555555555544 333 555555555555555544 44444455555555


Q ss_pred             ccccccc
Q 045751          265 NFGLFTL  271 (492)
Q Consensus       265 ~L~~~~~  271 (492)
                      ++++|.+
T Consensus       101 ~Ls~N~l  107 (168)
T 2ell_A          101 NLSGNKL  107 (168)
T ss_dssp             ECBSSSC
T ss_pred             eccCCcc
Confidence            5555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=2.8e-13  Score=118.24  Aligned_cols=131  Identities=13%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +++|+.|++++|.+..    . +......++|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+|..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~----i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV----I-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCS----C-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCch----h-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            6677777777776651    1 22223334778888888777765 5577777888888888887777766667778888


Q ss_pred             EEecCCCcccchHH--HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          240 TLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       240 ~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +|++++|.++.+|.  .+..+++|++|++++|.+. .+|..                  ....+..+++|+.|+++.|
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~------------------~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHY------------------RLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTH------------------HHHHHHHCTTCSEETTEEC
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhH------------------HHHHHHHCCccceeCCCcC
Confidence            88888887777775  5777777888877777653 22221                  0011566777778877777

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=2.9e-14  Score=151.97  Aligned_cols=159  Identities=13%  Similarity=0.068  Sum_probs=96.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEE-----ecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLD-----LGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS  234 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~-----L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~  234 (492)
                      .++++.|.+.++...     ..+..+.....|+.+.     +..+.+...+..+..+.+|+.|+|++|.+..+|..+ .+
T Consensus       172 ~~~~~~l~L~~n~~~-----~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~  245 (727)
T 4b8c_D          172 TPLTPKIELFANGKD-----EANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GG
T ss_pred             CCccceEEeeCCCCC-----cchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cC
Confidence            567888888877765     2222222233333333     333444455677889999999999999999999999 79


Q ss_pred             CCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEe
Q 045751          235 ISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRI  312 (492)
Q Consensus       235 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l  312 (492)
                      +++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++.+++|+.|++++  ....+.. ++.+++|+.|++
T Consensus       246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L  323 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGV  323 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEEC
T ss_pred             CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeC
Confidence            99999999999999999999999999999999999987 7888888888888888874  3344445 788888888888


Q ss_pred             eeccCcchhhHHHHhh
Q 045751          313 HGDLSNNQSLLSKSLY  328 (492)
Q Consensus       313 ~~~~~~~~~~~~~~l~  328 (492)
                      ++|  ...+..|..+.
T Consensus       324 ~~N--~l~~~~p~~~~  337 (727)
T 4b8c_D          324 EGN--PLEKQFLKILT  337 (727)
T ss_dssp             TTS--CCCSHHHHHHH
T ss_pred             CCC--ccCCCChHHHh
Confidence            887  45556666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=1.2e-13  Score=123.02  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             HHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccc
Q 045751          182 EKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL  261 (492)
Q Consensus       182 ~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L  261 (492)
                      +..+.++++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+ ..+++|++|++++|.+..+| .+..+++|
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence            447778888888888888888877 7888888888888888888888766 77888888888888888877 58888888


Q ss_pred             ccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH----------HHhhcCC
Q 045751          262 RHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS----------KSLYKLS  331 (492)
Q Consensus       262 ~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~  331 (492)
                      ++|++++|.+... +                   .+.. +..+++|+.|++++|  ......|          ..+..++
T Consensus       118 ~~L~l~~N~i~~~-~-------------------~~~~-l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~~l~  174 (198)
T 1ds9_A          118 RVLYMSNNKITNW-G-------------------EIDK-LAALDKLEDLLLAGN--PLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             SEEEESEEECCCH-H-------------------HHHH-HTTTTTCSEEEECSC--HHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred             CEEECCCCcCCch-h-------------------HHHH-HhcCCCCCEEEecCC--ccccccccccchHHHHHHHHHhCC
Confidence            8888888876321 0                   1123 777888888888887  3333332          2366677


Q ss_pred             CCCeEE
Q 045751          332 SLESLK  337 (492)
Q Consensus       332 ~L~~L~  337 (492)
                      +|+.|+
T Consensus       175 ~L~~Ld  180 (198)
T 1ds9_A          175 NLKKLD  180 (198)
T ss_dssp             SCSEEC
T ss_pred             CcEEEC
Confidence            776665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=1.9e-12  Score=112.90  Aligned_cols=127  Identities=15%  Similarity=0.092  Sum_probs=109.0

Q ss_pred             CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhh-ccccc
Q 045751          137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGI-ENLFF  213 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~  213 (492)
                      ...+++.+.+..+.+..++ ...  .++|+.|++++|.+..    .  ..+..+++|++|++++|.++.+|..+ ..+++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~----~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK----L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE----E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             CcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc----c--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3568899999977777663 222  5699999999999862    2  67899999999999999999887554 89999


Q ss_pred             cCEEEccCCCCccCch--hHHhcCCCccEEecCCCcccchHHH----hhccccccccccccccc
Q 045751          214 LRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFSYIHHTADV----FWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~L~~~~~  271 (492)
                      |++|++++|.+..+|.  .+ ..+++|++|++++|.+..+|..    +..+++|+.|+++.|..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999999999987  66 8999999999999999888875    89999999999998865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=6.5e-12  Score=111.20  Aligned_cols=84  Identities=18%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFG  267 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~  267 (492)
                      ++|++|++++|.++.+|..+..+++|++|++++|.|+.++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            34555666666555555555555566666666665555554444555666666666655555543 35555555555555


Q ss_pred             ccccC
Q 045751          268 LFTLP  272 (492)
Q Consensus       268 ~~~~~  272 (492)
                      +|.+.
T Consensus       111 ~N~l~  115 (193)
T 2wfh_A          111 GNDIS  115 (193)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            55543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=3.6e-12  Score=112.77  Aligned_cols=122  Identities=17%  Similarity=0.268  Sum_probs=55.2

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchh-HHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSS-FLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~  269 (492)
                      ++++++++.++.+|..+..  +|++|++++|.+..++.. +|+.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            3445555555555543322  455555555555544432 125555555555555555444 334555555555555555


Q ss_pred             ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751          270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      .+.+..|..+..+++|+.|++++  .....+..+..+++|+.|++++|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            54433333333333333333332  11111111444555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=3.2e-12  Score=113.17  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .++|++|++++|.+.     ..+..|.++++|++|+|++|.++.++ ..|..+++|++|++++|.+..++...|..+++|
T Consensus        30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence            445555555555543     12234555555555555555555433 335555555555555555555544433555555


Q ss_pred             cEEecCCCcccchHHH-hhccccccccccccccc
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~  271 (492)
                      ++|++++|.+..+|.. +..+++|+.|++++|.+
T Consensus       105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5555555555555432 44455555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=2.1e-12  Score=114.36  Aligned_cols=125  Identities=18%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHH-HHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEcc
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCE-KICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLN  220 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~  220 (492)
                      .+.+..+....++ ..+.+++++|++++|.+..    ..+ ..|..+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus        12 ~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           12 TVDCTGRGLKEIP-RDIPLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCSSCC-SCCCTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            3444433343333 2223355555555555431    111 1245555555555555555533 4455555555555555


Q ss_pred             CCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccC
Q 045751          221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~  272 (492)
                      +|.++.++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5555544444335555555555555555443 334555555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=3.8e-12  Score=111.09  Aligned_cols=127  Identities=17%  Similarity=0.139  Sum_probs=88.0

Q ss_pred             EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccC
Q 045751          143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNI  221 (492)
Q Consensus       143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~  221 (492)
                      .+.+..+....++ ..+.++|++|++++|.+.    ......+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus        11 ~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           11 EIRCNSKGLTSVP-TGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEECCSSCCSSCC-TTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEecCCCCccCC-CCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4444434444443 223567888888877765    2444556777888888888888776664 357778888888888


Q ss_pred             CCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCC
Q 045751          222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAY  274 (492)
Q Consensus       222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~  274 (492)
                      |.++.+|...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            888877776557788888888888877777655 46677888888887776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.25  E-value=6.4e-11  Score=117.00  Aligned_cols=261  Identities=11%  Similarity=0.068  Sum_probs=158.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      +..++++.+..+...     +...+|.++ +|+.+.+..+ ++.++ .+|..+ +|+.+.+.. .+..++...|.+|.+|
T Consensus       112 ~~~l~~i~ip~~i~~-----I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          112 LKGYNEIILPNSVKS-----IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             CSSCSEEECCTTCCE-----ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             cCCccEEEECCccCE-----ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence            456666666554322     445566664 5777777665 55444 344443 577777765 6667776666777777


Q ss_pred             cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCc
Q 045751          239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      +.++++.|.+..++.......+|+.+.+..+ +...-...                      +.++++|+.+.+..+   
T Consensus       183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a----------------------F~~~~~L~~l~l~~~---  236 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQA----------------------FLKTSQLKTIEIPEN---  236 (401)
T ss_dssp             CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTT----------------------TTTCTTCCCEECCTT---
T ss_pred             CeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhH----------------------hhCCCCCCEEecCCC---
Confidence            7777777777777655444566766665432 21111122                      445555555555432   


Q ss_pred             chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCC-----CCCcccccCCCccCeEEEec
Q 045751          319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELM-----EDPMPTLEKLPLLQVLKLKK  392 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~l~~  392 (492)
                      ....-..++.+ .+|+.+.+.     .+++.+.- .+.+| ++|+.+.+.++.+.     ......|.++++|+.+.+. 
T Consensus       237 l~~I~~~aF~~-~~L~~i~lp-----~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-  308 (401)
T 4fdw_A          237 VSTIGQEAFRE-SGITTVKLP-----NGVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-  308 (401)
T ss_dssp             CCEECTTTTTT-CCCSEEEEE-----TTCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred             ccCcccccccc-CCccEEEeC-----CCccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence            11111122333 456666654     23333322 56677 78888888877653     2344577899999999998 


Q ss_pred             cccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCCC-CCcEEEecCCC
Q 045751          393 NSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSVK-RFKKLELWRPQ  467 (492)
Q Consensus       393 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~  467 (492)
                      +.+... -...+.++++|+.+.|..  +++.+.. .+..+ +|+.+.+.++......+..+..++ +++.|.+-...
T Consensus       309 ~~i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          309 ESIRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTCCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CceEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            444332 245577889999999976  4666653 47788 999999998865443344566664 78888886644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.24  E-value=6.5e-11  Score=116.95  Aligned_cols=259  Identities=11%  Similarity=0.070  Sum_probs=154.7

Q ss_pred             CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751          138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR  215 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~  215 (492)
                      ...+..+.+. +....+...+| ..+|+++.+..+-.     .+...+|.++ .|+.+.+.+ .++.++ .+|..|.+|+
T Consensus       112 ~~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          112 LKGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEGLK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             CSSCSEEECC-TTCCEECTTTTTTCCCSEEECCTTCC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             cCCccEEEEC-CccCEehHhhcccCCccEEEeCCCcc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            3566777777 77777777777 55899999877632     2555677775 699999986 566555 6788999999


Q ss_pred             EEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCccccCCcccceeecCC-C
Q 045751          216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-P  293 (492)
Q Consensus       216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~  293 (492)
                      .+++..+.+..++...|. +.+|+.+.+..+ +..++. .|.++++|+.+++..+ +...-...+.. .+|+.+.+.+ .
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i  259 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGV  259 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTC
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCc
Confidence            999999999999998866 689999999855 666654 4888999999988754 21111222222 4555555543 2


Q ss_pred             CccchhhhCCCcccceEEeeeccCc--ch-hhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEeccc
Q 045751          294 RCCTPDILGRLPNLRKLRIHGDLSN--NQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTE  370 (492)
Q Consensus       294 ~~~~~~~l~~l~~L~~L~l~~~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~  370 (492)
                      ......++.+|++|+.+.+.++...  .. ..-...+.                           .| ++|+.+.+.. .
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------------------------~c-~~L~~l~l~~-~  310 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------------------------GC-PKLARFEIPE-S  310 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------------------------TC-TTCCEECCCT-T
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------------------------CC-ccCCeEEeCC-c
Confidence            2222333566666666666554100  00 01122333                           44 4455554442 2


Q ss_pred             CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCccc-cccEEEEee
Q 045751          371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMP-KLECLIIDP  441 (492)
Q Consensus       371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~-~L~~L~l~~  441 (492)
                      +.......|.++++|+.+.+..+ ++.. -...+.++ +|+.+.+.++ .+..++ ..+..++ +++.|.+-.
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             eEEEhhhhhcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence            23333345556666666666432 2211 12334555 6666666665 333332 2234443 455666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=1.7e-13  Score=122.03  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             hccCCcEEEEEecCCcC-------CCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhc
Q 045751          185 CKMFKFLRVLDLGSLVL-------SQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE  257 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~l-------~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~  257 (492)
                      +.....++.++++++.+       +.+|..++.+++|++|++++|.+..+| .+ .++++|++|++++|.+..+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhc
Confidence            44444544444444443       344457788888888888888888777 55 7888888888888877777777777


Q ss_pred             ccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +++|++|++++|.+.+                       ++. +..+++|+.|++++|
T Consensus        92 ~~~L~~L~L~~N~l~~-----------------------l~~-~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-----------------------LSG-IEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHCSEEEEEEEECCC-----------------------HHH-HHHHHHSSEEEESEE
T ss_pred             CCcCCEEECcCCcCCc-----------------------CCc-cccCCCCCEEECCCC
Confidence            7888888888877532                       122 666777888888887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=2.8e-11  Score=105.53  Aligned_cols=84  Identities=23%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      ++|++|++++|.++.+|. .+..+++|++|++++|.+..+|...|..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            456666666666665543 345666666666666666666655446666666666666666555543 455666666666


Q ss_pred             cccccC
Q 045751          267 GLFTLP  272 (492)
Q Consensus       267 ~~~~~~  272 (492)
                      ++|.+.
T Consensus       108 ~~N~l~  113 (177)
T 2o6r_A          108 DTNQLK  113 (177)
T ss_dssp             CSSCCS
T ss_pred             cCCcce
Confidence            666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=5.4e-12  Score=121.78  Aligned_cols=280  Identities=12%  Similarity=-0.009  Sum_probs=172.3

Q ss_pred             CeeEEEEecCCCCccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcc------
Q 045751          140 MIKRLTANVNLSELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIEN------  210 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~------  210 (492)
                      ++++|.+. +.+.......+   +++|++|++++|.+..     .......++.++.+.+..+.+.  +..|..      
T Consensus        26 ~l~~L~l~-g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~-----~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~   97 (329)
T 3sb4_A           26 SITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKM-----YSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVT   97 (329)
T ss_dssp             HCSEEEEE-EEECHHHHHHHHHSCTTCCEEEEEEEEECC-----EEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred             ceeEEEEe-ccccHHHHHHHHHhhccCeEEecCcceeEE-----ecCccccccccccccccccccC--HHHhcccccccc
Confidence            46777776 32222111222   5789999999887651     0001112222444555554332  134555      


Q ss_pred             --ccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccc----cCCCCCccccCCc
Q 045751          211 --LFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFT----LPAYPRNDCGSLE  283 (492)
Q Consensus       211 --l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~----~~~~~p~~~~~l~  283 (492)
                        |++|+.+.+.. .++.+++..|.+|++|+.+++++|.+..++.. |..+.++..+......    ....-...+.++.
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence              88888888887 78888887778888888888888877666543 5566666666544321    1111112233344


Q ss_pred             ccc-eeecCCCCccchhh---hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCC
Q 045751          284 NLN-FISALHPRCCTPDI---LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFP  358 (492)
Q Consensus       284 ~L~-~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp  358 (492)
                      .|+ .+.+..........   .....++..+.+.+.  ............+++|+.++++.    .+++.+.- .+.++ 
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~----n~i~~I~~~aF~~~-  249 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISK----TNATTIPDFTFAQK-  249 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTT----BCCCEECTTTTTTC-
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCC----CCcceecHhhhhCC-
Confidence            554 33333222222211   123567778888776  22233333333489999999973    34665543 57788 


Q ss_pred             CCceEEEEecccCCCCCcccccCCCccC-eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccE
Q 045751          359 PSLTHLSFSNTELMEDPMPTLEKLPLLQ-VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLEC  436 (492)
Q Consensus       359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~  436 (492)
                      .+|++|++.++ +.......|.++++|+ .+.+.+ .++.. -...+.++++|+.+++.++ .++.++. .+..+++|+.
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCE
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhh
Confidence            89999999987 6566677889999999 999985 44432 2456889999999999876 7888865 5888999998


Q ss_pred             EEE
Q 045751          437 LII  439 (492)
Q Consensus       437 L~l  439 (492)
                      ++.
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=3.2e-11  Score=104.78  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             CcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751          189 KFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      ++|++|+|++|.++.+ |..+..+++|++|++++|.+..+|..+|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            4555555555555543 34455555555555555555555555445555555555555555555543 555555555555


Q ss_pred             ccccc
Q 045751          267 GLFTL  271 (492)
Q Consensus       267 ~~~~~  271 (492)
                      ++|.+
T Consensus       113 ~~N~~  117 (174)
T 2r9u_A          113 YNNPW  117 (174)
T ss_dssp             CSSCB
T ss_pred             CCCCc
Confidence            55544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=4.4e-11  Score=103.48  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             CcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751          189 KFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L  266 (492)
                      ++|++|+|++|.++.+ |..+..+++|++|++++|.++.+|...|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4455555555555544 34455555555555555555555555445555555555555555555442 455555555555


Q ss_pred             ccccc
Q 045751          267 GLFTL  271 (492)
Q Consensus       267 ~~~~~  271 (492)
                      ++|.+
T Consensus       110 ~~N~~  114 (170)
T 3g39_A          110 LNNPW  114 (170)
T ss_dssp             CSSCB
T ss_pred             CCCCC
Confidence            55544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=9.4e-10  Score=108.78  Aligned_cols=283  Identities=14%  Similarity=0.102  Sum_probs=136.5

Q ss_pred             ccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCC-----------
Q 045751          157 EDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIP-----------  222 (492)
Q Consensus       157 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~-----------  222 (492)
                      .+|  |.+|+++.+..+-.     .+...+|.+|++|+.+++.++ ++.++ ..+..+.+|+.+.+..+           
T Consensus        65 ~AF~~c~~L~~i~lp~~i~-----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~  138 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPSTVR-----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG  138 (394)
T ss_dssp             TTTTTCTTEEEEECCTTCC-----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred             HHhhCCCCceEEEeCCCcc-----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence            445  66777777654321     244556677777777777543 33333 34455555555444321           


Q ss_pred             ----------CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751          223 ----------SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL  291 (492)
Q Consensus       223 ----------~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~  291 (492)
                                .+..+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+++..+ +...-...+.++..|+.+.+.
T Consensus       139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence                      122233344566667777766554 22333 23556666666665443 111112223335555555444


Q ss_pred             CCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEeccc
Q 045751          292 HPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTE  370 (492)
Q Consensus       292 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~  370 (492)
                      ..............+|+.+.+...   ....-...+..+..|+.+.+..     ++..+.- .+..+ ..++.+......
T Consensus       217 ~~~~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~-----~~~~i~~~~F~~~-~~l~~~~~~~~~  287 (394)
T 4fs7_A          217 NSLYYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQN-----NKLRIGGSLFYNC-SGLKKVIYGSVI  287 (394)
T ss_dssp             TTCCEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECC-----TTCEECSCTTTTC-TTCCEEEECSSE
T ss_pred             CCceEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCC-----Ccceeeccccccc-cccceeccCcee
Confidence            321111111333345555555432   1111112344555555555542     1111111 33344 555555554433


Q ss_pred             CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc
Q 045751          371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP  449 (492)
Q Consensus       371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp  449 (492)
                      +   ....+..+.+|+.+.+..+ +... -...+.++.+|+.+.+.+  .++.+.. .+..+++|+.+.+..+  ++.++
T Consensus       288 i---~~~~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~  358 (394)
T 4fs7_A          288 V---PEKTFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIG  358 (394)
T ss_dssp             E---CTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEEC
T ss_pred             e---ccccccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEeh
Confidence            2   1224456667777766532 2211 123355666777777754  3555532 3566677777766543  33443


Q ss_pred             -hhccCCCCCcEEEecC
Q 045751          450 -KQLWSVKRFKKLELWR  465 (492)
Q Consensus       450 -~~l~~l~~L~~L~l~~  465 (492)
                       ..+.+|++|+.+++..
T Consensus       359 ~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTBTTCTTCCEEEEEG
T ss_pred             HHHhhCCCCCCEEEECC
Confidence             3566777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=1.9e-10  Score=99.48  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=76.5

Q ss_pred             EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccc
Q 045751          191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLF  269 (492)
Q Consensus       191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~  269 (492)
                      .++++++++.++.+|..+.  ++|++|++++|.|+.+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4689999999999997664  7899999999999988666559999999999999999988865 589999999999999


Q ss_pred             ccCCCCCccccCCcccceee
Q 045751          270 TLPAYPRNDCGSLENLNFIS  289 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~  289 (492)
                      .+.+..+..+..+++|+.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCEeCHHHhcCCCCCCEEE
Confidence            88543333333333333333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=2.1e-10  Score=99.56  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=77.2

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFT  270 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~  270 (492)
                      +.++++++.++.+|..+.  ++|++|++++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            689999999999998765  7999999999999988665559999999999999999999876 5889999999999998


Q ss_pred             cCCCCCccccCCcccceeec
Q 045751          271 LPAYPRNDCGSLENLNFISA  290 (492)
Q Consensus       271 ~~~~~p~~~~~l~~L~~l~~  290 (492)
                      +.+..+..+..+++|+.+++
T Consensus        93 l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEEC
T ss_pred             cceeCHHHhccccCCCEEEe
Confidence            85433322333444444433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.99  E-value=4e-10  Score=128.02  Aligned_cols=109  Identities=10%  Similarity=0.090  Sum_probs=90.9

Q ss_pred             HHHHHHhhcccCChhhHHHHHhhhcccch---------------------------HHHHHHHHhhhcccccccccc---
Q 045751            4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI---------------------------EIVTSLLRDYECEIAGHLVNI---   53 (492)
Q Consensus         4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~---------------------------~i~~~l~~sy~~~l~~~~k~~---   53 (492)
                      +.++++|+++|+|+|||++++|+.|+.+.                           .+..++.+||+ .|+++.|+|   
T Consensus       307 ~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~-~L~~~~~~~~~~  385 (1249)
T 3sfz_A          307 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTD  385 (1249)
T ss_dssp             CTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHH-TSCTTTHHHHHH
T ss_pred             cHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            45799999999999999999999998632                           47889999999 488887766   


Q ss_pred             -------eeecHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhhcc
Q 045751           54 -------IVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAG  123 (492)
Q Consensus        54 -------~~~~~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~~~  123 (492)
                             +.|+++.++.+|.++       ++.++.++++|+++||++...   +|....|+|||++|++++..+.++
T Consensus       386 l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          386 LSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             GGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             hCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence                   368999999999654       466899999999999999765   444467999999999999886544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=2.5e-10  Score=111.65  Aligned_cols=138  Identities=16%  Similarity=0.045  Sum_probs=81.8

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCC--CchhhccccccCEEEccCCCCccCchhHH----
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQ--LPSGIENLFFLRYLKLNIPSLKSLPSSFL----  232 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~i~~lp~~~~----  232 (492)
                      .+.|++|++++|.+...........+. ..++|++|+|++|.++.  .......+++|++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            567778888777765111112233333 23688888888887762  22222345678888888888763322221    


Q ss_pred             -hcCCCccEEecCCCcccc-----hHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcc
Q 045751          233 -SSISNLYTLDMPFSYIHH-----TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN  306 (492)
Q Consensus       233 -~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~  306 (492)
                       ...++|++|+|++|.++.     ++..+..+++|++|+|++|.+.....                  ..+...+...++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------------------~~L~~~L~~~~~  212 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------------------ELLAAQLDRNRQ  212 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------------------HHHHHHGGGCSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------------------HHHHHHHhcCCC
Confidence             235778888888886643     44556677778888888776532100                  011222556667


Q ss_pred             cceEEeeec
Q 045751          307 LRKLRIHGD  315 (492)
Q Consensus       307 L~~L~l~~~  315 (492)
                      |+.|++++|
T Consensus       213 L~~L~Ls~N  221 (372)
T 3un9_A          213 LQELNVAYN  221 (372)
T ss_dssp             CCEEECCSS
T ss_pred             cCeEECCCC
Confidence            777777777

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.84  E-value=2.5e-08  Score=98.44  Aligned_cols=268  Identities=10%  Similarity=0.070  Sum_probs=166.9

Q ss_pred             hHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhc
Q 045751          180 DCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWE  257 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~  257 (492)
                      +...+|.+|++|+.+.+..+ ++.++ .+|.+|.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..+. ..+..
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            44578899999999999754 66665 56889999999999754 77888888889999998877654 22222 12333


Q ss_pred             ccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeE
Q 045751          258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL  336 (492)
Q Consensus       258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  336 (492)
                      +..+.........  ..-...+..+++|+.+.+.. ........+..+.+|+.+.+..+   ....-...+.++..|+.+
T Consensus       139 ~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~---~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 CDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN---LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             CCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT---CCEECTTTTTTCTTCCBC
T ss_pred             ccccccccCcccc--ccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC---ceEeCchhhcccccccee
Confidence            3222222111111  11122344466666666653 22222333566666766666543   111112345555666655


Q ss_pred             Eeec-----CC---CCCCccEEEe----------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751          337 KLVN-----ES---KMPRLSKIVL----------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR  398 (492)
Q Consensus       337 ~l~~-----~~---~~~~L~~L~l----------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  398 (492)
                      .+..     ++   .+..|+.+.+          .+..+ ..|+.+.+..+.. ......+..++.++.+......+.  
T Consensus       214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~-~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--  289 (394)
T 4fs7_A          214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGC-TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--  289 (394)
T ss_dssp             CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTC-SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--
T ss_pred             ecCCCceEeehhhcccCCCceEEECCCceeccccccccc-ccceeEEcCCCcc-eeeccccccccccceeccCceeec--
Confidence            5543     11   3445555554          34566 7888888876642 334456778888888887654332  


Q ss_pred             cccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhccCCCCCcEEEecC
Q 045751          399 KLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKKLELWR  465 (492)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  465 (492)
                        ...+..+.+|+.+.+.+  .++.+.. .+..+++|+.+++...  ++.++ ..+.+|.+|+.+.+..
T Consensus       290 --~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             --TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred             --ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence              23467789999999976  4666654 4788999999999643  55554 4688999999998854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.81  E-value=2.5e-09  Score=103.80  Aligned_cols=87  Identities=17%  Similarity=0.096  Sum_probs=40.8

Q ss_pred             hccCCcEEEEEecC-CcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751          185 CKMFKFLRVLDLGS-LVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR  262 (492)
Q Consensus       185 ~~~~~~L~~L~L~~-~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~  262 (492)
                      +..+++|++|+|++ |.++.+| ..|+.+++|++|+|++|.|..+++..|.++++|+.|+|++|.+..+|..+.....|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            44444555555543 4444333 334455555555555555554444333455555555555555444443322222255


Q ss_pred             ccccccccc
Q 045751          263 HLNFGLFTL  271 (492)
Q Consensus       263 ~L~L~~~~~  271 (492)
                      .|+|.+|.+
T Consensus       107 ~l~l~~N~~  115 (347)
T 2ifg_A          107 ELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCCc
Confidence            555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=1.6e-09  Score=105.90  Aligned_cols=167  Identities=14%  Similarity=0.053  Sum_probs=115.7

Q ss_pred             CCeeEEEEecCCCCccccccc-------CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chh---
Q 045751          139 KMIKRLTANVNLSELDSLEDF-------NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSG---  207 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~---  207 (492)
                      ..++.+.+..+.+.......+       .++|++|++++|.+.   ..........+++|+.|+|++|.++.. ...   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            467888888666655443332       269999999999875   233344445667899999999998722 222   


Q ss_pred             -h-ccccccCEEEccCCCCcc-----CchhHHhcCCCccEEecCCCcccc-----hHHHhhcccccccccccccccCCCC
Q 045751          208 -I-ENLFFLRYLKLNIPSLKS-----LPSSFLSSISNLYTLDMPFSYIHH-----TADVFWEMNKLRHLNFGLFTLPAYP  275 (492)
Q Consensus       208 -~-~~l~~L~~L~l~~~~i~~-----lp~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~~  275 (492)
                       + ...++|++|++++|.++.     ++..+ ..+++|++|+|++|.++.     ++..+...++|+.|+|++|.+....
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence             3 246789999999999974     44555 789999999999997754     4566788889999999999864211


Q ss_pred             CccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhc
Q 045751          276 RNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYK  329 (492)
Q Consensus       276 p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  329 (492)
                      ..                  .+...+...++|++|++++|  .....-...+..
T Consensus       228 ~~------------------~l~~~L~~~~~L~~L~Ls~N--~i~~~g~~~L~~  261 (372)
T 3un9_A          228 AL------------------ALARAAREHPSLELLHLYFN--ELSSEGRQVLRD  261 (372)
T ss_dssp             HH------------------HHHHHHHHCSSCCEEECTTS--SCCHHHHHHHHH
T ss_pred             HH------------------HHHHHHHhCCCCCEEeccCC--CCCHHHHHHHHH
Confidence            11                  11222556677888888888  344444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.74  E-value=1.2e-08  Score=98.81  Aligned_cols=98  Identities=19%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             EEEecCC-cCCCCchhhccccccCEEEccC-CCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccccc
Q 045751          193 VLDLGSL-VLSQLPSGIENLFFLRYLKLNI-PSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLF  269 (492)
Q Consensus       193 ~L~L~~~-~l~~l~~~~~~l~~L~~L~l~~-~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~  269 (492)
                      .++.+++ .++.+|. +..+++|++|+|++ |.+..+|+..|+++++|+.|+|++|.+..+|. .|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4588888 8999999 99999999999996 99999987666999999999999999988865 5899999999999999


Q ss_pred             ccCCCCCccccCCcccceeecCC
Q 045751          270 TLPAYPRNDCGSLENLNFISALH  292 (492)
Q Consensus       270 ~~~~~~p~~~~~l~~L~~l~~~~  292 (492)
                      .+.+..+..+..+. |+.|++.+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCS
T ss_pred             ccceeCHHHcccCC-ceEEEeeC
Confidence            98643333333343 77777653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.72  E-value=9.3e-09  Score=109.64  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=78.9

Q ss_pred             HHHHHhhcccCChhhHHHHHhhhcccc------------hHHHHHHHHhhhccccccc-ccce----------eecHHHH
Q 045751            5 RLRRLLSGEEVTLPDAAKQLAQNLHTE------------IEIVTSLLRDYECEIAGHL-VNII----------VEEEEMI   61 (492)
Q Consensus         5 ~~~~~i~~~~~GlPLa~~~lg~~L~~~------------~~i~~~l~~sy~~~l~~~~-k~~~----------~~~~~~L   61 (492)
                      .++++|   |+|+|||++++|+.|+++            ..+..++.+||+. ||++. |+||          .|+++.+
T Consensus       317 eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~-Lp~eelK~cFL~LAIFPed~~I~~elL  392 (1221)
T 1vt4_I          317 DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILL  392 (1221)
T ss_dssp             THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHH-SCTTHHHHHHHHTTSSCTTSCEEHHHH
T ss_pred             HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHh-CCHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            344444   999999999999999987            2577889999995 88888 8764          5888999


Q ss_pred             HHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHH
Q 045751           62 YQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPAL  116 (492)
Q Consensus        62 i~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~  116 (492)
                      +.+|+++|.      +.++.++++|+++||++...     ....|+|||++++++
T Consensus       393 a~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          393 SLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred             HHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence            999998862      45889999999999999841     124799999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.64  E-value=5.4e-07  Score=88.82  Aligned_cols=291  Identities=10%  Similarity=0.036  Sum_probs=173.0

Q ss_pred             cccc--C-CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc---CCCCc-hhhccccccCEEEccCCCCccCc
Q 045751          156 LEDF--N-LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV---LSQLP-SGIENLFFLRYLKLNIPSLKSLP  228 (492)
Q Consensus       156 ~~~~--~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---l~~l~-~~~~~l~~L~~L~l~~~~i~~lp  228 (492)
                      ..+|  + ..|+++.+..+..     .+...+|.+|++|+.+.+..+.   ++.+. .+|..+.+|+.+.+.. .+..++
T Consensus        56 ~~aF~~~~~~L~sI~iP~svt-----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~  129 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDTVT-----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEID  129 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTTCC-----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEEC
T ss_pred             HhhccCCCCcCEEEEECCCee-----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceeh
Confidence            3455  4 3589998876533     2566789999999999998763   55554 5677888888887754 467777


Q ss_pred             hhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcc
Q 045751          229 SSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPN  306 (492)
Q Consensus       229 ~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~  306 (492)
                      ...|..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+-  ..+.........|+.+.+.. ....-..++..+.+
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~  206 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFA  206 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred             hhhhhhhcccccccccce-eeeecccceeccccccccccccee--eEeccccccccceeEEEECCcccccccchhhhccc
Confidence            777789999999998765 33333 336777888888765431  12222211234566666653 11122222556666


Q ss_pred             cceEEeeeccCcchhhHH-----------HHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCC
Q 045751          307 LRKLRIHGDLSNNQSLLS-----------KSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMED  374 (492)
Q Consensus       307 L~~L~l~~~~~~~~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~  374 (492)
                      +.................           ........+..+.+.     ..++.+.- .+..+ ..|+.+.+..... ..
T Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-----~~v~~i~~~aF~~c-~~L~~i~lp~~~~-~I  279 (394)
T 4gt6_A          207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-----NGVARIETHAFDSC-AYLASVKMPDSVV-SI  279 (394)
T ss_dssp             CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-----TTEEEECTTTTTTC-SSCCEEECCTTCC-EE
T ss_pred             cceecccccccccccceeecccccccccccccccccccceEEcC-----CcceEcccceeeec-ccccEEecccccc-ee
Confidence            666554432100000000           000011112222221     12221111 45566 7788887765432 23


Q ss_pred             CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhc
Q 045751          375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQL  452 (492)
Q Consensus       375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l  452 (492)
                      ....+.++++|+.+.+. +.+... ....+.++.+|+.+.|..  .++.+.. .+..+.+|+.+.|-.+  ++.++ ..+
T Consensus       280 ~~~aF~~c~~L~~i~l~-~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF  353 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFS-SRITEL-PESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAF  353 (394)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGG
T ss_pred             cCcccccccccccccCC-Cccccc-CceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHh
Confidence            34467788889988886 333321 234567888999999875  4666643 4788899999998643  45554 468


Q ss_pred             cCCCCCcEEEecCCCH
Q 045751          453 WSVKRFKKLELWRPQP  468 (492)
Q Consensus       453 ~~l~~L~~L~l~~c~~  468 (492)
                      .+|++|+.+++.+...
T Consensus       354 ~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          354 SNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTCTTCCEEEESSCHH
T ss_pred             hCCCCCCEEEECCcee
Confidence            8999999999988753

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.52  E-value=1e-07  Score=99.30  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             HHHHHHhhcccCChhhHHHHHhhhcccch---------------------------HHHHHHHHhhhcccccccccce--
Q 045751            4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI---------------------------EIVTSLLRDYECEIAGHLVNII--   54 (492)
Q Consensus         4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~---------------------------~i~~~l~~sy~~~l~~~~k~~~--   54 (492)
                      +..+++|+++|+|+|||++.+|+.++.+.                           .+...+..||+. +|++.|+||  
T Consensus       307 ~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~-L~~~~~~~l~~  385 (591)
T 1z6t_A          307 PEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM-LREDIKDYYTD  385 (591)
T ss_dssp             CTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHT-SCTTTHHHHHH
T ss_pred             cHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence            45789999999999999999999997643                           456788999994 888877653  


Q ss_pred             --------eecHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHH
Q 045751           55 --------VEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV  119 (492)
Q Consensus        55 --------~~~~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~  119 (492)
                              .|+.+.++.+|.++       .+.+..++++|+++++++...   +|....|+||++++++++..
T Consensus       386 la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          386 LSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             GGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHH
T ss_pred             ccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhh
Confidence                    57888899989543       245788999999999999654   33335799999999999876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.52  E-value=6.4e-07  Score=88.32  Aligned_cols=305  Identities=10%  Similarity=0.066  Sum_probs=184.9

Q ss_pred             CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751          139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR  215 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~  215 (492)
                      ..++.+.+. +....+...+|  |.+|+++.+..+.... -..+...+|..+..|+.+.+..+ ++.++ ..+..+.+|+
T Consensus        64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~  140 (394)
T 4gt6_A           64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD  140 (394)
T ss_dssp             SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred             CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence            358899998 77888888888  9999999998653110 02355678899999998877654 44444 5678899999


Q ss_pred             EEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC-
Q 045751          216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR-  294 (492)
Q Consensus       216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~-  294 (492)
                      .+.+.. .+..++...|..+.+|+.+.+..+ +..+........+|+.+.+..+.. ......+..+..+......... 
T Consensus       141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSS
T ss_pred             cccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceeccccccc
Confidence            999964 466777777899999999999775 444443333345688776654321 1222334445556555443100 


Q ss_pred             ccchhh--------------hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCC
Q 045751          295 CCTPDI--------------LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPP  359 (492)
Q Consensus       295 ~~~~~~--------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~  359 (492)
                      ......              ......+..+.+...   ....-..++..+.+|+.+.+..     .+..+.- .+.++ .
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c-~  288 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNC-P  288 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTC-T
T ss_pred             ccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEeccc-----ccceecCcccccc-c
Confidence            000000              111122333333221   1112234577788888888752     2222211 45567 7


Q ss_pred             CceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCccccccEEE
Q 045751          360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMPKLECLI  438 (492)
Q Consensus       360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~  438 (492)
                      +|+.+.+... +.......|.++.+|+.+.+..+ ++.. -...+.++.+|+.+.+..  .++.+. ..+..+++|+.++
T Consensus       289 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          289 ALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence            8888887532 33444557888999999999743 3221 144577889999999975  456554 3478899999999


Q ss_pred             EeecCCcCccchhccCCCCCcEEEecCC
Q 045751          439 IDPCAYLKRLPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       439 l~~c~~l~~lp~~l~~l~~L~~L~l~~c  466 (492)
                      +.++...   ...+..+.+|+.+.+...
T Consensus       364 ~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          364 YSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             ESSCHHH---HHTCBCCCCC--------
T ss_pred             ECCceee---hhhhhccCCCCEEEeCCC
Confidence            9875422   245667788888877543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=7.7e-08  Score=84.12  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=75.1

Q ss_pred             CCCeeEEEeecC-CCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cc
Q 045751          160 NLYLHSLLCLSS-ESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LP  228 (492)
Q Consensus       160 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp  228 (492)
                      .+.|++|++++| .+...........+...+.|++|+|++|.++     .+...+...++|++|++++|.|..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            677888888877 6542112245566677788888888888776     234555666778888888888773     44


Q ss_pred             hhHHhcCCCccEEec--CCCcccc-----hHHHhhccccccccccccccc
Q 045751          229 SSFLSSISNLYTLDM--PFSYIHH-----TADVFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       229 ~~~~~~l~~L~~L~L--~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~  271 (492)
                      ..+ ...++|++|+|  ++|.++.     +...+...++|++|++++|.+
T Consensus       115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            445 66777888888  6675543     445566667788888877765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=3.6e-08  Score=95.58  Aligned_cols=138  Identities=22%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             HHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccccc--CCCccCeEEEec--cccCCC
Q 045751          323 LSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE--KLPLLQVLKLKK--NSYLGR  398 (492)
Q Consensus       323 ~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~--~~~~~~  398 (492)
                      +...+..+++|+.|++++   +..++ +. .+ .. ++|++|+|..|.+.......+.  .+|+|+.|+|+.  +...+.
T Consensus       164 L~~ll~~~P~L~~L~L~g---~~~l~-l~-~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKG---TNNLS-IG-KK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             CHHHHHTCTTCCEEEEEC---CBTCB-CC-SC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHHHhcCCCCcEEEEeC---CCCce-ec-cc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence            445555666777777663   11111 00 11 24 6777777777766444433443  677777777753  111111


Q ss_pred             c-c-----cccCCCCccccEEeecccCCcceEEE---ccCccccccEEEEeecCCcC----ccchhccCCCCCcEEEecC
Q 045751          399 K-L-----TCGSHGFPKLKVLHLKSMLWLEEWTM---GTGAMPKLECLIIDPCAYLK----RLPKQLWSVKRFKKLELWR  465 (492)
Q Consensus       399 ~-~-----~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~  465 (492)
                      . +     ......||+|+.|.+.+|......+.   ....+|+|+.|+++.|....    .++..+.++++|+.|++++
T Consensus       237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            0 0     11123577777777777633211111   12356777777777665433    2344445667777777777


Q ss_pred             CC
Q 045751          466 PQ  467 (492)
Q Consensus       466 c~  467 (492)
                      |.
T Consensus       317 n~  318 (362)
T 2ra8_A          317 NY  318 (362)
T ss_dssp             BB
T ss_pred             Cc
Confidence            64

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=2.1e-07  Score=90.14  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             ccCCcEEEEEecCCcCC----------CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHH
Q 045751          186 KMFKFLRVLDLGSLVLS----------QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADV  254 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~----------~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~  254 (492)
                      .++++|+.|.+......          .+...+..+++|+.|+++++.-..++. +  .+++|++|++..|.+..- ...
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K--PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C--BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c--cCCCCcEEEEecCCCChHHHHH
Confidence            34556666666443211          244445566777777776653223443 3  367777777776654321 122


Q ss_pred             hh--ccccccccccc
Q 045751          255 FW--EMNKLRHLNFG  267 (492)
Q Consensus       255 ~~--~l~~L~~L~L~  267 (492)
                      +.  .+++|++|+|+
T Consensus       213 l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHSBCTTCCEEEEE
T ss_pred             HHHccCCCCcEEEEe
Confidence            32  56777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=1.1e-07  Score=81.17  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CceEEEEecccCCCCCcccccCCCccCeEEEeccc-cCCCcccccCCC----CccccEEeecccCCcceEE-EccCcccc
Q 045751          360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS-YLGRKLTCGSHG----FPKLKVLHLKSMLWLEEWT-MGTGAMPK  433 (492)
Q Consensus       360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~-~~~~~l~~  433 (492)
                      .|++|++++|.+++.....+.++++|+.|+|++|. +++..+.. +..    .++|+.|+|++|+.++.-- ..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            56667777666665555556666666666666664 44333221 111    2356666666665555210 11344556


Q ss_pred             ccEEEEeecCCcC
Q 045751          434 LECLIIDPCAYLK  446 (492)
Q Consensus       434 L~~L~l~~c~~l~  446 (492)
                      |+.|++++|+.++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            6666666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=2.2e-07  Score=81.16  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=85.8

Q ss_pred             hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCcc-----CchhHHhcCCCccEEecCCCcc
Q 045751          180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      .....+...+.|++|+|++| .++     .+...+...++|++|+|++|.|..     +...+ ...++|++|+|++|.+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC
Confidence            56678888999999999999 876     345667778899999999999873     44445 6778899999999977


Q ss_pred             cc-----hHHHhhcccccccccc--cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeecc
Q 045751          249 HH-----TADVFWEMNKLRHLNF--GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL  316 (492)
Q Consensus       249 ~~-----lp~~~~~l~~L~~L~L--~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  316 (492)
                      +.     +...+...++|++|++  ++|.+.....                  ..+...+...++|++|++++|.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence            54     4566777788888888  6676532111                  1122225666778888888873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.28  E-value=7.2e-06  Score=80.21  Aligned_cols=95  Identities=7%  Similarity=-0.024  Sum_probs=48.8

Q ss_pred             CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccC
Q 045751          139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLR  215 (492)
Q Consensus       139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~  215 (492)
                      .+++.+.+. +.+..+...+|  |.+|+++.+..+..     .+...+|.++ .|..+.+..+ ++.++. +|.. .+|+
T Consensus        46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~-----~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~  116 (379)
T 4h09_A           46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT-----SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD  116 (379)
T ss_dssp             GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC-----EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred             cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce-----EechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence            456677776 66666666666  67777777754422     2444556665 3555555432 333332 2332 3566


Q ss_pred             EEEccCCCCccCchhHHhcCCCccEEecC
Q 045751          216 YLKLNIPSLKSLPSSFLSSISNLYTLDMP  244 (492)
Q Consensus       216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~  244 (492)
                      .+.+..+ +..+....|.++ +|+...+.
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~  143 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIP  143 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred             cccCCCc-cccccccccccc-eeeeeecc
Confidence            6666543 334444443443 34444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=1.2e-06  Score=74.76  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCc----cccccEEEEeecCCcCc-cchhccCCC
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGA----MPKLECLIIDPCAYLKR-LPKQLWSVK  456 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~-lp~~l~~l~  456 (492)
                      ..|+.|++++|.+++..+.. +..+++|+.|+|++|..++..- ..+..    .++|+.|+|++|+.++. --..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            47999999999988777544 5789999999999998887431 11333    46899999999987763 223567899


Q ss_pred             CCcEEEecCCC
Q 045751          457 RFKKLELWRPQ  467 (492)
Q Consensus       457 ~L~~L~l~~c~  467 (492)
                      +|++|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999998

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=3.1e-05  Score=75.68  Aligned_cols=277  Identities=9%  Similarity=0.045  Sum_probs=134.6

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      ..+|+++.+...-.     .+...+|.+|.+|+.+.|..+ ++.++ .+|..+ +|+.+.+.. .+..++...|..+ +|
T Consensus        45 ~~~i~~v~ip~~vt-----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           45 RDRISEVRVNSGIT-----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGCSEEEECTTEE-----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred             ccCCEEEEeCCCcc-----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence            56788888765432     255677888888888888654 55554 445555 577776653 4667777765554 78


Q ss_pred             cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC---------------ccchhhhCC
Q 045751          239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR---------------CCTPDILGR  303 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~---------------~~~~~~l~~  303 (492)
                      +.+.+..+ +..+........+|+...+..+ +...-...+..+..+....+....               ..... +..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  192 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES-YPA  192 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE-CCT
T ss_pred             ccccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc-ccc
Confidence            88888665 2233222222223444433221 111111222234444444433100               00001 222


Q ss_pred             CcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCC
Q 045751          304 LPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKL  382 (492)
Q Consensus       304 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l  382 (492)
                      ...+..+.+...   ........+..+.+|+.+.+..     +++.+.- .+..+ ..|+.+.+..+ +.......+.++
T Consensus       193 ~~~~~~~~~~~~---~~~i~~~~f~~~~~l~~i~~~~-----~~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~  262 (379)
T 4h09_A          193 AKTGTEFTIPST---VKTVTAYGFSYGKNLKKITITS-----GVTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNC  262 (379)
T ss_dssp             TCCCSEEECCTT---CCEECTTTTTTCSSCSEEECCT-----TCCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccccccc---eeEEeecccccccccceeeecc-----ceeEEccccccCC-ccceEEEcCCC-ccEeCcccccee
Confidence            223333332221   1111122334445555555532     1221111 23345 56666666543 222333455566


Q ss_pred             CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhccCCCCCcE
Q 045751          383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKK  460 (492)
Q Consensus       383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~  460 (492)
                      .+|+.+.+..+ +... ....+.++++|+.+.+.++ .++.++. .+..+++|+.+.+..+  ++.++ ..+.+|.+|+.
T Consensus       263 ~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          263 TALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCC
T ss_pred             ehhcccccccc-ceec-ccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCE
Confidence            66666666522 2211 1233556667777777653 4555542 3566677777766432  34443 34666677776


Q ss_pred             EEe
Q 045751          461 LEL  463 (492)
Q Consensus       461 L~l  463 (492)
                      +.+
T Consensus       338 i~i  340 (379)
T 4h09_A          338 ISY  340 (379)
T ss_dssp             CCC
T ss_pred             EEE
Confidence            665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=1.4e-05  Score=73.43  Aligned_cols=78  Identities=23%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             ccCCcEEEEEecCCcCCCCc---hhhccccccCEEEccCCCCccCchhHHhcCC--CccEEecCCCcccc-hH-------
Q 045751          186 KMFKFLRVLDLGSLVLSQLP---SGIENLFFLRYLKLNIPSLKSLPSSFLSSIS--NLYTLDMPFSYIHH-TA-------  252 (492)
Q Consensus       186 ~~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~--~L~~L~L~~~~l~~-lp-------  252 (492)
                      .++++|+.|+|++|.++.++   ..+..+++|++|+|++|.|..+. .+ ..+.  +|++|+|++|.+.. +|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45677777777777766433   45566777777777777777552 23 4444  67777777775532 21       


Q ss_pred             HHhhccccccccc
Q 045751          253 DVFWEMNKLRHLN  265 (492)
Q Consensus       253 ~~~~~l~~L~~L~  265 (492)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2255666666663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.89  E-value=1.7e-06  Score=79.59  Aligned_cols=66  Identities=24%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             ccccccCEEEccCCCCccCc---hhHHhcCCCccEEecCCCcccchHHHhhccc--ccccccccccccCCCCC
Q 045751          209 ENLFFLRYLKLNIPSLKSLP---SSFLSSISNLYTLDMPFSYIHHTADVFWEMN--KLRHLNFGLFTLPAYPR  276 (492)
Q Consensus       209 ~~l~~L~~L~l~~~~i~~lp---~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~L~~~~~~~~~p  276 (492)
                      ..+++|+.|+|++|.|..++   ..+ ..+++|+.|+|++|.+..+. .+..+.  +|+.|+|++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            46889999999999998655   444 89999999999999887773 355555  89999999998876655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.06  E-value=0.00049  Score=59.73  Aligned_cols=109  Identities=14%  Similarity=0.016  Sum_probs=56.1

Q ss_pred             CCCeeEEEeecC-CCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cc
Q 045751          160 NLYLHSLLCLSS-ESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LP  228 (492)
Q Consensus       160 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp  228 (492)
                      .+.|+.|+++++ .+.......+...+..-+.|+.|+|++|.+.     .+...+..-+.|++|+|++|.|..     +-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            455666666653 4331112234555566666666666666655     333444455566666666666651     22


Q ss_pred             hhHHhcCCCccEEecCCC---ccc-----chHHHhhccccccccccccc
Q 045751          229 SSFLSSISNLYTLDMPFS---YIH-----HTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       229 ~~~~~~l~~L~~L~L~~~---~l~-----~lp~~~~~l~~L~~L~L~~~  269 (492)
                      ..+ ..-+.|++|+|+++   .++     .+...+..-+.|+.|+++.+
T Consensus       120 ~aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          120 RST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            222 33445666666543   222     23333445555666655444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.61  E-value=0.0028  Score=51.19  Aligned_cols=54  Identities=24%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             EEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcc
Q 045751          193 VLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       193 ~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      +++.+++.++  .+|..+.  .+|++|+|++|.|+.+|..+|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            6788888888  8886543  4799999999999999999889999999999999843

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.30  E-value=0.0059  Score=52.91  Aligned_cols=89  Identities=9%  Similarity=0.068  Sum_probs=65.6

Q ss_pred             hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcc
Q 045751          180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      .+...+.+-+.|+.|+|+++ .+.     .+-+.+..-+.|+.|+|++|.|.     .+...+ ..-+.|++|+|++|.+
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC
Confidence            55667778889999999986 665     34566677788999999999987     344444 6678899999999976


Q ss_pred             c-----chHHHhhccccccccccccc
Q 045751          249 H-----HTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       249 ~-----~lp~~~~~l~~L~~L~L~~~  269 (492)
                      +     .+-..+..-+.|++|+|++|
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCC
Confidence            4     33444566667888888754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.38  E-value=0.0093  Score=48.09  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=46.1

Q ss_pred             CEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccC
Q 045751          215 RYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       215 ~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~  272 (492)
                      ..++.++++++  .+|..+   -.+|++|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888889998  999755   45799999999999999865 678999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 44/251 (17%), Positives = 85/251 (33%), Gaps = 13/251 (5%)

Query: 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH 250
           LRV+    L L ++P  +        L L    +  +      ++ NL+TL +  + I  
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 251 T-ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309
                F  + KL  L      L   P     +L+ L              +   L  +  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV-HENEITKVRKSVFNGLNQMIV 128

Query: 310 LRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNT 369
           + +  +   +  + + +   +  L  +++ +       + I       PPSLT L     
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD-------TNITTIPQGLPPSLTELHLDGN 181

Query: 370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTG 429
           ++ +    +L+ L  L  L L  NS             P L+ LHL +   L +   G  
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHL-NNNKLVKVPGGLA 239

Query: 430 AMPKLECLIID 440
               ++ + + 
Sbjct: 240 DHKYIQVVYLH 250

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 44/230 (19%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 188 FKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS 246
            K L  L L +  +S++ P     L  L  L L+   LK LP     ++  L   +   +
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113

Query: 247 YIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN 306
            +  +         +  L                 ++ L++I  +     T    G  P+
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR-IADTNITTIPQGLPPS 172

Query: 307 LRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF 366
           L +L     L  N+ +       L  L +L  +  S     +          P L  L  
Sbjct: 173 LTEL----HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHL 226

Query: 367 SNTELMEDPMPTLEKLPLLQVLKLKKN--SYLGRKLTCGSHGFPKLKVLH 414
           +N +L++ P   L     +QV+ L  N  S +G    C      K     
Sbjct: 227 NNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/195 (11%), Positives = 55/195 (28%), Gaps = 9/195 (4%)

Query: 152 ELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENL 211
           +L  L +        L +                     + +               + +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 212 FFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI-HHTADVFWEMNKLRHLNFGLFT 270
             L Y+++   ++ ++P        +L  L +  + I    A     +N L  L     +
Sbjct: 150 KKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 271 LPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHG----DLSNNQSLLSK 325
           + A       +  +L  +   +      P  L     ++ + +H      + +N      
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 326 SLYKLSSLESLKLVN 340
              K +S   + L +
Sbjct: 267 YNTKKASYSGVSLFS 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMP 244
             +   L  L L    L  + + + +L  L  L L    + +L    LS ++ L  L + 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 245 FSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRL 304
            + I +   +          N  L        +   +L+NL +++           +  L
Sbjct: 272 ANQISN---ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 328

Query: 305 PNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHL 364
             L++L      +NN+     SL  L+++  L   +     ++S +          +T L
Sbjct: 329 TKLQRL----FFANNKVSDVSSLANLTNINWLSAGHN----QISDLT--PLANLTRITQL 378

Query: 365 SFSN 368
             ++
Sbjct: 379 GLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=5.1e-22  Score=194.22  Aligned_cols=282  Identities=18%  Similarity=0.213  Sum_probs=186.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ..+|++|.+.++.+..    .  ..+..+++|++|++++|.++.+|+ ++++++|++|++++|.+..+++ + +++++|+
T Consensus        43 l~~l~~L~l~~~~I~~----l--~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l-~~l~~L~  113 (384)
T d2omza2          43 LDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT  113 (384)
T ss_dssp             HTTCCEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred             hCCCCEEECCCCCCCC----c--cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-c-ccccccc
Confidence            6789999999998862    2  347789999999999999998875 8999999999999999998875 5 8999999


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCC-----------------------------------------CCCcc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA-----------------------------------------YPRND  278 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~-----------------------------------------~~p~~  278 (492)
                      .|+++++.+..++. ......+.......+.+..                                         ..+..
T Consensus       114 ~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
T d2omza2         114 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV  192 (384)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            99999887666543 2222333333332222111                                         11112


Q ss_pred             ccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC--------CCCCccE
Q 045751          279 CGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES--------KMPRLSK  349 (492)
Q Consensus       279 ~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~  349 (492)
                      ...++++..+.+++ ....... ...+++|++|++++|.   ...+ ..+..+++|+.|+++++.        .+++|+.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCC---CCCc-chhhcccccchhccccCccCCCCcccccccCCE
Confidence            22355555555553 2222233 4556667777777662   1222 245666777777776522        3445555


Q ss_pred             EEe---------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCC
Q 045751          350 IVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLW  420 (492)
Q Consensus       350 L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  420 (492)
                      |++         .+..+ +.++.+.+..|.+.+  +..+..+++++.|++++|.+.+..   .+..+++|++|++++| .
T Consensus       268 L~l~~~~l~~~~~~~~~-~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n-~  340 (384)
T d2omza2         268 LKLGANQISNISPLAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANN-K  340 (384)
T ss_dssp             EECCSSCCCCCGGGTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSS-C
T ss_pred             eeccCcccCCCCccccc-ccccccccccccccc--ccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCC-C
Confidence            544         23445 566666666666533  334667788888888888776532   2567888888888887 6


Q ss_pred             cceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCC
Q 045751          421 LEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       421 l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  466 (492)
                      ++.++ .+..+++|+.|++++|... .+++ +.++++|+.|+|+++
T Consensus       341 l~~l~-~l~~l~~L~~L~l~~N~l~-~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDVS-SLANLTNINWLSAGHNQIS-DLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCh-hHcCCCCCCEEECCCCcCC-CChh-hccCCCCCEeeCCCC
Confidence            66665 4777888888888887644 4543 778888888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=5e-21  Score=181.18  Aligned_cols=244  Identities=14%  Similarity=0.172  Sum_probs=152.0

Q ss_pred             cEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGL  268 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~  268 (492)
                      .+++|+|++|.++.+|+ .|.++++|++|++++|.+..+++..|.++++|++|++++|+++.+|..  ....++.|++.+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhccc
Confidence            44555555555554442 344455555555555555544333234555555555555544444432  122344444444


Q ss_pred             cccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751          269 FTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS  348 (492)
Q Consensus       269 ~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~  348 (492)
                      |.+.                      ......+.....+..+....+........+..+..+++|+.++++.    .++.
T Consensus       110 n~l~----------------------~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~----n~l~  163 (305)
T d1xkua_         110 NEIT----------------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNIT  163 (305)
T ss_dssp             SCCC----------------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS----SCCC
T ss_pred             cchh----------------------hhhhhhhhccccccccccccccccccCCCccccccccccCcccccc----CCcc
Confidence            3332                      1222224555556666666553233334445566777788777763    2232


Q ss_pred             EEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc
Q 045751          349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT  428 (492)
Q Consensus       349 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  428 (492)
                      .+  ....+ ++|++|++++|......+..+.+++.++.|++++|.+.+.. +..+.++++|++|+|++| .++.+|..+
T Consensus       164 ~l--~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N-~L~~lp~~l  238 (305)
T d1xkua_         164 TI--PQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVKVPGGL  238 (305)
T ss_dssp             SC--CSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSSCCTTT
T ss_pred             cc--CcccC-CccCEEECCCCcCCCCChhHhhccccccccccccccccccc-cccccccccceeeecccc-ccccccccc
Confidence            22  12234 88999999999887777788899999999999988876543 445678899999999998 788888888


Q ss_pred             CccccccEEEEeecCCcCccch-------hccCCCCCcEEEecCCC
Q 045751          429 GAMPKLECLIIDPCAYLKRLPK-------QLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       429 ~~l~~L~~L~l~~c~~l~~lp~-------~l~~l~~L~~L~l~~c~  467 (492)
                      ..+++|+.|++++|. ++.++.       .....++|+.|+++++|
T Consensus       239 ~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         239 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999999999999986 444433       23557889999999998

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=2.2e-22  Score=191.44  Aligned_cols=249  Identities=17%  Similarity=0.173  Sum_probs=151.6

Q ss_pred             CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecC-CcCC-CCchhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGS-LVLS-QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .+++.|+++++....  ....+..+.++++|++|+|++ |.++ .+|..|+++++|++|++++|++..++...|..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g--~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCC--CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            367777777776541  112446777888888888876 5565 788888888888888888888885555544788888


Q ss_pred             cEEecCCCcc-cchHHHhhcccccccccccccccCCCCCccccCCccc-ceeecCC---CCccchhhhCCCcccceEEee
Q 045751          239 YTLDMPFSYI-HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL-NFISALH---PRCCTPDILGRLPNLRKLRIH  313 (492)
Q Consensus       239 ~~L~L~~~~l-~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L-~~l~~~~---~~~~~~~~l~~l~~L~~L~l~  313 (492)
                      +++++++|.+ ..+|..+.++++|+.+++++|.+.+.+|..+..+..+ +.+.+..   ....+.. +..+..+ .+++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l~  205 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEECC
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-ccccc
Confidence            8888888843 5567778888888888888888777777776665554 4444432   1111222 3333222 34444


Q ss_pred             eccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEecc
Q 045751          314 GDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN  393 (492)
Q Consensus       314 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  393 (492)
                      .+  ......|..+.                           .+ ++++.+++.+|.+.+. +..++.+++|+.|++++|
T Consensus       206 ~~--~~~~~~~~~~~---------------------------~~-~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         206 RN--MLEGDASVLFG---------------------------SD-KNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             SS--EEEECCGGGCC---------------------------TT-SCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSS
T ss_pred             cc--ccccccccccc---------------------------cc-cccccccccccccccc-ccccccccccccccCccC
Confidence            43  23333333333                           34 5556666666655433 234556666666666666


Q ss_pred             ccCCCcccccCCCCccccEEeecccCCcc-eEEEccCccccccEEEEeecCCcCc
Q 045751          394 SYLGRKLTCGSHGFPKLKVLHLKSMLWLE-EWTMGTGAMPKLECLIIDPCAYLKR  447 (492)
Q Consensus       394 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~  447 (492)
                      ++++.. +..++.+++|++|+|++| .++ .+| .++.+++|+.+++.+|+.+..
T Consensus       255 ~l~g~i-P~~l~~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         255 RIYGTL-PQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCEECC-CGGGGGCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSSSEEES
T ss_pred             eecccC-ChHHhCCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCCccccC
Confidence            665432 444566666666666666 444 444 345666676676666665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.8e-20  Score=183.08  Aligned_cols=275  Identities=16%  Similarity=0.117  Sum_probs=184.2

Q ss_pred             CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccC
Q 045751          138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLR  215 (492)
Q Consensus       138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~  215 (492)
                      ..++++|.+..+.+..+.  .+  +++|++|++++|.+..    ..  .++++++|++|++++|.++.+++ ++.+++|+
T Consensus        43 l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~----l~--~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~  113 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD----IT--PLKNLTKLVDILMNNNQIADITP-LANLTNLT  113 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC----CG--GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             hCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCC----Cc--cccCCcccccccccccccccccc-cccccccc
Confidence            357899999977777653  34  9999999999998862    22  38999999999999999997765 88999999


Q ss_pred             EEEccCCCCccCchhH---------------------------------------------------------------H
Q 045751          216 YLKLNIPSLKSLPSSF---------------------------------------------------------------L  232 (492)
Q Consensus       216 ~L~l~~~~i~~lp~~~---------------------------------------------------------------~  232 (492)
                      .|+++++.+..++...                                                               +
T Consensus       114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            9999987765433221                                                               1


Q ss_pred             hcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEE
Q 045751          233 SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLR  311 (492)
Q Consensus       233 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~  311 (492)
                      ..+++++.+++++|.+..++. ....++|+.|++++|.+..  ++.+..+++|+.+++.+ .....+. ++.+++|+.|+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~  269 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELK  269 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             ccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc-ccccccCCEee
Confidence            334555555555555544433 3445555555555555432  12344455555555543 2222333 55555555555


Q ss_pred             eeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEe
Q 045751          312 IHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLK  391 (492)
Q Consensus       312 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  391 (492)
                      ++++.  .. .++ .+..++.++.+.+..    ..++.+. .+..+ ++++.|++++|.+.+..  .+..+++|+.|+++
T Consensus       270 l~~~~--l~-~~~-~~~~~~~l~~l~~~~----n~l~~~~-~~~~~-~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         270 LGANQ--IS-NIS-PLAGLTALTNLELNE----NQLEDIS-PISNL-KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             CCSSC--CC-CCG-GGTTCTTCSEEECCS----SCCSCCG-GGGGC-TTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             ccCcc--cC-CCC-ccccccccccccccc----ccccccc-ccchh-cccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            55542  11 111 234445555555442    1121111 35566 89999999999986543  48899999999999


Q ss_pred             ccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeec
Q 045751          392 KNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC  442 (492)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c  442 (492)
                      +|.+++..   .+..+++|++|++++| .++.++. +.++++|+.|+|++|
T Consensus       338 ~n~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSDVS---SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCCCG---GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCh---hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            99887632   4678999999999998 6777764 889999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=5.6e-22  Score=188.51  Aligned_cols=242  Identities=19%  Similarity=0.197  Sum_probs=185.3

Q ss_pred             CcEEEEEecCCcCC---CCchhhccccccCEEEccC-CCCc-cCchhHHhcCCCccEEecCCCcccchH-HHhhcccccc
Q 045751          189 KFLRVLDLGSLVLS---QLPSGIENLFFLRYLKLNI-PSLK-SLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLR  262 (492)
Q Consensus       189 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~  262 (492)
                      .+++.|+|+++.++   .+|+.++++++|++|++++ |.+. .+|+.+ +++++|++|++++|.+..++ ..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            47999999999887   5889999999999999986 7787 899998 99999999999999886654 5588899999


Q ss_pred             cccccccccCCCCCccccCCcccceeecCCC---CccchhhhCCCccc-ceEEeeeccCcchhhHHHHhhcCCCCCeEEe
Q 045751          263 HLNFGLFTLPAYPRNDCGSLENLNFISALHP---RCCTPDILGRLPNL-RKLRIHGDLSNNQSLLSKSLYKLSSLESLKL  338 (492)
Q Consensus       263 ~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~---~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  338 (492)
                      .+++++|...+.+|..+++++.++.+++++.   ...+.. +..+..+ +.+.++.|  ......+..            
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n--~l~~~~~~~------------  193 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN--RLTGKIPPT------------  193 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSS--EEEEECCGG------------
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccc--ccccccccc------------
Confidence            9999999887777777666666666665531   122222 4444443 44444444  122222221            


Q ss_pred             ecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          339 VNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       339 ~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                                     +..+  ....+++..+...+..+..++.+++++.+++.+|.+.+.  +..++.+++|+.|++++|
T Consensus       194 ---------------~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~--~~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         194 ---------------FANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             ---------------GGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSS
T ss_pred             ---------------cccc--ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccCccC
Confidence                           2222  334577777777778888889999999999999988764  335788899999999998


Q ss_pred             CCcc-eEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751          419 LWLE-EWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       419 ~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~  467 (492)
                       .++ .+|..++.+++|+.|++++|...+.+|. +.++++|+.+++.+++
T Consensus       255 -~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         255 -RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             -eecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence             555 7899999999999999999987777885 5788999999998886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=8.6e-20  Score=172.55  Aligned_cols=251  Identities=18%  Similarity=0.150  Sum_probs=167.2

Q ss_pred             CCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCch
Q 045751          151 SELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPS  229 (492)
Q Consensus       151 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~  229 (492)
                      ...+| ..+.+.+++|++++|.+.    ......|.++++|++|++++|.+..+ |..|..+++|++|++++|+++.+|.
T Consensus        22 L~~lP-~~l~~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~   96 (305)
T d1xkua_          22 LEKVP-KDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE   96 (305)
T ss_dssp             CCSCC-CSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             CCccC-CCCCCCCCEEECcCCcCC----CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc
Confidence            44454 344688999999999886    35556799999999999999999966 5679999999999999999999997


Q ss_pred             hHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccC--CCCCccccCCcccceeecCCCCccchhhhCCCcc
Q 045751          230 SFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLP--AYPRNDCGSLENLNFISALHPRCCTPDILGRLPN  306 (492)
Q Consensus       230 ~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~--~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~  306 (492)
                      ..   ...++.|++.+|.+..++.. +.....+..++...+...  ...+..                      +..+++
T Consensus        97 ~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~----------------------~~~l~~  151 (305)
T d1xkua_          97 KM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----------------------FQGMKK  151 (305)
T ss_dssp             SC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG----------------------GGGCTT
T ss_pred             ch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc----------------------cccccc
Confidence            54   56899999999988777654 556666777766655321  112222                      344444


Q ss_pred             cceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEE-eecCCCCCCceEEEEecccCCCCCcccccCCCcc
Q 045751          307 LRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIV-LDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLL  385 (492)
Q Consensus       307 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~-l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L  385 (492)
                      |+.+++.+|.   ...++..  .+++|+.|+++++    ...... -.+..+ +.+++|++++|.+.+..+..+.++++|
T Consensus       152 L~~l~l~~n~---l~~l~~~--~~~~L~~L~l~~n----~~~~~~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         152 LSYIRIADTN---ITTIPQG--LPPSLTELHLDGN----KITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             CCEEECCSSC---CCSCCSS--CCTTCSEEECTTS----CCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cCccccccCC---ccccCcc--cCCccCEEECCCC----cCCCCChhHhhcc-ccccccccccccccccccccccccccc
Confidence            5555554441   1111111  1344555555421    111110 034555 677777777777766666677777888


Q ss_pred             CeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-------ccCccccccEEEEeecCC
Q 045751          386 QVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-------GTGAMPKLECLIIDPCAY  444 (492)
Q Consensus       386 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-------~~~~l~~L~~L~l~~c~~  444 (492)
                      ++|+|++|.++.  ++..+..+++|+.|++++| .++.++.       ....+++|+.|++.+|+.
T Consensus       222 ~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         222 RELHLNNNKLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eeeecccccccc--cccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            888888777654  2445667788888888877 5665532       134567788888888875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.5e-19  Score=165.67  Aligned_cols=200  Identities=18%  Similarity=0.084  Sum_probs=131.7

Q ss_pred             cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      +...+...+.+++.++.+|+.+.  +++++|+|++|.|+.+|...|.++++|++|+|++|.++.+|. ++.+++|++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEEC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccc
Confidence            44555666888888888887664  578999999999998887766899999999999998888875 678889999999


Q ss_pred             cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR  346 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  346 (492)
                      ++|.+.. .+..                      +..+++|+.|+++++.  .....+.                     
T Consensus        85 s~N~l~~-~~~~----------------------~~~l~~L~~L~l~~~~--~~~~~~~---------------------  118 (266)
T d1p9ag_          85 SHNQLQS-LPLL----------------------GQTLPALTVLDVSFNR--LTSLPLG---------------------  118 (266)
T ss_dssp             CSSCCSS-CCCC----------------------TTTCTTCCEEECCSSC--CCCCCSS---------------------
T ss_pred             ccccccc-cccc----------------------cccccccccccccccc--cceeecc---------------------
Confidence            8887642 2222                      4555566666666651  1111111                     


Q ss_pred             ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751          347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM  426 (492)
Q Consensus       347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  426 (492)
                            .+..+ .++++|++++|.+....+..+..+++|+.+++++|+++... +..+..+++|++|+|++| .++.+|.
T Consensus       119 ------~~~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~L~~lp~  189 (266)
T d1p9ag_         119 ------ALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQEN-SLYTIPK  189 (266)
T ss_dssp             ------TTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             ------ccccc-cccccccccccccceeccccccccccchhcccccccccccC-ccccccccccceeecccC-CCcccCh
Confidence                  12233 55666666666655555555556666666666666665432 333555666666666666 4566666


Q ss_pred             ccCccccccEEEEeecCC
Q 045751          427 GTGAMPKLECLIIDPCAY  444 (492)
Q Consensus       427 ~~~~l~~L~~L~l~~c~~  444 (492)
                      .+..+++|+.|++++|+.
T Consensus       190 ~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTCCCSEEECCSCCB
T ss_pred             hHCCCCCCCEEEecCCCC
Confidence            666666666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.4e-18  Score=159.62  Aligned_cols=218  Identities=17%  Similarity=0.105  Sum_probs=134.6

Q ss_pred             EEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccC
Q 045751          194 LDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       194 L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~  272 (492)
                      ++.+++.++.+|..+.  +++++|++++|.|+.+|...|.++++|++|+++++.+..++.. +..++.++.+....+...
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            3556666777776553  4677888888888877766557788888888887777666533 444555555544322211


Q ss_pred             CCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe
Q 045751          273 AYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL  352 (492)
Q Consensus       273 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l  352 (492)
                      ..                     ..+..++.+++|+.|++++|.  .....+.                           
T Consensus        94 ~~---------------------l~~~~~~~l~~L~~L~l~~n~--~~~~~~~---------------------------  123 (284)
T d1ozna_          94 RS---------------------VDPATFHGLGRLHTLHLDRCG--LQELGPG---------------------------  123 (284)
T ss_dssp             CC---------------------CCTTTTTTCTTCCEEECTTSC--CCCCCTT---------------------------
T ss_pred             cc---------------------ccchhhcccccCCEEecCCcc--ccccccc---------------------------
Confidence            11                     111125566666666666651  1111111                           


Q ss_pred             ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCcc
Q 045751          353 DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAM  431 (492)
Q Consensus       353 ~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l  431 (492)
                      .+..+ ++|+.+++++|.+....+..+..+++|+.|++++|.+.... +..+.++++|+.+.+++| .+..+ |..+..+
T Consensus       124 ~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l  200 (284)
T d1ozna_         124 LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDL  200 (284)
T ss_dssp             TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred             ccchh-cccchhhhccccccccChhHhccccchhhcccccCcccccc-hhhhccccccchhhhhhc-cccccChhHhhhh
Confidence            12233 66677777777766555566777777777777777765422 344566777777777776 44444 4557777


Q ss_pred             ccccEEEEeecCCcCccchhccCCCCCcEEEecCC
Q 045751          432 PKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRP  466 (492)
Q Consensus       432 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c  466 (492)
                      ++|+.|++++|...+..|..+.++++|++|+++++
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccCEEEecCC
Confidence            77778887777766555566777777888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-18  Score=161.58  Aligned_cols=198  Identities=19%  Similarity=0.191  Sum_probs=116.4

Q ss_pred             CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC-cccch-HHHhhccccccccc
Q 045751          189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHT-ADVFWEMNKLRHLN  265 (492)
Q Consensus       189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~l-p~~~~~l~~L~~L~  265 (492)
                      +.+++|+|++|.|+.+| ..|..+++|++|+++++.+..++...|..+..++.++...+ .+..+ |..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            34667777777777665 35677777777777777777666666566777777766544 55555 33466777777777


Q ss_pred             ccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCC
Q 045751          266 FGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESK  343 (492)
Q Consensus       266 L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  343 (492)
                      +++|.+....+..+...++|+.+++.+  ....++..+..+++|+.|++++|                            
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N----------------------------  163 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN----------------------------  163 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----------------------------
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC----------------------------
Confidence            777765433333333333344443331  11122222444445555555554                            


Q ss_pred             CCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751          344 MPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       344 ~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                        +++.+.- .+.++ ++|+++++++|.+.+..+..+.++++|+.|++++|.+.+.. +..++.+++|++|++++|
T Consensus       164 --~l~~l~~~~f~~l-~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         164 --RISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             --CCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSS
T ss_pred             --cccccchhhhccc-cccchhhhhhccccccChhHhhhhhhccccccccccccccc-ccccccccccCEEEecCC
Confidence              1222211 34455 66777777777766666667777777777777777766543 344566777777777776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-17  Score=152.83  Aligned_cols=197  Identities=22%  Similarity=0.196  Sum_probs=156.4

Q ss_pred             cccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCccccCCccccee
Q 045751          210 NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFI  288 (492)
Q Consensus       210 ~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l  288 (492)
                      +...+...+.++++++.+|+.+ .  +++++|+|++|.++.+|. .+.++++|++|+|++|.+. .+|            
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l-p--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~------------   71 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ------------   71 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE------------
T ss_pred             ccCCCeEEEccCCCCCeeCcCc-C--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc------------
Confidence            3455666788899999999876 3  689999999999988874 5889999999999998763 111            


Q ss_pred             ecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEec
Q 045751          289 SALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSN  368 (492)
Q Consensus       289 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~  368 (492)
                                . ++.+++|+.|++++|.  .. ..+.                           .+..+ ++|+.|++++
T Consensus        72 ----------~-~~~l~~L~~L~Ls~N~--l~-~~~~---------------------------~~~~l-~~L~~L~l~~  109 (266)
T d1p9ag_          72 ----------V-DGTLPVLGTLDLSHNQ--LQ-SLPL---------------------------LGQTL-PALTVLDVSF  109 (266)
T ss_dssp             ----------C-CSCCTTCCEEECCSSC--CS-SCCC---------------------------CTTTC-TTCCEEECCS
T ss_pred             ----------c-cccccccccccccccc--cc-cccc---------------------------ccccc-cccccccccc
Confidence                      1 5567788888888872  11 1111                           34455 7888899988


Q ss_pred             ccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCc
Q 045751          369 TELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKR  447 (492)
Q Consensus       369 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~  447 (492)
                      |.+.......+..+++++.|++++|.+.... ...+..+++|+.|++++| .++.++. .++.+++|+.|++++|. ++.
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~  186 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYT  186 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             cccceeeccccccccccccccccccccceec-cccccccccchhcccccc-cccccCccccccccccceeecccCC-Ccc
Confidence            8887777778889999999999999887543 455678999999999998 7777764 47889999999999998 558


Q ss_pred             cchhccCCCCCcEEEecCCC
Q 045751          448 LPKQLWSVKRFKKLELWRPQ  467 (492)
Q Consensus       448 lp~~l~~l~~L~~L~l~~c~  467 (492)
                      +|.++..+++|+.|+++|+|
T Consensus       187 lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCC
T ss_pred             cChhHCCCCCCCEEEecCCC
Confidence            99999999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.5e-16  Score=152.76  Aligned_cols=132  Identities=20%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             CeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEc
Q 045751          140 MIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKL  219 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l  219 (492)
                      ++++|.+..++...++  ...++|++|++++|.+..    + +   ..+.+|+.|++++|.++.++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp--~~~~~L~~L~Ls~N~l~~----l-p---~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLP--ELPPHLESLVASCNSLTE----L-P---ELPQSLKSLLVDNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCC--SCCTTCSEEECCSSCCSS----C-C---CCCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCC--CCCCCCCEEECCCCCCcc----c-c---cchhhhhhhhhhhcccchhhhh---ccccccccc
Confidence            4566777655555443  235677777777776651    1 1   2245677777777776655431   135777777


Q ss_pred             cCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751          220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL  291 (492)
Q Consensus       220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~  291 (492)
                      ++|.+..+|. . +.+++|++|+++++.+...|...   ..+..+.+..+..  ..+..+..++.++.+.+.
T Consensus       106 ~~n~l~~lp~-~-~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         106 SNNQLEKLPE-L-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL--EELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CSSCCSSCCC-C-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC--SSCCCCTTCTTCCEEECC
T ss_pred             cccccccccc-h-hhhccceeecccccccccccccc---ccccchhhccccc--cccccccccccceecccc
Confidence            7777777764 3 57777777777777665554322   3334444433322  222334445555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.2e-16  Score=140.08  Aligned_cols=60  Identities=17%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             ccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccccc
Q 045751          209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       209 ~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~  271 (492)
                      ..+.+|++|++.+|.|++++ .+ +.+++|++|++++|.+..++. +..+++|+.+++++|.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred             HHcCCcCEEECCCCCCCcch-hH-hcCCCCcEeecCCceeecccc-ccccccccccccccccc
Confidence            44556666666666666553 34 566666666666665555543 55566666665555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.1e-15  Score=137.24  Aligned_cols=80  Identities=11%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      .+.+|+.|++.+|.++.++ .+..+++|++|++++|.+..+++ + ..+++|+.+++++|.++.++. +..+++|+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l-~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVSA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-c-ccccccccccccccccccccc-cccccccccccc
Confidence            3455666666666666553 36666666666666666665543 3 566666666666665555542 455555555555


Q ss_pred             cccc
Q 045751          267 GLFT  270 (492)
Q Consensus       267 ~~~~  270 (492)
                      +++.
T Consensus       115 ~~~~  118 (227)
T d1h6ua2         115 TSTQ  118 (227)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            4443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.6e-17  Score=149.39  Aligned_cols=225  Identities=17%  Similarity=0.157  Sum_probs=122.0

Q ss_pred             eEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCc-cCchhHHhcCCCccEEe
Q 045751          164 HSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLD  242 (492)
Q Consensus       164 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~  242 (492)
                      ++++++++...   .......+..  .+..+.++...+...........+|++|+++++.+. .....++..+++|++|+
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~--~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHT--TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCC---chHHHHHHhc--cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            35666665543   2222222221  233455555444322222334557777777777665 22233347777777777


Q ss_pred             cCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchh
Q 045751          243 MPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS  321 (492)
Q Consensus       243 L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  321 (492)
                      +++|.+. ..+..+.++++|++|++++|...                    ....+......+++|++|++++|......
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~i--------------------td~~l~~l~~~~~~L~~L~ls~c~~~~~~  137 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF--------------------SEFALQTLLSSCSRLDELNLSWCFDFTEK  137 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSC--------------------CHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccc--------------------cccccchhhHHHHhccccccccccccccc
Confidence            7777553 34455667777777777665311                    11112221456788888888887422334


Q ss_pred             hHHHHhhc-CCCCCeEEeecCCCCC-CccEEEe--ecCCCCCCceEEEEeccc-CCCCCcccccCCCccCeEEEeccc-c
Q 045751          322 LLSKSLYK-LSSLESLKLVNESKMP-RLSKIVL--DEYQFPPSLTHLSFSNTE-LMEDPMPTLEKLPLLQVLKLKKNS-Y  395 (492)
Q Consensus       322 ~~~~~l~~-l~~L~~L~l~~~~~~~-~L~~L~l--~~~~lp~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~~~-~  395 (492)
                      .+...+.. +++|+.|++++   +. .+..-.+  ....+ ++|++|++++|. +++..+..+.++++|++|++++|. +
T Consensus       138 ~~~~~~~~~~~~L~~L~l~~---~~~~i~~~~l~~l~~~~-~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         138 HVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             HHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             cchhhhcccccccchhhhcc---ccccccccccccccccc-ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            44444444 36777777763   21 2211111  12345 677777777664 455555666677777777777653 4


Q ss_pred             CCCcccccCCCCccccEEeeccc
Q 045751          396 LGRKLTCGSHGFPKLKVLHLKSM  418 (492)
Q Consensus       396 ~~~~~~~~~~~~~~L~~L~l~~~  418 (492)
                      ++.. ...++.+|+|+.|++.+|
T Consensus       214 ~~~~-l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         214 IPET-LLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGG-GGGGGGCTTCCEEECTTS
T ss_pred             ChHH-HHHHhcCCCCCEEeeeCC
Confidence            3333 223455677777777766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-16  Score=146.11  Aligned_cols=239  Identities=18%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             EEEecCCcCCCCchhhccc--cccCEEEccCCCCccCchhHHhcCCCccEEecCCCccc--chHHHhhcccccccccccc
Q 045751          193 VLDLGSLVLSQLPSGIENL--FFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH--HTADVFWEMNKLRHLNFGL  268 (492)
Q Consensus       193 ~L~L~~~~l~~l~~~~~~l--~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~  268 (492)
                      .||++++.+.  |+.++.+  .....+.++.+.+....... ....+|++||+++|.+.  .++..+.++++|++|++++
T Consensus         4 ~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~-~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCC--chHHHHHHhccceEeeccccccccchhhh-ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5667666543  2222211  12344444444333222222 35566777777777542  3445566677777777776


Q ss_pred             cccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751          269 FTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS  348 (492)
Q Consensus       269 ~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~  348 (492)
                      |.+..                     ..+.. ++.+++|++|++++|..-....+......+++|++|++++   |.++.
T Consensus        81 ~~l~~---------------------~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~---c~~~~  135 (284)
T d2astb2          81 LRLSD---------------------PIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW---CFDFT  135 (284)
T ss_dssp             CBCCH---------------------HHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC---CTTCC
T ss_pred             cCCCc---------------------HHHHH-HhcCCCCcCccccccccccccccchhhHHHHhcccccccc---ccccc
Confidence            65421                     12222 5566667777776653222233444455667777777763   54443


Q ss_pred             EEEe--ecCCCCCCceEEEEeccc--CCCCCccc-ccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce
Q 045751          349 KIVL--DEYQFPPSLTHLSFSNTE--LMEDPMPT-LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE  423 (492)
Q Consensus       349 ~L~l--~~~~lp~~L~~L~L~~~~--l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  423 (492)
                      .-.+  .+...+++|+.|++++|.  +++..... ..++|+|+.|++++|..........+..+++|++|++++|..++.
T Consensus       136 ~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            2111  122222667777777653  22222222 245677777777765432222233445667777777777766552


Q ss_pred             E-EEccCccccccEEEEeecCCcCccchhccCCCCCc
Q 045751          424 W-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFK  459 (492)
Q Consensus       424 l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  459 (492)
                      - ...++.+|+|+.|++.+|-.-..++.....+|+|+
T Consensus       216 ~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             HHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            2 22355677777777777632223333334455544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=6.4e-15  Score=130.41  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=39.8

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF  269 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~  269 (492)
                      .|+.|++++|.++.++. +..+++|++|++++|.++.+++ + +.+++|++|++++|.++.+|. +..+++|+.|++++|
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~-~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc-c-ccCcccccccccccccccccc-ccccccccccccccc
Confidence            44555555555554432 4555555555555555555442 3 455555555555555555542 445555555555444


Q ss_pred             c
Q 045751          270 T  270 (492)
Q Consensus       270 ~  270 (492)
                      .
T Consensus       123 ~  123 (210)
T d1h6ta2         123 G  123 (210)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=1.6e-14  Score=138.17  Aligned_cols=136  Identities=18%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ..+++.|+++++....     .+   ...++|++|++++|.++.+|+.+   .+|+.|++++|.++.++. +   .+.|+
T Consensus        37 ~~~l~~LdLs~~~L~~-----lp---~~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-l---p~~L~  101 (353)
T d1jl5a_          37 DRQAHELELNNLGLSS-----LP---ELPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-L---PPLLE  101 (353)
T ss_dssp             HHTCSEEECTTSCCSC-----CC---SCCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-C---CTTCC
T ss_pred             HcCCCEEEeCCCCCCC-----CC---CCCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-h---ccccc
Confidence            3578999999988762     22   23578999999999999998754   478999999999887763 2   24699


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeecc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDL  316 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~  316 (492)
                      +|++++|.+..+|. ++.+++|++|+++++.+. ..|...   ..+..+.+.. ....... +..++.++.+.+.++.
T Consensus       102 ~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~---~~l~~l~~~~~~~~~~~~-l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc-hhhhccceeecccccccc-cccccc---ccccchhhcccccccccc-ccccccceeccccccc
Confidence            99999999988885 688999999999988774 333333   3344444442 2222333 6777888888887763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.2e-14  Score=127.62  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=25.6

Q ss_pred             ccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccc
Q 045751          211 LFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFT  270 (492)
Q Consensus       211 l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~  270 (492)
                      +.++++|+++++.+.+++ .+ +.+++|++|++++|.++.++. ++++++|++|++++|.
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCCCCCCcc-cc-ccCCCcCcCccccccccCccc-ccCCcccccccccccc
Confidence            344444444444444442 23 444444444444444444432 4444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1e-14  Score=129.15  Aligned_cols=163  Identities=20%  Similarity=0.203  Sum_probs=108.4

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      +..|+.|++.++.+..    .  ..+..+++|++|++++|.++.++. ++.+++|++|++++|+++.+|. + ..+++|+
T Consensus        45 L~~L~~L~l~~~~i~~----l--~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~-l-~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred             hcCccEEECcCCCCCC----c--hhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccc-c-ccccccc
Confidence            4566777777766641    1  135677788888888887776664 5677788888888888777763 4 6788888


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      .|++++|.+..++. +..+++++.+++++|.+.+  +..+..+++|+.+++++ ....++. +..+++|++|++++|.  
T Consensus       116 ~L~l~~~~~~~~~~-l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~--  189 (210)
T d1h6ta2         116 SLSLEHNGISDING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH--  189 (210)
T ss_dssp             EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--
T ss_pred             cccccccccccccc-ccccccccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECCCCC--
Confidence            88888877666653 6777778888777776643  23344566666666653 2223444 6777788888887772  


Q ss_pred             chhhHHHHhhcCCCCCeEEee
Q 045751          319 NQSLLSKSLYKLSSLESLKLV  339 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L~l~  339 (492)
                       ...++ .+.++++|+.|+++
T Consensus       190 -i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 -ISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -CCBCG-GGTTCTTCSEEEEE
T ss_pred             -CCCCh-hhcCCCCCCEEEcc
Confidence             22333 46677777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-16  Score=153.58  Aligned_cols=325  Identities=14%  Similarity=0.062  Sum_probs=180.0

Q ss_pred             CeeEEEEecCCCCccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhc-c
Q 045751          140 MIKRLTANVNLSELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIE-N  210 (492)
Q Consensus       140 ~~r~lsl~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~-~  210 (492)
                      +++.|.+.++.+.+......   ++++++|.+.+|.+...........+..+++|++|+|++|.++.     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46777887776666543333   78888888888876521122445667788888888888887751     222222 2


Q ss_pred             ccccCEEEccCCCCcc-----CchhHHhcCCCccEEecCCCcccchH-----HHhh------------------------
Q 045751          211 LFFLRYLKLNIPSLKS-----LPSSFLSSISNLYTLDMPFSYIHHTA-----DVFW------------------------  256 (492)
Q Consensus       211 l~~L~~L~l~~~~i~~-----lp~~~~~~l~~L~~L~L~~~~l~~lp-----~~~~------------------------  256 (492)
                      ..+|++|++++|.++.     ++..+ ..+++|++|++++|.+....     ..+.                        
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l-~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchh-hccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3468888888888763     33344 67888888888888654321     1111                        


Q ss_pred             -----cccccccccccccccCCC----CCccccC-CcccceeecCCCCcc------chhhhCCCcccceEEeeeccCc--
Q 045751          257 -----EMNKLRHLNFGLFTLPAY----PRNDCGS-LENLNFISALHPRCC------TPDILGRLPNLRKLRIHGDLSN--  318 (492)
Q Consensus       257 -----~l~~L~~L~L~~~~~~~~----~p~~~~~-l~~L~~l~~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~--  318 (492)
                           ....++.++++++.....    ....+.. -.....+........      ....+...+.++.+.+.++...  
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence                 111122222221111000    0000000 001112222210000      1111344566677777666310  


Q ss_pred             -chhhHHHHhhcCCCCCeEEeecCC--------------CCCCccEEEe---------------ecC-CCCCCceEEEEe
Q 045751          319 -NQSLLSKSLYKLSSLESLKLVNES--------------KMPRLSKIVL---------------DEY-QFPPSLTHLSFS  367 (492)
Q Consensus       319 -~~~~~~~~l~~l~~L~~L~l~~~~--------------~~~~L~~L~l---------------~~~-~lp~~L~~L~L~  367 (492)
                       ..............++.++++++.              ..+.++.+.+               .+. .. ..|+.++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~-~~L~~l~l~  320 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG-CQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT-CCCCEEECT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccc-ccccccccc
Confidence             111223334445677777776522              3445555554               111 23 578899999


Q ss_pred             cccCCCCCcccc----cCCCccCeEEEeccccCCCcccc---c-CCCCccccEEeecccCCcce-----EEEccCccccc
Q 045751          368 NTELMEDPMPTL----EKLPLLQVLKLKKNSYLGRKLTC---G-SHGFPKLKVLHLKSMLWLEE-----WTMGTGAMPKL  434 (492)
Q Consensus       368 ~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~---~-~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L  434 (492)
                      +|.+.......+    ...++|++|+|++|.+.+.....   . ....+.|+.|++++| .++.     ++..+..+++|
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L  399 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSL  399 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCC
Confidence            888765544433    35678999999988876543211   1 234677999999998 5652     33345567899


Q ss_pred             cEEEEeecCCcCc----cchhcc-CCCCCcEEEecCCC
Q 045751          435 ECLIIDPCAYLKR----LPKQLW-SVKRFKKLELWRPQ  467 (492)
Q Consensus       435 ~~L~l~~c~~l~~----lp~~l~-~l~~L~~L~l~~c~  467 (492)
                      +.|++++|+....    +...+. +...|+.|++.++.
T Consensus       400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            9999999875432    233343 44579999998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=4.1e-14  Score=124.03  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=101.0

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ++++++|+++++.+..    .  ..++.+++|++|++++|.++.+++ ++++++|++|++++|.+..++. + +++++|+
T Consensus        39 l~~l~~L~l~~~~i~~----l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l-~~l~~L~  109 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT  109 (199)
T ss_dssp             HTTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCS
T ss_pred             hcCCCEEECCCCCCCC----c--cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-c-ccccccc
Confidence            5667777777766651    1  235667777777777777776654 6777777777777777776664 4 6777777


Q ss_pred             EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751          240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN  318 (492)
Q Consensus       240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~  318 (492)
                      .|++++|....++. +..+++|+.|++++|.+.. + +.+..+++|+.+++.+ ....++. ++++++|++|++++|.  
T Consensus       110 ~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~--  183 (199)
T d2omxa2         110 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNK--  183 (199)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--
T ss_pred             cccccccccccccc-cchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCcc-ccCCCCCCEEECCCCC--
Confidence            77777776555543 6667777777777776532 2 2455566666666653 2233344 6777777777777772  


Q ss_pred             chhhHHHHhhcCCCCCeE
Q 045751          319 NQSLLSKSLYKLSSLESL  336 (492)
Q Consensus       319 ~~~~~~~~l~~l~~L~~L  336 (492)
                      . ..++ .++++++|+.|
T Consensus       184 i-~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 V-SDIS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CCCG-GGGGCTTCSEE
T ss_pred             C-CCCc-cccCCCCCCcC
Confidence            2 2222 35566666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-14  Score=129.00  Aligned_cols=75  Identities=17%  Similarity=0.277  Sum_probs=45.5

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc-hH-HHhhcccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TA-DVFWEMNKLRHLNFGL  268 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~-lp-~~~~~l~~L~~L~L~~  268 (492)
                      ++++.++..++.+|..+.  +++++|++++|.|+.+|...|.++++|++|++++|.+.. ++ ..+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            455666666666665442  366777777777777766555677777777777775433 22 2255566666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-14  Score=127.88  Aligned_cols=217  Identities=17%  Similarity=0.126  Sum_probs=122.0

Q ss_pred             cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCc-cccCCcccceeecC
Q 045751          214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISAL  291 (492)
Q Consensus       214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~  291 (492)
                      .+.++.++..++++|+.++   +++++|++++|.++.+|.. |.++++|++|++++|.+...++. .+..++.+..+.+.
T Consensus        10 ~~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4788888999999998772   5899999999999999864 78999999999999987665543 34456666665543


Q ss_pred             C---CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEec
Q 045751          292 H---PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSN  368 (492)
Q Consensus       292 ~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~  368 (492)
                      .   .....+..+..+++|+.++++++.  .. ..+ ....+.                        .+ +.+..+...+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~--l~-~~~-~~~~~~------------------------~l-~~l~~~~~~n  137 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTG--IK-HLP-DVHKIH------------------------SL-QKVLLDIQDN  137 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCC--CC-SCC-CCTTTC------------------------BS-SCEEEEEESC
T ss_pred             ccccccccccccccccccccccccchhh--hc-ccc-cccccc------------------------cc-cccccccccc
Confidence            1   222223335666666666666652  11 110 011111                        22 3333333333


Q ss_pred             ccCCCCCcccccCCC-ccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cCccccccEEEEeecCCcC
Q 045751          369 TELMEDPMPTLEKLP-LLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPKLECLIIDPCAYLK  446 (492)
Q Consensus       369 ~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~  446 (492)
                      +.+.......+.+++ .++.|++.+|.+...  .......++++.+....+..++.+|.. +..+++|+.|++++|... 
T Consensus       138 ~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i--~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-  214 (242)
T d1xwdc1         138 INIHTIERNSFVGLSFESVILWLNKNGIQEI--HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-  214 (242)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-
T ss_pred             cccccccccccccccccceeeeccccccccc--ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-
Confidence            333333333333333 555666665555421  222223344444443333356666543 466666677766666533 


Q ss_pred             ccch-hccCCCCCcEEEecC
Q 045751          447 RLPK-QLWSVKRFKKLELWR  465 (492)
Q Consensus       447 ~lp~-~l~~l~~L~~L~l~~  465 (492)
                      .+|. .+.++++|+.+++.+
T Consensus       215 ~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCSSSCTTCCEEESSSEES
T ss_pred             ccCHHHHcCCcccccCcCCC
Confidence            4443 355555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=111.00  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccccc
Q 045751          192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTL  271 (492)
Q Consensus       192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~  271 (492)
                      |+|++++|.++.++. ++.+++|++|++++|.++.+|+.+ +.+++|++|++++|.++.+|. +..+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhh-hhhhcccccccccccccccCc-cccccccCeEECCCCcc
Confidence            567777777776654 677777777888777777777766 777778888887777777764 77777777777777766


Q ss_pred             C
Q 045751          272 P  272 (492)
Q Consensus       272 ~  272 (492)
                      .
T Consensus        78 ~   78 (124)
T d1dcea3          78 Q   78 (124)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=116.76  Aligned_cols=85  Identities=16%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccc
Q 045751          185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRH  263 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~  263 (492)
                      +.++..+|+|+|++|.|+.++..+..+++|++|++++|.|.+++ .+ ..+++|++|++++|.+..+|.. +..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~-~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-Cc-ccCcchhhhhcccccccCCCcccccccccccc
Confidence            34556677777777777766655566677777777777777664 34 6677777777777776666544 345677777


Q ss_pred             cccccccc
Q 045751          264 LNFGLFTL  271 (492)
Q Consensus       264 L~L~~~~~  271 (492)
                      |++++|.+
T Consensus        92 L~L~~N~i   99 (162)
T d1a9na_          92 LILTNNSL   99 (162)
T ss_dssp             EECCSCCC
T ss_pred             ceeccccc
Confidence            77777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.5e-14  Score=118.05  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=91.2

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY  239 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~  239 (492)
                      ..++|.|++++|.+.     ..+..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|+.+|..+++|+
T Consensus        17 ~~~lr~L~L~~n~I~-----~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             TTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcEEECCCCCCC-----ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            678899999999887     22355678899999999999998775 488899999999999999999888768899999


Q ss_pred             EEecCCCcccchHH--HhhcccccccccccccccC
Q 045751          240 TLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       240 ~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~  272 (492)
                      +|++++|.+..++.  .+..+++|++|++++|.+.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            99999998887764  4788899999999998763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.8e-13  Score=109.67  Aligned_cols=101  Identities=18%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             eEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEec
Q 045751          164 HSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDM  243 (492)
Q Consensus       164 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L  243 (492)
                      |+|++++|.+..     . ..+.++++|++|++++|.++.+|+.++.+++|++|++++|.|+.+|. + +++++|++|++
T Consensus         1 R~L~Ls~n~l~~-----l-~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-----L-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-ANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-----C-CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-----C-cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-c-ccccccCeEEC
Confidence            678999998862     2 24789999999999999999999889999999999999999999975 6 89999999999


Q ss_pred             CCCcccchH--HHhhcccccccccccccccC
Q 045751          244 PFSYIHHTA--DVFWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       244 ~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~  272 (492)
                      ++|.+..+|  ..++.+++|+.|++++|.+.
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            999888776  35888999999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-13  Score=134.63  Aligned_cols=302  Identities=17%  Similarity=0.126  Sum_probs=183.9

Q ss_pred             CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cchh
Q 045751          161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LPSS  230 (492)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~  230 (492)
                      ++|++|+++++.+.   ...+...+..++++++|+|++|.++     .+...+..+++|++|++++|.|+.     +...
T Consensus         2 ~~l~~ld~~~~~i~---~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCC---hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            47899999999986   4455677888999999999999987     445667889999999999999873     2222


Q ss_pred             HHhcCCCccEEecCCCcccc-----hHHHhhcccccccccccccccCCCCCcc----ccC-CcccceeecCCCCc-----
Q 045751          231 FLSSISNLYTLDMPFSYIHH-----TADVFWEMNKLRHLNFGLFTLPAYPRND----CGS-LENLNFISALHPRC-----  295 (492)
Q Consensus       231 ~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~~p~~----~~~-l~~L~~l~~~~~~~-----  295 (492)
                      +.....+|++|++++|.++.     ++..+..+++|++|++++|.+.......    +.. ..............     
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence            21123579999999997743     5666888999999999999864321111    111 11122222221100     


Q ss_pred             -cchhhhCCCcccceEEeeeccCcc-------------------------------hhhHHHHhhcCCCCCeEEeecCC-
Q 045751          296 -CTPDILGRLPNLRKLRIHGDLSNN-------------------------------QSLLSKSLYKLSSLESLKLVNES-  342 (492)
Q Consensus       296 -~~~~~l~~l~~L~~L~l~~~~~~~-------------------------------~~~~~~~l~~l~~L~~L~l~~~~-  342 (492)
                       .....+.....++.+.++++....                               .......+...+.++.+++.+.. 
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence             111114445566677666552000                               01111223334444455444311 


Q ss_pred             --------------CCCCccEEEe---------------ecCCCCCCceEEEEecccCCCCCcccc-----cCCCccCeE
Q 045751          343 --------------KMPRLSKIVL---------------DEYQFPPSLTHLSFSNTELMEDPMPTL-----EKLPLLQVL  388 (492)
Q Consensus       343 --------------~~~~L~~L~l---------------~~~~lp~~L~~L~L~~~~l~~~~~~~l-----~~l~~L~~L  388 (492)
                                    ....++.+++               .+... +.++.+++++|.+.+.....+     ...+.|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccchhhccccccccccccccccccccccccccccccccccc-ccccccccccccccccccchhhccccccccccccc
Confidence                          3445555554               12234 556666666665533222211     134578888


Q ss_pred             EEeccccCCCccc---ccCCCCccccEEeecccCCcce-----EEEcc-CccccccEEEEeecCCcC----ccchhccCC
Q 045751          389 KLKKNSYLGRKLT---CGSHGFPKLKVLHLKSMLWLEE-----WTMGT-GAMPKLECLIIDPCAYLK----RLPKQLWSV  455 (492)
Q Consensus       389 ~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~----~lp~~l~~l  455 (492)
                      ++++|.++.....   ......++|++|+|++| .++.     ++..+ ...+.|+.|++++|....    .++..+..+
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  396 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  396 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence            8887776554321   11234568999999998 4542     22223 346779999999997643    355667788


Q ss_pred             CCCcEEEecCCC
Q 045751          456 KRFKKLELWRPQ  467 (492)
Q Consensus       456 ~~L~~L~l~~c~  467 (492)
                      ++|++|+|++++
T Consensus       397 ~~L~~L~Ls~N~  408 (460)
T d1z7xw1         397 HSLRELDLSNNC  408 (460)
T ss_dssp             CCCCEEECCSSS
T ss_pred             CCCCEEECCCCc
Confidence            999999999986

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.4e-12  Score=113.30  Aligned_cols=110  Identities=20%  Similarity=0.237  Sum_probs=73.1

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL  238 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L  238 (492)
                      .+++++|++++|.+.   .......|.++++|+.|++++|.+..+ +..+..+++|++|++++|++..+|+..|.++++|
T Consensus        28 p~~l~~L~Ls~N~i~---~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          28 PLHTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             CTTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred             CCCCCEEEeCCCCCc---ccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcc
Confidence            466777777777664   113345566777777777777776633 3556667777777777777777766666777777


Q ss_pred             cEEecCCCcccchHHH-hhcccccccccccccccC
Q 045751          239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLP  272 (492)
Q Consensus       239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~  272 (492)
                      ++|+|++|.++.+|.. +..+++|++|+|++|.+.
T Consensus       105 ~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7777777777666543 566777777777766553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.6e-13  Score=118.37  Aligned_cols=111  Identities=17%  Similarity=0.181  Sum_probs=84.2

Q ss_pred             HHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccc
Q 045751          181 CEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNK  260 (492)
Q Consensus       181 ~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~  260 (492)
                      .+..+..+++|++|+|++|.|+.++ .+..+++|++|++++|.|..+|... ..+++|++|++++|.++.++. +..+++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~-~~~~~L~~L~l~~N~i~~l~~-~~~l~~  116 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLSG-IEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHH-HHHHHCCEEECSEEECCCHHH-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccc-ccccccccccccccccccccc-cccccc
Confidence            3456778888888888888888775 4788888888888888888887655 667788888888888887754 788888


Q ss_pred             cccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          261 LRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       261 L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      |+.|++++|.+.. ++                   .+.. ++.+++|+.|++++|
T Consensus       117 L~~L~L~~N~i~~-~~-------------------~~~~-l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         117 LRVLYMSNNKITN-WG-------------------EIDK-LAALDKLEDLLLAGN  150 (198)
T ss_dssp             SSEEEESEEECCC-HH-------------------HHHH-HTTTTTCSEEEECSS
T ss_pred             ccccccccchhcc-cc-------------------cccc-ccCCCccceeecCCC
Confidence            8888888887631 10                   1122 677788888888877

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=8.7e-12  Score=108.18  Aligned_cols=139  Identities=14%  Similarity=0.036  Sum_probs=109.6

Q ss_pred             CCCCeeEEEEecCCCCc-cccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhcccc
Q 045751          137 SRKMIKRLTANVNLSEL-DSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLF  212 (492)
Q Consensus       137 ~~~~~r~lsl~~~~~~~-~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~  212 (492)
                      .+..+++|.+..+.+.. .....+  .++|+.|++++|.+.    ......|..+++|++|+|++|.++.+| ..|.+++
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~----~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc----cccccccccccccceeeeccccccccCHHHHhCCC
Confidence            45789999999888865 444555  899999999999886    366788999999999999999999776 5689999


Q ss_pred             ccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccc
Q 045751          213 FLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDC  279 (492)
Q Consensus       213 ~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~  279 (492)
                      +|++|+|++|.|+.+|+..|..+++|++|+|++|.+...+....-...++.+.+..+.+....|..+
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l  169 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV  169 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT
T ss_pred             cccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhh
Confidence            9999999999999999988899999999999999765433222222345566666666555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=1.9e-12  Score=123.48  Aligned_cols=137  Identities=17%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             CcccceEEeeecc--CcchhhHHHHhhcCCCCCeEEeecCCCCCCccEE------EeecCCCCCCceEEEEecccCCCC-
Q 045751          304 LPNLRKLRIHGDL--SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKI------VLDEYQFPPSLTHLSFSNTELMED-  374 (492)
Q Consensus       304 l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L------~l~~~~lp~~L~~L~L~~~~l~~~-  374 (492)
                      .+.|+.+.++++.  ......+...+...++|+.|+++++    .+..-      .-.+..+ ++|+.|++++|.+... 
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n----~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g  231 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLG  231 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccc----cccccccccchhhhhcch-hhhcccccccccccccc
Confidence            3445555555442  1122334444555556666665531    11100      0023445 7788888888776432 


Q ss_pred             ---CcccccCCCccCeEEEeccccCCCccccc-----CCCCccccEEeecccCCcce-----EEEcc-CccccccEEEEe
Q 045751          375 ---PMPTLEKLPLLQVLKLKKNSYLGRKLTCG-----SHGFPKLKVLHLKSMLWLEE-----WTMGT-GAMPKLECLIID  440 (492)
Q Consensus       375 ---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~  440 (492)
                         ....+..+++|++|++++|.+.+......     ....+.|+.|++++| .++.     +...+ ..+++|+.|+++
T Consensus       232 ~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             cccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECC
Confidence               22345678888888888888765432111     123567889999987 4442     22222 257789999998


Q ss_pred             ecCCcC
Q 045751          441 PCAYLK  446 (492)
Q Consensus       441 ~c~~l~  446 (492)
                      +|....
T Consensus       311 ~N~~~~  316 (344)
T d2ca6a1         311 GNRFSE  316 (344)
T ss_dssp             TSBSCT
T ss_pred             CCcCCC
Confidence            887543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=2.6e-11  Score=115.39  Aligned_cols=235  Identities=14%  Similarity=0.087  Sum_probs=117.5

Q ss_pred             CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----------CchhhccccccCEEEccCCCCcc--
Q 045751          160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----------LPSGIENLFFLRYLKLNIPSLKS--  226 (492)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----------l~~~~~~l~~L~~L~l~~~~i~~--  226 (492)
                      ...++.|++++|.+...........+...+.|+.|+++++....           +...+..+++|+.|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56677777777655411112344556667777777777664331           12234456677777777776653  


Q ss_pred             ---CchhHHhcCCCccEEecCCCcccch-----HHH---------hhcccccccccccccccCCCCCccccCCcccceee
Q 045751          227 ---LPSSFLSSISNLYTLDMPFSYIHHT-----ADV---------FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFIS  289 (492)
Q Consensus       227 ---lp~~~~~~l~~L~~L~L~~~~l~~l-----p~~---------~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~  289 (492)
                         +...+ ..+++|++|++++|.+..-     ...         ....+.|+.+++++|.+.....             
T Consensus       110 ~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~-------------  175 (344)
T d2ca6a1         110 QEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-------------  175 (344)
T ss_dssp             HHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-------------
T ss_pred             ccchhhhh-cccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc-------------
Confidence               33333 5667777777777754211     111         1223345555555544321100             


Q ss_pred             cCCCCccchhhhCCCcccceEEeeeccCcc---hhhHHHHhhcCCCCCeEEeecCCCCCCccE-----EEeecCCCCCCc
Q 045751          290 ALHPRCCTPDILGRLPNLRKLRIHGDLSNN---QSLLSKSLYKLSSLESLKLVNESKMPRLSK-----IVLDEYQFPPSL  361 (492)
Q Consensus       290 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~-----L~l~~~~lp~~L  361 (492)
                           ..+...+...+.|+.|++++|....   ...+...+..+++|+.|+++++.    +..     +.-.+..+ ++|
T Consensus       176 -----~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~----i~~~g~~~L~~~l~~~-~~L  245 (344)
T d2ca6a1         176 -----KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT----FTHLGSSALAIALKSW-PNL  245 (344)
T ss_dssp             -----HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC----CHHHHHHHHHHHGGGC-TTC
T ss_pred             -----ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc----cccccccccccccccc-ccc
Confidence                 0111113445556666665553110   11122334455566666665311    110     00033445 677


Q ss_pred             eEEEEecccCCCCCcccc----c--CCCccCeEEEeccccCCCcccc---cC-CCCccccEEeeccc
Q 045751          362 THLSFSNTELMEDPMPTL----E--KLPLLQVLKLKKNSYLGRKLTC---GS-HGFPKLKVLHLKSM  418 (492)
Q Consensus       362 ~~L~L~~~~l~~~~~~~l----~--~l~~L~~L~l~~~~~~~~~~~~---~~-~~~~~L~~L~l~~~  418 (492)
                      ++|++++|.+.+.....+    .  ..+.|+.|++++|.+....+..   .. ...++|++|++++|
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            777777777654433222    2  2356777777777765433111   11 24567777777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=8.6e-12  Score=108.52  Aligned_cols=122  Identities=19%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             CcEEEEEecCC--cCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751          189 KFLRVLDLGSL--VLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF  266 (492)
Q Consensus       189 ~~L~~L~L~~~--~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L  266 (492)
                      ..++.+++.+.  .+..++.++..+++|++|++++|.|+.++ .+ ..+++|++|++++|.++.+|.....+++|++|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l-~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CH-HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cc-cCCccccChhhccccccccccccccccccccccc
Confidence            33555666654  35677888888999999999999998886 45 8899999999999988888766666778999988


Q ss_pred             cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH--HHhhcCCCCCeEEee
Q 045751          267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS--KSLYKLSSLESLKLV  339 (492)
Q Consensus       267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~  339 (492)
                      ++|.+..                       ++. +..+++|+.|++++|.   ...++  ..+..+++|+.|+++
T Consensus       101 ~~N~i~~-----------------------l~~-~~~l~~L~~L~L~~N~---i~~~~~~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         101 SYNQIAS-----------------------LSG-IEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             SEEECCC-----------------------HHH-HHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSEEEEC
T ss_pred             ccccccc-----------------------ccc-ccccccccccccccch---hccccccccccCCCccceeecC
Confidence            8887631                       223 6778889999999982   22222  345555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.2e-10  Score=95.32  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             hccCCcEEEEEecCCc-CCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751          185 CKMFKFLRVLDLGSLV-LSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR  262 (492)
Q Consensus       185 ~~~~~~L~~L~L~~~~-l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~  262 (492)
                      +..+++|+.|+++++. ++.++ ..|..+++|+.|++++|+|+.+++..|..+++|++|+|++|.++.+|..+....+|+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence            4445555555554442 55443 345555555555555555555554444555555555555555555554444344455


Q ss_pred             ccccccccc
Q 045751          263 HLNFGLFTL  271 (492)
Q Consensus       263 ~L~L~~~~~  271 (492)
                      +|+|++|.+
T Consensus       107 ~L~L~~Np~  115 (156)
T d2ifga3         107 ELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCC
T ss_pred             ccccCCCcc
Confidence            555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5e-09  Score=86.84  Aligned_cols=88  Identities=18%  Similarity=0.037  Sum_probs=74.8

Q ss_pred             cEEEEEecCCcCCCCchhhccccccCEEEccCC-CCccCchhHHhcCCCccEEecCCCcccchH-HHhhccccccccccc
Q 045751          190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIP-SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFG  267 (492)
Q Consensus       190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~  267 (492)
                      ....++.+++.+...|..+..+++|+.|+++++ .++.++...|.++++|+.|++++|.++.++ ..|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345678888888888888999999999999766 599998877799999999999999999985 558999999999999


Q ss_pred             ccccCCCCCcc
Q 045751          268 LFTLPAYPRND  278 (492)
Q Consensus       268 ~~~~~~~~p~~  278 (492)
                      +|.+. .+|.+
T Consensus        89 ~N~l~-~l~~~   98 (156)
T d2ifga3          89 FNALE-SLSWK   98 (156)
T ss_dssp             SSCCS-CCCST
T ss_pred             CCCCc-ccChh
Confidence            99985 45544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.9e-08  Score=80.73  Aligned_cols=64  Identities=23%  Similarity=0.019  Sum_probs=30.8

Q ss_pred             HhccCCcEEEEEecCCcCCCC---chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc
Q 045751          184 ICKMFKFLRVLDLGSLVLSQL---PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY  247 (492)
Q Consensus       184 ~~~~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~  247 (492)
                      .+.++++|++|+|++|.++.+   +..+..+++|++|++++|.|+++++-.+....+|+.|++++|.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            334455555555555555533   2233445555555555555555444222333345555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.7e-07  Score=73.41  Aligned_cols=87  Identities=21%  Similarity=0.108  Sum_probs=63.8

Q ss_pred             CCchhhccccccCEEEccCCCCccCch--hHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCcc-
Q 045751          203 QLPSGIENLFFLRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRND-  278 (492)
Q Consensus       203 ~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~-  278 (492)
                      .++.....+++|++|++++|+|+.++.  ..+..+++|+.|++++|.++.+++. .....+|+.|++++|.+....... 
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            334444678999999999999997643  3338899999999999988887652 334457999999999886644432 


Q ss_pred             ------ccCCcccceee
Q 045751          279 ------CGSLENLNFIS  289 (492)
Q Consensus       279 ------~~~l~~L~~l~  289 (492)
                            +..+++|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                  33477777774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=7.5e-06  Score=67.90  Aligned_cols=86  Identities=15%  Similarity=0.018  Sum_probs=42.9

Q ss_pred             CCCeeEEEeecCC-CCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cc
Q 045751          160 NLYLHSLLCLSSE-SHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LP  228 (492)
Q Consensus       160 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp  228 (492)
                      .++|+.|+++++. +...........+...+.|+.|+|++|.++     .+...+...+.|+.|++++|.+..     +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            4556666665432 221011123344555666666666666654     222344445566666666666552     12


Q ss_pred             hhHHhcCCCccEEecCCC
Q 045751          229 SSFLSSISNLYTLDMPFS  246 (492)
Q Consensus       229 ~~~~~~l~~L~~L~L~~~  246 (492)
                      ..+ ...+.|++|++++|
T Consensus        94 ~aL-~~n~sL~~L~l~~n  110 (167)
T d1pgva_          94 RST-LVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHT-TTTCCCSEEECCCC
T ss_pred             HHH-HhCCcCCEEECCCC
Confidence            222 44455666666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.50  E-value=4.5e-05  Score=63.00  Aligned_cols=120  Identities=8%  Similarity=0.017  Sum_probs=80.6

Q ss_pred             hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcc
Q 045751          180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      .......+.+.|+.|+|+++ .++     .+-..+...++|++|++++|.+.     .+...+ ...+.|++|++++|.+
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L-~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhh-hhcccccceeeehhhc
Confidence            34455667899999999975 465     23456777889999999999887     233344 6788999999999966


Q ss_pred             cc-----hHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          249 HH-----TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       249 ~~-----lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                      +.     +-..+...++|++|++++|.....-..               ....+...+...++|+.|+++.+
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~---------------~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ---------------VEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH---------------HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH---------------HHHHHHHHHHhCCCccEeeCcCC
Confidence            43     445577778899999887754211000               00112222556677888887765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=5.1e-05  Score=62.58  Aligned_cols=108  Identities=11%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             CCCeeEEEeecC-CCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCc-----cCc
Q 045751          160 NLYLHSLLCLSS-ESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLK-----SLP  228 (492)
Q Consensus       160 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp  228 (492)
                      .+.|+.|.+++. .+...........+...++|+.|++++|.++     .+-..+...+.++.++++++.+.     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            455666666542 2221111124444556666666666666654     22234445556666666666554     122


Q ss_pred             hhHHhcCCCccEEecC--CCccc-----chHHHhhcccccccccccc
Q 045751          229 SSFLSSISNLYTLDMP--FSYIH-----HTADVFWEMNKLRHLNFGL  268 (492)
Q Consensus       229 ~~~~~~l~~L~~L~L~--~~~l~-----~lp~~~~~l~~L~~L~L~~  268 (492)
                      ..+ ...++|+.++|+  +|.++     .+...+...++|+.|+++.
T Consensus        96 ~~l-~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          96 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHH-HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            233 455556654443  22332     2334455555566665543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.38  E-value=3.2e-05  Score=69.68  Aligned_cols=30  Identities=7%  Similarity=-0.045  Sum_probs=27.8

Q ss_pred             hHHHHHHhhcccCChhhHHHHHhhhcccch
Q 045751            3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI   32 (492)
Q Consensus         3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~   32 (492)
                      .|.++++|+++|+|+|||++++|+.|+.+.
T Consensus       207 ~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~  236 (277)
T d2a5yb3         207 EEDVLNKTIELSSGNPATLMMFFKSCEPKT  236 (277)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCSSS
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHhccCC
Confidence            478899999999999999999999999875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00022  Score=58.63  Aligned_cols=117  Identities=12%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcc
Q 045751          180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYI  248 (492)
Q Consensus       180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l  248 (492)
                      .......+.+.|+.|+++++ .++     .+-..+...++|+.|++++|.+.     .+...+ ...++++.+++++|.+
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccccc
Confidence            45666778899999999984 465     34456678889999999999887     233344 6788999999999855


Q ss_pred             -----cchHHHhhccccccccccc--ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751          249 -----HHTADVFWEMNKLRHLNFG--LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD  315 (492)
Q Consensus       249 -----~~lp~~~~~l~~L~~L~L~--~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  315 (492)
                           ..+...+...++|+.++|+  +|.+...                  ....+...+...++|++|++..+
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~------------------~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNN------------------VEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH------------------HHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHH------------------HHHHHHHHHHhCCCcCEEeCcCC
Confidence                 3344556677778776554  3332110                  01122233667788888888776