Citrus Sinensis ID: 045752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNSLTEI
cccEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccccHHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
EcccHHHccccccHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEcccEcccccHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHccEEEHHHcHHHcccccccccccccccHHHHHHHHHHcccccccccEEcccccccccccHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccEcEcccccEcccccccccccccc
gcdasvlldgsdsekfaapnrnsargFEVIDAIKTAVEGQCSGVVSCADILAIAARDSvllsggptwkVLLGRRdglvanqtganalpspfeglNILTAKFAAVGLNIKDLVSLsgahtigfakcaffsnrlsnfsgtgapdatmdTSLVSELQSLcangdgnnttpldrnsidlfdnhyfqnlinnkgllssdqilyssdeakSTTESLVESYSSNSNLFFANFVNSMIkmgnvspltgtngeirkncravnsltei
gcdasvlldgsdsekfaapnrnsarGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVspltgtngeirkncravnsltei
GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNSLTEI
*************************GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFS*******************LC**********LDRNSIDLFDNHYFQNLINNKGLLSSDQILY*******************SNLFFANFVNSMIKMGNVSPLT*******************
GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQS*CA***GNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNS****
GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSD************YSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNSLTEI
GCDASVLLDGSDSEKFA***RNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQT*ANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVN*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNSLTEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q42517327 Peroxidase N OS=Armoracia N/A no 0.972 0.767 0.657 1e-93
Q39034328 Peroxidase 59 OS=Arabidop yes no 0.972 0.765 0.661 9e-93
P80679305 Peroxidase A2 OS=Armoraci N/A no 0.972 0.822 0.600 4e-79
Q9FG34358 Peroxidase 54 OS=Arabidop no no 0.972 0.701 0.589 2e-78
Q42578335 Peroxidase 53 OS=Arabidop no no 0.972 0.749 0.589 9e-78
Q9LEH3327 Peroxidase 15 OS=Ipomoea N/A no 0.972 0.767 0.583 1e-75
O80912349 Peroxidase 23 OS=Arabidop no no 0.992 0.733 0.534 1e-68
Q9SI16338 Peroxidase 15 OS=Arabidop no no 0.968 0.739 0.511 3e-68
O23237331 Peroxidase 49 OS=Arabidop no no 0.972 0.758 0.513 3e-68
P24102349 Peroxidase 22 OS=Arabidop no no 0.992 0.733 0.541 9e-68
>sp|Q42517|PERN_ARMRU Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/254 (65%), Positives = 204/254 (80%), Gaps = 3/254 (1%)

Query: 1   GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
           GCDASVLLDG++SEK A PN NS RGFEVID IK AVE  C GVVSCADIL +AARDSV 
Sbjct: 76  GCDASVLLDGTNSEKLAIPNVNSVRGFEVIDTIKAAVENACPGVVSCADILTLAARDSVY 135

Query: 61  LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
           LSGGP W+V LGR+DGLVANQ+ AN LPSPFE L+ + AKFAAVGLN+ D+V+LSGAHT 
Sbjct: 136 LSGGPQWRVALGRKDGLVANQSSANNLPSPFEPLDAIIAKFAAVGLNVTDVVALSGAHTF 195

Query: 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDLFDNH 179
           G AKC  FSNRL NF+G G PD+T++T+L+S+LQ++C   G+GN T PLDRNS D FDN+
Sbjct: 196 GQAKCDLFSNRLFNFTGAGTPDSTLETTLLSDLQTVCPIGGNGNKTAPLDRNSTDAFDNN 255

Query: 180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
           YF+NL+  KGLLSSDQIL+SSD A +TT+ LVE+YS +  LFF +F  SMI+MG++  + 
Sbjct: 256 YFKNLLEGKGLLSSDQILFSSDLAVNTTKRLVEAYSRSQYLFFRDFTCSMIRMGSL--VN 313

Query: 240 GTNGEIRKNCRAVN 253
           G +GE+R NCR +N
Sbjct: 314 GASGEVRTNCRVIN 327
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Armoracia rusticana (taxid: 3704)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q39034|PER59_ARATH Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2 Back     alignment and function description
>sp|P80679|PERA2_ARMRU Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FG34|PER54_ARATH Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1 Back     alignment and function description
>sp|Q42578|PER53_ARATH Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1 Back     alignment and function description
>sp|Q9LEH3|PER15_IPOBA Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1 Back     alignment and function description
>sp|O80912|PER23_ARATH Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1 Back     alignment and function description
>sp|Q9SI16|PER15_ARATH Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1 Back     alignment and function description
>sp|O23237|PER49_ARATH Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2 Back     alignment and function description
>sp|P24102|PER22_ARATH Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
224073200309 predicted protein [Populus trichocarpa] 0.976 0.815 0.75 1e-103
449448780334 PREDICTED: peroxidase N-like [Cucumis sa 0.984 0.760 0.698 1e-100
449503592334 PREDICTED: peroxidase N-like [Cucumis sa 0.984 0.760 0.698 1e-100
225435616332 PREDICTED: peroxidase N [Vitis vinifera] 0.984 0.765 0.718 2e-99
356561903332 PREDICTED: peroxidase N-like [Glycine ma 0.984 0.765 0.712 2e-99
255647948332 unknown [Glycine max] 0.984 0.765 0.712 2e-99
359807658330 uncharacterized protein LOC100787073 pre 0.984 0.769 0.712 2e-98
356561911331 PREDICTED: peroxidase N-like [Glycine ma 0.984 0.767 0.696 2e-95
297812173328 peroxidase [Arabidopsis lyrata subsp. ly 0.972 0.765 0.681 7e-94
356530407326 PREDICTED: LOW QUALITY PROTEIN: peroxida 0.980 0.776 0.667 1e-92
>gi|224073200|ref|XP_002304020.1| predicted protein [Populus trichocarpa] gi|222841452|gb|EEE78999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/256 (75%), Positives = 220/256 (85%), Gaps = 4/256 (1%)

Query: 1   GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
           GCDASVLLDG+D EKFA PN NSARGFEV+DAIKTAVE QCSGVVSCADIL IAARDSVL
Sbjct: 56  GCDASVLLDGNDGEKFALPNINSARGFEVVDAIKTAVESQCSGVVSCADILTIAARDSVL 115

Query: 61  LSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHT 119
           LSGG +W+VLLGRRDGLVANQTGANA LPSPFE ++ +  KFAAVGLNI D+V+LSGAHT
Sbjct: 116 LSGGKSWRVLLGRRDGLVANQTGANAKLPSPFEDVDTIINKFAAVGLNIIDVVALSGAHT 175

Query: 120 IGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDLFDN 178
           IG A+CA F+NRL NFSGTGAPD+TM++S+VS+LQ+LC    DGN TT LDRNS DLFD 
Sbjct: 176 IGQARCATFNNRLFNFSGTGAPDSTMESSMVSDLQNLCPLTDDGNKTTVLDRNSTDLFDI 235

Query: 179 HYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPL 238
           HYFQNL+NNKGLLSSDQ L+SS     TT++LV++YS+N NLF  +F NSMIKMGN+SPL
Sbjct: 236 HYFQNLLNNKGLLSSDQELFSSTNL--TTKALVQTYSTNQNLFLNDFANSMIKMGNISPL 293

Query: 239 TGTNGEIRKNCRAVNS 254
           TG++GEIRK C  VNS
Sbjct: 294 TGSSGEIRKKCSVVNS 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449448780|ref|XP_004142143.1| PREDICTED: peroxidase N-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503592|ref|XP_004162079.1| PREDICTED: peroxidase N-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225435616|ref|XP_002285642.1| PREDICTED: peroxidase N [Vitis vinifera] Back     alignment and taxonomy information
>gi|356561903|ref|XP_003549216.1| PREDICTED: peroxidase N-like [Glycine max] Back     alignment and taxonomy information
>gi|255647948|gb|ACU24431.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359807658|ref|NP_001240914.1| uncharacterized protein LOC100787073 precursor [Glycine max] gi|255641066|gb|ACU20812.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356561911|ref|XP_003549220.1| PREDICTED: peroxidase N-like [Glycine max] Back     alignment and taxonomy information
>gi|297812173|ref|XP_002873970.1| peroxidase [Arabidopsis lyrata subsp. lyrata] gi|297319807|gb|EFH50229.1| peroxidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356530407|ref|XP_003533773.1| PREDICTED: LOW QUALITY PROTEIN: peroxidase 59-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2147645328 AT5G19890 [Arabidopsis thalian 0.976 0.768 0.658 2e-86
TAIR|locus:2170214358 AT5G06730 [Arabidopsis thalian 0.972 0.701 0.589 5.7e-75
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.972 0.749 0.596 1.2e-74
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.972 0.767 0.583 2e-72
TAIR|locus:2053129338 AT2G18150 [Arabidopsis thalian 0.972 0.742 0.509 6.7e-65
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.972 0.758 0.521 3.7e-64
TAIR|locus:2057165349 AT2G38390 [Arabidopsis thalian 0.972 0.719 0.544 6e-64
TAIR|locus:2053139337 AT2G18140 [Arabidopsis thalian 0.972 0.744 0.509 1.6e-63
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.972 0.719 0.552 1.6e-63
TAIR|locus:2028280346 AT1G44970 [Arabidopsis thalian 0.972 0.725 0.511 6.2e-62
TAIR|locus:2147645 AT5G19890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 168/255 (65%), Positives = 204/255 (80%)

Query:     1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
             GCDAS+LLDG+DSEK A PN NSARGFEVID IK AVE  C GVVSCADIL +AARDSV+
Sbjct:    76 GCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVV 135

Query:    61 LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
             LSGGP W+V LGR+DGLVANQ  AN LPSPFE L+ + AKF AV LNI D+V+LSGAHT 
Sbjct:   136 LSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTF 195

Query:   121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDLFDNH 179
             G AKCA FSNRL NF+G G PDAT++TSL+S LQ++C   G+ N T PLDR++ D FDN+
Sbjct:   196 GQAKCAVFSNRLFNFTGLGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNN 255

Query:   180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
             YF+NL+  KGLLSSDQIL+SSD A +TT+ LVE+YS + +LFF +F  +MI+MGN+S   
Sbjct:   256 YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--N 313

Query:   240 GTNGEIRKNCRAVNS 254
             G +GE+R NCR +N+
Sbjct:   314 GASGEVRTNCRVINN 328
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2170214 AT5G06730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms
TAIR|locus:2053129 AT2G18150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057165 AT2G38390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053139 AT2G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028280 AT1G44970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39034PER59_ARATH1, ., 1, 1, ., 1, ., 70.66140.97280.7652yesno
P59121PERE5_ARMRU1, ., 1, 1, ., 1, ., 70.55760.97670.8235N/Ano
P80679PERA2_ARMRU1, ., 1, 1, ., 1, ., 70.60070.97280.8229N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.946
3rd Layer1.11.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-137
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 9e-81
pfam00141180 pfam00141, peroxidase, Peroxidase 6e-51
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 2e-24
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 1e-16
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 9e-10
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 1e-09
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 4e-09
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 8e-06
cd00692328 cd00692, ligninase, Ligninase and other manganese- 0.004
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  388 bits (999), Expect = e-137
 Identities = 137/256 (53%), Positives = 180/256 (70%), Gaps = 9/256 (3%)

Query: 1   GCDASVLLDGS---DSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
           GCDASVLLD +    SEK A PN  S RGF+VID IK A+E  C GVVSCADILA+AARD
Sbjct: 48  GCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARD 106

Query: 58  SVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGA 117
           +V+L+GGP+++V LGRRDG V++      LPSPF  ++ L + FA+ GL + DLV+LSGA
Sbjct: 107 AVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGA 166

Query: 118 HTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLC-ANGDGNNTTPLDRNSIDLF 176
           HTIG A C+ FS+RL NFSGTG PD T+D +  ++L+  C A GD +   PLD  + + F
Sbjct: 167 HTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTF 226

Query: 177 DNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVS 236
           DN Y++NL+  +GLL+SDQ L S       T ++V  Y++N + FF +F  +M+KMGN+ 
Sbjct: 227 DNSYYKNLLAGRGLLTSDQALLSD----PRTRAIVNRYAANQDAFFRDFAAAMVKMGNIG 282

Query: 237 PLTGTNGEIRKNCRAV 252
            LTG+ GEIRKNCR V
Sbjct: 283 VLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.97
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.97
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.97
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.39
PTZ00411333 transaldolase-like protein; Provisional 85.21
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-83  Score=586.35  Aligned_cols=248  Identities=51%  Similarity=0.835  Sum_probs=234.5

Q ss_pred             CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752            1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN   80 (258)
Q Consensus         1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~   80 (258)
                      ||||||||++...|+++++|. +++||++|+.||+.+|++||++|||||||+||||+||+++|||.|+|++||+|+.+|.
T Consensus        71 GCDaSvLl~~~~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~  149 (324)
T PLN03030         71 GCDASILIDGSNTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSL  149 (324)
T ss_pred             CCceEEeeCCCcccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCC
Confidence            899999999767899999998 8899999999999999999999999999999999999999999999999999999987


Q ss_pred             ccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCC-CCCCCCCHHHHHHHHhhcC-
Q 045752           81 QTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTG-APDATMDTSLVSELQSLCA-  158 (258)
Q Consensus        81 ~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~-~~dp~~d~~~~~~L~~~c~-  158 (258)
                      ...+.+||.|+.++++|+..|+++||+.+|||+||||||||++||.+|.+|||||.|++ .+||+||+.|+.+|++.|| 
T Consensus       150 ~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~  229 (324)
T PLN03030        150 ASDASNLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ  229 (324)
T ss_pred             cccccCCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC
Confidence            65554899999999999999999999999999999999999999999999999999875 5799999999999999999 


Q ss_pred             CCCCCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhCh----HHHHHHHHHHHHHhhc
Q 045752          159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNS----NLFFANFVNSMIKMGN  234 (258)
Q Consensus       159 ~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~----~~F~~~Fa~A~~Km~~  234 (258)
                      .++++..+++|+.||.+|||+||+++++++|+|+||++|++|+    +|+++|++||.|+    ++|+++|++||+||++
T Consensus       230 ~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~----~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~  305 (324)
T PLN03030        230 NGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA----STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSN  305 (324)
T ss_pred             CCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc----cHHHHHHHHhcccccchhhhHHHHHHHHHHHcc
Confidence            3433446789999999999999999999999999999999999    9999999999875    5999999999999999


Q ss_pred             CCCCCCCCCcccccccccc
Q 045752          235 VSPLTGTNGEIRKNCRAVN  253 (258)
Q Consensus       235 lgv~tg~~GeiR~~C~~~n  253 (258)
                      |+|+||.+|||||+|+++|
T Consensus       306 i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        306 IGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             CCCCCCCCCceeccccccC
Confidence            9999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PTZ00411 transaldolase-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 8e-94
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 8e-79
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-74
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 2e-63
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 3e-63
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 3e-63
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 3e-63
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 3e-63
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 3e-63
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 3e-63
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 3e-63
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 5e-63
1sch_A294 Peanut Peroxidase Length = 294 9e-63
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 1e-62
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 1e-62
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 2e-62
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 4e-62
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-47
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 2e-43
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 3e-10
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 7e-09
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 1e-08
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 1e-08
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 1e-08
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 1e-08
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 1e-08
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 1e-08
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 1e-08
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 1e-08
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 2e-08
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 2e-08
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-08
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 8e-05
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 8e-05
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 8e-05
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  339 bits (870), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 203/254 (79%), Gaps = 3/254 (1%)
Query: 1   GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
           GCDAS+LLDG+DSEK A PN NSARGFEVID IK AVE  C GVVSCADIL +AARDSV+
Sbjct: 48  GCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVV 107
Query: 61  LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
           LSGGP W+V LGR+DGLVANQ  AN LPSPFE L+ + AKF AV LNI D+V+LSGAHT 
Sbjct: 108 LSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTF 167
Query: 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDLFDNH 179
           G AKCA FSNRL NF+G G PDAT++TSL+S LQ++C   G+ N T PLDR++ D FDN+
Sbjct: 168 GQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNN 227
Query: 180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
           YF+NL+  KGLLSSDQIL+SSD A +TT+ LVE+YS + +LFF +F  +MI+MGN+S   
Sbjct: 228 YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--N 285
Query: 240 GTNGEIRKNCRAVN 253
           G +GE+R NCR +N
Sbjct: 286 GASGEVRTNCRVIN 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-155
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-152
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-150
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-149
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-147
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-142
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-137
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 4e-79
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 2e-59
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 2e-56
2e39_A344 Peroxidase; heme protein, coordination geometry of 2e-52
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 4e-52
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 5e-49
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 2e-48
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 2e-15
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
 Score =  433 bits (1115), Expect = e-155
 Identities = 168/255 (65%), Positives = 204/255 (80%), Gaps = 3/255 (1%)

Query: 1   GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
           GCDAS+LLDG+DSEK A PN NSARGFEVID IK AVE  C GVVSCADIL +AARDSV+
Sbjct: 48  GCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVV 107

Query: 61  LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
           LSGGP W+V LGR+DGLVANQ  AN LPSPFE L+ + AKF AV LNI D+V+LSGAHT 
Sbjct: 108 LSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTF 167

Query: 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLC-ANGDGNNTTPLDRNSIDLFDNH 179
           G AKCA FSNRL NF+G G PDAT++TSL+S LQ++C   G+ N T PLDR++ D FDN+
Sbjct: 168 GQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNN 227

Query: 180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
           YF+NL+  KGLLSSDQIL+SSD A +TT+ LVE+YS + +LFF +F  +MI+MGN+S   
Sbjct: 228 YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--N 285

Query: 240 GTNGEIRKNCRAVNS 254
           G +GE+R NCR +N+
Sbjct: 286 GASGEVRTNCRVINN 300
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=2.2e-87  Score=609.58  Aligned_cols=250  Identities=46%  Similarity=0.686  Sum_probs=239.3

Q ss_pred             CCCceeecCC---CcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCC
Q 045752            1 GCDASVLLDG---SDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGL   77 (258)
Q Consensus         1 GcDaSill~~---~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~   77 (258)
                      ||||||||++   +.+|+++++|.++++||++|+.||++||++||++|||||||+||||+||+++|||.|+|++||+|+.
T Consensus        48 GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~  127 (304)
T 3hdl_A           48 GCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGT  127 (304)
T ss_dssp             SSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCS
T ss_pred             CCCeeeeecCCCCCcccccCCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCC
Confidence            8999999986   4589999999977799999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhh
Q 045752           78 VANQTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSL  156 (258)
Q Consensus        78 ~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~  156 (258)
                      ++....++ +||.|+.++++|++.|++|||+.+||||||||||||++||.+|.+|||||+|++.+||+||+.|++.|+..
T Consensus       128 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~  207 (304)
T 3hdl_A          128 VSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNT  207 (304)
T ss_dssp             CCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHH
T ss_pred             CCCccccccCCCCCCCCHHHHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhcc
Confidence            99876666 89999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cC-CCC--CCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhh
Q 045752          157 CA-NGD--GNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMG  233 (258)
Q Consensus       157 c~-~~~--~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~  233 (258)
                      || .++  +++.++||..||.+|||+||++|++++|||+||++|+.|+    +|+++|++||.||++|+++|++||+||+
T Consensus       208 Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~----~t~~~V~~yA~~~~~F~~~Fa~AmvKmg  283 (304)
T 3hdl_A          208 CPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEA----NLSAAVKANAMNLTAWASKFAQAMVKMG  283 (304)
T ss_dssp             SCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSH----HHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCccccCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCc----cHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99 444  5667899989999999999999999999999999999999    9999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccccccc
Q 045752          234 NVSPLTGTNGEIRKNCRAVNS  254 (258)
Q Consensus       234 ~lgv~tg~~GeiR~~C~~~n~  254 (258)
                      +|||+||.+|||||+|++||+
T Consensus       284 ~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          284 QIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             TTTCCCTTSSBCCSBTTBCC-
T ss_pred             hcCCCCCCCCeeeCCccccCC
Confidence            999999999999999999994
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-103
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 5e-98
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 5e-96
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 1e-90
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 2e-83
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 6e-83
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-55
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 1e-54
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 2e-54
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-36
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 2e-36
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 7e-32
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]

 Score =  300 bits (769), Expect = e-103
 Identities = 168/255 (65%), Positives = 204/255 (80%), Gaps = 3/255 (1%)

Query: 1   GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
           GCDAS+LLDG+DSEK A PN NSARGFEVID IK AVE  C GVVSCADIL +AARDSV+
Sbjct: 48  GCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVV 107

Query: 61  LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
           LSGGP W+V LGR+DGLVANQ  AN LPSPFE L+ + AKF AV LNI D+V+LSGAHT 
Sbjct: 108 LSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTF 167

Query: 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLC-ANGDGNNTTPLDRNSIDLFDNH 179
           G AKCA FSNRL NF+G G PDAT++TSL+S LQ++C   G+ N T PLDR++ D FDN+
Sbjct: 168 GQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNN 227

Query: 180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
           YF+NL+  KGLLSSDQIL+SSD A +TT+ LVE+YS + +LFF +F  +MI+MGN+S   
Sbjct: 228 YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--N 285

Query: 240 GTNGEIRKNCRAVNS 254
           G +GE+R NCR +N+
Sbjct: 286 GASGEVRTNCRVINN 300
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.96
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.1e-81  Score=571.95  Aligned_cols=252  Identities=55%  Similarity=0.856  Sum_probs=239.7

Q ss_pred             CCCceeecCC---CcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCC
Q 045752            1 GCDASVLLDG---SDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGL   77 (258)
Q Consensus         1 GcDaSill~~---~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~   77 (258)
                      ||||||||++   +.+|+++++|.++++||++|+.||++||+.||++|||||||+||||+||+++|||.|+|++||+|+.
T Consensus        48 GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~  127 (304)
T d1fhfa_          48 GCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSL  127 (304)
T ss_dssp             CSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCS
T ss_pred             CCCeeEeecCCCCccccccCCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcC
Confidence            8999999996   5689999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhh
Q 045752           78 VANQTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSL  156 (258)
Q Consensus        78 ~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~  156 (258)
                      ++....+. +||.|+.++++|+..|++|||+.+|||||+||||||++||.+|..|+|+|.+++.+||++++.|+..|+..
T Consensus       128 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~  207 (304)
T d1fhfa_         128 TANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRAR  207 (304)
T ss_dssp             CCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHH
T ss_pred             ccccccccccCCCCCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHh
Confidence            99776666 89999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cC-CCCCCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC
Q 045752          157 CA-NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV  235 (258)
Q Consensus       157 c~-~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~l  235 (258)
                      || ++.....+.+|..||.+|||+||++++.++|+|.||++|+.||  .++|+++|++||+||++|+++|++||+||++|
T Consensus       208 c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp--~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~l  285 (304)
T d1fhfa_         208 CPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTP--GADTIPIVNSFSSNQNTFFSNFRVSMIKMGNI  285 (304)
T ss_dssp             SCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSST--TCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcccccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCC--CchHHHHHHHHhhCHHHHHHHHHHHHHHHhcC
Confidence            99 5555667889989999999999999999999999999999996  12699999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccc
Q 045752          236 SPLTGTNGEIRKNCRAVNS  254 (258)
Q Consensus       236 gv~tg~~GeiR~~C~~~n~  254 (258)
                      |||||.+|||||+|+++|.
T Consensus       286 gv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         286 GVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             TCCCTTSSBCCSBTTBCCC
T ss_pred             CCCCCCCCcccCcccCcCC
Confidence            9999999999999999994
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure