Citrus Sinensis ID: 045762

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---

EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

cccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEEEccEEEEEEcccEEEEEEEccc

cccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHcHccccHHHcccccccEEEEEHHHHHHHccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEcccEEEccccccEEEEEEcccc

EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRvvsplgdsMQRVASCFTEALSARLAATlttkpststptpfspfppnsleVLKIYQIVYQacpyvkfahfTANQAIFEAFEAEERVHVIdldilqgyqwPAFMQALaarpggapflritGVGATIESAKETGRCLTELahslhvpfefhpvgeqledlkphmfnRRVGEALAVNAVNRlhrvpsnclgNLLAMIRDQAPNIVTIVEQeashngpyFLGRFLEALHYYSAIFdsldatfppdsaqraKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMegkgfrgvplsanavTQSKILLGlyscdgyrltedngclllGWQDRALLAASAWRC

EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLttkpststptpfspfpPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEirnivaceggertarHERLEKWRKIMegkgfrgvplsanAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFtealsarlaatlttkpststptpfspfppNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

*****LQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAAT*******************SLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAW**

**DSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTK***************SLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATL************SPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

****GLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWRC

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SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		373	2.2.26 [Sep-21-2011]
Q8S4W7		590	DELLA protein GAI1 OS=Vit	no	no	0.962	0.608	0.452	2e-86
Q9AVK4		819	Protein SCARECROW OS=Pisu	N/A	no	0.946	0.431	0.449	3e-86
Q2Z2E9		783	Protein SCARECROW OS=Ipom	N/A	no	0.949	0.452	0.455	2e-84
Q9C8Y3		511	DELLA protein RGL1 OS=Ara	yes	no	0.957	0.698	0.442	2e-83
Q9M384		653	Protein SCARECROW OS=Arab	no	no	0.935	0.534	0.440	4e-83
Q8GXW1		547	DELLA protein RGL2 OS=Ara	no	no	0.973	0.663	0.436	1e-81
Q84TQ7		537	DELLA protein GAI OS=Goss	N/A	no	0.941	0.653	0.443	2e-81
Q2RB59		651	Protein SCARECROW 1 OS=Or	yes	no	0.943	0.540	0.448	3e-80
Q9ST48		630	DELLA protein DWARF8 OS=Z	N/A	no	0.962	0.569	0.423	2e-78
Q7Y1B6		588	DELLA protein GAI OS=Sola	N/A	no	0.949	0.602	0.416	3e-78

>sp\|Q8S4W7\|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1	Back alignment and function desciption

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/380 (45%), Positives = 237/380 (62%), Gaps = 21/380 (5%)

Query: 2   QDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLA 61
           Q++G++LVH L+ACAEAV +E+  LA   +  +  +      +M++VA+ F E L+ R+ 
Sbjct: 208 QETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIY 267

Query: 62  ATLTTKPSTSTPTPFSPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERV 121
                KP  S+   FS       ++L+++   Y+ CPY+KFAHFTANQAI EAFE ++RV
Sbjct: 268 RLYPDKPLDSS---FS-------DILQMH--FYETCPYLKFAHFTANQAILEAFEGKKRV 315

Query: 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGA----TIESAKETGRCLTELAHSL 177
           HVID  + QG QWPA MQALA RPGG P  R+TG+G       +   E G  L +LA ++
Sbjct: 316 HVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETI 375

Query: 178 HVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLG--NLLAMIRDQAP 234
           HV FE+   V   L DL   M   R GE++AVN+V  LH + +   G   +L+ ++D  P
Sbjct: 376 HVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARPGGIERVLSAVKDMKP 435

Query: 235 NIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDAT-FPPDSAQRAKVEQYIFAPEIR 293
           +IVTIVEQEA+HNGP FL RF E+LHYYS +FDSL+     P + Q   + +     +I 
Sbjct: 436 DIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQIC 495

Query: 294 NIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYS-CDGYRLTED 352
           N+VACEG ER  RHE L +WR  +   GF  V L +NA  Q+ +LL L++  DGYR+ E+
Sbjct: 496 NVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEEN 555

Query: 353 NGCLLLGWQDRALLAASAWR 372
           NGCL+LGW  R L+A SAW+
Sbjct: 556 NGCLMLGWHTRPLIATSAWQ 575

Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Vitis vinifera (taxid: 29760)

>sp\|Q9AVK4\|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1	Back alignment and function description

>sp\|Q2Z2E9\|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1	Back alignment and function description

>sp\|Q9C8Y3\|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1	Back alignment and function description

>sp\|Q9M384\|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1	Back alignment and function description

>sp\|Q8GXW1\|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2	Back alignment and function description

>sp\|Q84TQ7\|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1	Back alignment and function description

>sp\|Q2RB59\|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9ST48\|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1	Back alignment and function description

>sp\|Q7Y1B6\|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		373
359488458		668	PREDICTED: DELLA protein GAI1-like [Viti	1.0	0.558	0.916	0.0
255543667		686	DELLA protein GAI1, putative [Ricinus co	1.0	0.543	0.911	0.0
224055775		679	GRAS family transcription factor [Populu	1.0	0.549	0.906	0.0
449442056		685	PREDICTED: DELLA protein GAI1-like [Cucu	0.989	0.538	0.893	0.0
449529608		688	PREDICTED: DELLA protein GAI1-like [Cucu	0.989	0.536	0.893	0.0
357503613		674	Protein SCARECROW [Medicago truncatula]	1.0	0.553	0.859	0.0
356561568		687	PREDICTED: DELLA protein GAI1-like [Glyc	0.989	0.537	0.863	0.0
356571585		681	PREDICTED: DELLA protein GAI1-like [Glyc	0.989	0.541	0.860	0.0
413920910		771	hypothetical protein ZEAMMB73_473687 [Ze	0.994	0.481	0.712	1e-151
242071013		781	hypothetical protein SORBIDRAFT_05g01807	0.994	0.475	0.701	1e-150

>gi\|359488458\|ref\|XP_002274834.2\| PREDICTED: DELLA protein GAI1-like [Vitis vinifera] gi\|296082313\|emb\|CBI21318.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/373 (91%), Positives = 358/373 (95%)

Query: 1   EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARL 60
           E DSGLQLVH LLACAEAVAKED+MLARRYLHHLNRVV+PLGDSMQRVASCFTEALSARL
Sbjct: 296 EHDSGLQLVHFLLACAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARL 355

Query: 61  AATLTTKPSTSTPTPFSPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEER 120
           AATLT KPSTST  PF+PFPPNSLE+LKIYQI+YQACPY+KFAHFTANQAIFEAFEAEER
Sbjct: 356 AATLTPKPSTSTTKPFNPFPPNSLEILKIYQILYQACPYIKFAHFTANQAIFEAFEAEER 415

Query: 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP 180
           VHVIDLDILQGYQWPAF+QALAARPGGAPFLRITGVG + ES +ETGRCLTELAHSLHVP
Sbjct: 416 VHVIDLDILQGYQWPAFIQALAARPGGAPFLRITGVGCSPESVRETGRCLTELAHSLHVP 475

Query: 181 FEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIV 240
           FEFHPVGE+LEDLKPHMFNRRVGEALAVN+ NRLHRVP+N LGNLLAMIRDQAPNIVTIV
Sbjct: 476 FEFHPVGEELEDLKPHMFNRRVGEALAVNSANRLHRVPTNFLGNLLAMIRDQAPNIVTIV 535

Query: 241 EQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEG 300
           EQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAK+EQYIFAP IRNIVACEG
Sbjct: 536 EQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKLEQYIFAPVIRNIVACEG 595

Query: 301 GERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGW 360
            ER  RHERLEKWRK+MEGKGF+GVPLSANAVTQSKILLGLYSCDGYRLTED GCLLLGW
Sbjct: 596 AERVMRHERLEKWRKLMEGKGFQGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGW 655

Query: 361 QDRALLAASAWRC 373
           QDRA+LAASAWRC
Sbjct: 656 QDRAILAASAWRC 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543667\|ref\|XP_002512896.1\| DELLA protein GAI1, putative [Ricinus communis] gi\|223547907\|gb\|EEF49399.1\| DELLA protein GAI1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224055775\|ref\|XP_002298647.1\| GRAS family transcription factor [Populus trichocarpa] gi\|222845905\|gb\|EEE83452.1\| GRAS family transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449442056\|ref\|XP_004138798.1\| PREDICTED: DELLA protein GAI1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449529608\|ref\|XP_004171790.1\| PREDICTED: DELLA protein GAI1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357503613\|ref\|XP_003622095.1\| Protein SCARECROW [Medicago truncatula] gi\|357503619\|ref\|XP_003622098.1\| Protein SCARECROW [Medicago truncatula] gi\|355497110\|gb\|AES78313.1\| Protein SCARECROW [Medicago truncatula] gi\|355497113\|gb\|AES78316.1\| Protein SCARECROW [Medicago truncatula] gi\|411101570\|gb\|AFK81971.2\| required for arbuscular mycorrhization 1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356561568\|ref\|XP_003549053.1\| PREDICTED: DELLA protein GAI1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356571585\|ref\|XP_003553957.1\| PREDICTED: DELLA protein GAI1-like [Glycine max]	Back alignment and taxonomy information

>gi\|413920910\|gb\|AFW60842.1\| hypothetical protein ZEAMMB73_473687 [Zea mays]	Back alignment and taxonomy information

>gi\|242071013\|ref\|XP_002450783.1\| hypothetical protein SORBIDRAFT_05g018070 [Sorghum bicolor] gi\|241936626\|gb\|EES09771.1\| hypothetical protein SORBIDRAFT_05g018070 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		373
TAIR\|locus:2080345		653	SCR "SCARECROW" [Arabidopsis t	0.981	0.560	0.424	2.7e-75
TAIR\|locus:2201557		511	RGL1 "RGA-like 1" [Arabidopsis	0.954	0.696	0.436	2.5e-74
TAIR\|locus:2099624		547	RGL2 "RGA-like 2" [Arabidopsis	0.973	0.663	0.423	4.1e-72
TAIR\|locus:2005516		587	RGA1 "REPRESSOR OF GA1-3 1" [A	0.739	0.470	0.467	2.9e-70
TAIR\|locus:2006747		533	GAI "GIBBERELLIC ACID INSENSIT	0.954	0.667	0.405	2.4e-69
TAIR\|locus:2157477		523	RGL3 "RGA-like protein 3" [Ara	0.962	0.686	0.428	5.6e-68
TAIR\|locus:2165685		405	AT5G41920 "AT5G41920" [Arabido	0.970	0.893	0.411	1.5e-67
TAIR\|locus:2008086		482	SCL3 "AT1G50420" [Arabidopsis	0.498	0.385	0.395	6.1e-66
TAIR\|locus:2164783		490	PAT1 "AT5G48150" [Arabidopsis	0.954	0.726	0.394	1.6e-63
TAIR\|locus:2044973		413	SCL21 "AT2G04890" [Arabidopsis	0.954	0.861	0.381	9e-61

TAIR\|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 158/372 (42%), Positives = 234/372 (62%)

Query:     1 EQDSGLQLVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFXXXXXXXX 60
             + + GL L+ LLL CAEAV+ ++   A + L  ++++ +P G S QRVA+ F        
Sbjct:   283 QDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARL 342

Query:    61 XXXXXXXXXXXXXXXXXXXXXNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEER 120
                                  +SL+++  +Q+     P VKF+HFTANQAI EAFE E+ 
Sbjct:   343 LNSCLGIYAALPSRWMPQT--HSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDS 400

Query:   121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP 180
             VH+IDLDI+QG QWP     LA+RPGG P +R+TG+G ++E+ + TG+ L++ A  L +P
Sbjct:   401 VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLP 460

Query:   181 FEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNR-LHRVPSNCLGNLLAMIRDQAPNIVTI 239
             FEF P+ E++ +L     N R  EA+AV+ +   L+ V  +   + L +++  AP +VT+
Sbjct:   461 FEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSD-AHTLWLLQRLAPKVVTV 519

Query:   240 VEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACE 299
             VEQ+ SH G  FLGRF+EA+HYYSA+FDSL A++  +S +R  VEQ + + EIRN++A  
Sbjct:   520 VEQDLSHAGS-FLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVG 578

Query:   300 GGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLG 359
             G  R+    + E WR+ M+  GF+G+ L+ NA TQ+ +LLG++  DGY L +DNG L LG
Sbjct:   579 GPSRSGE-VKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLG 637

Query:   360 WQDRALLAASAW 371
             W+D +LL ASAW
Sbjct:   638 WKDLSLLTASAW 649

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009630 "gravitropism" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0051457 "maintenance of protein location in nucleus" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=IMP

TAIR\|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037899001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (383 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		373
pfam03514		372	pfam03514, GRAS, GRAS family transcription factor	1e-170

>gnl\|CDD\|217595 pfam03514, GRAS, GRAS family transcription factor	Back alignment and domain information

 Score =  477 bits (1231), Expect = e-170
 Identities = 212/374 (56%), Positives = 264/374 (70%), Gaps = 11/374 (2%)

Query: 8   LVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTK 67
           LVHLLLACAEAV+  D  LA+  L  LN++ SP GD MQR+A+ FTEAL+ARLA + ++ 
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 68  PSTSTPTPFSPFPPNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLD 127
            S   P+P +P   +S+EVL  Y++ Y+  PY+KF HFTANQAI EAFE EERVH+ID D
Sbjct: 61  YSALPPSPSTP--SDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFD 118

Query: 128 ILQGYQWPAFMQALAARPGGAPFLRITGVGAT----IESAKETGRCLTELAHSLHVPFEF 183
           I QG QWP+ +QALA+RPGG P LRITG+G+      E  +ETG  L + A SL VPFEF
Sbjct: 119 IGQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 184 HP-VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVP--SNCLGN--LLAMIRDQAPNIVT 238
           +P V ++LEDL   M + R GEALAVN V  LHR+   S  L +   L +++   P +VT
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVT 238

Query: 239 IVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVAC 298
           +VEQEA+HN   FL RF+EALHYYSA+FDSL+AT P DS +R KVE+ +   EI N+VAC
Sbjct: 239 LVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVAC 298

Query: 299 EGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLL 358
           EG ER  RHE   KWR+ M   GFR VPLS  AV Q+K+LL LY  DGYR+ EDNG L+L
Sbjct: 299 EGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVL 358

Query: 359 GWQDRALLAASAWR 372
           GW+ R L+AASAWR
Sbjct: 359 GWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		373
PF03514		374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	100.0
PRK15451		247	tRNA cmo(5)U34 methyltransferase; Provisional	98.02
TIGR00740		239	methyltransferase, putative. A simple BLAST search	97.3
TIGR02716		306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.97
PRK06202		232	hypothetical protein; Provisional	96.83
TIGR02752		231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.59
PLN02233		261	ubiquinone biosynthesis methyltransferase	96.22
TIGR03438		301	probable methyltransferase. This model represents	95.48
PF13649		101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.34
COG2226		238	UbiE Methylase involved in ubiquinone/menaquinone	95.27
PF01209		233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.2
TIGR01934		223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.1
smart00138		264	MeTrc Methyltransferase, chemotaxis proteins. Meth	95.09
PF13489		161	Methyltransf_23: Methyltransferase domain; PDB: 3J	94.9
PLN02585		315	magnesium protoporphyrin IX methyltransferase	94.74
PLN02336		475	phosphoethanolamine N-methyltransferase	94.63
PF12847		112	Methyltransf_18: Methyltransferase domain; PDB: 3G	94.58
PF13847		152	Methyltransf_31: Methyltransferase domain; PDB: 3T	94.31
PLN02336		475	phosphoethanolamine N-methyltransferase	94.07
PRK11207		197	tellurite resistance protein TehB; Provisional	94.0
PRK08317		241	hypothetical protein; Provisional	93.95
PRK00216		239	ubiE ubiquinone/menaquinone biosynthesis methyltra	93.78
TIGR03587		204	Pse_Me-ase pseudaminic acid biosynthesis-associate	93.71
TIGR00477		195	tehB tellurite resistance protein TehB. Part of a	93.53
PTZ00098		263	phosphoethanolamine N-methyltransferase; Provision	93.27
PRK05785		226	hypothetical protein; Provisional	93.24
PF08241		95	Methyltransf_11: Methyltransferase domain; InterPr	93.11
PLN02396		322	hexaprenyldihydroxybenzoate methyltransferase	93.06
PRK12335		287	tellurite resistance protein TehB; Provisional	93.02
PF09243		274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	92.94
PRK14103		255	trans-aconitate 2-methyltransferase; Provisional	92.51
TIGR02021		219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	92.49
TIGR03439		319	methyl_EasF probable methyltransferase domain, Eas	91.97
TIGR02072		240	BioC biotin biosynthesis protein BioC. This enzyme	91.72
PRK01683		258	trans-aconitate 2-methyltransferase; Provisional	90.45
PF08242		99	Methyltransf_12: Methyltransferase domain; InterPr	89.67
COG4106		257	Tam Trans-aconitate methyltransferase [General fun	89.36
PRK11036		255	putative S-adenosyl-L-methionine-dependent methylt	89.34
PF00891		241	Methyltransf_2: O-methyltransferase; InterPro: IPR	89.16
PF03291		331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	88.69
TIGR02081		194	metW methionine biosynthesis protein MetW. This pr	88.31
COG2230		283	Cfa Cyclopropane fatty acid synthase and related m	88.11
PLN02244		340	tocopherol O-methyltransferase	87.74
PRK11705		383	cyclopropane fatty acyl phospholipid synthase; Pro	87.59
PF03848		192	TehB: Tellurite resistance protein TehB; InterPro:	85.55
PRK00107		187	gidB 16S rRNA methyltransferase GidB; Reviewed	85.44
PF02353		273	CMAS: Mycolic acid cyclopropane synthetase; InterP	85.31
PRK10258		251	biotin biosynthesis protein BioC; Provisional	84.86
PRK07580		230	Mg-protoporphyrin IX methyl transferase; Validated	84.29
PRK09489		342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	84.1
PRK11873		272	arsM arsenite S-adenosylmethyltransferase; Reviewe	82.84
PRK06922		677	hypothetical protein; Provisional	82.37
smart00650		169	rADc Ribosomal RNA adenine dimethylases.	82.34
smart00828		224	PKS_MT Methyltransferase in polyketide synthase (P	81.65
PRK15001		378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	81.37
TIGR00138		181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	81.35
TIGR00452		314	methyltransferase, putative. Known examples to dat	81.11
PRK10909		199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	80.45

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []	Back alignment and domain information

Probab=100.00  E-value=7.1e-116  Score=874.15  Aligned_cols=363  Identities=57%  Similarity=0.918  Sum_probs=344.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHHHhHhccCCCCCCCCCCCCCCCCCCCHHHHH
Q 045762            8 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSPFPPNSLEVL   87 (373)
Q Consensus         8 l~~lL~~cA~Ai~~~~~~~A~~lL~~l~~~~s~~g~~~qRla~yF~~AL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (373)
                      |++||++||+||+.||.+.|+.+|++|++++||.|||+||+|+||++||.+|+.+. +++.|++.+....+ +.+..+..
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~-~~~~~~~~~~~~~~-~~~~~~~~   78 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGS-GPGLYSALPPSSPS-PSESSEQL   78 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhcc-CcccccCCCCcccc-ccchHHHH
Confidence            68999999999999999999999999999999999999999999999999999996 67776644322111 12245889


Q ss_pred             HHHHHHHhhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecC----ChhHH
Q 045762           88 KIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGA----TIESA  163 (373)
Q Consensus        88 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~----~~~~l  163 (373)
                      .+|+.||+.|||+||||||||||||||++|+++||||||||++|.|||+|||+||+|++|||+||||||++    +.+.+
T Consensus        79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l  158 (374)
T PF03514_consen   79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADEL  158 (374)
T ss_pred             HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999    67899


Q ss_pred             HHHHHHHHHHHhhcCCCeEEEe-cCCCccCcCcccccccCCceEEEeeccccCCCCCC------cHHHHHHHHHhcCCcE
Q 045762          164 KETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSN------CLGNLLAMIRDQAPNI  236 (373)
Q Consensus       164 ~~tg~rL~~fA~~lgv~fef~~-v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~------~~~~~L~~ir~L~P~v  236 (373)
                      ++||+||.+||+++||||||++ +..+++++++++|++++||+|||||+|+|||+.++      .++.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            9999999999999999999999 68999999999999999999999999999999843      3789999999999999


Q ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHH
Q 045762          237 VTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKI  316 (373)
Q Consensus       237 v~~~E~ea~~n~~~F~~RF~eaL~~Y~alfdsLea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r  316 (373)
                      ||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccccCChHHHHHHHHHHhccCCCCcEEEeeCCEEEEEECCceeEEEeeec
Q 045762          317 MEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWR  372 (373)
Q Consensus       317 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~g~l~L~Wk~~~L~~~SaW~  372 (373)
                      |.+|||+++|+|++++.|||+||++|+++||+|++++|||+||||++||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999999878999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional	Back alignment and domain information

>TIGR00740 methyltransferase, putative	Back alignment and domain information

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU	Back alignment and domain information

>PRK06202 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase	Back alignment and domain information

>PLN02233 ubiquinone biosynthesis methyltransferase	Back alignment and domain information

>TIGR03438 probable methyltransferase	Back alignment and domain information

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A	Back alignment and domain information

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []	Back alignment and domain information

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases	Back alignment and domain information

>smart00138 MeTrc Methyltransferase, chemotaxis proteins	Back alignment and domain information

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C	Back alignment and domain information

>PLN02585 magnesium protoporphyrin IX methyltransferase	Back alignment and domain information

>PLN02336 phosphoethanolamine N-methyltransferase	Back alignment and domain information

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A	Back alignment and domain information

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A	Back alignment and domain information

>PLN02336 phosphoethanolamine N-methyltransferase	Back alignment and domain information

>PRK11207 tellurite resistance protein TehB; Provisional	Back alignment and domain information

>PRK08317 hypothetical protein; Provisional	Back alignment and domain information

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed	Back alignment and domain information

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase	Back alignment and domain information

>TIGR00477 tehB tellurite resistance protein TehB	Back alignment and domain information

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional	Back alignment and domain information

>PRK05785 hypothetical protein; Provisional	Back alignment and domain information

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase	Back alignment and domain information

>PRK12335 tellurite resistance protein TehB; Provisional	Back alignment and domain information

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PRK14103 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase	Back alignment and domain information

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family	Back alignment and domain information

>TIGR02072 BioC biotin biosynthesis protein BioC	Back alignment and domain information

>PRK01683 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]	Back alignment and domain information

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes	Back alignment and domain information

>TIGR02081 metW methionine biosynthesis protein MetW	Back alignment and domain information

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02244 tocopherol O-methyltransferase	Back alignment and domain information

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional	Back alignment and domain information

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB	Back alignment and domain information

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed	Back alignment and domain information

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)	Back alignment and domain information

>PRK10258 biotin biosynthesis protein BioC; Provisional	Back alignment and domain information

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated	Back alignment and domain information

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional	Back alignment and domain information

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed	Back alignment and domain information

>PRK06922 hypothetical protein; Provisional	Back alignment and domain information

>smart00650 rADc Ribosomal RNA adenine dimethylases	Back alignment and domain information

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes	Back alignment and domain information

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional	Back alignment and domain information

>TIGR00138 gidB 16S rRNA methyltransferase GidB	Back alignment and domain information

>TIGR00452 methyltransferase, putative	Back alignment and domain information

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		373
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 60/366 (16%), Positives = 114/366 (31%), Gaps = 84/366 (22%)

Query: 25  MLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSPFPPNSL 84
           ML +   + ++   +   D    +      ++ A L   L +KP             N L
Sbjct: 201 MLQKLL-YQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPY-----------ENCL 247

Query: 85  EVL------KIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPA-- 136
            VL      K +     +C   K    T  + + +   A    H+               
Sbjct: 248 LVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 137 --FMQALAARP--------GGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPV 186
              ++ L  RP           P   ++ +  +I     T        H          +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLAT---WDNWKHVNCDKLT-TII 359

Query: 187 GEQLEDLKPHMFNRRVGEALAV--NAVNRLHRVPSNCLGNL-LAMIRDQAPNIVT----- 238
              L  L+P  + R++ + L+V   + +    +P+  L  +   +I+     +V      
Sbjct: 360 ESSLNVLEPAEY-RKMFDRLSVFPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 239 -IVEQEASHNGPYFL-GRFLE---------ALHYYSAIFDS--LDATFPPDSAQRAKVEQ 285
            +VE++        +   +LE         ALH   +I D   +  TF  D      ++Q
Sbjct: 415 SLVEKQ-PKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 286 YIFAPEIRNIVACEGGERTARHERLEKWRKI------MEGKGFRGVPLSANAVTQSKILL 339
           Y ++    ++   E        ER+  +R +      +E K  R    + NA       L
Sbjct: 472 YFYSHIGHHLKNIE------HPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTL 524

Query: 340 G---LY 342
                Y
Sbjct: 525 QQLKFY 530

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		373
4gek_A		261	TRNA (CMO5U34)-methyltransferase; structural genom	97.98
3dtn_A		234	Putative methyltransferase MM_2633; structural gen	97.36
2ip2_A		334	Probable phenazine-specific methyltransferase; pyo	96.82
4a6d_A		353	Hydroxyindole O-methyltransferase; melatonin, circ	96.81
2r3s_A		335	Uncharacterized protein; methyltransferase domain,	96.8
3dh0_A		219	SAM dependent methyltransferase; cystal structure,	96.79
2aot_A		292	HMT, histamine N-methyltransferase; classic methyl	96.73
3dp7_A		363	SAM-dependent methyltransferase; structural genomi	96.68
3i53_A		332	O-methyltransferase; CO-complex, rossmann-like fol	96.59
3bkx_A		275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.55
1x19_A		359	CRTF-related protein; methyltransferase, bacterioc	96.53
3htx_A		950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.52
3mcz_A		352	O-methyltransferase; adomet_mtases, S-adenosylmeth	96.47
3h2b_A		203	SAM-dependent methyltransferase; alpha-beta protei	96.46
3ujc_A		266	Phosphoethanolamine N-methyltransferase; parasite;	96.45
3gwz_A		369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.44
1vl5_A		260	Unknown conserved protein BH2331; putative methylt	96.33
1qzz_A		374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	96.24
3e23_A		211	Uncharacterized protein RPA2492; alpha-beta protei	95.97
3jwg_A		219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	95.89
1xxl_A		239	YCGJ protein; structural genomics, protein structu	95.84
3mgg_A		276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.8
3vc1_A		312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.79
1xtp_A		254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	95.71
3f4k_A		257	Putative methyltransferase; structural genomics, P	95.63
1tw3_A		360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.52
3dlc_A		219	Putative S-adenosyl-L-methionine-dependent methylt	95.5
3m70_A		286	Tellurite resistance protein TEHB homolog; structu	95.49
3jwh_A		217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	95.44
1kpg_A		287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.39
3reo_A		368	(ISO)eugenol O-methyltransferase; directed evoluti	95.33
2qe6_A		274	Uncharacterized protein TFU_2867; putative methylt	95.28
3lst_A		348	CALO1 methyltransferase; calicheamicin, enediyne,	95.14
2xvm_A		199	Tellurite resistance protein TEHB; antibiotic resi	94.95
4fsd_A		383	Arsenic methyltransferase; rossmann fold; 1.75A {C	94.86
3dli_A		240	Methyltransferase; PSI-II, NYSGXRC, structural gen	94.5
3kkz_A		267	Uncharacterized protein Q5LES9; putative methyltra	94.17
3hnr_A		220	Probable methyltransferase BT9727_4108; structural	94.16
3hem_A		302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	94.11
3l8d_A		242	Methyltransferase; structural genomics, PSI, nysgr	94.1
3ofk_A		216	Nodulation protein S; NODS, N-methyltransferase, S	94.09
3gu3_A		284	Methyltransferase; alpha-beta protein, structural	94.09
3p9c_A		364	Caffeic acid O-methyltransferase; S-adenosylmethio	94.05
3thr_A		293	Glycine N-methyltransferase; GNMT, folate, methylt	93.99
1fp2_A		352	Isoflavone O-methyltransferase; protein-product co	93.73
3lcc_A		235	Putative methyl chloride transferase; halide methy	93.69
3g5l_A		253	Putative S-adenosylmethionine dependent methyltran	93.64
2o57_A		297	Putative sarcosine dimethylglycine methyltransfera	93.55
3ccf_A		279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	93.52
3u81_A		221	Catechol O-methyltransferase; neurotransmitter deg	93.38
2fk8_A		318	Methoxy mycolic acid synthase 4; S-adenosylmethion	93.33
3g2m_A		299	PCZA361.24; SAM-dependent methyltransferase, glyco	93.3
2vdw_A		302	Vaccinia virus capping enzyme D1 subunit; nucleoti	93.24
3ocj_A		305	Putative exported protein; structural genomics, PS	93.12
1wzn_A		252	SAM-dependent methyltransferase; structural genomi	93.09
3sm3_A		235	SAM-dependent methyltransferases; NESG, structural	92.95
3ou2_A		218	SAM-dependent methyltransferase; O-methyltransfera	92.58
3bgv_A		313	MRNA CAP guanine-N7 methyltransferase; alternative	92.53
1fp1_D		372	Isoliquiritigenin 2'-O-methyltransferase; protein-	92.53
3cgg_A		195	SAM-dependent methyltransferase; NP_600671.1, meth	92.42
1y8c_A		246	S-adenosylmethionine-dependent methyltransferase;	92.21
3g5t_A		299	Trans-aconitate 3-methyltransferase; structural ge	92.19
2p8j_A		209	S-adenosylmethionine-dependent methyltransferase;	91.8
3pfg_A		263	N-methyltransferase; N,N-dimethyltransferase, SAM	91.75
1nkv_A		256	Hypothetical protein YJHP; structural genomics, PS	91.61
3g07_A		292	7SK snRNA methylphosphate capping enzyme; structur	91.21
3bus_A		273	REBM, methyltransferase; rebeccamycin synthesis; H	91.14
3p9n_A		189	Possible methyltransferase (methylase); RV2966C, a	91.09
3mq2_A		218	16S rRNA methyltransferase; methyltranferase, ribo	91.03
3i9f_A		170	Putative type 11 methyltransferase; structural gen	90.86
1zg3_A		358	Isoflavanone 4'-O-methyltransferase; rossman fold,	90.82
1dus_A		194	MJ0882; hypothetical protein, methanococcus jannas	90.67
4htf_A		285	S-adenosylmethionine-dependent methyltransferase;	90.66
3iv6_A		261	Putative Zn-dependent alcohol dehydrogenase; alpha	90.6
2p7i_A		250	Hypothetical protein; putative methyltransferase,	90.52
3e8s_A		227	Putative SAM dependent methyltransferase; NP_74470	90.22
3giw_A		277	Protein of unknown function DUF574; rossmann-fold	89.97
2yxd_A		183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	89.89
3fzg_A		200	16S rRNA methylase; methyltransferase, plasmid, tr	89.86
4dcm_A		375	Ribosomal RNA large subunit methyltransferase G; 2	89.73
3uwp_A		438	Histone-lysine N-methyltransferase, H3 lysine-79;	89.72
2kw5_A		202	SLR1183 protein; structural genomics, northeast st	89.68
2yqz_A		263	Hypothetical protein TTHA0223; RNA methyltransfera	89.55
4e2x_A		416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	89.5
3lcv_B		281	Sisomicin-gentamicin resistance methylase SGM; ant	89.39
2ex4_A		241	Adrenal gland protein AD-003; methyltransferase, s	89.24
3r0q_C		376	Probable protein arginine N-methyltransferase 4.2;	88.68
2g72_A		289	Phenylethanolamine N-methyltransferase; HET: SAM F	88.61
1ve3_A		227	Hypothetical protein PH0226; dimer, riken structur	88.54
1vlm_A		219	SAM-dependent methyltransferase; possible histamin	88.02
3ggd_A		245	SAM-dependent methyltransferase; YP_325210.1, stru	87.89
2zfu_A		215	Nucleomethylin, cerebral protein 1; nucleolar prot	87.81
2p35_A		259	Trans-aconitate 2-methyltransferase; SAM dependent	87.74
3ege_A		261	Putative methyltransferase from antibiotic biosyn	87.58
2y1w_A		348	Histone-arginine methyltransferase CARM1; histone	87.49
3bkw_A		243	MLL3908 protein, S-adenosylmethionine dependent me	87.0
3cc8_A		230	Putative methyltransferase; structural genomics, j	86.52
3d2l_A		243	SAM-dependent methyltransferase; ZP_00538691.1, st	86.5
1wy7_A		207	Hypothetical protein PH1948; seven-stranded beta s	86.39
3hm2_A		178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	86.18
1ws6_A		171	Methyltransferase; structural genomics, riken stru	85.65
1pjz_A		203	Thiopurine S-methyltransferase; polymorphism, S-ad	85.19
3frh_A		253	16S rRNA methylase; methyltransferase domain, heli	84.95
1ri5_A		298	MRNA capping enzyme; methyltransferase, M7G, messe	84.89
3njr_A		204	Precorrin-6Y methylase; methyltransferase, decarbo	84.38
1xj5_A		334	Spermidine synthase 1; structural genomics, protei	84.32
2avn_A		260	Ubiquinone/menaquinone biosynthesis methyltransfe	83.86
2gb4_A		252	Thiopurine S-methyltransferase; 18204406, thiopuri	83.42
3bxo_A		239	N,N-dimethyltransferase; desosamine, sugar, carboh	83.42
1yzh_A		214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	83.36
3p2e_A		225	16S rRNA methylase; methyltransferase, transferase	83.0
3q7e_A		349	Protein arginine N-methyltransferase 1; HET: SAH;	82.71
4hg2_A		257	Methyltransferase type 11; structural genomics, PS	82.54
3dxy_A		218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	82.51
1jsx_A		207	Glucose-inhibited division protein B; methyltransf	82.32
1af7_A		274	Chemotaxis receptor methyltransferase CHER; chemot	81.43
3e05_A		204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	81.38
2fyt_A		340	Protein arginine N-methyltransferase 3; structural	81.22
2pjd_A		343	Ribosomal RNA small subunit methyltransferase C; g	81.18
1g6q_1		328	HnRNP arginine N-methyltransferase; SAM-binding do	80.81
3b3j_A		480	Histone-arginine methyltransferase CARM1; protein	80.8

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*	Back alignment and structure

Probab=97.98  E-value=0.00017  Score=67.42  Aligned_cols=109  Identities=13%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccc
Q 045762          119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMF  198 (373)
Q Consensus       119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l  198 (373)
                      +.-+|+|+|.|.|.    +...|+.+- ++|..+||||+.+...++.+.+++.++-  ...+.+|..  .++.++.    
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~--~D~~~~~----  136 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIE--GDIRDIA----  136 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEE--SCTTTCC----
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEee--ccccccc----
Confidence            34579999999985    455566553 3467899999999998988887765432  223455543  3334432    


Q ss_pred             cccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcE-EEEEeec
Q 045762          199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNI-VTIVEQE  243 (373)
Q Consensus       199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~v-v~~~E~e  243 (373)
                       ..+-+.+  -+.+.||++.++.+..+|+.+ +.|+|.- +++.|.-
T Consensus       137 -~~~~d~v--~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          137 -IENASMV--VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             -CCSEEEE--EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -ccccccc--eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence             2222343  345568999866677888887 6699985 4555654

PyMOL of 4gek

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}	Back alignment and structure

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}	Back alignment and structure

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*	Back alignment and structure

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}	Back alignment and structure

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}	Back alignment and structure

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*	Back alignment and structure

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}	Back alignment and structure

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*	Back alignment and structure

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}	Back alignment and structure

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*	Back alignment and structure

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}	Back alignment and structure

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}	Back alignment and structure

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*	Back alignment and structure

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*	Back alignment and structure

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41	Back alignment and structure

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*	Back alignment and structure

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}	Back alignment and structure

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A	Back alignment and structure

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*	Back alignment and structure

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}	Back alignment and structure

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*	Back alignment and structure

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42	Back alignment and structure

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*	Back alignment and structure

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*	Back alignment and structure

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}	Back alignment and structure

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}	Back alignment and structure

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A	Back alignment and structure

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*	Back alignment and structure

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*	Back alignment and structure

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}	Back alignment and structure

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}	Back alignment and structure

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*	Back alignment and structure

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A	Back alignment and structure

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}	Back alignment and structure

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*	Back alignment and structure

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}	Back alignment and structure

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*	Back alignment and structure

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}	Back alignment and structure

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*	Back alignment and structure

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A	Back alignment and structure

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*	Back alignment and structure

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*	Back alignment and structure

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*	Back alignment and structure

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}	Back alignment and structure

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18	Back alignment and structure

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}	Back alignment and structure

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...	Back alignment and structure

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*	Back alignment and structure

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*	Back alignment and structure

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}	Back alignment and structure

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}	Back alignment and structure

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43	Back alignment and structure

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}	Back alignment and structure

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*	Back alignment and structure

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*	Back alignment and structure

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*	Back alignment and structure

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43	Back alignment and structure

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}	Back alignment and structure

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}	Back alignment and structure

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*	Back alignment and structure

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21	Back alignment and structure

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}	Back alignment and structure

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}	Back alignment and structure

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}	Back alignment and structure

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}	Back alignment and structure

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*	Back alignment and structure

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4	Back alignment and structure

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}	Back alignment and structure

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}	Back alignment and structure

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A	Back alignment and structure

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}	Back alignment and structure

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*	Back alignment and structure

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}	Back alignment and structure

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}	Back alignment and structure

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}	Back alignment and structure

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*	Back alignment and structure

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A	Back alignment and structure

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A	Back alignment and structure

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*	Back alignment and structure

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*	Back alignment and structure

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42	Back alignment and structure

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}	Back alignment and structure

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...	Back alignment and structure

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43	Back alignment and structure

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41	Back alignment and structure

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}	Back alignment and structure

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}	Back alignment and structure

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}	Back alignment and structure

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}	Back alignment and structure

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A	Back alignment and structure

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}	Back alignment and structure

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}	Back alignment and structure

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}	Back alignment and structure

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32	Back alignment and structure

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}	Back alignment and structure

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46	Back alignment and structure

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36	Back alignment and structure

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*	Back alignment and structure

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*	Back alignment and structure

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}	Back alignment and structure

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A	Back alignment and structure

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41	Back alignment and structure

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*	Back alignment and structure

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}	Back alignment and structure

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53	Back alignment and structure

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*	Back alignment and structure

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*	Back alignment and structure

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}	Back alignment and structure

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*	Back alignment and structure

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20	Back alignment and structure

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*	Back alignment and structure

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0	Back alignment and structure

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*	Back alignment and structure

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}	Back alignment and structure

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6	Back alignment and structure

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		373
d1im8a_		225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.15
d1tw3a2		253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.42
d1qzza2		256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.42
d1jqea_		280	Histamine methyltransferase {Human (Homo sapiens)	96.61
d1vl5a_		231	Hypothetical protein BH2331 {Bacillus halodurans [	96.5
d1xxla_		234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.49
d1ve3a1		226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.36
d2gh1a1		281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.95
d1ri5a_		252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.93
d2i6ga1		198	Putative methyltransferase TehB {Salmonella typhim	95.86
d1fp1d2		244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.81
d1fp2a2		244	Isoflavone O-methyltransferase {Alfalfa (Medicago	95.79
d1vlma_		208	Possible histamine N-methyltransferase TM1293 {The	95.77
d2ex4a1		222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.43
d1y8ca_		246	Putative methyltransferase CAC2371 {Clostridium ac	95.36
d2fk8a1		280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.93
d2o57a1		282	Putative sarcosine dimethylglycine methyltransfera	94.66
d1wzna1		251	Hypothetical methyltransferase PH1305 {Archaeon Py	94.58
d1kyza2		243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	94.09
d1nkva_		245	Hypothetical Protein YjhP {Escherichia coli [TaxId	93.75
d1xtpa_		254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	93.01
d1pjza_		201	Thiopurine S-methyltransferase {Pseudomonas syring	92.19
d1xvaa_		292	Glycine N-methyltransferase {Rat (Rattus norvegicu	91.43
d2bzga1		229	Thiopurine S-methyltransferase {Human (Homo sapien	90.81
d1p91a_		268	rRNA methyltransferase RlmA {Escherichia coli [Tax	90.27
d2p7ia1		225	Hypothetical protein ECA1738 {Erwinia carotovora [	88.57
d1dusa_		194	Hypothetical protein MJ0882 {Archaeon Methanococcu	86.29
d1g6q1_		328	Arginine methyltransferase, HMT1 {Baker's yeast (S	83.88
d2avna1		246	Hypothetical methyltransferase TM1389 {Thermotoga	83.4
d1kpga_		285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	83.39

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.15  E-value=8.1e-05  Score=65.19  Aligned_cols=131  Identities=18%  Similarity=0.171  Sum_probs=82.3

Q ss_pred             HHHhhCCcchhhHHHhhHHHHhhhc--cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHH
Q 045762           92 IVYQACPYVKFAHFTANQAIFEAFE--AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRC  169 (373)
Q Consensus        92 ~~~~~~P~~~fa~~taNqaIleA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~r  169 (373)
                      .+....|+...-    ++.|.+-+.  ..+.-||+|+|.|.|.    +...|+... ..|..++|||+.+.+.++.+.++
T Consensus        14 ~i~~~iP~Y~~~----~~~i~~~~~~~~~~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~~ml~~A~~~   84 (225)
T d1im8a_          14 MIQRSVPGYSNI----ITAIGMLAERFVTADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQPMVERCRQH   84 (225)
T ss_dssp             HHHHHSTTHHHH----HHHHHHHHHHHCCTTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHH----HHHHHHHHHHhcCCCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCHHHHHHHHHH
Confidence            344456765543    344444333  2345689999999885    344455432 24788999999999989888877


Q ss_pred             HHHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE-ee
Q 045762          170 LTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV-EQ  242 (373)
Q Consensus       170 L~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~-E~  242 (373)
                      +.    ..+....++....+..+       ...++.-+|.|.+.+|++..+....+|+.+ +.|+|.-.++. |.
T Consensus        85 ~~----~~~~~~~~~~~~~d~~~-------~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          85 IA----AYHSEIPVEILCNDIRH-------VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             HH----TSCCSSCEEEECSCTTT-------CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hH----hhcccchhhhccchhhc-------cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            75    33333333332222222       223345566777889999766677888888 66999965444 54

PyMOL of d1im8a_

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}	Back information, alignment and structure

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}	Back information, alignment and structure

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}	Back information, alignment and structure

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}	Back information, alignment and structure

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}	Back information, alignment and structure

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure