Citrus Sinensis ID: 045763

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKRFPHGPPLECSVDNN
cccccccEEEcccEEEEccccEEEEEEcccccccEEEccEEEEEEEEEEEEEccccccEEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEccccccccEEEEEEEcccEEEEEEccEEEEEEEccccccccccccccEEEEEEEEccccccccccEEEEccccccEEEEEccEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccc
ccccccEEEcccccEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEEEHHHccccEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEcccHHcccccccccccEEEEEccccccHHHccccEEcccccccEEEEEcccccccEEccccccccccccccccccccccccHHHHccHHHHHHHHHHHHccEEEEcccccHccccccccccccccc
nfyddfeitwghgakihdngkVLTLnldksggsgfqskkeylfgkidmriklvpgysagtVTAYYLSskganwdeidfeflgnvtgepytlhtnvfsqgngdrerqfhlwfdpttdfhtysilwnpkrvifyaddvpirefknleylgipfpkkqpmrIYSSLwnadswatqggrikidwkyapftasysnftadaciwafgasscdtnspysnsnsktKVWLRHELDIAKKRKMRWVeknhmvydyckdhkrfphgpplecsvdnn
NFYDDFEitwghgakihdngKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDtnspysnsnsktkvwLRHELDIakkrkmrwveKNHMVYDYCKdhkrfphgpplecsvdnn
NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKRFPHGPPLECSVDNN
**YDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCD***********TKVWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKR**************
NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASS*********SNSKTKVWLRH*LDIA*KRKMRWVEKNHMVYDYCKDHKRFPHGPPLECSV***
NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKRFPHGPPLECSVDNN
NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFG******************VWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKRFPHGPPLEC*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NFYDDFEITWGHGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVEKNHMVYDYCKDHKRFPHGPPLECSVDNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q38910286 Probable xyloglucan endot yes no 0.966 0.902 0.650 1e-101
Q38907284 Probable xyloglucan endot no no 0.947 0.890 0.634 1e-101
Q38857284 Xyloglucan endotransgluco no no 0.970 0.911 0.634 1e-101
P24806269 Xyloglucan endotransgluco no no 0.913 0.907 0.596 2e-93
Q8LG58291 Probable xyloglucan endot no no 0.973 0.893 0.608 4e-93
Q38911289 Probable xyloglucan endot no no 0.962 0.889 0.612 8e-93
Q9FI31282 Xyloglucan endotransgluco no no 0.947 0.897 0.588 4e-92
Q9FKL9285 Probable xyloglucan endot no no 0.951 0.891 0.590 7e-92
Q9FKL8284 Putative xyloglucan endot no no 0.966 0.908 0.595 1e-90
Q9ZSU4287 Xyloglucan endotransgluco no no 0.966 0.898 0.618 3e-90
>sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1 Back     alignment and function desciption
 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/263 (65%), Positives = 200/263 (76%), Gaps = 5/263 (1%)

Query: 1   NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAG 59
           NF  D EITWG G  +I +NG +LTL+LDK+ GSGFQSK EYLFGKIDM+IKLV G SAG
Sbjct: 25  NFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAG 84

Query: 60  TVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHT 119
           TVTAYYL S G+ WDEIDFEFLGN++G+PYTLHTNVF+QG GDRE+QF LWFDPT+DFHT
Sbjct: 85  TVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHT 144

Query: 120 YSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKID 179
           YSILWNP+R+IF  D  PIREFKN+E  G  FPK QPMR+YSSLWNA+ WAT+GG +K D
Sbjct: 145 YSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTD 204

Query: 180 WKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVE 239
           W  APFTASY  F  +AC+   G SSC    P  +    T  WL  ELD   + +MRWV+
Sbjct: 205 WSKAPFTASYRGFNEEACVVINGQSSC----PNVSGQGSTGSWLSQELDSTGQEQMRWVQ 260

Query: 240 KNHMVYDYCKDHKRFPHGPPLEC 262
            N+M+Y+YC D KRFP G P EC
Sbjct: 261 NNYMIYNYCTDAKRFPQGLPREC 283
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q38907|XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2 Back     alignment and function description
>sp|Q38857|XTH22_ARATH Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1 Back     alignment and function description
>sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2 Back     alignment and function description
>sp|Q8LG58|XTH16_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2 Back     alignment and function description
>sp|Q38911|XTH15_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1 Back     alignment and function description
>sp|Q9FI31|XTH20_ARATH Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKL9|XTH12_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKL8|XTH13_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZSU4|XTH14_ARATH Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
363806744287 uncharacterized protein LOC100785313 pre 0.962 0.895 0.685 1e-108
224142267286 predicted protein [Populus trichocarpa] 0.973 0.909 0.685 1e-108
449457143283 PREDICTED: probable xyloglucan endotrans 0.970 0.915 0.686 1e-106
224122868298 predicted protein [Populus trichocarpa] 0.988 0.885 0.699 1e-106
224142269267 predicted protein [Populus trichocarpa] 0.970 0.970 0.680 1e-106
449517329283 PREDICTED: probable xyloglucan endotrans 0.970 0.915 0.683 1e-105
115334954285 xyloglucan endotransglucosylase/hydrolas 0.973 0.912 0.667 1e-105
401466646285 xyloglucan endotransglycosylase/hydrolas 0.966 0.905 0.667 1e-104
255570543284 conserved hypothetical protein [Ricinus 0.981 0.922 0.701 1e-104
255570541284 Xyloglucan endotransglucosylase/hydrolas 0.981 0.922 0.686 1e-104
>gi|363806744|ref|NP_001242530.1| uncharacterized protein LOC100785313 precursor [Glycine max] gi|255641964|gb|ACU21249.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/264 (68%), Positives = 216/264 (81%), Gaps = 7/264 (2%)

Query: 1   NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAG 59
           NF  DF+ITWG G AKI +N  +LTL+LDK+ GSGFQSK EYLFGKIDM++KLVPG SAG
Sbjct: 28  NFNQDFQITWGDGRAKILNNANLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 87

Query: 60  TVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHT 119
           TVTAYYLSSKG+ WDEIDFEFLGN++G+PY LHTNVFSQG G+RE+QF+LWFDPT DFHT
Sbjct: 88  TVTAYYLSSKGSTWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHT 147

Query: 120 YSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKID 179
           YSILWNP+R++F  D  PIREFKNLE +G+PFPK+QPMRIYSSLWNAD WAT+GGRIK D
Sbjct: 148 YSILWNPQRIVFSVDGTPIREFKNLESIGVPFPKRQPMRIYSSLWNADDWATRGGRIKTD 207

Query: 180 WKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVE 239
           W  APFTASY NF A+AC+W  G S+C +NSP SN+      WL  ELD   ++++ WV+
Sbjct: 208 WSKAPFTASYRNFNANACVWNRGKSTCKSNSPSSNA------WLSQELDSTAQQRLSWVQ 261

Query: 240 KNHMVYDYCKDHKRFPHGPPLECS 263
           KN+M+Y+YC D  RF  G PLEC+
Sbjct: 262 KNYMIYNYCSDKNRFAQGLPLECT 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142267|ref|XP_002324480.1| predicted protein [Populus trichocarpa] gi|222865914|gb|EEF03045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457143|ref|XP_004146308.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like isoform 2 [Cucumis sativus] gi|29500891|emb|CAD87535.1| putative xyloglucan endotransglycosylase [Cucumis sativus] gi|29500899|emb|CAD87533.1| putative xyloglucan endotransglycosylase [Cucumis sativus] Back     alignment and taxonomy information
>gi|224122868|ref|XP_002318936.1| predicted protein [Populus trichocarpa] gi|222857312|gb|EEE94859.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142269|ref|XP_002324481.1| predicted protein [Populus trichocarpa] gi|222865915|gb|EEF03046.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449517329|ref|XP_004165698.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|115334954|gb|ABI94063.1| xyloglucan endotransglucosylase/hydrolase 3 [Cucumis melo] Back     alignment and taxonomy information
>gi|401466646|gb|AFP93557.1| xyloglucan endotransglycosylase/hydrolase 1 [Neolamarckia cadamba] Back     alignment and taxonomy information
>gi|255570543|ref|XP_002526229.1| conserved hypothetical protein [Ricinus communis] gi|223534468|gb|EEF36170.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255570541|ref|XP_002526228.1| Xyloglucan endotransglucosylase/hydrolase protein 22 precursor, putative [Ricinus communis] gi|223534467|gb|EEF36169.1| Xyloglucan endotransglucosylase/hydrolase protein 22 precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2174597284 XTH25 "xyloglucan endotransglu 0.943 0.887 0.637 5.9e-96
TAIR|locus:2174497284 TCH4 "Touch 4" [Arabidopsis th 0.970 0.911 0.638 1.1e-94
TAIR|locus:2117567286 XTR6 "xyloglucan endotransglyc 0.966 0.902 0.650 2.3e-94
TAIR|locus:2128936269 XTH24 "xyloglucan endotransglu 0.734 0.728 0.685 4.4e-90
TAIR|locus:2053967305 XTH21 "xyloglucan endotransglu 0.996 0.872 0.572 4.6e-89
TAIR|locus:2095168291 XTH16 "xyloglucan endotransglu 0.973 0.893 0.608 4.6e-89
TAIR|locus:2162652282 XTH20 "xyloglucan endotransglu 0.947 0.897 0.588 7.5e-89
TAIR|locus:2117492287 XTH14 "xyloglucan endotransglu 0.966 0.898 0.622 9.6e-89
TAIR|locus:2129445289 XTH15 "xyloglucan endotransglu 0.962 0.889 0.612 1.2e-88
TAIR|locus:2174572285 XTH12 "xyloglucan endotransglu 0.951 0.891 0.601 1.2e-88
TAIR|locus:2174597 XTH25 "xyloglucan endotransglucosylase/hydrolase 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 167/262 (63%), Positives = 206/262 (78%)

Query:     2 FYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGT 60
             F  +F+ITWG G  K+ +NG++LTL+LD++ GSGFQ+KKEYLFGKIDM++KLVPG SAGT
Sbjct:    30 FDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGT 89

Query:    61 VTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTY 120
             VTAYYL SKG  WDEIDFEFLGN+TG+PYT+HTNV++QG GDRE+QFHLWFDPT DFHTY
Sbjct:    90 VTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTY 149

Query:   121 SILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDW 180
             S+LWNP  ++F  DD+P+REFKNL+++GI +PK QPMR+YSSLWNAD WAT+GG +K DW
Sbjct:   150 SVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDW 209

Query:   181 KYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVEK 240
               APFTASY NF ADAC+ + G SSC   SP          W    LD+  + KMR V++
Sbjct:   210 SKAPFTASYRNFRADACVSSGGRSSCPAGSPR---------WFSQRLDLTAEDKMRVVQR 260

Query:   241 NHMVYDYCKDHKRFPHGPPLEC 262
              +M+Y+YC D KRFP G P EC
Sbjct:   261 KYMIYNYCTDTKRFPQGFPKEC 282
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0009832 "plant-type cell wall biogenesis" evidence=ISS
TAIR|locus:2174497 TCH4 "Touch 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117567 XTR6 "xyloglucan endotransglycosylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128936 XTH24 "xyloglucan endotransglucosylase/hydrolase 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053967 XTH21 "xyloglucan endotransglucosylase/hydrolase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095168 XTH16 "xyloglucan endotransglucosylase/hydrolase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162652 XTH20 "xyloglucan endotransglucosylase/hydrolase 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117492 XTH14 "xyloglucan endotransglucosylase/hydrolase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129445 XTH15 "xyloglucan endotransglucosylase/hydrolase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174572 XTH12 "xyloglucan endotransglucosylase/hydrolase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41638XTHA_PHAAN2, ., 4, ., 1, ., 2, 0, 70.53510.91380.8356N/Ano
Q41542XTH_WHEAT2, ., 4, ., 1, ., 2, 0, 70.52170.90260.8225N/Ano
P93349XTH_TOBAC2, ., 4, ., 1, ., 2, 0, 70.50550.96620.8745N/Ano
Q38910XTH23_ARATH2, ., 4, ., 1, ., 2, 0, 70.65010.96620.9020yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.207LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.2850.1
hypothetical protein (267 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-149
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 1e-109
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 3e-80
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 2e-30
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 1e-26
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 2e-21
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 3e-17
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 6e-14
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 5e-12
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 0.001
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  416 bits (1073), Expect = e-149
 Identities = 148/264 (56%), Positives = 187/264 (70%), Gaps = 7/264 (2%)

Query: 1   NFYDDFEITWG-HGAKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAG 59
           +F ++F +TWG    ++ ++G  + L LD+S GSGF+SK +YLFG   MRIKL PG SAG
Sbjct: 5   SFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAG 64

Query: 60  TVTAYYLSSKGANW-DEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFH 118
           TVTA+YLSS+G +  DEIDFEFLGNVTG+PYTL TNVF+ G G RE++ +LWFDPT DFH
Sbjct: 65  TVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFH 124

Query: 119 TYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKI 178
           TYSILWNP +++FY DDVPIR FKN E LG+P+P  QPM +Y+S+W+   WATQGGR+KI
Sbjct: 125 TYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRVKI 184

Query: 179 DWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWV 238
           DW YAPF ASY +F  D C+   G S    +      N  T      +L   ++R M WV
Sbjct: 185 DWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGST----YQQLSANQQRAMEWV 240

Query: 239 EKNHMVYDYCKDHKRFPHGPPLEC 262
            +N+MVYDYC D KR+P  PP EC
Sbjct: 241 RRNYMVYDYCDDRKRYP-VPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.97
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.97
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.97
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.96
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.92
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.82
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.64
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.49
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 92.88
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 91.27
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 88.39
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 88.14
smart00560133 LamGL LamG-like jellyroll fold domain. 87.82
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 85.34
cd00110151 LamG Laminin G domain; Laminin G-like domains are 83.69
KOG1834 952 consensus Calsyntenin [Extracellular structures] 80.46
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4e-83  Score=581.35  Aligned_cols=258  Identities=56%  Similarity=1.024  Sum_probs=239.2

Q ss_pred             CCccccceeeCCC-eEEecCCCEEEEEEcCCCCCeEEEcceeEeEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeec
Q 045763            1 NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFE   79 (267)
Q Consensus         1 ~f~~~~~~~w~~~-~~~~~~G~~l~L~ld~~sGsg~~Sk~~~~YG~~eariKlp~g~s~G~~~Afwl~~~~~~~~EID~E   79 (267)
                      +|.++|.++|+.+ +.+.++|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.++.+||||||
T Consensus        26 ~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEIDiE  105 (291)
T PLN03161         26 DFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEIDFE  105 (291)
T ss_pred             cccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeEEEE
Confidence            4899999999999 888888889999999999999999999999999999999998889999999999977789999999


Q ss_pred             cCCCCCCCceeEEeeeecCCCCCcceEEEcCCCCCCCcEEEEEEEeCCceEEEECCeeEEEEeccccCCCCCCCCCCcEE
Q 045763           80 FLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRI  159 (267)
Q Consensus        80 ~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l  159 (267)
                      |||+++++++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++||+|
T Consensus       106 fLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i  185 (291)
T PLN03161        106 FLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRV  185 (291)
T ss_pred             ecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999987777889999889999


Q ss_pred             EEeeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeeecCCC--CCcCCCCCCCCCCCcccccccc----ccCCHHHHH
Q 045763          160 YSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFG--ASSCDTNSPYSNSNSKTKVWLR----HELDIAKKR  233 (267)
Q Consensus       160 ~lnlw~gg~Wat~GG~~~~d~~~aPf~a~~~~~~v~~c~~~~~--~~~c~~~~~~~~~~~~~~~~~~----~~l~~~~~~  233 (267)
                      ++|||+|++|||+||++||||+++||+|.|++|++++|.++++  ...|...+..        .||+    ++|+++|++
T Consensus       186 ~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~--------~~~~~~~~~~l~~~~~~  257 (291)
T PLN03161        186 YSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPS--------NWWTSPSYSQLTNAQLT  257 (291)
T ss_pred             EEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcc--------ccccCccccCCCHHHHH
Confidence            9999999999999999999999999999999999999987643  3468643211        5776    479999999


Q ss_pred             HHHHHhhcCeEEeccCCCCCCCCCCCCCCcCCC
Q 045763          234 KMRWVEKNHMVYDYCKDHKRFPHGPPLECSVDN  266 (267)
Q Consensus       234 ~~~~~~~~~~~y~yc~d~~r~~~~~p~ec~~~~  266 (267)
                      +|+|||+||||||||+|++|||+++||||.++|
T Consensus       258 ~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~  290 (291)
T PLN03161        258 QMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ  290 (291)
T ss_pred             HHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence            999999999999999999999988899999876

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG1834 consensus Calsyntenin [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 3e-72
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 7e-53
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 7e-53
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 2e-51
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 5e-51
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 1e-13
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 1e-10
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 1e-10
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 1e-10
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 1e-10
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 1e-10
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 2e-10
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 2e-10
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 6e-10
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 5e-09
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 3e-08
3axd_A249 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 5e-07
3h0o_A240 The Importance Of Ch-Pi Stacking Interactions Betwe 4e-06
2r49_A241 Mutational And Structural Studies Of E85i Reveal Th 4e-06
3hr9_A241 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 8e-06
1mve_A243 Crystal Structure Of A Natural Circularly-Permutate 2e-05
1zm1_A241 Crystal Structures Of Complex F. Succinogenes 1,3-1 3e-05
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (684), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/256 (52%), Positives = 169/256 (66%), Gaps = 12/256 (4%)
Query: 15  KIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWD 74
           K  + G  + L+LDK  G+GFQSK  YLFG   M++KLVPG SAGTVTA+YLSS+ +  D
Sbjct: 31  KYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHD 90
Query: 75  EIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYAD 134
           EIDFEFLGN TG+PY L TNVF+ G GDRE++ +LWFDPT +FH YS+LWN   ++F  D
Sbjct: 91  EIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVD 150
Query: 135 DVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTA 194
           DVPIR FKN + LG+ FP  QPM+IYSSLWNAD WAT+GG  K DW  APF ASY +F  
Sbjct: 151 DVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHI 210
Query: 195 DACIWAFGASSCDTNSPYSNSNSKTKVWLRHE---LDIAKKRKMRWVEKNHMVYDYCKDH 251
           D C  +  A  C T           + W + E   LD  + R++ WV + + +Y+YC D 
Sbjct: 211 DGCEASVEAKFCATQG--------ARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDR 262
Query: 252 KRFPHGPPLECSVDNN 267
            R+P  PP EC  D +
Sbjct: 263 SRYPSMPP-ECKRDRD 277
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form Length = 249 Back     alignment and structure
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between Carbohydrate And Aromatic Residues In Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase Length = 240 Back     alignment and structure
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The Flexible Loops Of Fibrobacter Succinogenes 1,3-1,4-beta-d- Glucanaseglucanase Length = 241 Back     alignment and structure
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D- Glucanase F40i Mutant Length = 241 Back     alignment and structure
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes Length = 243 Back     alignment and structure
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes 1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 1e-112
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 9e-97
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 2e-65
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 1e-64
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 1e-61
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 8e-59
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 2e-58
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 9e-55
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 2e-52
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-21
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 8e-15
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 1e-11
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 2e-11
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 3e-11
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 1e-10
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 9e-10
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 2e-09
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 3e-09
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 6e-09
3rq0_A269 Glycosyl hydrolases family protein 16; structural 2e-08
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 2e-07
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 2e-07
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 2e-06
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 2e-05
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 8e-05
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 6e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  324 bits (832), Expect = e-112
 Identities = 134/266 (50%), Positives = 169/266 (63%), Gaps = 7/266 (2%)

Query: 1   NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAG 59
            F  ++  TW     K  + G  + L+LDK  G+GFQSK  YLFG   M++KLVPG SAG
Sbjct: 16  AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 75

Query: 60  TVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHT 119
           TVTA+YLSS+ +  DEIDFEFLGN TG+PY L TNVF+ G GDRE++ +LWFDPT +FH 
Sbjct: 76  TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 135

Query: 120 YSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKID 179
           YS+LWN   ++F  DDVPIR FKN + LG+ FP  QPM+IYSSLWNAD WAT+GG  K D
Sbjct: 136 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 195

Query: 180 WKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVE 239
           W  APF ASY +F  D C  +  A  C T                 +LD  + R++ WV 
Sbjct: 196 WSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQ-----KEFQDLDAFQYRRLSWVR 250

Query: 240 KNHMVYDYCKDHKRFPHGPPLECSVD 265
           + + +Y+YC D  R+P   P EC  D
Sbjct: 251 QKYTIYNYCTDRSRYP-SMPPECKRD 275
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Length = 346 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 100.0
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 100.0
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 100.0
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.97
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.95
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.94
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.85
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.78
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 91.16
3h3l_A241 Putative sugar hydrolase; YP_001304206.1, structur 80.87
4dqa_A355 Uncharacterized protein; two domains structure, DU 80.18
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-78  Score=550.24  Aligned_cols=254  Identities=53%  Similarity=0.992  Sum_probs=236.5

Q ss_pred             CCccccceeeCCC-eEEecCCCEEEEEEcCCCCCeEEEcceeEeEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeec
Q 045763            1 NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFE   79 (267)
Q Consensus         1 ~f~~~~~~~w~~~-~~~~~~G~~l~L~ld~~sGsg~~Sk~~~~YG~~eariKlp~g~s~G~~~Afwl~~~~~~~~EID~E   79 (267)
                      +|.++|+++|+++ |++.++|+.|+|+|++.+|++|.||+.|+||+||||||||+|+++|+||||||++++|.++|||||
T Consensus        16 ~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~p~~gEIDmE   95 (278)
T 1umz_A           16 AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFE   95 (278)
T ss_dssp             CHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEEEE
T ss_pred             cccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCCCCCCeEEEE
Confidence            5899999999999 999989989999999999999999999999999999999999888999999999988899999999


Q ss_pred             cCCCCCCCceeEEeeeecCCCCCcceEEEcCCCCCCCcEEEEEEEeCCceEEEECCeeEEEEeccccCCCCCCCCCCcEE
Q 045763           80 FLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRI  159 (267)
Q Consensus        80 ~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l  159 (267)
                      ++|+++++++++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++++++++.+..+.+||+++||+|
T Consensus        96 ~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P~~l  175 (278)
T 1umz_A           96 FLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKI  175 (278)
T ss_dssp             EECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEE
T ss_pred             EeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcCCCceEE
Confidence            99999889999999999999999999999999999999999999999999999999999999987766788997799999


Q ss_pred             EEeeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeeecCCCCCcCCCCCCCCCCCccccccccc----cCCHHHHHHH
Q 045763          160 YSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRH----ELDIAKKRKM  235 (267)
Q Consensus       160 ~lnlw~gg~Wat~GG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~  235 (267)
                      +||||+||+|+++||++++||.++||+++|+.+++.+|..+.+...|...+.         .||++    +|++.|+++|
T Consensus       176 ilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~~~~c~~~~~---------~~~~~~~~~~l~~~~~~~~  246 (278)
T 1umz_A          176 YSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGA---------RWWDQKEFQDLDAFQYRRL  246 (278)
T ss_dssp             EEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCCTTTTC---------SGGGSGGGSSCCHHHHHHH
T ss_pred             EEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCCCCccCCCcc---------cccccCccccCCHHHHHHH
Confidence            9999999999999998899999999999999999999987544456865432         57775    7999999999


Q ss_pred             HHHhhcCeEEeccCCCCCCCCCCCCCCcC
Q 045763          236 RWVEKNHMVYDYCKDHKRFPHGPPLECSV  264 (267)
Q Consensus       236 ~~~~~~~~~y~yc~d~~r~~~~~p~ec~~  264 (267)
                      +|||+||||||||+|++|||+ +||||.+
T Consensus       247 ~~~~~~~~~y~yc~d~~r~~~-~~~ec~~  274 (278)
T 1umz_A          247 SWVRQKYTIYNYCTDRSRYPS-MPPECKR  274 (278)
T ss_dssp             HHHHHHTEEEEGGGCTTTCSS-CCTHHHH
T ss_pred             HHHHHCCeEEecCCCCCcCCC-CCcccCC
Confidence            999999999999999999998 8999974
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomic center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 1e-103
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 2e-44
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 4e-24
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 2e-18
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 1e-10
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 2e-05
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 0.001
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  298 bits (763), Expect = e-103
 Identities = 134/266 (50%), Positives = 170/266 (63%), Gaps = 7/266 (2%)

Query: 1   NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAG 59
            F  ++  TW     K  + G  + L+LDK  G+GFQSK  YLFG   M++KLVPG SAG
Sbjct: 5   AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 64

Query: 60  TVTAYYLSSKGANWDEIDFEFLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHT 119
           TVTA+YLSS+ +  DEIDFEFLGN TG+PY L TNVF+ G GDRE++ +LWFDPT +FH 
Sbjct: 65  TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 124

Query: 120 YSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRIYSSLWNADSWATQGGRIKID 179
           YS+LWN   ++F  DDVPIR FKN + LG+ FP  QPM+IYSSLWNAD WAT+GG  K D
Sbjct: 125 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 184

Query: 180 WKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRHELDIAKKRKMRWVE 239
           W  APF ASY +F  D C  +  A  C T         +       +LD  + R++ WV 
Sbjct: 185 WSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEF-----QDLDAFQYRRLSWVR 239

Query: 240 KNHMVYDYCKDHKRFPHGPPLECSVD 265
           + + +Y+YC D  R+P   P EC  D
Sbjct: 240 QKYTIYNYCTDRSRYP-SMPPECKRD 264
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.97
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.96
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.96
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 92.81
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 92.16
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 91.67
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 90.6
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 89.34
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 89.04
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 88.92
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 88.18
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 86.04
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 85.76
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 84.5
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=1.1e-79  Score=554.08  Aligned_cols=255  Identities=53%  Similarity=0.994  Sum_probs=239.3

Q ss_pred             CCccccceeeCCC-eEEecCCCEEEEEEcCCCCCeEEEcceeEeEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeec
Q 045763            1 NFYDDFEITWGHG-AKIHDNGKVLTLNLDKSGGSGFQSKKEYLFGKIDMRIKLVPGYSAGTVTAYYLSSKGANWDEIDFE   79 (267)
Q Consensus         1 ~f~~~~~~~w~~~-~~~~~~G~~l~L~ld~~sGsg~~Sk~~~~YG~~eariKlp~g~s~G~~~Afwl~~~~~~~~EID~E   79 (267)
                      +|+++|.++|+++ +++.++|..|+|+||+.+||+|+||+.|+||+||||||||+|+++|++++|||++.++.++|||||
T Consensus         5 ~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~~~~dEIDiE   84 (267)
T d1umza_           5 AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFE   84 (267)
T ss_dssp             CHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEEEE
T ss_pred             cCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCCCCCCeEEEE
Confidence            5899999999999 999999999999999999999999999999999999999999888999999999888899999999


Q ss_pred             cCCCCCCCceeEEeeeecCCCCCcceEEEcCCCCCCCcEEEEEEEeCCceEEEECCeeEEEEeccccCCCCCCCCCCcEE
Q 045763           80 FLGNVTGEPYTLHTNVFSQGNGDRERQFHLWFDPTTDFHTYSILWNPKRVIFYADDVPIREFKNLEYLGIPFPKKQPMRI  159 (267)
Q Consensus        80 ~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l  159 (267)
                      ++|++.++++++|||+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++|.++||+|
T Consensus        85 ~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm~i  164 (267)
T d1umza_          85 FLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKI  164 (267)
T ss_dssp             EECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEE
T ss_pred             EecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999888899998899999


Q ss_pred             EEeeeeCCCCCCCCCccccCCCCCCEEEEEeEEEEeeeecCCCCCcCCCCCCCCCCCccccccccc----cCCHHHHHHH
Q 045763          160 YSSLWNADSWATQGGRIKIDWKYAPFTASYSNFTADACIWAFGASSCDTNSPYSNSNSKTKVWLRH----ELDIAKKRKM  235 (267)
Q Consensus       160 ~lnlw~gg~Wat~GG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~  235 (267)
                      ++|||+||+|||+||++++||+++||+|.|++|+|.+|.+++....|.....         .||++    +|++.|+++|
T Consensus       165 ~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~  235 (267)
T d1umza_         165 YSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGA---------RWWDQKEFQDLDAFQYRRL  235 (267)
T ss_dssp             EEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCCTTTTC---------SGGGSGGGSSCCHHHHHHH
T ss_pred             EEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCCcccCCCCC---------ccccccccccCCHHHHHHH
Confidence            9999999999999999999999999999999999999998766666654432         56663    7999999999


Q ss_pred             HHHhhcCeEEeccCCCCCCCCCCCCCCcCC
Q 045763          236 RWVEKNHMVYDYCKDHKRFPHGPPLECSVD  265 (267)
Q Consensus       236 ~~~~~~~~~y~yc~d~~r~~~~~p~ec~~~  265 (267)
                      +|||+||||||||+|++|||. +||||.++
T Consensus       236 ~~~~~~~~~y~yC~d~~r~~~-~p~EC~~~  264 (267)
T d1umza_         236 SWVRQKYTIYNYCTDRSRYPS-MPPECKRD  264 (267)
T ss_dssp             HHHHHHTEEEEGGGCTTTCSS-CCTHHHHH
T ss_pred             HHHHHCCcEEccCCCCCcCCC-CCcccCCC
Confidence            999999999999999999996 89999764
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure