Citrus Sinensis ID: 045767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------
Protein Sequence
CDIQTRMEEDKESGVVQRSRQMRQNYSGPTNQANKTNCSPEYIRSRRTGNRRARNLNSDSGQAELSFKNKRGRMKGKIARELFPDRKESYEECMGEGPTRMVRDAVHWSKGWLTDDEEEQLQDKNNDEDQLEGYSSEIDKGSLYKLRDAETSEDVGDWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVPNTSLQSIANYSHSATNNQQVHIVLEV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEccHHHHHHHHHHHHHHHccEEEEEEEccEEEEEEEccccccEEEEEEEEEcccEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHccccccEEEEEEccccccccccEEEEEccccccHHHHHHcccEEEEEcccccccccccEEEEEEEEcccccccEEEEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEccEEEEEEEcccEEEEEEccccEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEcHHcccEEEEEEcccccccccccccccccccccHHHHccccccccEEEEccccccccccEEEEEcccccccEEEccccccccccccccccccccccccccEccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHEEEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEcccEEEEEEEcccEEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccEcccccccccccccccccEEEccccccccccEEEEEccccccccEEEEc
Coil and Loop (DISEMBL)
cdiqtrmeedkesgvVQRSRQMrqnysgptnqanktncspeyirsrrtgnrrarnlnsdsgqaELSFKNKRGRMKGKIARELFPDRKESYeecmgegptrmvrdavhwskgwltddeeeqlqdknndedqlegysseidkgslyklrdaetsedvgdwvkfddtprhkmvlyqgqrfrdVGEFRKAVQVFAVREGFKLCVmenrshvvcyecsdlrcdwviqagrvsdgttfivtdfmpqhtcirpplkfqpqskWISAIYLHRwklqpkvstVEIRDEIEatygvvcpegkllSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVlletdgdengegkrlNKMFVCWERTSYAFKYHCRGilavdgwkmnnpyKSVMLVAAgldgnngilpvafceVDVEDLESWVYFLKNINNALRlengkgicilgdgdngiDYAVEEFLPEAAYRQCCHKVFTEMVkrfpaapvqhLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTnwsswalfsipkwvkctsvtlsITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVeqngttlkltDTISMFYDLDMEAMScscglwqisgipcAHACRAIQLNMGNVEEYVDNMMSVQNYCstyapgmaqlpkehdwksdagniilppmihspkavsakgsneivpntslqsIANYSHSATNNQQVHIVLEV
Flexible Loop (DISEMBL)
cdiqtrmeedkesgvvqrsrqmrqnysgptnqanktncspeyirsrrtgnrrarnlnsdsgqaelsfknkrgrmkgkiarelfpdrkeSYEECmgegptrmvRDAVHWSKGWLTDDEEEQLQDknndedqlegysseidkgslyklrdaetsedvgdwvkfddtprHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATygvvcpegkLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLetdgdengegkrLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVwnwyrekvtptvrevihdrtidgqrfamveqngttlkLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVPNTSLQSIANyshsatnnqqVHIVLEV
Low Complexity Region (SEG)
CDIQTRMEEDKESGVVQRSRQMRQNYSGPTNQANKTNCSPEYIrsrrtgnrrarnlnSDSGQAELSFKNKRGRMKGKIARELFPDRKESYEECMGEGPTRMVRDAVHWSKGWLTDDEEEQLQDKNNDEDQLEGYSSEIDKGSLYKLRDAETSEDVGDWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVPNTSLQSIANYSHSATNNQQVHIVLEV
Disordered region (IsUnstruct)
*****************************************************************************************************VRDAVHWSKGWL****************************************DVGDWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETD******GKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILP*********************************************
Disordered Region (DISOPRED)
****T******************************************************************************************E***RM*****HWSKGWLTDD*****************************************WVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNII*************************************NQQVHIV*EV
Disordered Region (DISEMBL)
**********************RQNYSGPTNQANKTNCSPEYIRSRRTGNRRARNLNSDSGQAELSFKNKRGRMKGKIARELFPDRKESYEECMGEGPTRMVRDAVHWSKGWLTDDEEEQLQDKNNDEDQLEGYSSEIDKGSLYKLRDAETSEDVGDWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVPNTSLQSIANYSHSATNNQQVHIVLEV
Disordered Region (DISPRO)
CDIQTRMEEDKESGVVQRSRQMRQN*******ANKTNCSPEYIRSRRTG*RRARNLNSDSGQAELSFKNKRGRMKGKIAREL**************************************************************************DWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMI*********GSNEIV**TSLQSIANYSHSATNNQQVHIVLEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CDIQTRMEEDKESGVVQRSRQMRQNYSGPTNQANKTNCSPEYIRSRRTGNRRARNLNSDSGQAELSFKNKRGRMKGKIARELFPDRKESYEECMGEGPTRMVRDAVHWSKGWLTDDEEEQLQDKNNDEDQLEGYSSEIDKGSLYKLRDAETSEDVGDWVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVPNTSLQSIANYSHSATNNQQVHIVLEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	737
225429092	583	PREDICTED: uncharacterized protein LOC10	0.697	0.881	0.241	4e-43
297601393	1015	Os03g0648200 [Oryza sativa Japonica Grou	0.743	0.539	0.228	2e-42
90265237	1030	H0322F07.9 [Oryza sativa Indica Group] g	0.746	0.533	0.226	2e-42
53370698	1030	transposon protein, putative, mutator su	0.743	0.532	0.228	3e-42
225450448	768	PREDICTED: uncharacterized protein LOC10	0.663	0.636	0.239	4e-42
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.663	0.454	0.239	5e-42
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.706	0.454	0.230	1e-41
356527977	582	PREDICTED: uncharacterized protein LOC10	0.697	0.883	0.247	1e-41
356565507	748	PREDICTED: uncharacterized protein LOC10	0.660	0.651	0.226	2e-41
225432189	746	PREDICTED: uncharacterized protein LOC10	0.690	0.682	0.231	3e-41

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/539 (24%), Positives = 247/539 (45%), Gaps = 25/539 (4%)

Query: 174 GQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFI 233
           GQ F DV  FR A++  A+ + F+L ++++       +C+   C W I+A ++ +  TF 
Sbjct: 9   GQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTFT 68

Query: 234 VTDFMPQHTCIRPPLKFQPQSK--WISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEG 291
           +      HTC +       Q+   WI +    R +        +I  +I   YG+  P  
Sbjct: 69  IRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 292 KLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFV 351
           +   A  R    +     +GY  L    +E++R +  ++  + T G +N    R  ++FV
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGADN----RFQRLFV 184

Query: 352 CWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESW 411
            +  + Y F   C  I+ + G ++ + Y   +L A   D + G+ P+AF  VD E+ ESW
Sbjct: 185 SFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDESW 244

Query: 412 VYFLKNINNALRL--ENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFP 469
           ++FL  +  AL +  EN   +  L DG  GI  AV+   P +++  C   +   + K F 
Sbjct: 245 MWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEFK 304

Query: 470 AAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWAL--FSIPKWVKCT 527
            + + HL W A  +T+  +F + M  I++ S E  +W+ Q   S WAL  F   ++   +
Sbjct: 305 NSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYFEGTRYGHLS 364

Query: 528 SVTLSITDKLHTRLRQYLEMSIARRFTGI-ARLTADLFERRRMAVWNWYREKVTPTVREV 586
           S      ++ +  + +  E+ I +    I ++L A+ FE RR+   +W+   + P+  + 
Sbjct: 365 SN----IEEFNKWILEARELPIIQVIEQIHSKLMAE-FEERRLKSNSWF-SVLAPSADKR 418

Query: 587 IHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHACRAIQ 646
           + +       + ++  +    ++  +      +++    CSC  WQ+ GIPC+HA  A+ 
Sbjct: 419 MMEAIGRASTYQVLRSDEVEFEVL-SAERSDIVNIGTQCCSCRDWQLYGIPCSHAVAALL 477

Query: 647 LNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWK-------SDAGNIILPPMIHSP 698
               +V  + +   +V +Y + Y+  +  +P + +W+        D   ++ PP    P
Sbjct: 478 SCRKDVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWRRTVEAPVDDDTPVVRPPKFRRP 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601393|ref|NP_001050777.2| Os03g0648200 [Oryza sativa Japonica Group] gi|255674744|dbj|BAF12691.2| Os03g0648200 [Oryza sativa Japonica Group]

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/574 (22%), Positives = 252/574 (43%), Gaps = 26/574 (4%)

Query: 148 DAETSEDVGDWVKFD-------DTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCV 200
           +A  S+D G  +KF        + P  K+    G  F  V + R+A+  ++VR   ++ +
Sbjct: 281 NAADSDDEGVRLKFKSFAEEDLNNPNFKV----GLVFPSVEKLRQAITEYSVRNRVEIKM 336

Query: 201 MENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAI 260
             N    +   C++  C W + A   S    F+V     +HTC +  +  +  SKW++  
Sbjct: 337 PRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKRCTSKWLAGK 395

Query: 261 YLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKK 320
           Y+  ++   K+S       ++  + +     KL  A   A   +  D  + Y  L    K
Sbjct: 396 YIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGK 455

Query: 321 EMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYK 380
           E+ R +  +   L+ DG         ++ ++  +     F   CR ++ +DG  +   Y 
Sbjct: 456 ELRRSNPGSSFFLKLDGS------LFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYG 509

Query: 381 SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGI 440
             +L A G+D N+ I P+AF  V+VE L +W +FL+ + N L +EN     I+ D   G+
Sbjct: 510 GQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGL 569

Query: 441 DYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQS 500
             AV++  PE+ +R C   +++    +F    +++  W+  RS+S   ++K MD+++  +
Sbjct: 570 IPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLN 629

Query: 501 KECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLT 560
           K  +EWL +   ++W      ++ KC  +  +  +  +  + +  E+ I    T + ++ 
Sbjct: 630 KSAYEWLEKLPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI---LTMLEKIK 686

Query: 561 ADLFER---RRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFY 617
             L  R   ++  + + ++  + P +R+ +  +  D          G  +         Y
Sbjct: 687 GQLMTRHFNKQKELADQFQGLICPKIRKKVL-KNADAANTCYALPAGQGIFQVHEREYQY 745

Query: 618 DLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP 677
            +D+ AM C C  W ++GIPC HA   ++    N E  + N  +   +   Y   +    
Sbjct: 746 IVDINAMYCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCN 805

Query: 678 KEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVP 711
            +  W++  G  I PP ++  KA   K S    P
Sbjct: 806 DKSKWENVNGPEIKPP-VYEKKAGRPKKSRRKAP 838

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265237|emb|CAH67772.1| H0322F07.9 [Oryza sativa Indica Group] gi|90399190|emb|CAH68177.1| H0403D02.5 [Oryza sativa Indica Group]

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/575 (22%), Positives = 251/575 (43%), Gaps = 25/575 (4%)

Query: 148 DAETSEDVGDWVKFD-------DTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCV 200
           +A  S+D G  +KF        + P  K+    G  F  V + R+A+  ++VR   ++ +
Sbjct: 296 NAADSDDEGVRLKFKSFAEEDLNNPNFKV----GLVFPSVEKLRQAITEYSVRNRVEIKM 351

Query: 201 MENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAI 260
             N    +   C++  C W + A   S    F+V  +  +HTC +  +  +  SKW++  
Sbjct: 352 PRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTYDERHTCQKEWILKRCTSKWLAGK 410

Query: 261 YLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKK 320
           Y+  ++   K+S       ++  + +     KL  A   A   +  D  + Y  L    K
Sbjct: 411 YIEAFRADEKMSLTSFAKTVQLQWNLTPSRSKLARARRIAMKTMHGDEVEQYKLLWDYGK 470

Query: 321 EMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYK 380
           E+ R +      L+ DG         ++ ++  +     F   CR ++ +DG  +   Y 
Sbjct: 471 ELRRSNPGTSFFLKLDGS------LFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYG 524

Query: 381 SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGI 440
             +L A G+D N+ I P+AF  V+VE L +W +FL+ + N L +EN     I+ D   G+
Sbjct: 525 GQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGL 584

Query: 441 DYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQS 500
             AV++  PE+ +R C   +++    +F    +++  W+  RS+S   ++K MD+++  +
Sbjct: 585 IPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLN 644

Query: 501 KECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGI-ARL 559
           K  +EW+ +   ++W      ++ KC  +  +  +  +  + +  E+ I      I  +L
Sbjct: 645 KSAYEWIEKLPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKGQL 704

Query: 560 TADLFERRRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDL 619
               F +++  V + ++  + P +R+ +  +  D          G  +         Y +
Sbjct: 705 MTRHFNKQKELV-DQFQGLICPKIRKKVL-KNADAANTCYALPAGQGIFQVHEREYQYIV 762

Query: 620 DMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKE 679
           D+ AM C C  W ++GIPC HA   ++    N E  + N  +   +   Y   +     +
Sbjct: 763 DINAMHCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDK 822

Query: 680 HDWKSDAGNIILPPMIHS----PKAVSAKGSNEIV 710
             W++  G  I PP+       PK    K   E++
Sbjct: 823 SKWENVNGPEIKPPVYEKKAGRPKKFRRKAPYEVI 857

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53370698|gb|AAU89193.1| transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]

 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/574 (22%), Positives = 252/574 (43%), Gaps = 26/574 (4%)

Query: 148 DAETSEDVGDWVKFD-------DTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCV 200
           +A  S+D G  +KF        + P  K+    G  F  V + R+A+  ++VR   ++ +
Sbjct: 296 NAADSDDEGVRLKFKSFAEEDLNNPNFKV----GLVFPSVEKLRQAITEYSVRNRVEIKM 351

Query: 201 MENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAI 260
             N    +   C++  C W + A   S    F+V     +HTC +  +  +  SKW++  
Sbjct: 352 PRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKRCTSKWLAGK 410

Query: 261 YLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKK 320
           Y+  ++   K+S       ++  + +     KL  A   A   +  D  + Y  L    K
Sbjct: 411 YIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGK 470

Query: 321 EMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYK 380
           E+ R +  +   L+ DG         ++ ++  +     F   CR ++ +DG  +   Y 
Sbjct: 471 ELRRSNPGSSFFLKLDGS------LFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYG 524

Query: 381 SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGI 440
             +L A G+D N+ I P+AF  V+VE L +W +FL+ + N L +EN     I+ D   G+
Sbjct: 525 GQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGL 584

Query: 441 DYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQS 500
             AV++  PE+ +R C   +++    +F    +++  W+  RS+S   ++K MD+++  +
Sbjct: 585 IPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLN 644

Query: 501 KECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLT 560
           K  +EWL +   ++W      ++ KC  +  +  +  +  + +  E+ I    T + ++ 
Sbjct: 645 KSAYEWLEKLPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI---LTMLEKIK 701

Query: 561 ADLFER---RRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFY 617
             L  R   ++  + + ++  + P +R+ +  +  D          G  +         Y
Sbjct: 702 GQLMTRHFNKQKELADQFQGLICPKIRKKVL-KNADAANTCYALPAGQGIFQVHEREYQY 760

Query: 618 DLDMEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP 677
            +D+ AM C C  W ++GIPC HA   ++    N E  + N  +   +   Y   +    
Sbjct: 761 IVDINAMYCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCN 820

Query: 678 KEHDWKSDAGNIILPPMIHSPKAVSAKGSNEIVP 711
            +  W++  G  I PP ++  KA   K S    P
Sbjct: 821 DKSKWENVNGPEIKPP-VYEKKAGRPKKSRRKAP 853

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/517 (23%), Positives = 235/517 (45%), Gaps = 28/517 (5%)

Query: 174 GQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFI 233
           GQRF  V EFR+A++ +A+   F     +N SH V  +C    C W I A R+S      
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 234 VTDFMPQHTCIRPPLK--FQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEG 291
           +      HTC    +   +Q    W+++I + + K+ P     +I ++I+  YG+     
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 292 KLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFV 351
           +       AK  L   + + Y++L    +++   +  +     T  D +      +++FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSS-----FHRLFV 378

Query: 352 CWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESW 411
            +  + Y F+  CR +L +D   + + Y+  +L A   DG++G+ PVAF  VD E  ++W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 412 VYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAA 471
            +FL  + +A  L   + I  + D + G+  ++ E   + ++   C +  TE + +    
Sbjct: 439 HWFLLQLKSA--LPTSRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKG 495

Query: 472 PVQHL--------FWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSW--ALFSIP 521
              H         F++A  +    SF + ++ I+  S E + WL+Q+   +W  A F   
Sbjct: 496 QFSHEVKRLMVEDFYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWANAFFQSA 555

Query: 522 KWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTP 581
           ++    S   +  +  ++   +  E+ I +    I     +LF  RR     W   ++TP
Sbjct: 556 RYNHMAS---NFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTP 611

Query: 582 TVREVIHDRTIDGQRFAMVEQNGTTLKL-TDTISMFYDLDMEAMSCSCGLWQISGIPCAH 640
           ++ E +   T+  +   ++   G T ++  DTI +   +D++   CSC  WQ++G+PC H
Sbjct: 612 SMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQLTGLPCCH 668

Query: 641 ACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP 677
           A   I     +  EY     + ++Y  TY+  +  +P
Sbjct: 669 AIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/517 (23%), Positives = 235/517 (45%), Gaps = 28/517 (5%)

Query: 174 GQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFI 233
           GQRF  V EFR+A++ +A+   F     +N SH V  +C    C W I A R+S      
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 234 VTDFMPQHTCIRPPLK--FQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEG 291
           +      HTC    +   +Q    W+++I + + K+ P     +I ++I+  YG+     
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 292 KLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFV 351
           +       AK  L   + + Y++L    +++   +  +     T  D +      +++FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSS-----FHRLFV 378

Query: 352 CWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESW 411
            +  + Y F+  CR +L +D   + + Y+  +L A   DG++G+ PVAF  VD E  ++W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 412 VYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAA 471
            +FL  + +A  L   + I  + D + G+  ++ E   + ++   C +  TE + +    
Sbjct: 439 HWFLLQLKSA--LPTSRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKG 495

Query: 472 PVQHL--------FWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSW--ALFSIP 521
              H         F++A  +    SF + ++ I+  S E + WL+Q+   +W  A F   
Sbjct: 496 QFSHEVKRLMVEDFYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWANAFFQGA 555

Query: 522 KWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTP 581
           ++    S   +  +  ++   +  E+ I +    I     +LF  RR     W   ++TP
Sbjct: 556 RYNHMAS---NFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTP 611

Query: 582 TVREVIHDRTIDGQRFAMVEQNGTTLKL-TDTISMFYDLDMEAMSCSCGLWQISGIPCAH 640
           ++ E +   T+  +   ++   G T ++  DTI +   +D++   CSC  WQ++G+PC H
Sbjct: 612 SMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQLTGLPCCH 668

Query: 641 ACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP 677
           A   I     +  EY     + ++Y  TY+  +  +P
Sbjct: 669 AIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/556 (23%), Positives = 248/556 (44%), Gaps = 35/556 (6%)

Query: 175 QRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIV 234
           QRF    EFR+A+  +++  GF     +N SH V  +C    C W I A R+S      +
Sbjct: 202 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 261

Query: 235 TDFMPQHTCIRPPLK--FQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGK 292
                 HTC    +K  ++    W+  I   + K+ P     +I D+I+  YG+     +
Sbjct: 262 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 321

Query: 293 LLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVC 352
              A   A+  L   + + Y++L    ++++  +  +    ET  D +      +++F+ 
Sbjct: 322 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSS-----FHRLFIS 376

Query: 353 WERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWV 412
           +      F+  CR +L +D   +N+ Y+ ++L A   DG++G+ PVAF  VD E  ++W 
Sbjct: 377 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 436

Query: 413 YFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAP 472
           +FL  + +A  +   + I  + D   G+  ++ E   +  Y   C +  TE + +     
Sbjct: 437 WFLLELKSA--VSTARPITFVADFQKGLKKSLAEIF-DNGYHSYCLRYLTEKLNKDLKGQ 493

Query: 473 VQHL--------FWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSW--ALFSIPK 522
             H         F++A  ++   +F +  + I+  S E + W++Q+    W  A F   +
Sbjct: 494 FSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGAR 553

Query: 523 WVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPT 582
           +    S   +     +  + +  ++ I +    +     +L  +RR+    W   K+TP+
Sbjct: 554 YSHMAS---NFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPS 609

Query: 583 VREVIHDRTIDGQRFAMVEQNGTTLKL-TDTISMFYDLDMEAMSCSCGLWQISGIPCAHA 641
             E +   T   +   ++  +G+T ++  ++I +   +D++   CSC  WQ+SG+PC HA
Sbjct: 610 KEEKLLKDTSTARSLQVLLSHGSTFEVRGESIDI---VDIDHWDCSCKDWQLSGLPCCHA 666

Query: 642 CRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPK-EHDWKSDA---GNIILPPMIHS 697
               +    N  +Y     +V++Y  TYA  +  +P  +   K+++   G I+ PP    
Sbjct: 667 IAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVPNVDRPVKTESTQVGXIVTPPPTKR 726

Query: 698 PKA---VSAKGSNEIV 710
           P     +   GS E +
Sbjct: 727 PPGRPKMKQAGSXETI 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527977|ref|XP_003532582.1| PREDICTED: uncharacterized protein LOC100775909 [Glycine max]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/545 (24%), Positives = 242/545 (44%), Gaps = 31/545 (5%)

Query: 171 LYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGT 230
            + GQ+F DV  FR A++  A+ + F+L  +++       +C+   C W I+A ++ +  
Sbjct: 6   FFVGQKFHDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAP 65

Query: 231 TFIVTDFMPQHTCIRPPLKFQPQSK--WISAIYLHRWKLQPKVSTVEIRDEIEATYGVVC 288
           TF +      HTC R       Q+   WI +    R +        +I  +I   YG+  
Sbjct: 66  TFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITI 125

Query: 289 PEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNK 348
           P  +   A  R    +     +GY  L    +++++ +  ++  + T  D      R  +
Sbjct: 126 PYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFTGAD-----NRFQR 180

Query: 349 MFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDL 408
            FV +  +   F   C  I+ + G ++ + Y S +L A   D + G+ P+AF  VDVE+ 
Sbjct: 181 FFVSFYASINGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVEND 240

Query: 409 ESWVYFLKNINNALRL--ENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVK 466
           +SW +FL  ++  L +  E       L DG  GI  AV    P +++  C   +   + K
Sbjct: 241 DSWTWFLSELHKVLEVNTECMPKFIFLSDGQKGITDAVRRKFPSSSHALCMRHLTESIGK 300

Query: 467 RFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALFSIPKWVKC 526
            F  + + HL W A  +T+  +F + M  I++ S E  +WL Q + S WAL    K  + 
Sbjct: 301 EFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHF-KGTRF 359

Query: 527 TSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPTVREV 586
             ++ +I ++ +  +    E+ I +    I       F+ RR+   +W    + P+  ++
Sbjct: 360 GHLSSNI-EEFNKWILDTRELPIIQVIERIHSKLKTEFDDRRLKSSSWC-SVLAPSAEKL 417

Query: 587 I-----HDRTIDGQRFAMVEQNGTTLKLTDTISMFYDLDMEAMSCSCGLWQISGIPCAHA 641
           +     H  T    R   VE    +   +D +      ++ + SCSC  WQ++GIPC+HA
Sbjct: 418 MTEAIDHASTYQVLRSDEVEFEVLSADRSDIV------NIGSHSCSCRDWQLNGIPCSHA 471

Query: 642 CRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDW-----KSDAGNIIL---PP 693
             A+     +V  +     +  +Y +TYA  +  +P + +W     KS   + IL   PP
Sbjct: 472 TAALISCRKDVYAFTQKCFTAASYRNTYAEAIHHIPGKLEWSKTDDKSSMDDNILVVRPP 531

Query: 694 MIHSP 698
            +  P
Sbjct: 532 KLRRP 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/517 (22%), Positives = 238/517 (46%), Gaps = 30/517 (5%)

Query: 175 QRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIV 234
           QRF    EFR+A+  +++  GF     +N SH V  +C    C W + A R+S      +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASRLSTTQLICI 245

Query: 235 TDFMPQHTCIRPPLK--FQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGK 292
                 HTC    +K  ++    W+ +I   + K  P     +I D+I+  YG+     +
Sbjct: 246 KKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 293 LLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVC 352
              A   A+  L   + + Y +L    ++++  +  +     T  D +      +++FV 
Sbjct: 306 AWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFATFTTKEDSS-----FHRLFVA 360

Query: 353 WERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWV 412
           +  ++  F+  CR ++ +D   +N+ Y+  +L A  +DGN+GI PVAF  VD E  ++W 
Sbjct: 361 FHASTSGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIFPVAFAVVDTETEDNWR 420

Query: 413 YFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAP 472
           +FL+ +   L     + I  + D  NG+  ++ +   E  Y   C +   E + +     
Sbjct: 421 WFLQELK--LATSTSEKITFVADFQNGLKKSLSDVF-EKCYHSYCLRHLAEKLNKDLKGQ 477

Query: 473 VQHL--------FWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSW--ALFSIPK 522
             H         F++A  +    +F + ++ I+  S E ++W++Q+    W  A F+  +
Sbjct: 478 FSHEARRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQSEPEHWANAFFNGAR 537

Query: 523 WVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGI-ARLTADLFERRRMAVWNWYREKVTP 581
           +   +S   +   + ++ + +  E+ I +    +  ++   ++ RR  +  N +  K+TP
Sbjct: 538 YNLLSS---NFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVES--NQWMTKLTP 592

Query: 582 TVREVIHDRTIDGQRFAMVEQNGTTLKL-TDTISMFYDLDMEAMSCSCGLWQISGIPCAH 640
           +  E++   T+      ++   G+T ++  +++ +   +D++   CSC  WQ++G+PC H
Sbjct: 593 SKEELLQKETLVAPSLQVLFSQGSTFEVRGESVDI---VDIDNWDCSCKGWQLTGVPCCH 649

Query: 641 ACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP 677
           A    +    +  +Y     +V+NY  TYA  +  +P
Sbjct: 650 AIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/541 (23%), Positives = 243/541 (44%), Gaps = 32/541 (5%)

Query: 175 QRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIV 234
           QRF    EFR+A+  +++  GF     +N SH V  +C    C W I A R+S      +
Sbjct: 184 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 243

Query: 235 TDFMPQHTCIRPPLK--FQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGK 292
                 HTC    +K  ++    W+  I   + K+ P     +I D+I+  YG+     +
Sbjct: 244 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 303

Query: 293 LLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVC 352
              A   A+  L   + + Y++L    ++++  +  +    ET  D +      +++F+ 
Sbjct: 304 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSS-----FHRLFIS 358

Query: 353 WERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWV 412
           +      F+  CR +L +D   +N+ Y+ ++L A   DG++G+ PVAF  VD E  ++W 
Sbjct: 359 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 418

Query: 413 YFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAP 472
           +FL  + +A  +   + I  + D   G+  ++ E   +  Y   C +  TE + +     
Sbjct: 419 WFLLELKSA--VSTARPITFVADFQKGLKKSLAEIF-DNGYHSYCLRYLTEKLNKDLKGQ 475

Query: 473 VQHL--------FWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSW--ALFSIPK 522
             H         F++A  ++   +F +  + I+  S E + W++Q+    W  A F   +
Sbjct: 476 FSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGAR 535

Query: 523 WVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAVWNWYREKVTPT 582
           +    S   +     +  + +  ++ I +    +     +L  +RR+    W   K+TP+
Sbjct: 536 YSHMAS---NFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPS 591

Query: 583 VREVIHDRTIDGQRFAMVEQNGTTLKL-TDTISMFYDLDMEAMSCSCGLWQISGIPCAHA 641
             E +   T   +   ++  +G+T ++  ++I +   +D++   CSC  WQ+SG+PC HA
Sbjct: 592 KEEKLLKDTSTARSLQVLLSHGSTFEVRGESIDI---VDIDHWDCSCKDWQLSGLPCCHA 648

Query: 642 CRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPK-EHDWKSDA---GNIILPPMIHS 697
               +    N  +Y     +V++Y  TYA  +  +P  +   K+++   G I+ PP    
Sbjct: 649 IAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVPNVDRPVKTESTQVGIIVTPPPTKR 708

Query: 698 P 698
           P
Sbjct: 709 P 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	737
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.700	0.717	0.220	2.3e-26
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.455	0.428	0.256	9.9e-19
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.758	0.745	0.208	1.2e-18

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 122/554 (22%), Positives = 232/554 (41%)

Query:   158 WVKFDDTPRHKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRC 217
             W+  DD   H M L  G  F+D  E +KAV  + +R      V E    +  +EC   +C
Sbjct:   178 WID-DD---HDMHL--GLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKC 231

Query:   218 DWVIQAGRVSDGTTFIVTDFMPQHTCIRP-PLKFQPQSKWISAIYLHRW-KLQPKVSTVE 275
              W ++A R+ +     +T +   HTC    P  F+ +    +A  + R  ++QP +S  E
Sbjct:   232 KWSLRAARMEEHGLVEITKYTGPHTCSHEYPNDFESE---FAADEIERVVRIQPTLSIAE 288

Query:   276 IRDEIEATYGVVCPEGKLLSAANRA-KHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLE 334
             ++   +   G      K+        K + G    D       + K +    S N +L++
Sbjct:   289 LKKWWKEKTGYELQTSKMRDGKLEVIKRVFG----DEDQSFRVMPKLISAFHSSNGLLVD 344

Query:   335 TDGD--ENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGN 392
                D   N +      +F  + ++   F+ HCR ++ VD   +N  Y+  +++A+G+D  
Sbjct:   345 WQYDLFPNPDFASFRGVFWSFSQSIEGFQ-HCRPLIVVDTKSLNGKYQLKLMIASGVDAA 403

Query:   393 NGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEE--FL-- 448
             N   P+AF        +SW +F   I    ++   K +C++      I   V E   L  
Sbjct:   404 NKFFPLAFAVTKEVSTDSWRWFFTKIRE--KVTQRKDLCLISSPLRDIVAVVNEPGSLWQ 461

Query:   449 -PEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWL 507
              P A ++ C + + ++ +  F    ++ L   A  +  +  F  YM+ I++++ E  +WL
Sbjct:   462 EPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWL 521

Query:   508 LQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTAD----L 563
              Q     WAL +    ++   + +   + L    R +   ++A   TG   L  D     
Sbjct:   522 DQIPRHKWAL-AHDSGLRYGIIEID-REALFAVCRGFPYCTVA--MTGGVMLMFDELRSS 577

Query:   564 FERRRMAVWNWYREKV--TPTVREVIHDRTIDGQRFAMVEQNGTTLKLTDTISMF-YDLD 620
             F++   ++++     V  T    + + +   D   + + +    + K++++     + + 
Sbjct:   578 FDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQ 637

Query:   621 MEAMSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEH 680
             +   +C+C  +Q    PC HA    +    N  +YVD   +V+ YC TYA   + +P   
Sbjct:   638 LNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVA 697

Query:   681 DWKSDAG-NIILPP 693
              W  D     + PP
Sbjct:   698 AWPEDCRVPTLFPP 711

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 9.9e-19, P = 9.9e-19
 Identities = 93/362 (25%), Positives = 155/362 (42%)

Query:   174 GQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFI 233
             G  F+D+ E +KAV   +++   K  + E    V   EC    C W I A R  +   F 
Sbjct:   183 GLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLFE 242

Query:   234 VTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYG-----VV- 287
             +T+    H C    L     ++ I        ++QP +ST E+    E  +G     VV 
Sbjct:   243 ITECSGPHDCYPEHLN-DFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVVE 301

Query:   288 -CPEGKLLSAANRA-KHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDE---NGE 342
              C EG +  A  +A K   G   +D   +L  + K M  + S N +L++   D    + E
Sbjct:   302 HCSEGLVEDAKVKAIKRFFG--DWDQSFRL--IPKLMSVLHSSNGLLVDWQYDSLTHDPE 357

Query:   343 GKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCE 402
                   +F  + ++   F+ HCR ++ VD   +   YK  +++A+  D  N   P+AF  
Sbjct:   358 HASFRGLFWAFSQSIQGFQ-HCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAV 416

Query:   403 VDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEE-----FLPEAAYRQCC 457
                  ++SW +FL  I    ++   +GIC++   D  I   + E       P A +R C 
Sbjct:   417 TKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCL 474

Query:   458 HKVFTEMVKRFPAAPVQ-HLFWSACRSTSEAS-FHKYMDLIQQQSKECHEWLLQTNWSSW 515
             + + +++    P      H       S+S+   F  YM  I++++ E  +WL Q     W
Sbjct:   475 YHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQW 534

Query:   516 AL 517
             AL
Sbjct:   535 AL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 124/594 (20%), Positives = 238/594 (40%)

Query:   119 EQLQDKNNDEDQLEGYSSEIDKGSLYKLR-DAETSEDVGDWVKFDDTPRHKMVLYQGQRF 177
             E+  D+N++ D   G    +D  +L K       S+     +  DD   H + +  G  F
Sbjct:   147 ERETDRNSESD---GVVHLVDSSTLNKDSISGHVSKPCMSSLWLDD---HDLRV--GLCF 198

Query:   178 RDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDF 237
             +D  E +KAV   +++   K  V E       +EC   +C W + A R+       +  +
Sbjct:   199 KDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVEIIKY 258

Query:   238 MPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYGVVCPEGKLLSAA 297
                HTC  P +    +S++ +       +  P  +  E++   +   G       +  A 
Sbjct:   259 TGPHTC-HPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAK 317

Query:   298 NRA-KHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGD--ENGEGKRLNKMFVCWE 354
              +A K + G    D         K M  + S N +L++   D   N        +F  + 
Sbjct:   318 EKAIKRVFG----DWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFP 373

Query:   355 RTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYF 414
             ++   F+ HCR ++ VD   +N  Y+  +++A+G+D  N   P+AF        + W +F
Sbjct:   374 QSIEGFQ-HCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWF 432

Query:   415 LKNINNALRLENGKGICILGDGDNGIDYAVEEF-----LPEAAYRQCCHKVFTEMVKRFP 469
             L  I    ++   KG+C++      I   V E       P A +R   +  +++  + FP
Sbjct:   433 LTGIRE--KVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFP 490

Query:   470 AAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWLLQTNWSSWALF--SIPKW--VK 525
             +  +      A  ++ +  F  YM+ I++++ E  +WL Q   + WAL   +  ++  ++
Sbjct:   491 SFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIME 550

Query:   526 CTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERRRMAV--WNWYREKVTPTV 583
               +  L        +    +  S+   F  +       F   R ++   + Y E V   +
Sbjct:   551 INTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVMDKL 610

Query:   584 REVIHDRTIDGQRFAMVEQNGTTLKLTDTISMFYDL-DMEAMSCSCGLWQISGIPCAHAC 642
              E     T     + +   +    ++   +     +  +   SC+CG +Q    PC HA 
Sbjct:   611 EEF--RTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHAL 668

Query:   643 RAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLPKEHDWKSDAG-NIILPPMI 695
                +    N  +YVD+  +++    TYA   + +P+   W   +G   +LPP+I
Sbjct:   669 AVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEASGVPRLLPPVI 722


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      737       723   0.00085  121 3  11 22  0.39    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  637 (68 KB)
  Total size of DFA:  458 KB (2215 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  61.12u 0.12s 61.24t   Elapsed:  00:00:03
  Total cpu time:  61.12u 0.12s 61.24t   Elapsed:  00:00:03
  Start:  Fri May 10 04:38:32 2013   End:  Fri May 10 04:38:35 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsJ_11904 transposon protein, putative, unclassified (987 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	737
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-10
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	1e-08
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	1e-05
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	6e-04

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 380 KSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNG 439
            +    A G+D +    P+AF  V  E  ESW +FL+ +  AL       + I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGR--PPLTIISDGDKG 62

Query: 440 IDYAVEEFLPEAAYRQC 456
           +  A++E  P A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 171 LYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGT 230
           L  GQ F+   EF+KAV+ +A++  F+  V ++       +C D  C W ++A ++ D  
Sbjct: 4   LEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSD 63

Query: 231 TFIV 234
           TF +
Sbjct: 64  TFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 625 SCSCGLWQISGIPCAHACRAIQLN 648
           +CSC  +Q+SGIPC HA  A    
Sbjct: 2   TCSCRKFQLSGIPCRHALAAAIHI 25

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 625 SCSCGLWQISGIPCAHACRAIQ 646
           SCSC  +Q+ GIPC HA   + 
Sbjct: 14  SCSCPAFQLYGIPCKHALAVLL 35

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	737
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.84
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.8
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.62
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.44
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.86
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.77
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.43
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.91
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.55
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.43
PF13610	140	DDE_Tnp_IS240: DDE domain	94.14
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	92.19
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	90.61
COG3316	215	Transposase and inactivated derivatives [DNA repli	85.38
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	85.21
PHA02517	277	putative transposase OrfB; Reviewed	83.75
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	82.27
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	81.55
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	81.52

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=8.4e-71  Score=636.78  Aligned_cols=467  Identities=14%  Similarity=0.210  Sum_probs=378.3

Q ss_pred             CCccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeecCe-------EEEEEEee-------------------------
Q 045767          167 HKMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSH-------VVCYECSD-------------------------  214 (737)
Q Consensus       167 ~~~~~~vG~~F~s~~e~~~av~~yAi~~gf~~~~~kS~~~-------r~~~~C~~-------------------------  214 (737)
                      .+..+.+||+|+|.+|++.||+.||.+.||.+++.++.++       ..+++|++                         
T Consensus        70 ~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~  149 (846)
T PLN03097         70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPEN  149 (846)
T ss_pred             CCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccc
Confidence            4567899999999999999999999999999998765432       23566753                         


Q ss_pred             ---------CCCceEEEEEEcCCCceEEEeeeCCCcccCCCCCCCCccchhhhhhhhheeccCCCCCHHHHHHHHHHHhC
Q 045767          215 ---------LRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRPPLKFQPQSKWISAIYLHRWKLQPKVSTVEIRDEIEATYG  285 (737)
Q Consensus       215 ---------~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~~~~h~~ss~~ia~~~~~~l~~~~~~~~~~I~~~l~~~~g  285 (737)
                               +||+++|++++. ..+.|.|+.+..+|||++...... +                 ...+.+...+....+
T Consensus       150 ~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~-~-----------------~~~r~~~~~~~~~~~  210 (846)
T PLN03097        150 GTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAV-S-----------------EQTRKMYAAMARQFA  210 (846)
T ss_pred             ccccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCcccc-c-----------------hhhhhhHHHHHhhhh
Confidence                     479999999875 457899999999999999754210 0                 011111111111111


Q ss_pred             ----CCCChh----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCccEEEEEecCCCCCCCCceeEEEEeehhhH
Q 045767          286 ----VVCPEG----KLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLNKMFVCWERTS  357 (737)
Q Consensus       286 ----~~~s~~----~~~rar~~~~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~~lF~~~~~~~  357 (737)
                          +.....    ..-..|.+  +...|    ..+.|..||+.++.+||+|+|.|++|     ++++++++||+++.++
T Consensus       211 ~~~~v~~~~~d~~~~~~~~r~~--~~~~g----D~~~ll~yf~~~q~~nP~Ffy~~qlD-----e~~~l~niFWaD~~sr  279 (846)
T PLN03097        211 EYKNVVGLKNDSKSSFDKGRNL--GLEAG----DTKILLDFFTQMQNMNSNFFYAVDLG-----EDQRLKNLFWVDAKSR  279 (846)
T ss_pred             ccccccccchhhcchhhHHHhh--hcccc----hHHHHHHHHHHHHhhCCCceEEEEEc-----cCCCeeeEEeccHHHH
Confidence                100000    11111221  11223    34789999999999999999999995     8999999999999999


Q ss_pred             HHHHhcCccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCc
Q 045767          358 YAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGD  437 (737)
Q Consensus       358 ~~f~~~~~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~  437 (737)
                      .+|.+ |++||.+|+||++|+|++||++++|+|+|+|+++|||||+.+|+.++|.|||++|+++|  ++..|.+||||++
T Consensus       280 ~~Y~~-FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd  356 (846)
T PLN03097        280 HDYGN-FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQD  356 (846)
T ss_pred             HHHHh-cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCC
Confidence            99998 99999999999999999999999999999999999999999999999999999999999  6899999999999


Q ss_pred             chHHHHHHhhccccceecchhHHHHHHHHhCCC-----chhHHHHHHHHhc-CCHHHHHHHHHHHHh-cChhHHHHHhcC
Q 045767          438 NGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPA-----APVQHLFWSACRS-TSEASFHKYMDLIQQ-QSKECHEWLLQT  510 (737)
Q Consensus       438 ~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-----~~~~~~~~~~~~~-~t~~eFe~~~~~l~~-~~~~~~~yL~~~  510 (737)
                      .+|.+||++|||++.|++|+|||++|+.+++..     ..+...|+.+++. .++++|+..|..|.+ ++.+.++||..+
T Consensus       357 ~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~L  436 (846)
T PLN03097        357 KAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSL  436 (846)
T ss_pred             HHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            999999999999999999999999999999863     4899999998875 699999999998875 578899999997


Q ss_pred             --CCccccccccCCccccccccCCcchHHhHHhhhh--hcccHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 045767          511 --NWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQY--LEMSIARRFTGIARLTADLFERRRMAV---------------  571 (737)
Q Consensus       511 --~~~~Wa~a~~~~~~~~g~~TtN~~ES~N~~lk~~--r~~pi~~lle~i~~k~~~~~~~r~~~a---------------  571 (737)
                        .+++|+++|+++.+..|+.||+++||+|+.|++.  +..+|..|++.+...+..+..+..+.-               
T Consensus       437 Y~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~p  516 (846)
T PLN03097        437 YEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSP  516 (846)
T ss_pred             HHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccH
Confidence              8999999999997888999999999999999984  668899999887766655443322210               


Q ss_pred             --hhhcCcccChHHHHHHHHHHhcccceEEEEeCC----cEEEEEe-CCeeEEEe--e--cCCcccccCCcccCCCCcch
Q 045767          572 --WNWYREKVTPTVREVIHDRTIDGQRFAMVEQNG----TTLKLTD-TISMFYDL--D--MEAMSCSCGLWQISGIPCAH  640 (737)
Q Consensus       572 --~~~~~~~~tp~~~k~l~~~~~~s~~~~V~~~~~----~~f~V~~-~~~~~y~V--~--l~~~tCsC~~~~~~GiPC~H  640 (737)
                        .+.+. .|||.||++||+++..+..|.+.....    .+|.|.+ +....|.|  |  ..+.+|+|++|+..||||+|
T Consensus       517 iEkQAs~-iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrH  595 (846)
T PLN03097        517 LEKSVSG-VYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRH  595 (846)
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhh
Confidence              12234 999999999999999998888765432    3788877 32222334  3  35789999999999999999


Q ss_pred             HHHHHHHhcC--CchhhhhhcccHHHHHh
Q 045767          641 ACRAIQLNMG--NVEEYVDNMMSVQNYCS  667 (737)
Q Consensus       641 alavl~~~~~--~~~~yv~~~yt~~~~~~  667 (737)
                      ||+||...++  .|..||.+|||+++-..
T Consensus       596 aLkVL~~~~v~~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        596 ALVVLQMCQLSAIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             HHHHHhhcCcccCchhhhhhhchhhhhhc
Confidence            9999999997  49999999999998643

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.84  E-value=3e-21  Score=169.07  Aligned_cols=90  Identities=31%  Similarity=0.523  Sum_probs=85.9

Q ss_pred             CeeecCCcCceeEE---EEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHHHhhc
Q 045767          372 GWKMNNPYKSVMLV---AAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFL  448 (737)
Q Consensus       372 ~T~~~~~y~~~ll~---~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vf  448 (737)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++.+|+.++|.|||+.|++.+.  .. |.+||||+++|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 98886   99999999999999999999999999999999999994  45 99999999999999999999


Q ss_pred             cccceecchhHHHHHHH
Q 045767          449 PEAAYRQCCHKVFTEMV  465 (737)
Q Consensus       449 P~a~h~~C~~Hi~~N~~  465 (737)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.80  E-value=1.9e-20  Score=205.22  Aligned_cols=237  Identities=16%  Similarity=0.239  Sum_probs=188.0

Q ss_pred             CCCCCHHHHHHHHHHHhC-CCCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCccEEEEEecCCCCCCCCce
Q 045767          268 QPKVSTVEIRDEIEATYG-VVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRL  346 (737)
Q Consensus       268 ~~~~~~~~I~~~l~~~~g-~~~s~~~~~rar~~~~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f  346 (737)
                      -.+++.++|.+.++.-+| ..+|.+++.+....+.+.+           ..|.    ..-        +           
T Consensus       112 ~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w~----~R~--------L-----------  157 (381)
T PF00872_consen  112 LKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAWR----NRP--------L-----------  157 (381)
T ss_pred             ccccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHHh----hhc--------c-----------
Confidence            358899999999999999 7899999887665543222           1111    110        0           


Q ss_pred             eEEEEeehhhHHHHHhcC-ccEEEecCeeecCCcC-----ceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHH
Q 045767          347 NKMFVCWERTSYAFKYHC-RGILAVDGWKMNNPYK-----SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINN  420 (737)
Q Consensus       347 ~~lF~~~~~~~~~f~~~~-~~vi~iD~T~~~~~y~-----~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~  420 (737)
                                    . .. -++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+...|+.++|.-||+.|++
T Consensus       158 --------------~-~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~  222 (381)
T PF00872_consen  158 --------------E-SEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKE  222 (381)
T ss_pred             --------------c-cccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhh
Confidence                          0 13 4789999999987754     4689999999999999999999999999999999999999


Q ss_pred             HcccCCCCCEEEEccCcchHHHHHHhhccccceecchhHHHHHHHHhCCCc---hhHHHHHHHHhcCCHHHHHHHHHHHH
Q 045767          421 ALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAA---PVQHLFWSACRSTSEASFHKYMDLIQ  497 (737)
Q Consensus       421 ~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~~~t~~eFe~~~~~l~  497 (737)
                      .+   ...|..||+|+.+||..||.++||++.++.|++|+++|+.++++..   .+...++.+..+.+.+++...++.+.
T Consensus       223 RG---l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~  299 (381)
T PF00872_consen  223 RG---LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFA  299 (381)
T ss_pred             cc---ccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcc
Confidence            97   5679999999999999999999999999999999999999999654   67778888888888888888887775


Q ss_pred             h----cChhHHHHHhcCCCccccccccCCccccccccCCcchHHhHHhhhh----hcccHHHHHHHH
Q 045767          498 Q----QSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQY----LEMSIARRFTGI  556 (737)
Q Consensus       498 ~----~~~~~~~yL~~~~~~~Wa~a~~~~~~~~g~~TtN~~ES~N~~lk~~----r~~pi~~lle~i  556 (737)
                      +    .+|.+.++|.+...+.|+..-|+...+--+.|||.+|++|+.|+..    ...|-.+.+..+
T Consensus       300 ~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~  366 (381)
T PF00872_consen  300 EKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRL  366 (381)
T ss_pred             cccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHH
Confidence            5    4788989988876666665545552444678999999999999873    235544444433

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.62  E-value=1.5e-15  Score=124.10  Aligned_cols=67  Identities=28%  Similarity=0.553  Sum_probs=64.8

Q ss_pred             CccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeecCeEEEEEEeeCCCceEEEEEEcCCCceEEE
Q 045767          168 KMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVSDGTTFIV  234 (737)
Q Consensus       168 ~~~~~vG~~F~s~~e~~~av~~yAi~~gf~~~~~kS~~~r~~~~C~~~gCpwri~a~~~~~~~~~~I  234 (737)
                      |+.|.+||+|+|++||+.||..||++++|++++.+|+++|++++|...+|||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.44  E-value=3.1e-12  Score=137.90  Aligned_cols=222  Identities=15%  Similarity=0.167  Sum_probs=165.9

Q ss_pred             CCCCCHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCccEEEEEecCCCCCCCCcee
Q 045767          268 QPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLN  347 (737)
Q Consensus       268 ~~~~~~~~I~~~l~~~~g~~~s~~~~~rar~~~~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~  347 (737)
                      ..+++++++.+.+++.++..+|...+.+.-...+               ..+.+++..-+                    
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~---------------e~v~~~~~r~l--------------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLD---------------EKVKAWQNRPL--------------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHH---------------HHHHHHHhccc--------------------
Confidence            4588999999999999988787776665443332               22333322210                    


Q ss_pred             EEEEeehhhHHHHHhcCccEEEecCeeecCC--cCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccC
Q 045767          348 KMFVCWERTSYAFKYHCRGILAVDGWKMNNP--YKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLE  425 (737)
Q Consensus       348 ~lF~~~~~~~~~f~~~~~~vi~iD~T~~~~~--y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~  425 (737)
                                     +..+++++||+|++.+  -+..+++|+|++.+|+-..+++.+-..|+ ..|.-||..|+..+   
T Consensus       143 ---------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg---  203 (379)
T COG3328         143 ---------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG---  203 (379)
T ss_pred             ---------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---
Confidence                           1558899999999988  44589999999999999999999999999 99999999999987   


Q ss_pred             CCCCEEEEccCcchHHHHHHhhccccceecchhHHHHHHHHhCCCc---hhHHHHHHHHhcCCHHHHHHHHHHHH----h
Q 045767          426 NGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAA---PVQHLFWSACRSTSEASFHKYMDLIQ----Q  498 (737)
Q Consensus       426 ~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~~~t~~eFe~~~~~l~----~  498 (737)
                      ......+++|+.+|+.+||.++||.+.++.|..|+.+|+..+...+   .....+..+..+.+.++-...|..+.    .
T Consensus       204 l~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~  283 (379)
T COG3328         204 LSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK  283 (379)
T ss_pred             ccceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence            4566777789999999999999999999999999999999988765   34444445555566665555555533    3


Q ss_pred             cChhHHHHHhcCCCccccccccCCccccccccCCcchHHhHHhhh
Q 045767          499 QSKECHEWLLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQ  543 (737)
Q Consensus       499 ~~~~~~~yL~~~~~~~Wa~a~~~~~~~~g~~TtN~~ES~N~~lk~  543 (737)
                      .+|....++.+..-+.|.-.-|+...+--+.|||.+|++|+.++.
T Consensus       284 ~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         284 RYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             hcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            577777777775444443322222122347899999999997775

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.86  E-value=1.2e-09  Score=72.38  Aligned_cols=27  Identities=44%  Similarity=0.691  Sum_probs=25.1

Q ss_pred             cccccCCcccCCCCcchHHHHHHHhcC
Q 045767          624 MSCSCGLWQISGIPCAHACRAIQLNMG  650 (737)
Q Consensus       624 ~tCsC~~~~~~GiPC~Halavl~~~~~  650 (737)
                      .+|||++||..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.77  E-value=3.3e-08  Score=86.15  Aligned_cols=69  Identities=14%  Similarity=0.305  Sum_probs=65.5

Q ss_pred             eCCHHHHHHHHHHHHHHcCceEEEEeecCeEEEEEEe------------------------------------------e
Q 045767          177 FRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECS------------------------------------------D  214 (737)
Q Consensus       177 F~s~~e~~~av~~yAi~~gf~~~~~kS~~~r~~~~C~------------------------------------------~  214 (737)
                      |.+++|++.+|+.++...|+++.+.+|+.+.+.++|.                                          .
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            8899999999999999999999999999999999996                                          1


Q ss_pred             CCCceEEEEEEcCCCceEEEeeeCCCcccCC
Q 045767          215 LRCDWVIQAGRVSDGTTFIVTDFMPQHTCIR  245 (737)
Q Consensus       215 ~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~  245 (737)
                      ..|||+|+|......+.|.|+.++..|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            5999999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.43  E-value=4.3e-07  Score=78.92  Aligned_cols=61  Identities=25%  Similarity=0.348  Sum_probs=54.1

Q ss_pred             HHHHHHHHHcCceEEEEeecCe-------EEEEEEee----------------------CCCceEEEEEEcCCCceEEEe
Q 045767          185 KAVQVFAVREGFKLCVMENRSH-------VVCYECSD----------------------LRCDWVIQAGRVSDGTTFIVT  235 (737)
Q Consensus       185 ~av~~yAi~~gf~~~~~kS~~~-------r~~~~C~~----------------------~gCpwri~a~~~~~~~~~~I~  235 (737)
                      +||+.||..+||.+++.+|.+.       ++.++|.+                      +||||+|.+.+.. ++.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            4799999999999999877653       78899972                      7999999999887 8999999


Q ss_pred             eeCCCcccCCC
Q 045767          236 DFMPQHTCIRP  246 (737)
Q Consensus       236 ~~~~~HnC~~~  246 (737)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999875

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.91  E-value=6.2e-06  Score=59.80  Aligned_cols=30  Identities=33%  Similarity=0.699  Sum_probs=26.7

Q ss_pred             eecCCcccccCCcccCCCCcchHHHHHHHh
Q 045767          619 LDMEAMSCSCGLWQISGIPCAHACRAIQLN  648 (737)
Q Consensus       619 V~l~~~tCsC~~~~~~GiPC~Halavl~~~  648 (737)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            456688999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.55  E-value=0.19  Score=57.12  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=95.0

Q ss_pred             ccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHHHhhccccceecchhHHHHHHHHhCC-CchhHHHHHHHHhc
Q 045767          405 VEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFP-AAPVQHLFWSACRS  483 (737)
Q Consensus       405 ~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~-~~~~~~~~~~~~~~  483 (737)
                      ..+.+.|.-+...+.+...+....-+++.+|+...|.+++. .+|.+.|.+..+|+.+.+.+.++ .+.+...++++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            55678999999999998864444467889999999988776 99999999999999999999886 34677777888888


Q ss_pred             CCHHHHHHHHHHHHhc--Ch-------hHHHHHhcCCCcccc--ccccCCccccccccCCcchHHhHHhhh
Q 045767          484 TSEASFHKYMDLIQQQ--SK-------ECHEWLLQTNWSSWA--LFSIPKWVKCTSVTLSITDKLHTRLRQ  543 (737)
Q Consensus       484 ~t~~eFe~~~~~l~~~--~~-------~~~~yL~~~~~~~Wa--~a~~~~~~~~g~~TtN~~ES~N~~lk~  543 (737)
                      .....++..++.+...  .+       ++..||.+    .|.  ..|-.   +-|.......|+.+..+..
T Consensus       314 ~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~----n~~~i~~y~~---~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  314 GDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLN----NWDGIKPYRE---REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             cCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH----CHHHhhhhhh---ccCCCccchhhhhhhHHHH
Confidence            8888888888877653  22       34556655    342  12211   1234455567787776643

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.43  E-value=0.068  Score=55.39  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             EEecCeeecCCcCceeEEEEeecC--CCceEEEEEEEeeccchhhHHHHHHHH-HHHcccCCCCCEEEEccCcchHHHHH
Q 045767          368 LAVDGWKMNNPYKSVMLVAAGLDG--NNGILPVAFCEVDVEDLESWVYFLKNI-NNALRLENGKGICILGDGDNGIDYAV  444 (737)
Q Consensus       368 i~iD~T~~~~~y~~~ll~~~g~d~--~~~~~plafal~~~E~~es~~wfl~~l-~~~~~~~~~~p~~iitD~~~~l~~Ai  444 (737)
                      |+||-+.....+..  +..+-+|.  +++..   +.++++-+.++..-||..+ -...   .....+|++|...+...||
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~---~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEE---RKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCcccc---ccceEEEEcCCCccccccc
Confidence            46777776554443  44444554  33332   4578888888888888766 3332   4568899999999999999


Q ss_pred             HhhccccceecchhHHHHHHHHhC
Q 045767          445 EEFLPEAAYRQCCHKVFTEMVKRF  468 (737)
Q Consensus       445 ~~vfP~a~h~~C~~Hi~~N~~~~~  468 (737)
                      ++.||+|.+..-.||+++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999887654

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=94.14  E-value=0.024  Score=53.42  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             ccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHH
Q 045767          365 RGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAV  444 (737)
Q Consensus       365 ~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai  444 (737)
                      ++.+.+|-||.+.+-. ..+...++|.+++  +|++-|...-+...=..||..+++..   ...|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence            3578999999886522 4566888999999  88999999999999899998888877   3789999999999999999


Q ss_pred             Hhhcccc
Q 045767          445 EEFLPEA  451 (737)
Q Consensus       445 ~~vfP~a  451 (737)
                      ++++|.-
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9999874

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=92.19  E-value=0.29  Score=38.78  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CeEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccC
Q 045767          205 SHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCI  244 (737)
Q Consensus       205 ~~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~  244 (737)
                      -.|..++|+..+||++-.+.+..++....++++..+|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            4577799999999999999998878889999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=90.61  E-value=0.51  Score=51.64  Aligned_cols=56  Identities=9%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             cCCcEeCCHHHHHHHHHHHHHHcCceEEEEeec-CeEEEEEEeeCCCceEEEEEEcC
Q 045767          172 YQGQRFRDVGEFRKAVQVFAVREGFKLCVMENR-SHVVCYECSDLRCDWVIQAGRVS  227 (737)
Q Consensus       172 ~vG~~F~s~~e~~~av~~yAi~~gf~~~~~kS~-~~r~~~~C~~~gCpwri~a~~~~  227 (737)
                      ..+..|++.++-+.+|+.|-+..+.+|..+.|- .+.|+|.|.-..|||+|..+..+
T Consensus        23 ~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   23 AQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             ccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            457789999999999999999999999999886 47899999999999999998654

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=85.38  E-value=9.2  Score=38.37  Aligned_cols=84  Identities=15%  Similarity=0.074  Sum_probs=61.2

Q ss_pred             ccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHH
Q 045767          365 RGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAV  444 (737)
Q Consensus       365 ~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai  444 (737)
                      .+++.+|-||.+.+-+. .+.--++|.+  ..+|.+-|...-+...=.-||..+++..    ..|.+|+||+.+....|+
T Consensus        70 ~~~w~vDEt~ikv~gkw-~ylyrAid~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A~  142 (215)
T COG3316          70 GDSWRVDETYIKVNGKW-HYLYRAIDAD--GLTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAAL  142 (215)
T ss_pred             ccceeeeeeEEeeccEe-eehhhhhccC--CCeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHHH
Confidence            45677888888754332 2233445555  3567778888777777777887777765    579999999999999999


Q ss_pred             Hhhccccceec
Q 045767          445 EEFLPEAAYRQ  455 (737)
Q Consensus       445 ~~vfP~a~h~~  455 (737)
                      .++-+.+.|+.
T Consensus       143 ~~l~~~~ehr~  153 (215)
T COG3316         143 RKLGSEVEHRT  153 (215)
T ss_pred             HhcCcchheec
Confidence            99988666653

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=85.21  E-value=1.6  Score=45.89  Aligned_cols=134  Identities=13%  Similarity=0.165  Sum_probs=84.5

Q ss_pred             CCCCCHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCccEEEEEecCCCCCCCCcee
Q 045767          268 QPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENGEGKRLN  347 (737)
Q Consensus       268 ~~~~~~~~I~~~l~~~~g~~~s~~~~~rar~~~~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~~~~~~~~~~~~f~  347 (737)
                      ...++...|.+.+... |+.+|.+++.+.-.++.+..           ....+.|.+.                      
T Consensus        18 ~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~----------------------   63 (271)
T PF03050_consen   18 VYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEE----------------------   63 (271)
T ss_pred             cCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhh----------------------
Confidence            4466777777777777 99999998877655443321           1112222111                      


Q ss_pred             EEEEeehhhHHHHHhcCccEEEecCeeec----CCcC-ceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHc
Q 045767          348 KMFVCWERTSYAFKYHCRGILAVDGWKMN----NPYK-SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNAL  422 (737)
Q Consensus       348 ~lF~~~~~~~~~f~~~~~~vi~iD~T~~~----~~y~-~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~  422 (737)
                                  ..  -.+|+.+|-|...    ++.. +-+.++++-+      .+.|.+.++-+.+...-+|..     
T Consensus        64 ------------~~--~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-----  118 (271)
T PF03050_consen   64 ------------LR--SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-----  118 (271)
T ss_pred             ------------cc--ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-----
Confidence                        11  3578888888887    4433 3344444333      556666666666665555422     


Q ss_pred             ccCCCCCEEEEccCcchHHHHHHhhccccceecchhHHHHHHHHhCCC
Q 045767          423 RLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPA  470 (737)
Q Consensus       423 ~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~  470 (737)
                           -.-+++||+..+=..     +..+.|+.|+.|+.+.+.+-...
T Consensus       119 -----~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  119 -----FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             -----cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence                 234899999987544     23889999999999998876653

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PHA02517 putative transposase OrfB; Reviewed

Probab=83.75  E-value=7.9  Score=40.65  Aligned_cols=151  Identities=11%  Similarity=0.019  Sum_probs=80.4

Q ss_pred             hhhhhhhheecc-CCCCCHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCccEEEEE
Q 045767          256 WISAIYLHRWKL-QPKVSTVEIRDEIEATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLE  334 (737)
Q Consensus       256 ~ia~~~~~~l~~-~~~~~~~~I~~~l~~~~g~~~s~~~~~rar~~~~~~~~g~~~~~y~~L~~~~~~l~~~NPg~~~~v~  334 (737)
                      .+.+.+.+.+.. .+.+..+.|...|++. |+.+|.++++|....+     |-...           .........   .
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~-----------~~~k~~~~~---~   89 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV-----------LRGKKVRTT---I   89 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE-----------ecCCCcCCC---C
Confidence            344555555544 5788999999988755 9999999988764332     11000           000000000   0


Q ss_pred             ecCCCCCCCCceeEEEEeehhhHHHHHhcCccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHH
Q 045767          335 TDGDENGEGKRLNKMFVCWERTSYAFKYHCRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYF  414 (737)
Q Consensus       335 ~~~~~~~~~~~f~~lF~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wf  414 (737)
                      . .......+.+.+-|-+.         .-..++..|.|+..... +..++++.+|...+ +++|+.+...++.+...-+
T Consensus        90 ~-~~~~~~~n~~~r~f~~~---------~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~  157 (277)
T PHA02517         90 S-RKAVAAPDRVNRQFVAT---------RPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDA  157 (277)
T ss_pred             C-CCCCCCCCcccCCCCCC---------CCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHH
Confidence            0 00000011111112111         13468999999986543 45667777776554 4667888777777754444


Q ss_pred             HHHHHHHcccCCCCCEEEEccCcchH
Q 045767          415 LKNINNALRLENGKGICILGDGDNGI  440 (737)
Q Consensus       415 l~~l~~~~~~~~~~p~~iitD~~~~l  440 (737)
                      |+......  +...++.|.||+....
T Consensus       158 l~~a~~~~--~~~~~~i~~sD~G~~y  181 (277)
T PHA02517        158 LEQALWAR--GRPGGLIHHSDKGSQY  181 (277)
T ss_pred             HHHHHHhc--CCCcCcEeeccccccc
Confidence            44433333  2223456779987653

>smart00774 WRKY DNA binding domain

Probab=82.27  E-value=1.6  Score=34.40  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             cCeEEEEEEee-CCCceEEEEEEcCCCceEEEeeeCCCccc
Q 045767          204 RSHVVCYECSD-LRCDWVIQAGRVSDGTTFIVTDFMPQHTC  243 (737)
Q Consensus       204 ~~~r~~~~C~~-~gCpwri~a~~~~~~~~~~I~~~~~~HnC  243 (737)
                      ...|..++|+. .+||++=.+.+..+++...++++..+|||
T Consensus        19 ~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       19 PFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            33466789998 89999888877766777888999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.55  E-value=2.5  Score=33.00  Aligned_cols=46  Identities=13%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             cCceEEEEeecCeEEEEEEeeC---CCceEEEEEEcCCCceEEEeeeCCCccc
Q 045767          194 EGFKLCVMENRSHVVCYECSDL---RCDWVIQAGRVSDGTTFIVTDFMPQHTC  243 (737)
Q Consensus       194 ~gf~~~~~kS~~~r~~~~C~~~---gCpwri~a~~~~~~~~~~I~~~~~~HnC  243 (737)
                      .|+.|...+.........|...   +|+++|...  .  +...|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~--~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--A--GDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--C--CCCEEEECCCccCC
Confidence            4777887777788889999863   899999996  2  23355556688887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=81.52  E-value=6.2  Score=35.16  Aligned_cols=77  Identities=14%  Similarity=-0.033  Sum_probs=55.6

Q ss_pred             CccEEEecCeeec-CCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHH
Q 045767          364 CRGILAVDGWKMN-NPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDY  442 (737)
Q Consensus       364 ~~~vi~iD~T~~~-~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~  442 (737)
                      -..++.+|.++.. ...++..+..+.+|..... .+++.+...++.+.+..+|.......  +...|.+|+||+..+...
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKR--GGRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHH--S-SE-SEEEEESCHHHHS
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccc--ccccceeccccccccccc
Confidence            3467899999666 3455688888999976654 55777777778888888888766666  233499999999998764


Q ss_pred             H
Q 045767          443 A  443 (737)
Q Consensus       443 A  443 (737)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            3

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	737
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 5e-11
 Identities = 59/506 (11%), Positives = 138/506 (27%), Gaps = 172/506 (33%)

Query: 179 DVGE----FRKAVQVFAVREGFKLCVMENRSHVVCYECSDL--------RCDWVIQAGRV 226
           + GE    ++  + VF   + F         +  C +  D+          D +I +   
Sbjct: 10  ETGEHQYQYKDILSVF--EDAFV-------DNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 227 SDGTTFIVTDFMPQHTCIRPPLKF-----QPQSKWISAIYLHRWKLQPKVSTVEIRDEIE 281
             GT  +    + +   +    KF     +   K++ +      + QP + T    ++ +
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRD 117

Query: 282 ATYGVVCPEGKLLSAANRAKHILGMDHYDGYAKLNQLKKEMERIDSHNIVLLETDGDENG 341
             Y       K     +R +  L            +L++ +  +     VL++      G
Sbjct: 118 RLYNDNQVFAKY--NVSRLQPYL------------KLRQALLELRPAKNVLIDGVL---G 160

Query: 342 EGK-----------RLNKMF---VCW----------------ERTSYAFK--------YH 363
            GK           ++       + W                ++  Y           + 
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 364 CRGILAVDGWK-------MNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYF-- 414
               L +   +        + PY++ +LV   L              +V++ ++W  F  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV---LL-------------NVQNAKAWNAFNL 264

Query: 415 ----L-----KNINNALRLENGKGICILGDGDNGI--DYAVEEF----------LPEAAY 453
               L     K + + L       I  L      +  D                LP    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 454 RQCCH----KVFTEMVKRFPAA--PVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEWL 507
               +     +  E ++   A     +H+      +  E+S      L   +  E     
Sbjct: 324 T--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAE----- 370

Query: 508 LQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFERR 567
            +  +   ++F  P      ++ LS+   +   + +   M +            +   + 
Sbjct: 371 YRKMFDRLSVF--PPSAHIPTILLSL---IWFDVIKSDVMVV-----------VNKLHKY 414

Query: 568 RMAVWNWYREKVTPTVREVIHDRTID 593
            +         ++      I    ++
Sbjct: 415 SLVEKQPKESTIS------IPSIYLE 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 91/590 (15%), Positives = 152/590 (25%), Gaps = 193/590 (32%)

Query: 9   EDKESGVVQR--SRQMRQNYSGPTNQANKTNCSPEYIRSRRTGNRRARNLNSDSGQAELS 66
             K+  +VQ+     +R NY    +        P  +       R    L +D  Q    
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYND-NQVFAK 128

Query: 67  FKNKRGRMKGKIARELFPDRKESY----------------EECMGEGPTRMVRDAVHW-S 109
           +   R +   K+ + L   R                    + C+       +   + W +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 110 KGWLTDDEE--EQLQDKNNDEDQLEGYSSEIDKGSLYKLRDAETSEDVGDWVKFDDTPRH 167
                  E   E LQ      D    ++S  D  S  KLR      ++   +K       
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 168 KMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRSHVVCYECSDLRCDWVIQAGRVS 227
            +VL       +V    KA   F                       +L C  ++      
Sbjct: 247 LLVL------LNVQN-AKAWNAF-----------------------NLSCKILL------ 270

Query: 228 DGTT--FIVTDFMPQHTCIRPPLKFQPQ-----------SKW------------------ 256
             TT    VTDF+   T     L                 K+                  
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 257 -ISAI------YLHRWKLQPKVSTVEIRDEIEATYGV--------------VCPEG---- 291
            +S I       L  W     V+  ++   IE++  V              V P      
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 292 -KLLSAANRAKHIL--GMDHYDGYAKLNQLKK--------EMERIDSHNIVLLETDGDEN 340
             LLS       ++   +   D    +N+L K        +   I   +I L      EN
Sbjct: 389 TILLS-------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 341 GEGKRLNKMFVCWERTSYAF--KYHCRGILA--VDG-WKMNNPYKSVM--LVAAGLDGNN 393
                L++  V      Y     +    ++   +D  +     Y  +   L         
Sbjct: 442 E--YALHRSIV----DHYNIPKTFDSDDLIPPYLDQYF-----YSHIGHHLKNIEHPERM 490

Query: 394 GILPVAFCEVDVEDLESWVYFLKN-INNALRLENGKGICI--LGDGDNGIDYAVEEFLPE 450
            +  + F      D      FL+  I +     N  G  +  L        Y  +     
Sbjct: 491 TLFRMVFL-----DFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---- 537

Query: 451 AAYRQCCHKVFTEMVK---RFPAAPVQHLFWSACRSTSEASFHKYMDLIQ 497
                     +  +V     F     ++L  S           KY DL++
Sbjct: 538 -------DPKYERLVNAILDFLPKIEENLICS-----------KYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 48/372 (12%), Positives = 107/372 (28%), Gaps = 122/372 (32%)

Query: 391 GNNGILPV---AFCE-VDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEE 446
               IL V   AF +  D +D++      K+I   L  E    I +  D  +G       
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQD---MPKSI---LSKEEIDHIIMSKDAVSGTLR---- 66

Query: 447 FLPEAAYRQCCHKVFTEMVKRFPAAPVQHLFWSACRSTSEASFHKYMDLIQQQSKECHEW 506
                                        LFW+      E    K+++ + + +   +++
Sbjct: 67  -----------------------------LFWTLLSKQEEM-VQKFVEEVLRIN---YKF 93

Query: 507 LLQTNWSSWALFSIPKWVKCTSVTLSITDKLHTRLRQYLEMSIARRFTGIARLTADLFER 566
           L     S          +  T + +   D+L+   + + + +++R            + +
Sbjct: 94  L----MSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRL---------QPYLK 139

Query: 567 RRMAVWNWYREKVTPTVREVIHDRTIDGQRFAMVEQNG---TTLKLTDTISMFYDLDMEA 623
            R A+      +    V  +I      G    ++   G   T +     + +     ++ 
Sbjct: 140 LRQAL---LELRPAKNV--LID-----G----VL---GSGKTWV----ALDVCLSYKVQC 178

Query: 624 MSCSCGLWQISGIPCAHACRAIQLNMGNVEEYVDNMMSVQNYCSTYAPGMAQLP------ 677
                  W               LN+ N       +  +Q       P            
Sbjct: 179 KMDFKIFW---------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 678 --KEHDWKSDAGNIILPPM----------IHSPKAVSA-KGSNEIVPNTSLQSIANYSHS 724
             + H  +++   ++              + + KA +A   S +I+  T  + + +    
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---F 280

Query: 725 ATNNQQVHIVLE 736
            +     HI L+
Sbjct: 281 LSAATTTHISLD 292

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	737
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	91.28
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	90.98
3hot_A	345	Transposable element mariner, complete CDS; protei	86.46

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=91.28  E-value=0.27  Score=39.69  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=35.8

Q ss_pred             eEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767          206 HVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP  246 (737)
Q Consensus       206 ~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~  246 (737)
                      -|-.++|+..+|+++-.+.+..++....++++..+|||+.+
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            46679999999999999988877777888999999999875

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=90.98  E-value=0.25  Score=39.77  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             eEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767          206 HVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP  246 (737)
Q Consensus       206 ~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~  246 (737)
                      -|-.++|+..||+++-.+.+..++....++++..+|||+.+
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46679999999999999998877788889999999999875

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=86.46  E-value=19  Score=37.16  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=40.4

Q ss_pred             CCcCceeEEEEeecCCCceEEEEEEEee---ccchhhHHHHHHHHHHHcc--cCC----CCCEEEEccCcc
Q 045767          377 NPYKSVMLVAAGLDGNNGILPVAFCEVD---VEDLESWVYFLKNINNALR--LEN----GKGICILGDGDN  438 (737)
Q Consensus       377 ~~y~~~ll~~~g~d~~~~~~plafal~~---~E~~es~~wfl~~l~~~~~--~~~----~~p~~iitD~~~  438 (737)
                      ..+++.++++.+++..|   .+++.++.   .-+.+.|.-+|+.+...+.  .+.    ..+++|+.|...
T Consensus       185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~  252 (345)
T 3hot_A          185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP  252 (345)
T ss_dssp             CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred             cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence            34566777777888777   56777776   5677888888887655542  121    347899999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	737
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	93.94

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.94  E-value=0.036  Score=42.01  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CeEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767          205 SHVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP  246 (737)
Q Consensus       205 ~~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~  246 (737)
                      -.|..++|+..+|+++=.+-+..++....++++..+|||+.+
T Consensus        29 ~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          29 YPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             SCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            347779999999999999988887788889999999999875