Citrus Sinensis ID: 045781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTECQYS
cHHHHHHHHHHHHHHHcccccccccccccEEEEccccEEEccccEEEEEEEEcccccEEEEEcEEEEEEEEEEEEEEccccccEEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccEEEEccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccccccc
cHHHHHHHHHHHHHHHHccccccccccccEEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEcccccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccEEEEEcccEEEEEEccccHccccccEEcccccccEEEEEcccccccEEcccccccccccccccccccHHHHHccHHHHHHHHHHHHccEEEEcccccccccccccccccc
MKLISRLLAFFGGLFASRIisdvsfdqnyyitwgydhfwtpnqgrEVVLSlcypsgagfgskllygsGFFYFRFrmkipvnsagVVTACYltsqghnhhevdieflgnnegkhiYISANaftngiggrkhrfslwfdttadfhTYQILWNHHQIAFHELEEIEASLWnaswatdggrmqiswsyapfearyrgfdvarcsvdkssdmnqcyashywwnevrfwELDSNQRRRYQNVRRHHMvydycsdthryprpptecqys
MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYdycsdthryprpptecqys
MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTECQYS
***ISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDT*************
*KLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVD*************WWNEVRFWE**SNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTEC*Y*
MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTECQYS
MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPT*C***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTECQYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q9SV60292 Xyloglucan endotransgluco yes no 0.992 0.890 0.464 1e-67
Q9SV61292 Putative xyloglucan endot no no 0.908 0.815 0.446 2e-60
Q9LJR7290 Xyloglucan endotransgluco no no 0.931 0.841 0.442 2e-59
Q9XIW1293 Probable xyloglucan endot no no 0.965 0.863 0.391 1e-48
Q41542293 Probable xyloglucan endot N/A no 0.942 0.843 0.397 2e-47
Q8LDW9290 Xyloglucan endotransgluco no no 0.912 0.824 0.379 8e-47
Q8LNZ5293 Probable xyloglucan endot N/A no 0.927 0.829 0.402 1e-45
Q39857295 Probable xyloglucan endot no no 0.904 0.803 0.403 7e-45
Q6YDN9295 Xyloglucan endotransgluco N/A no 0.923 0.820 0.383 2e-44
Q39099296 Xyloglucan endotransgluco no no 0.954 0.844 0.370 6e-44
>sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1 Back     alignment and function desciption
 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/284 (46%), Positives = 179/284 (63%), Gaps = 24/284 (8%)

Query: 2   KLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGS 61
           +L+S L   F     +R    + FD NY +TWG DH    NQG+EV LS+ Y SG+GF S
Sbjct: 9   ELVSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFES 68

Query: 62  KLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAF 121
           K  YGSGFF  R ++  P +SAGVVTA YLTS+G  H EVD EFLGN +GK I I  N F
Sbjct: 69  KSHYGSGFFQMRIKLP-PRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVF 127

Query: 122 TNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH---------------------ELE 160
           +NG GGR+ +F  WFD T  FHTY ILWN +QI F+                     +  
Sbjct: 128 SNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPM 187

Query: 161 EIEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVD-KSSDMNQCYASHYWWN 218
           ++ ASLWN  +WAT GG+ +I+W+YAPF+A+Y+GF    C V+ +S++ N C ++ YWWN
Sbjct: 188 QLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNANVCGSTRYWWN 247

Query: 219 EVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTECQYS 262
              + +L +N+++  +NVR  +M YDYCSD  RYP PP+EC+++
Sbjct: 248 TRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVPPSECRWN 291
May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJR7|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q41542|XTH_WHEAT Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q8LDW9|XTH9_ARATH Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2 Back     alignment and function description
>sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1 Back     alignment and function description
>sp|Q39857|XTH_SOYBN Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1 Back     alignment and function description
>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
255560117285 Xyloglucan endotransglucosylase/hydrolas 0.961 0.884 0.498 9e-75
224065383272 predicted protein [Populus trichocarpa] 0.942 0.908 0.507 6e-73
356524479286 PREDICTED: xyloglucan endotransglucosyla 0.908 0.832 0.490 8e-68
359480415280 PREDICTED: putative xyloglucan endotrans 0.896 0.839 0.503 4e-67
15235587292 xyloglucan endotransglucosylase/hydrolas 0.992 0.890 0.464 6e-66
147814856 1159 hypothetical protein VITISV_032683 [Viti 0.866 0.195 0.507 1e-65
297790584292 hypothetical protein ARALYDRAFT_359039 [ 0.992 0.890 0.450 3e-63
297790582299 hypothetical protein ARALYDRAFT_359038 [ 0.927 0.812 0.468 6e-61
255554072289 Xyloglucan endotransglucosylase/hydrolas 0.889 0.806 0.465 2e-60
297790590296 predicted protein [Arabidopsis lyrata su 0.904 0.800 0.450 2e-59
>gi|255560117|ref|XP_002521076.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223539645|gb|EEF41227.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 138/277 (49%), Positives = 181/277 (65%), Gaps = 25/277 (9%)

Query: 7   LLAFF--GGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLL 64
            LAF   GG+ ++RI     FDQ Y +TWG DH    NQG+E+ LS+   SGAGFGSKL 
Sbjct: 8   FLAFLLVGGVLSNRISDTGLFDQTYQVTWGKDHVLPLNQGKEIQLSMDKSSGAGFGSKLS 67

Query: 65  YGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNG 124
           +GSGFF+ R R+  P +SAGVVTA YLTS G NH E+D EFLGN EGK I +  N F NG
Sbjct: 68  FGSGFFHLRIRLP-PKDSAGVVTAYYLTSHGDNHDELDFEFLGNREGKPITLQTNVFANG 126

Query: 125 IGGRKHRFSLWFDTTADFHTYQILWNHHQIAF---------------------HELEEIE 163
           +G R+ R  LWFD  ADFH Y+ILWN HQI F                      +  +IE
Sbjct: 127 LGNREQRMYLWFDPAADFHNYKILWNQHQIVFFVDDIPIRVFKNKTNIGVSYPSKPMQIE 186

Query: 164 ASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRF 222
           ASLW+  SWATDGG+ + +WS+APF+A ++GFD++ CS+ ++ +   C +  YWWN  ++
Sbjct: 187 ASLWDGDSWATDGGQTKTNWSHAPFQAHFQGFDISGCSLPETPNTQPCSSHKYWWNSDKY 246

Query: 223 WELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRPPTEC 259
           W+L+S QR+ YQ+VR+ ++ YDYCSD  R+P PP EC
Sbjct: 247 WQLNSTQRKTYQDVRKKYLTYDYCSDRPRFPTPPPEC 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065383|ref|XP_002301792.1| predicted protein [Populus trichocarpa] gi|222843518|gb|EEE81065.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524479|ref|XP_003530856.1| PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|359480415|ref|XP_003632454.1| PREDICTED: putative xyloglucan endotransglucosylase/hydrolase protein 1-like [Vitis vinifera] gi|296086841|emb|CBI33008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15235587|ref|NP_193045.1| xyloglucan endotransglucosylase/hydrolase protein 2 [Arabidopsis thaliana] gi|38605517|sp|Q9SV60.1|XTH2_ARATH RecName: Full=Xyloglucan endotransglucosylase/hydrolase protein 2; Short=At-XTH2; Short=XTH-2; Flags: Precursor gi|5123950|emb|CAB45508.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] gi|7268011|emb|CAB78351.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] gi|67633744|gb|AAY78796.1| putative xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] gi|332657829|gb|AEE83229.1| xyloglucan endotransglucosylase/hydrolase protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147814856|emb|CAN63612.1| hypothetical protein VITISV_032683 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297790584|ref|XP_002863177.1| hypothetical protein ARALYDRAFT_359039 [Arabidopsis lyrata subsp. lyrata] gi|297309011|gb|EFH39436.1| hypothetical protein ARALYDRAFT_359039 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297790582|ref|XP_002863176.1| hypothetical protein ARALYDRAFT_359038 [Arabidopsis lyrata subsp. lyrata] gi|297309010|gb|EFH39435.1| hypothetical protein ARALYDRAFT_359038 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255554072|ref|XP_002518076.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223542672|gb|EEF44209.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297790590|ref|XP_002863180.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309014|gb|EFH39439.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.591 0.530 0.538 2.3e-68
TAIR|locus:2086959290 XTH3 "xyloglucan endotransgluc 0.541 0.489 0.5 1.8e-62
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.515 0.462 0.540 1.6e-61
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.572 0.511 0.441 1.6e-51
TAIR|locus:2125437290 XTH9 "xyloglucan endotransgluc 0.511 0.462 0.416 9.8e-50
TAIR|locus:2065821296 XTH4 "xyloglucan endotransgluc 0.503 0.445 0.467 1.2e-47
TAIR|locus:2823919305 XTH8 "xyloglucan endotransgluc 0.580 0.498 0.421 6.8e-47
TAIR|locus:2137609293 XTH7 "xyloglucan endotransgluc 0.568 0.508 0.377 4.1e-45
TAIR|locus:2129445289 XTH15 "xyloglucan endotransglu 0.541 0.491 0.437 1.4e-44
TAIR|locus:2174497284 TCH4 "Touch 4" [Arabidopsis th 0.576 0.531 0.418 4.7e-44
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 423 (154.0 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 84/156 (53%), Positives = 102/156 (65%)

Query:     2 KLISRLLAFFGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGS 61
             +L+S L   F     +R    + FD NY +TWG DH    NQG+EV LS+ Y SG+GF S
Sbjct:     9 ELVSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFES 68

Query:    62 KLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAF 121
             K  YGSGFF  R ++  P +SAGVVTA YLTS+G  H EVD EFLGN +GK I I  N F
Sbjct:    69 KSHYGSGFFQMRIKLP-PRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVF 127

Query:   122 TNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
             +NG GGR+ +F  WFD T  FHTY ILWN +QI F+
Sbjct:   128 SNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFY 163
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
TAIR|locus:2086959 XTH3 "xyloglucan endotransglucosylase/hydrolase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125437 XTH9 "xyloglucan endotransglucosylase/hydrolase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065821 XTH4 "xyloglucan endotransglucosylase/hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2823919 XTH8 "xyloglucan endotransglucosylase/hydrolase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137609 XTH7 "xyloglucan endotransglucosylase/hydrolase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129445 XTH15 "xyloglucan endotransglucosylase/hydrolase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174497 TCH4 "Touch 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SV60XTH2_ARATH2, ., 4, ., 1, ., 2, 0, 70.46470.99230.8904yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.270.1
hypothetical protein (257 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-96
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 5e-54
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 1e-40
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 7e-16
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 2e-12
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 3e-09
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 1e-04
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  283 bits (727), Expect = 1e-96
 Identities = 125/264 (47%), Positives = 156/264 (59%), Gaps = 27/264 (10%)

Query: 21  SDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPV 80
              SFD+N+++TWG DH    N G  V L+L   SG+GF SK  Y  GFF    R+K+P 
Sbjct: 2   VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFF--SMRIKLPP 59

Query: 81  -NSAGVVTACYLTSQG-HNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDT 138
            +SAG VTA YL+SQG  NH E+D EFLGN  G+   +  N F NG+GGR+ R  LWFD 
Sbjct: 60  GDSAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDP 119

Query: 139 TADFHTYQILWNHHQIAF------------HELEE----------IEASLWNAS-WATDG 175
           TADFHTY ILWN HQI F            +E             + AS+W+ S WAT G
Sbjct: 120 TADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQG 179

Query: 176 GRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQN 235
           GR++I WSYAPF A YR F +  C VD     + C  +  WWN   + +L +NQ+R  + 
Sbjct: 180 GRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEW 239

Query: 236 VRRHHMVYDYCSDTHRYPRPPTEC 259
           VRR++MVYDYC D  RYP PP EC
Sbjct: 240 VRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 99.96
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 99.96
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 99.92
cd08023235 GH16_laminarinase_like Laminarinase, member of the 99.86
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.85
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.83
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 99.83
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.83
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.76
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.71
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.66
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.59
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 98.7
PF03935 504 SKN1: Beta-glucan synthesis-associated protein (SK 97.87
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-78  Score=559.40  Aligned_cols=256  Identities=39%  Similarity=0.734  Sum_probs=229.4

Q ss_pred             hhhHHHHH--hccceeeeeccCCccccCceeeeeCCCeEEcCCCcEEEEEEeCCCCceeEEeeEEEEEEeeeEEEEEec-
Q 045781            3 LISRLLAF--FGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIP-   79 (262)
Q Consensus         3 ~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~y~yG~~e~~a~mKl~-   79 (262)
                      |+++||+|  .+|++--+. +..+|.++|.+.|+.+|+.+.++|+.|+|+||+.+|++|+||.+|+||+||  |+||+| 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E--~riKLp~   80 (291)
T PLN03161          4 LKTLLVALFAALAAFDRSF-VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIE--MLIKLVP   80 (291)
T ss_pred             HHHHHHHHHHHHHhcCCCc-ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEE--EEEEeCC
Confidence            44455543  356555544 677899999999999999998888899999999999999999999999999  999999 


Q ss_pred             CCCCceEEEEEEeeCCCCCCceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE---
Q 045781           80 VNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF---  156 (262)
Q Consensus        80 g~s~GvVtAf~l~s~~~~~dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f---  156 (262)
                      |+++|+||||||++.++.||||||||||+++|+|++||||+|.+|.++|++++.++|||+++||+|+|+|+|++|+|   
T Consensus        81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD  160 (291)
T PLN03161         81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD  160 (291)
T ss_pred             CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence            88899999999999777899999999999999999999999999999999999999999999999999999999999   


Q ss_pred             -------eec-----------c-ceEeecccC-CcCCCCcceeecCCCCCeEEEEceEEEeeeeeCCCCCCCCCcC--Cc
Q 045781          157 -------HEL-----------E-EIEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYA--SH  214 (262)
Q Consensus       157 -------~n~-----------~-~i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v~~C~~~~~~~~~~C~~--~~  214 (262)
                             +|.           + .|++|||+| +|||+||++||||++|||+|.|++|.++||.+++......|.+  +.
T Consensus       161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~  240 (291)
T PLN03161        161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPS  240 (291)
T ss_pred             CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcc
Confidence                   221           1 199999999 9999999999999999999999999999999865311146975  46


Q ss_pred             ccccccccccCCHHHHHHHHHHhhcCeeEecCcCCCCCCC-CCCCccC
Q 045781          215 YWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPR-PPTECQY  261 (262)
Q Consensus       215 ~ww~~~~~~~l~~~q~~~~~~v~~~~m~YdYC~D~~R~p~-~p~EC~~  261 (262)
                      .||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.+
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~  288 (291)
T PLN03161        241 NWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFK  288 (291)
T ss_pred             ccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence            7999999999999999999999999999999999999998 7999965

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 3e-47
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 7e-30
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 8e-30
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 8e-29
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 1e-28
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 2e-09
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 3e-07
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 3e-07
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 3e-07
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 4e-07
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 4e-07
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 6e-07
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 1e-06
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 1e-06
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 2e-06
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 1e-05
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 141/268 (52%), Gaps = 25/268 (9%)
Query: 16  ASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFR 75
           A R   DV+F +NY  TW +DH    N G E+ L L   +G GF SK  Y  G F  + +
Sbjct: 8   ALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 67
Query: 76  MKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLW 135
           + +P +SAG VTA YL+SQ   H E+D EFLGN  G+   +  N FT G G R+ R  LW
Sbjct: 68  L-VPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLW 126
Query: 136 FDTTADFHTYQILWNHHQIA----------------------FHELEEIEASLWNA-SWA 172
           FD T +FH Y +LWN + I                       F++  +I +SLWNA  WA
Sbjct: 127 FDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWA 186
Query: 173 TDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRR 232
           T GG  +  WS APF A YR F +  C     +       +  WW++  F +LD+ Q RR
Sbjct: 187 TRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGAR-WWDQKEFQDLDAFQYRR 245
Query: 233 YQNVRRHHMVYDYCSDTHRYPRPPTECQ 260
              VR+ + +Y+YC+D  RYP  P EC+
Sbjct: 246 LSWVRQKYTIYNYCTDRSRYPSMPPECK 273
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 2e-71
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 8e-62
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 3e-35
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 2e-33
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 2e-33
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 8e-31
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 1e-29
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 4e-28
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 3e-18
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-09
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 4e-06
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  219 bits (560), Expect = 2e-71
 Identities = 107/271 (39%), Positives = 140/271 (51%), Gaps = 27/271 (9%)

Query: 16  ASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFR 75
           A R   DV+F +NY  TW +DH    N G E+ L L   +G GF SK  Y  G  +F  +
Sbjct: 8   ALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFG--HFSMQ 65

Query: 76  MK-IPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSL 134
           MK +P +SAG VTA YL+SQ   H E+D EFLGN  G+   +  N FT G G R+ R  L
Sbjct: 66  MKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYL 125

Query: 135 WFDTTADFHTYQILWNHHQIAF-------HELE---------------EIEASLWNAS-W 171
           WFD T +FH Y +LWN + I F          +               +I +SLWNA  W
Sbjct: 126 WFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDW 185

Query: 172 ATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRR 231
           AT GG  +  WS APF A YR F +  C     +          WW++  F +LD+ Q R
Sbjct: 186 ATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYR 244

Query: 232 RYQNVRRHHMVYDYCSDTHRYPRPPTECQYS 262
           R   VR+ + +Y+YC+D  RYP  P EC+  
Sbjct: 245 RLSWVRQKYTIYNYCTDRSRYPSMPPECKRD 275
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 99.97
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 99.95
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 99.95
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 99.94
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 99.92
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 99.92
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 99.92
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.91
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 99.9
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 99.9
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 99.9
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 99.89
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.89
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 99.87
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.86
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.86
3rq0_A269 Glycosyl hydrolases family protein 16; structural 99.86
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 99.83
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.81
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.79
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.7
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.65
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.05
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 97.14
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=8.7e-71  Score=504.62  Aligned_cols=241  Identities=44%  Similarity=0.802  Sum_probs=220.5

Q ss_pred             eeeccCCccccCceeeeeCCCeEEcCCCcEEEEEEeCCCCceeEEeeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC
Q 045781           17 SRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG   95 (262)
Q Consensus        17 ~~~~~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~   95 (262)
                      .+...+.+|.++|.++|+.+||++.++|+.|+|+|++++|++|+||.+|+||+||  ||||+| |+++|+|+||||++++
T Consensus         9 ~~~~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~E--ar~Klp~g~s~G~wpAfwll~~~   86 (278)
T 1umz_A            9 LRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFS--MQMKLVPGDSAGTVTAFYLSSQN   86 (278)
T ss_dssp             ---CCCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEE--EEEECCCSCCTTEEEEEEEECSS
T ss_pred             cccccCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEE--EEEEeCCCCCCceEEEEEEecCC
Confidence            3344678999999999999999998888889999999999999999999999999  999999 7779999999999988


Q ss_pred             CCCCceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE----------eec------
Q 045781           96 HNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF----------HEL------  159 (262)
Q Consensus        96 ~~~dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f----------~n~------  159 (262)
                      |.+||||||++|+++|+|++||||+|.+|.+++++++.+++||+++||+|+|+|+|++|+|          ++.      
T Consensus        87 p~~gEIDmE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~  166 (278)
T 1umz_A           87 SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVK  166 (278)
T ss_dssp             SSCCEEEEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCC
T ss_pred             CCCCeEEEEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCcc
Confidence            8899999999999999999999999999999999999999999999999999999999999          111      


Q ss_pred             -c----c-eEeecccC-CcCCCCcceeecCCCCCeEEEEceEEEeeeeeCCCCCCCCCcC-CcccccccccccCCHHHHH
Q 045781          160 -E----E-IEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYA-SHYWWNEVRFWELDSNQRR  231 (262)
Q Consensus       160 -~----~-i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v~~C~~~~~~~~~~C~~-~~~ww~~~~~~~l~~~q~~  231 (262)
                       +    . |+++||.| +||++||++++||+++||+++|+.+++.||.++.. . +.|.+ +..||+++.+++|+++|++
T Consensus       167 ~Pf~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~-~-~~c~~~~~~~~~~~~~~~l~~~~~~  244 (278)
T 1umz_A          167 FPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVE-A-KFCATQGARWWDQKEFQDLDAFQYR  244 (278)
T ss_dssp             CSCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSS-S-CCCTTTTCSGGGSGGGSSCCHHHHH
T ss_pred             CcCCCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCC-C-CccCCCcccccccCccccCCHHHHH
Confidence             1    1 99999999 99999998899999999999999999999987543 2 46975 4679999999999999999


Q ss_pred             HHHHHhhcCeeEecCcCCCCCCCCCCCccC
Q 045781          232 RYQNVRRHHMVYDYCSDTHRYPRPPTECQY  261 (262)
Q Consensus       232 ~~~~v~~~~m~YdYC~D~~R~p~~p~EC~~  261 (262)
                      +|+|||+||||||||+|++|||++||||.+
T Consensus       245 ~~~~~~~~~~~y~yc~d~~r~~~~~~ec~~  274 (278)
T 1umz_A          245 RLSWVRQKYTIYNYCTDRSRYPSMPPECKR  274 (278)
T ss_dssp             HHHHHHHHTEEEEGGGCTTTCSSCCTHHHH
T ss_pred             HHHHHHHCCeEEecCCCCCcCCCCCcccCC
Confidence            999999999999999999999999999964
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 6e-68
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 6e-26
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 8e-06
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 4e-05
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 6e-04
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  209 bits (532), Expect = 6e-68
 Identities = 103/264 (39%), Positives = 138/264 (52%), Gaps = 25/264 (9%)

Query: 22  DVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVN 81
           DV+F +NY  TW +DH    N G E+ L L   +G GF SK  Y  G F  + ++ +P +
Sbjct: 3   DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKL-VPGD 61

Query: 82  SAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTAD 141
           SAG VTA YL+SQ   H E+D EFLGN  G+   +  N FT G G R+ R  LWFD T +
Sbjct: 62  SAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKE 121

Query: 142 FHTYQILWNHHQI----------------------AFHELEEIEASLWNAS-WATDGGRM 178
           FH Y +LWN + I                       F++  +I +SLWNA  WAT GG  
Sbjct: 122 FHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLE 181

Query: 179 QISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRR 238
           +  WS APF A YR F +  C     +          WW++  F +LD+ Q RR   VR+
Sbjct: 182 KTDWSKAPFIASYRSFHIDGCEASVEAKFCAT-QGARWWDQKEFQDLDAFQYRRLSWVRQ 240

Query: 239 HHMVYDYCSDTHRYPRPPTECQYS 262
            + +Y+YC+D  RYP  P EC+  
Sbjct: 241 KYTIYNYCTDRSRYPSMPPECKRD 264
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 99.94
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 99.93
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.8
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.73
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.68
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.68
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 89.51
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=2.9e-74  Score=522.82  Aligned_cols=239  Identities=44%  Similarity=0.803  Sum_probs=222.2

Q ss_pred             cCCccccCceeeeeCCCeEEcCCCcEEEEEEeCCCCceeEEeeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCCCCCC
Q 045781           21 SDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQGHNHH   99 (262)
Q Consensus        21 ~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~~~~d   99 (262)
                      ..++|+++|.++|+.+||++.++|..|+|+||+.+|++|+||++|+||+||  ||||+| |+.+|++++||++++++.||
T Consensus         2 ~~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~E--ariKlp~G~g~g~~~~f~~~s~~~~~d   79 (267)
T d1umza_           2 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFS--MQMKLVPGDSAGTVTAFYLSSQNSEHD   79 (267)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEE--EEEECCCSCCTTEEEEEEEECSSSSCC
T ss_pred             ccccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEE--EEEEcCCCCccEEEEEeeecCCCCCCC
Confidence            357899999999999999999999999999999999999999999999999  999999 87899999999999888899


Q ss_pred             ceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE----------eeccc--------
Q 045781          100 EVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF----------HELEE--------  161 (262)
Q Consensus       100 EID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f----------~n~~~--------  161 (262)
                      ||||||+|+++++|+.+|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|          +|.+.        
T Consensus        80 EIDiE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~  159 (267)
T d1umza_          80 EIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFN  159 (267)
T ss_dssp             EEEEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCS
T ss_pred             eEEEEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999          22211        


Q ss_pred             ----eEeecccC-CcCCCCcceeecCCCCCeEEEEceEEEeeeeeCCCCCCCCCcCCcccccccccccCCHHHHHHHHHH
Q 045781          162 ----IEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNV  236 (262)
Q Consensus       162 ----i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v~~C~~~~~~~~~~C~~~~~ww~~~~~~~l~~~q~~~~~~v  236 (262)
                          |+++||+| +|||+||+.+|||+++||+|.|++|+|+||.+..... ..|..+..||++..+++|+.+|+++|+||
T Consensus       160 ~pm~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (267)
T d1umza_         160 QPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAK-FCATQGARWWDQKEFQDLDAFQYRRLSWV  238 (267)
T ss_dssp             SCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSC-CCTTTTCSGGGSGGGSSCCHHHHHHHHHH
T ss_pred             eEEEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCCc-ccCCCCCccccccccccCCHHHHHHHHHH
Confidence                99999999 9999999999999999999999999999999876532 23345678999999999999999999999


Q ss_pred             hhcCeeEecCcCCCCCCCCCCCccCC
Q 045781          237 RRHHMVYDYCSDTHRYPRPPTECQYS  262 (262)
Q Consensus       237 ~~~~m~YdYC~D~~R~p~~p~EC~~~  262 (262)
                      |+||||||||+|++|||.+||||.+|
T Consensus       239 ~~~~~~y~yC~d~~r~~~~p~EC~~~  264 (267)
T d1umza_         239 RQKYTIYNYCTDRSRYPSMPPECKRD  264 (267)
T ss_dssp             HHHTEEEEGGGCTTTCSSCCTHHHHH
T ss_pred             HHCCcEEccCCCCCcCCCCCcccCCC
Confidence            99999999999999999999999764
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure