Citrus Sinensis ID: 045793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MRGIVRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHYMQLPDLIS
Secondary Structure (PSIPRED)
ccccHHHHHHcccccccccccccccEEEEEEEcccEEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEHccccccccccccccEEEEEEccccEEEEEEEHHHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHccccccccccHHHHcc
Coil and Loop (DISEMBL)
mrgivrkqwccgaksfpsdseaeeghVRVFVGKDMQFKFEMEANYLNLFENLLKLSeeefgfsydgALRIACEIDVFQYLLLLLKtgnpsahymqlpdlis
Flexible Loop (DISEMBL)
mrgivrkqwccgaksfpsdseaeegHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGnpsahymqlpdlis
Low Complexity Region (SEG)
MRGIVRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHYMQLPDLIS
Disordered region (IsUnstruct)
****VRKQWCCGAK**********GHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGNP************
Disordered Region (DISOPRED)
*************************HVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLL************QLPDLI*
Disordered Region (DISEMBL)
MRGIVRKQWCCGAKS********EGHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHYMQLPDLIS
Disordered Region (DISPRO)
*RGIVRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN****YMQ*****S
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRGIVRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNLFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHYMQLPDLIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.782	0.877	0.349	3e-06
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.584	0.641	0.396	1e-05
P33081	82	Auxin-induced protein 15A	no	no	0.653	0.804	0.371	5e-05
P33082	82	Auxin-induced protein X15	no	no	0.712	0.878	0.342	0.0001
P33080	92	Auxin-induced protein X10	no	no	0.712	0.782	0.342	0.0003

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 5  VRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGF 62
          +RK      ++     + E+G++ V+VG+ M+ +F +  +YLN   F++LL  +EEEFG+
Sbjct: 8  IRKASFSANQASSKAVDVEKGYLAVYVGEKMR-RFVIPVSYLNKPSFQDLLSQAEEEFGY 66

Query: 63 SY-DGALRIACEIDVFQYLLLLL 84
           + +G L I C  DVFQ++   L
Sbjct: 67 HHPNGGLTIPCSEDVFQHITSFL 89

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 4/63 (6%)

Query: 21 EAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYD-GALRIACEIDVF 77
          +A +G++ V+VG++M+ +F +  ++LN  LF++LL  +EEEFG+ +  G L I C  D+F
Sbjct: 24 DAPKGYLAVYVGENMK-RFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLF 82

Query: 78 QYL 80
          Q++
Sbjct: 83 QHI 85

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 12 GAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNL--FENLLKLSEEEFGFSYD-GAL 68
          G +     ++A +G++ V+VG+ ++ +F +  +YLN   F++LL  +EEEFG+ +  G L
Sbjct: 7  GIRKASKAADAPKGYLAVYVGEKLK-RFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGL 65

Query: 69 RIACEIDVFQ 78
           I C  DVFQ
Sbjct: 66 TIPCSEDVFQ 75

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 12 GAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNL--FENLLKLSEEEFGFSYD-GAL 68
          G +   +  +A +G++ V+VG+ M+ +F +  +Y+N   F++LL  +EEEFG+ +  G L
Sbjct: 7  GIRKASNAVDAPKGYLAVYVGEKMK-RFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGL 65

Query: 69 RIACEIDVFQYLLLLL 84
           I C  +VFQ +   L
Sbjct: 66 TIPCSEEVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 5  VRKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNL--FENLLKLSEEEFGF 62
          +RK      ++     E  +G++ V+VG  M+ +F +  +YLN   F++LL  +EEEFG+
Sbjct: 8  IRKTSIAANQASSKSVEVPKGYLVVYVGDKMR-RFLIPVSYLNQPSFQDLLNQAEEEFGY 66

Query: 63 SYD-GALRIACEIDVF 77
           +  G L I C+ D F
Sbjct: 67 DHPMGGLTIPCKEDEF 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
224065607	100	SAUR family protein [Populus trichocarpa	0.871	0.88	0.68	7e-27
297846742	103	hypothetical protein ARALYDRAFT_891317 [	0.900	0.883	0.583	1e-20
15218238	104	putative auxin-responsive protein [Arabi	0.891	0.865	0.568	2e-19
297795289	111	auxin-responsive family protein [Arabido	0.871	0.792	0.6	4e-19
15238955	111	SAUR-like auxin-responsive protein [Arab	0.871	0.792	0.589	1e-18
361068297	123	Pinus taeda anonymous locus 2_10399_01 g	0.900	0.739	0.347	5e-09
294461767	177	unknown [Picea sitchensis]	0.871	0.497	0.347	8e-09
148907950	139	unknown [Picea sitchensis]	0.811	0.589	0.348	1e-07
297606452	134	Os06g0701900 [Oryza sativa Japonica Grou	0.861	0.649	0.395	8e-07
162459692	147	small auxin up RNA1 [Zea mays] gi|690685	0.623	0.428	0.439	1e-06

>gi|224065607|ref|XP_002301881.1| SAUR family protein [Populus trichocarpa] gi|222843607|gb|EEE81154.1| SAUR family protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 78/100 (78%), Gaps = 12/100 (12%)

Query: 1   MRGIVRKQWCCGAKSFPS-DSEAE--------EGHVRVFVGKD-MQFKFEMEANYLN--L 48
           M GIVRK WCCGAK FPS D  AE        EGHVRV VGKD +Q +FEMEA++LN  L
Sbjct: 1   MSGIVRKLWCCGAKGFPSADDSAEDQLALPPPEGHVRVCVGKDNVQCRFEMEAHFLNHPL 60

Query: 49  FENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN 88
           FE+LL+LSE+E G++YDGALRIACEI +FQYLL LLKTGN
Sbjct: 61  FEDLLRLSEQEHGYAYDGALRIACEIHLFQYLLHLLKTGN 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846742|ref|XP_002891252.1| hypothetical protein ARALYDRAFT_891317 [Arabidopsis lyrata subsp. lyrata] gi|297337094|gb|EFH67511.1| hypothetical protein ARALYDRAFT_891317 [Arabidopsis lyrata subsp. lyrata]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 5/96 (5%)

Query: 4  IVRKQWCCGAKSFPSDSE-AEEGHVRVFVG--KDMQFKFEMEANYLN--LFENLLKLSEE 58
          +V+K  CCGAKSF   +   EEG VRV+VG  +D Q K EM+A++L   LFE+LL+LSEE
Sbjct: 1  MVKKLLCCGAKSFSQRARLPEEGRVRVYVGNDRDTQCKLEMDADFLTHPLFEDLLRLSEE 60

Query: 59 EFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHYM 94
          EFG SYDGALRIACEI VF  L+  LK+ + S HY+
Sbjct: 61 EFGHSYDGALRIACEIQVFMNLIHYLKSTSHSPHYI 96

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218238|ref|NP_175002.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|12321539|gb|AAG50826.1|AC026757_7 auxin-induced protein, putative [Arabidopsis thaliana] gi|67633428|gb|AAY78639.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|332193822|gb|AEE31943.1| putative auxin-responsive protein [Arabidopsis thaliana]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 5/95 (5%)

Query: 4  IVRKQWCCGAKSFPSDSE-AEEGHVRVFVG--KDMQFKFEMEANYLN--LFENLLKLSEE 58
          +V+K  CCGAKSF   +   +EG VRV+VG  +D Q K EM+A++L   LFE+LL+LSEE
Sbjct: 1  MVKKLLCCGAKSFSQRARLPDEGRVRVYVGNDRDTQCKLEMDADFLTHPLFEDLLRLSEE 60

Query: 59 EFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHY 93
          EFG SYDGALRIACEI VF  L+  LK+ + + HY
Sbjct: 61 EFGHSYDGALRIACEIQVFLNLIHYLKSTSHAPHY 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795289|ref|XP_002865529.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297311364|gb|EFH41788.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 67/95 (70%), Gaps = 7/95 (7%)

Query: 1  MRGIVRKQWCCGAKSFPSDSEA---EEGHVRVFVGKDM--QFKFEMEANYLN--LFENLL 53
          MR +V+K   CGAK+  S   +   EEG VRVFVGKD   Q K E+EAN LN  + E+LL
Sbjct: 1  MRSVVKKLLWCGAKNNASSRTSALPEEGRVRVFVGKDRESQCKLEVEANLLNHPMLEDLL 60

Query: 54 KLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN 88
          +LSEEEFG SY+GALRIACEIDVF  L+ L KT N
Sbjct: 61 RLSEEEFGHSYEGALRIACEIDVFIKLVNLHKTTN 95

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238955|ref|NP_199056.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|9759477|dbj|BAB10482.1| unnamed protein product [Arabidopsis thaliana] gi|332007424|gb|AED94807.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 67/95 (70%), Gaps = 7/95 (7%)

Query: 1  MRGIVRKQWCCGAKSFPSDSEA---EEGHVRVFVGKDM--QFKFEMEANYLN--LFENLL 53
          MR +V+K   CGAK+  S   +   EEG VRV+VGKD   Q K E+EAN LN  + E+LL
Sbjct: 1  MRTLVKKLLWCGAKNISSSRTSALPEEGRVRVYVGKDKESQCKLEVEANLLNHPMLEDLL 60

Query: 54 KLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN 88
          +LSEEEFG SY+GALRIACEIDVF  L+ L KT N
Sbjct: 61 RLSEEEFGHSYEGALRIACEIDVFIKLVNLHKTTN 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|361068297|gb|AEW08460.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141549|gb|AFG52138.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141551|gb|AFG52139.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141553|gb|AFG52140.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141555|gb|AFG52141.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141557|gb|AFG52142.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141559|gb|AFG52143.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141560|gb|AFG52144.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141561|gb|AFG52145.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141563|gb|AFG52146.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141564|gb|AFG52147.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141566|gb|AFG52148.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141568|gb|AFG52149.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141570|gb|AFG52150.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141571|gb|AFG52151.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence gi|383141573|gb|AFG52152.1| Pinus taeda anonymous locus 2_10399_01 genomic sequence

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 8   QWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYD 65
           Q CC  ++ P   +  EG++ V+VG++ + +F +  +YL+  +F  LL  +EEEFGF + 
Sbjct: 2   QDCCTNRALPP-PDVPEGYLAVYVGRERR-RFIIPTSYLSRPVFRTLLDRAEEEFGFDHR 59

Query: 66  GALRIACEIDVFQYLLLLLKTGNPSAHYMQLPDLI 100
           G L I CE+ VF  +L +L   +P+   + L +L+
Sbjct: 60  GGLTIPCEVSVFNQVLRVLGKNDPAGQNLSLDELL 94

Source: Pinus radiata

Species: Pinus radiata

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461767|gb|ADE76442.1| unknown [Picea sitchensis]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 10  CCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGA 67
           CC   + P   +  EG++ V+VG++ + +F +  +YL+  +F  LL  +EEEFGF + G 
Sbjct: 54  CCRTPASPP-PDVPEGYLAVYVGRERR-RFIIPTDYLSRPVFRTLLDRAEEEFGFDHQGG 111

Query: 68  LRIACEIDVFQYLLLLLKTGNPSAHYMQLPDL 99
           L I CE++VF+ +L +L   +P+   + L D 
Sbjct: 112 LTIPCEVNVFKQVLRVLGRNDPAGQSLSLEDF 143

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907950|gb|ABR17095.1| unknown [Picea sitchensis]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 8   QWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYD 65
           Q CC  +++P   +  EG++ V+VG++ + +F +  +YL+  +F  LL  +EEEFGF + 
Sbjct: 56  QDCCTNQAWPP-PDVPEGYLAVYVGRERR-RFIIPTSYLSRPVFRTLLDRAEEEFGFDHQ 113

Query: 66  GALRIACEIDVFQYLLLLLKTGNPSA 91
           G L I CE+ VF  +L +    +P+ 
Sbjct: 114 GGLTIPCEVSVFTQVLRVFGRNDPAG 139

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297606452|ref|NP_001058487.2| Os06g0701900 [Oryza sativa Japonica Group] gi|53792744|dbj|BAD53780.1| auxin-induced protein-like [Oryza sativa Japonica Group] gi|125556656|gb|EAZ02262.1| hypothetical protein OsI_24361 [Oryza sativa Indica Group] gi|255677369|dbj|BAF20401.2| Os06g0701900 [Oryza sativa Japonica Group]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 9/96 (9%)

Query: 1   MRGIVR-----KQWCCGAKSFPSD-SEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENL 52
           +R IVR     K+W   A   P   S   +G   V+VG++M+ +F +   YL    FE L
Sbjct: 16  IRDIVRLQQLLKRWKKLATMAPGGRSGVPKGSFAVYVGEEMR-RFVIPTEYLGHWAFERL 74

Query: 53  LKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN 88
           L+ +EEEFGF + GALRI C++  F+  L L+  GN
Sbjct: 75  LRDAEEEFGFRHQGALRIPCDVAAFEATLRLVAAGN 110

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162459692|ref|NP_001105573.1| small auxin up RNA1 [Zea mays] gi|6906857|gb|AAF31170.1|AF148498_1 unknown [Zea mays] gi|413943207|gb|AFW75856.1| putative uncharacterized protein saur1 [Zea mays]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 25  GHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLL 82
           G   V+VG++M+ +F +   YL    F +LL+ +EEEFGF ++GALRI C++D FQ +L 
Sbjct: 57  GSFAVYVGEEMR-RFVIPTEYLGHWAFADLLREAEEEFGFRHEGALRIPCDVDSFQGILR 115

Query: 83  LLKTGN 88
           L++ G 
Sbjct: 116 LVQQGQ 121

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2030809	104	AT1G43040 "AT1G43040" [Arabido	0.891	0.865	0.568	4.9e-21
TAIR|locus:2162356	111	AT5G42410 "AT5G42410" [Arabido	0.871	0.792	0.589	9.2e-20
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.782	0.415	0.369	1.8e-09
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.673	0.425	0.397	2.2e-09
TAIR|locus:2011801	110	AT1G56150 "AT1G56150" [Arabido	0.623	0.572	0.439	1.6e-08
TAIR|locus:2087700	132	AT3G12830 "AT3G12830" [Arabido	0.831	0.636	0.359	2.6e-08
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.613	0.418	0.462	3.3e-08
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.762	0.407	0.35	3.3e-08
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.742	0.490	0.387	8.7e-08
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.623	0.409	0.441	1.1e-07

TAIR|locus:2030809 AT1G43040 "AT1G43040" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 54/95 (56%), Positives = 69/95 (72%)

Query:     4 IVRKQWCCGAKSFPSDSEA-EEGHVRVFVG--KDMQFKFEMEANYLN--LFENLLKLSEE 58
             +V+K  CCGAKSF   +   +EG VRV+VG  +D Q K EM+A++L   LFE+LL+LSEE
Sbjct:     1 MVKKLLCCGAKSFSQRARLPDEGRVRVYVGNDRDTQCKLEMDADFLTHPLFEDLLRLSEE 60

Query:    59 EFGFSYDGALRIACEIDVFQYLLLLLKTGNPSAHY 93
             EFG SYDGALRIACEI VF  L+  LK+ + + HY
Sbjct:    61 EFGHSYDGALRIACEIQVFLNLIHYLKSTSHAPHY 95

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2162356 AT5G42410 "AT5G42410" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 56/95 (58%), Positives = 67/95 (70%)

Query:     1 MRGIVRKQWCCGAKSFPSDSEA---EEGHVRVFVGKDM--QFKFEMEANYLN--LFENLL 53
             MR +V+K   CGAK+  S   +   EEG VRV+VGKD   Q K E+EAN LN  + E+LL
Sbjct:     1 MRTLVKKLLWCGAKNISSSRTSALPEEGRVRVYVGKDKESQCKLEVEANLLNHPMLEDLL 60

Query:    54 KLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTGN 88
             +LSEEEFG SY+GALRIACEIDVF  L+ L KT N
Sbjct:    61 RLSEEEFGHSYEGALRIACEIDVFIKLVNLHKTTN 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query:    11 CGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGAL 68
             C +   P D    +G++ V+VG +++ +F +  +YL+  LF+ LL+ +EEEFGF   GAL
Sbjct:    70 CQSPEPPHD--VPKGNLAVYVGPELR-RFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGAL 126

Query:    69 RIACEIDVFQYLLLLLKTGNPSAH 92
              I CE++ F+YLL  ++      H
Sbjct:   127 TIPCEVETFKYLLKCMENNLKDLH 150

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/73 (39%), Positives = 49/73 (67%)

Query:    11 CGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGAL 68
             C +   P D    +G++ V+VG +++ +F +  N+L+  LF+ LL+ +EEE+GF + GAL
Sbjct:    70 CQSPEPPPD--VPKGYLAVYVGPELR-RFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGAL 126

Query:    69 RIACEIDVFQYLL 81
              I CE++ F+YLL
Sbjct:   127 TIPCEVETFKYLL 139

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2011801 AT1G56150 "AT1G56150" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/66 (43%), Positives = 42/66 (63%)

Query:    24 EGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIACEIDVFQYLL 81
             EGHV V+VG +M+ +F + A  LN  +F  LLK S +E+G+   G LRI C + VF+ +L
Sbjct:    40 EGHVPVYVGHEME-RFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERIL 98

Query:    82 LLLKTG 87
               L+ G
Sbjct:    99 ESLRLG 104

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2087700 AT3G12830 "AT3G12830" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query:    14 KSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIA 71
             +S    S   EGHV V+VG +M+ +F + A  LN  +F  LL  S +E+G+   G L+I 
Sbjct:    42 RSKKQTSSVPEGHVPVYVGDEME-RFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIP 100

Query:    72 CEIDVFQYLLLLLKTGNPSAHYMQLPDLI 100
             C + VF+ ++  L+ G P    + + DLI
Sbjct:   101 CHVLVFERIMESLRLGLPVP--IDVQDLI 127

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/67 (46%), Positives = 41/67 (61%)

Query:    14 KSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIA 71
             +S PSD     GHV V+VG+  + +F + A YLN  +  NLL  +EEEFGF+  G L I 
Sbjct:    35 RSVPSD--VPSGHVAVYVGRSCR-RFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIP 91

Query:    72 CEIDVFQ 78
             CE  VF+
Sbjct:    92 CEESVFE 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query:    15 SFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIAC 72
             SF   +   +G++ V VGK+ + ++++   YL+   F  LL+ +EEEFGF   G LRI C
Sbjct:    73 SFTDTTAIPKGYLAVSVGKEEK-RYKIPTEYLSHQAFHVLLREAEEEFGFEQAGILRIPC 131

Query:    73 EIDVFQYLLLLLKTGNPSAH 92
             E+ VF+ +L +++     A+
Sbjct:   132 EVAVFESILKIMEDNKSDAY 151

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 31/80 (38%), Positives = 44/80 (55%)

Query:    13 AKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRI 70
             ++  PSD     GHV V VG   + +F + A+YLN  +  NLL  +EEEFGF+  G L I
Sbjct:    34 SRCVPSD--VPSGHVAVCVGSGCR-RFVVRASYLNHPIISNLLVQAEEEFGFANQGPLVI 90

Query:    71 ACEIDVFQYLLLLLKTGNPS 90
              CE  VF+  +  +   + S
Sbjct:    91 PCEESVFEEAIRFISRSDSS 110

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query:    13 AKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRI 70
             ++  PSD     GHV V+VG   + +F + A YLN  +  NLL  +EEEFGF   G L I
Sbjct:    35 SRCVPSD--VPSGHVAVYVGSSCR-RFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVI 91

Query:    71 ACEIDVFQ 78
              CE  VF+
Sbjct:    92 PCEESVFE 99

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR17 SAUR family protein (100 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-20
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	6e-07
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	7e-07
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-05

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 78.5 bits (194), Expect = 1e-20
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 12 GAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALR 69
          G+ S  S ++  +GH  V+VG++ + +F +  +YLN  LF+ LL  +EEEFGF  DG L 
Sbjct: 25 GSSSKSSSADVPKGHFAVYVGEETR-RFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLT 83

Query: 70 IACEIDVFQYLLLLLK 85
          I C++ VF++LL +L+
Sbjct: 84 IPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 43.6 bits (103), Expect = 6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 6   RKQWCCGAKSFPSDSEAEEGHVRVFVGKDMQFKFEMEANYLNL--FENLLKLSEEEFGFS 63
            K+        P D    +GH  V+VG++ + ++ +  ++L    F++LL+ +EEEFGF 
Sbjct: 26  GKKQGYDEDGLPLD--VPKGHFPVYVGEN-RSRYIVPISFLTHPEFQSLLQQAEEEFGFD 82

Query: 64  YDGALRIACEIDVFQYLLLLLK 85
           +D  L I CE  VF+ L  +++
Sbjct: 83  HDMGLTIPCEEVVFRSLTSMIR 104

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 43.6 bits (102), Expect = 7e-07
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 24  EGHVRVFVGKDMQFK-FEMEANYLN--LFENLLKLSEEEFGFSYD-GALRIACEIDVFQY 79
           +GHV V+VG+ M+ K F +  +YLN  LF   L  +EEE GF +  G L I C  + F +
Sbjct: 41  KGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLH 100

Query: 80  LL 81
           L+
Sbjct: 101 LI 102

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 15  SFPSDSEAEEGHVRVFVGKDMQF---KFEMEANYLN--LFENLLKLSEEEFGFSYD-GAL 68
           S  S     +GHV V+VG+ ++    +F +  ++LN   F+  L  +EEEFGF++  G L
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 69  RIACEIDVFQYLL 81
            I C  +VF  L+
Sbjct: 88  TIPCREEVFLDLI 100

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	99.98
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	91.35
PRK02899	197	adaptor protein; Provisional	86.1
PRK02315	233	adaptor protein; Provisional	82.49

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=195.48  Aligned_cols=82  Identities=32%  Similarity=0.538  Sum_probs=71.0

Q ss_pred             hhhhHHHHhhcCCCC----CCCcCCCCceEEEEeecCCceeEEEEcchHH--HHHHHHHhhHHhcCcccCCceEEecCHH
Q 045793            2 RGIVRKQWCCGAKSF----PSDSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIACEID   75 (101)
Q Consensus         2 ~~~~r~~~~~~~~~~----~~~~~vpkG~~aVyVG~~~~kRfvVp~~~Ln--~F~~LL~~aeeEfG~~~~G~L~IPC~~~   75 (101)
                      ++++|+....++++.    ..+.+|||||||||||+ +++||+||++|||  +|++||++|||||||+|+|+|+|||+++
T Consensus        16 kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~   94 (104)
T PLN03090         16 KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEV   94 (104)
T ss_pred             HHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHH
Confidence            455555444444432    24678999999999999 8999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 045793           76 VFQYLLLLL   84 (101)
Q Consensus        76 ~Fe~vl~~l   84 (101)
                      .|++++|+|
T Consensus        95 ~Fe~ll~~i  103 (104)
T PLN03090         95 VFRSLTSMI  103 (104)
T ss_pred             HHHHHHHHh
Confidence            999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=99.98  E-value=1.5e-32  Score=188.83  Aligned_cols=66  Identities=45%  Similarity=0.875  Sum_probs=63.8

Q ss_pred             CcCCCCceEEEEeecCCceeEEEEcchHH--HHHHHHHhhHHhcCcccCCceEEecCHHHHHHHHHHHh
Q 045793           19 DSEAEEGHVRVFVGKDMQFKFEMEANYLN--LFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLK   85 (101)
Q Consensus        19 ~~~vpkG~~aVyVG~~~~kRfvVp~~~Ln--~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l~   85 (101)
                      ..++|+||+|||||+ +++||+||++|||  +|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            378999999999998 8999999999999  99999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=7.5e-32  Score=187.66  Aligned_cols=82  Identities=33%  Similarity=0.566  Sum_probs=68.2

Q ss_pred             hhhhHHHHhhcCC--CCCCCcCCCCceEEEEeecC---CceeEEEEcchHH--HHHHHHHhhHHhcCccc-CCceEEecC
Q 045793            2 RGIVRKQWCCGAK--SFPSDSEAEEGHVRVFVGKD---MQFKFEMEANYLN--LFENLLKLSEEEFGFSY-DGALRIACE   73 (101)
Q Consensus         2 ~~~~r~~~~~~~~--~~~~~~~vpkG~~aVyVG~~---~~kRfvVp~~~Ln--~F~~LL~~aeeEfG~~~-~G~L~IPC~   73 (101)
                      .+|+|+.......  +.+.+.+|||||||||||++   +++||+||++|||  +|++||++|||||||+| +|+|+|||+
T Consensus        13 k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd   92 (105)
T PLN03220         13 KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCR   92 (105)
T ss_pred             HHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCC
Confidence            3566666522222  23356799999999999973   5899999999999  99999999999999998 599999999


Q ss_pred             HHHHHHHHHH
Q 045793           74 IDVFQYLLLL   83 (101)
Q Consensus        74 ~~~Fe~vl~~   83 (101)
                      ++.|++++..
T Consensus        93 ~~~F~~ll~s  102 (105)
T PLN03220         93 EEVFLDLIAS  102 (105)
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.6e-31  Score=186.76  Aligned_cols=81  Identities=32%  Similarity=0.524  Sum_probs=69.7

Q ss_pred             hhhHHHHhhcCCCCC-------CCcCCCCceEEEEeecC-CceeEEEEcchHH--HHHHHHHhhHHhcCccc-CCceEEe
Q 045793            3 GIVRKQWCCGAKSFP-------SDSEAEEGHVRVFVGKD-MQFKFEMEANYLN--LFENLLKLSEEEFGFSY-DGALRIA   71 (101)
Q Consensus         3 ~~~r~~~~~~~~~~~-------~~~~vpkG~~aVyVG~~-~~kRfvVp~~~Ln--~F~~LL~~aeeEfG~~~-~G~L~IP   71 (101)
                      +||+-.++..+.+.+       .+.+|||||+|||||++ +++||+||++|||  +|++||++|||||||+| +|+|+||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IP   92 (108)
T PLN03219         13 QIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIP   92 (108)
T ss_pred             HHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEe
Confidence            566666666655533       24679999999999973 6999999999999  99999999999999998 5999999


Q ss_pred             cCHHHHHHHHHH
Q 045793           72 CEIDVFQYLLLL   83 (101)
Q Consensus        72 C~~~~Fe~vl~~   83 (101)
                      |+++.|+++++.
T Consensus        93 Cd~~~F~~ll~~  104 (108)
T PLN03219         93 CREESFLHLITS  104 (108)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=91.35  E-value=0.61  Score=30.11  Aligned_cols=56  Identities=29%  Similarity=0.376  Sum_probs=43.4

Q ss_pred             EEeecCCceeEEEEcchHH-----HHHHHHHhhHHhcCcccCCceEEecCHHHHHHHHHHHhcC
Q 045793           29 VFVGKDMQFKFEMEANYLN-----LFENLLKLSEEEFGFSYDGALRIACEIDVFQYLLLLLKTG   87 (101)
Q Consensus        29 VyVG~~~~kRfvVp~~~Ln-----~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~l~~~   87 (101)
                      +=||.   ++|.++.+.|.     .|..+++.......-+.+|.+-|-++...|++|+.-++.+
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            44775   99999999998     7888888652222223469999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=86.10  E-value=0.69  Score=35.02  Aligned_cols=23  Identities=30%  Similarity=0.800  Sum_probs=21.6

Q ss_pred             HHHHHHHhhHHhcCcccCCceEE
Q 045793           48 LFENLLKLSEEEFGFSYDGALRI   70 (101)
Q Consensus        48 ~F~~LL~~aeeEfG~~~~G~L~I   70 (101)
                      +|.++|++|..|+||..+|||+|
T Consensus        40 lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         40 LFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHhhhccCcccCCeEEE
Confidence            99999999999999998899876

>PRK02315 adaptor protein; Provisional

Probab=82.49  E-value=1  Score=34.74  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             HHHHHHHhhHHhcCcccCCceEE
Q 045793           48 LFENLLKLSEEEFGFSYDGALRI   70 (101)
Q Consensus        48 ~F~~LL~~aeeEfG~~~~G~L~I   70 (101)
                      +|.++|++|..|+||..+|||+|
T Consensus        40 fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         40 FFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHhccccCcccCCeEEE
Confidence            99999999999999998999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	85.96
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	81.68
2vpk_A	116	Myoneurin; transcription regulation, transcription	81.18

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=85.96  E-value=4.3  Score=26.29  Aligned_cols=60  Identities=23%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             ceEEEEeecCCceeEEEEcchHH-----HHHHHHHhhHHhcC--cccCCceEEecCHHHHHHHHHHHhcCC
Q 045793           25 GHVRVFVGKDMQFKFEMEANYLN-----LFENLLKLSEEEFG--FSYDGALRIACEIDVFQYLLLLLKTGN   88 (101)
Q Consensus        25 G~~aVyVG~~~~kRfvVp~~~Ln-----~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~l~~~~   88 (101)
                      ..+.+-||.   ++|.+..+-|.     .|..|.... .++.  .+.+|.+-|..+...|++|+.-++.+.
T Consensus         6 ~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~   72 (107)
T 3drz_A            6 KWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK   72 (107)
T ss_dssp             CEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred             CEEEEEECC---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence            467788996   99999999998     677775432 1232  235699999999999999999999764

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=81.68  E-value=6.7  Score=24.15  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=42.3

Q ss_pred             EEEEeecC-CceeEEEEcchHH----HHHHHHHhhHHhcCcccCCceEEe-cCHHHHHHHHHHHhcCCCC
Q 045793           27 VRVFVGKD-MQFKFEMEANYLN----LFENLLKLSEEEFGFSYDGALRIA-CEIDVFQYLLLLLKTGNPS   90 (101)
Q Consensus        27 ~aVyVG~~-~~kRfvVp~~~Ln----~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~~~   90 (101)
                      +.+.||++ +.++|-++-..|.    .|+.++...-.|-   . ..+.|| .+.+.|+.++.-+=.+.-.
T Consensus        11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~~   76 (109)
T 2vkp_A           11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEID   76 (109)
T ss_dssp             EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCcc
Confidence            34566641 3589999999997    9999997643332   2 678897 6999999999988776543

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=81.18  E-value=5.6  Score=25.03  Aligned_cols=62  Identities=21%  Similarity=0.406  Sum_probs=45.4

Q ss_pred             EEEEeecCCceeEEEEcchHH----HHHHHHHhhHHhcCcccCCceEEe---cCHHHHHHHHHHHhcCCCCCCCCCccc
Q 045793           27 VRVFVGKDMQFKFEMEANYLN----LFENLLKLSEEEFGFSYDGALRIA---CEIDVFQYLLLLLKTGNPSAHYMQLPD   98 (101)
Q Consensus        27 ~aVyVG~~~~kRfvVp~~~Ln----~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~~l~~~~~~~~~~~l~~   98 (101)
                      +.+.||.   ++|-+.-..|.    .|+.++...       .+..+.|+   .+...|+.++.-+=.+.-.....++.+
T Consensus        25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~   93 (116)
T 2vpk_A           25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKE   93 (116)
T ss_dssp             EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHH
T ss_pred             EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHH
Confidence            3456664   78999999997    999999765       35678888   799999999998877654433333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	82.65

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.65  E-value=0.17  Score=31.92  Aligned_cols=59  Identities=22%  Similarity=0.319  Sum_probs=43.2

Q ss_pred             EEEEeecCCceeEEEEcchHH-HHHHHHHhhHHhcCc-ccCCceEEecCHHHHHHHHHHHhcCC
Q 045793           27 VRVFVGKDMQFKFEMEANYLN-LFENLLKLSEEEFGF-SYDGALRIACEIDVFQYLLLLLKTGN   88 (101)
Q Consensus        27 ~aVyVG~~~~kRfvVp~~~Ln-~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~~l~~~~   88 (101)
                      +.+-||.   ++|.+..+.|. .-..+|.+.....-+ +.+|.+-|--|...|++|+..++.+.
T Consensus         2 I~LNVGG---~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~   62 (105)
T d1nn7a_           2 IVLNVSG---TRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK   62 (105)
T ss_dssp             EEEEETT---EEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred             EEEEECC---EEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence            4567886   99999999998 222233333333333 44599999999999999999999875