Citrus Sinensis ID: 045802

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MNDLISNSFKRYSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLIVNSPQ
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccHHHHHHccccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mndlisnsfkrysnvdleaggvirkgtenlDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKsnaanrkvpgcgpgssvdrtrTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLIstlivnspq
mndlisnsfkrysnvdleaggvirkgtenldkFFDDVENVKEDMKVVEKLYKRlqesneetkvahnaktmkqIRARMDSDVEQVLKRVKVIKGKlealeksnaanrkvpgcgpgssvdrtrtsVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFakesqkdsrKWTCIAILLGIVLIIVFLFPLISTLIVNSPQ
MNDLISNSFKRYSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAillgivliivflfpliSTLIVNSPQ
***********YSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLY********************************VLKRVKVIK*********************************************DFQHLRAKMTAEYKETIERRYFTVTG*******************************************HDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRR***************RKWTCIAILLGIVLIIVFLFPLISTLIV****
MNDLI***************************FFDDVENVKEDMKVVEKLYKRLQ*************************VEQVLKRVKVIKGKL***************************SVVAGLGKKLKDTMDDFQH************************************************************EIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLIVNS**
MNDLISNSFKRYSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQL**********RKWTCIAILLGIVLIIVFLFPLISTLIVNSPQ
******N*FKRYSN************TENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRK*****PGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLIVNSP*
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MNDLISNSFKRYSNVDLEAGGVIRKGTENLDKFFDDxxxxxxxxxxxxxxxxxxxxxNEETKVAHNAKTMKQIRARMDSDxxxxxxxxxxxxxxxxxxxxxNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLIVNSPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
O64791303 Syntaxin-124 OS=Arabidops yes no 0.973 0.966 0.720 1e-124
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.903 0.912 0.755 1e-118
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.980 0.967 0.687 1e-111
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.827 0.719 0.634 2e-91
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.913 0.806 0.551 4e-82
Q9SRV7306 Putative syntaxin-131 OS= no no 0.910 0.895 0.491 2e-69
Q42374310 Syntaxin-related protein no no 0.897 0.870 0.441 4e-64
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.900 0.891 0.487 5e-62
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.953 0.940 0.366 3e-51
O16000291 Syntaxin-1A homolog OS=Ca yes no 0.823 0.852 0.240 5e-17
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function desciption
 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/304 (72%), Positives = 256/304 (84%), Gaps = 11/304 (3%)

Query: 1   MNDLISNSFKRYSNV-------DLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKR 53
           MNDL S+SFK+Y+++       D+E+G    K T NLDKFF+DVENVK++MK VE LYK 
Sbjct: 1   MNDLFSSSFKKYTDLKQQAQMDDIESG----KETMNLDKFFEDVENVKDNMKGVETLYKS 56

Query: 54  LQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGP 113
           LQ+SNEE K  HNAK +K++RA+MD DV QVLKRVK+IK KLEALEK+NA +R V GCGP
Sbjct: 57  LQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGP 116

Query: 114 GSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIEN 173
           GSS DRTRTSVV+GLGKKLKD MD FQ LRA+M AEYKET+ERRYFT+TG+QADEQ IEN
Sbjct: 117 GSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIEN 176

Query: 174 LISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEA 233
           LISSGESENFLQKAIQEQGRGQI+DTISEIQERHDAVKEIEKNL+ELHQVFLDM ALVE+
Sbjct: 177 LISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVES 236

Query: 234 QGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLIS 293
           QG QLNDIESHV+ A+SFVRRGT+QL+ A+E QK SRKWTC AILL IV+  + L P + 
Sbjct: 237 QGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAILLFIVVFALLLIPALP 296

Query: 294 TLIV 297
            +++
Sbjct: 297 HIML 300
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
357446333304 Syntaxin-124 [Medicago truncatula] gi|35 0.970 0.960 0.765 1e-133
224076808296 predicted protein [Populus trichocarpa] 0.956 0.972 0.759 1e-131
224116216302 predicted protein [Populus trichocarpa] 0.973 0.970 0.733 1e-130
356555050304 PREDICTED: syntaxin-124-like [Glycine ma 0.936 0.927 0.778 1e-130
255560844302 syntaxin, putative [Ricinus communis] gi 0.933 0.930 0.770 1e-128
359496726304 PREDICTED: syntaxin-124-like [Vitis vini 0.930 0.921 0.766 1e-127
302144240310 unnamed protein product [Vitis vinifera] 0.930 0.903 0.766 1e-127
225447260305 PREDICTED: syntaxin-124 [Vitis vinifera] 0.980 0.967 0.733 1e-127
297840423303 SYP124 [Arabidopsis lyrata subsp. lyrata 0.973 0.966 0.733 1e-125
449457795303 PREDICTED: syntaxin-124-like [Cucumis sa 0.916 0.910 0.784 1e-125
>gi|357446333|ref|XP_003593444.1| Syntaxin-124 [Medicago truncatula] gi|355482492|gb|AES63695.1| Syntaxin-124 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/303 (76%), Positives = 267/303 (88%), Gaps = 11/303 (3%)

Query: 1   MNDLISNSFKRYSNV-------DLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKR 53
           MNDL S+SFK+YS++       D+EAG    K + NLDKFF+DVENVKEDM++VEKLY++
Sbjct: 1   MNDLFSSSFKKYSDLKEQAQIDDVEAG----KESINLDKFFEDVENVKEDMRLVEKLYRK 56

Query: 54  LQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGP 113
           LQE+NEE+K+ HNAKTMK +RARMD DVEQVLKRVK+IKGKLEALE+SNAANR +PGCGP
Sbjct: 57  LQEANEESKIVHNAKTMKDLRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGP 116

Query: 114 GSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIEN 173
           GSS DRTRTSVV+GLGKKLKD MDDFQ LRA+M  EYKETIERRYFT+TG++ADE  IEN
Sbjct: 117 GSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIEN 176

Query: 174 LISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEA 233
           LISSGESE F+Q+AIQEQGRGQIMDTISEIQERHDAVKEIEKNL+ELHQVFLDM ALVE+
Sbjct: 177 LISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVES 236

Query: 234 QGHQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLIS 293
           QG QLN+IESHVAHA+SFVRRGTEQL  A+E QKDSRKWTC  ILL IVL+IV LFPL+ 
Sbjct: 237 QGQQLNNIESHVAHASSFVRRGTEQLHEAREHQKDSRKWTCYVILLAIVLVIVLLFPLLM 296

Query: 294 TLI 296
           +++
Sbjct: 297 SIL 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224076808|ref|XP_002305002.1| predicted protein [Populus trichocarpa] gi|222847966|gb|EEE85513.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116216|ref|XP_002317241.1| predicted protein [Populus trichocarpa] gi|222860306|gb|EEE97853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555050|ref|XP_003545852.1| PREDICTED: syntaxin-124-like [Glycine max] Back     alignment and taxonomy information
>gi|255560844|ref|XP_002521435.1| syntaxin, putative [Ricinus communis] gi|223539334|gb|EEF40925.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359496726|ref|XP_003635313.1| PREDICTED: syntaxin-124-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144240|emb|CBI23478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447260|ref|XP_002272992.1| PREDICTED: syntaxin-124 [Vitis vinifera] gi|297739275|emb|CBI28926.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297840423|ref|XP_002888093.1| SYP124 [Arabidopsis lyrata subsp. lyrata] gi|297333934|gb|EFH64352.1| SYP124 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449457795|ref|XP_004146633.1| PREDICTED: syntaxin-124-like [Cucumis sativus] gi|449488500|ref|XP_004158058.1| PREDICTED: syntaxin-124-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.916 0.910 0.756 5.7e-107
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.903 0.912 0.755 4e-106
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.913 0.901 0.699 9.1e-100
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.916 0.797 0.589 8.9e-86
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.913 0.806 0.555 3.5e-75
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.916 0.901 0.494 5.1e-67
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.900 0.874 0.443 7.1e-61
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.880 0.868 0.384 2.6e-47
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.790 0.712 0.289 4.8e-23
WB|WBGene00006798291 unc-64 [Caenorhabditis elegans 0.784 0.810 0.266 9e-22
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 211/279 (75%), Positives = 241/279 (86%)

Query:     1 MNDLISNSFKRYSNVDLEAG-GVIRKGTE--NLDKFFDDVENVKEDMKVVEKLYKRLQES 57
             MNDL S+SFK+Y+++  +A    I  G E  NLDKFF+DVENVK++MK VE LYK LQ+S
Sbjct:     1 MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDS 60

Query:    58 NEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSV 117
             NEE K  HNAK +K++RA+MD DV QVLKRVK+IK KLEALEK+NA +R V GCGPGSS 
Sbjct:    61 NEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSST 120

Query:   118 DRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISS 177
             DRTRTSVV+GLGKKLKD MD FQ LRA+M AEYKET+ERRYFT+TG+QADEQ IENLISS
Sbjct:   121 DRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISS 180

Query:   178 GESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQ 237
             GESENFLQKAIQEQGRGQI+DTISEIQERHDAVKEIEKNL+ELHQVFLDM ALVE+QG Q
Sbjct:   181 GESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQ 240

Query:   238 LNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIA 276
             LNDIESHV+ A+SFVRRGT+QL+ A+E QK SRKWTC A
Sbjct:   241 LNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYA 279
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009860 "pollen tube growth" evidence=IDA
GO:0030133 "transport vesicle" evidence=IDA
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00006798 unc-64 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SXB0SY125_ARATHNo assigned EC number0.75530.90360.9127nono
O64791SY124_ARATHNo assigned EC number0.72030.97340.9669yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IV.2249.1
hypothetical protein (296 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 2e-39
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 2e-20
pfam00804103 pfam00804, Syntaxin, Syntaxin 2e-12
pfam0573962 pfam05739, SNARE, SNARE domain 1e-11
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 8e-11
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-09
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 3e-09
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 4e-09
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  135 bits (341), Expect = 2e-39
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 7/158 (4%)

Query: 30  LDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVK 89
           L++FF++VE ++ ++  + +  + LQ+ + +   A +A    +++  ++S V+++ K  K
Sbjct: 1   LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDA--DPELKQELESLVQEIKKLAK 58

Query: 90  VIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAE 149
            IKGKL+ LE+SN  N  + G    SSVDR R +  +GL KK  + M +F   + K    
Sbjct: 59  EIKGKLKELEESNEQNEALNG----SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRER 114

Query: 150 YKETIERRYFTVTGQQADEQMIENLISSGESENFLQKA 187
           YKE I+R+     G+  DE++ + L  SG SE F  + 
Sbjct: 115 YKERIQRQLEITGGEATDEELEDMLE-SGNSEIFTSQI 151

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.91
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.88
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.73
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.61
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.49
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.46
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.31
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.18
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.07
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.56
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.1
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.82
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.53
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.52
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.84
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.77
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.48
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.19
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 95.39
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 95.17
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 93.04
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 91.48
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 91.34
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 89.16
PF14992280 TMCO5: TMCO5 family 85.66
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 83.79
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 83.78
PHA0284475 putative transmembrane protein; Provisional 83.36
PHA0265081 hypothetical protein; Provisional 80.38
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-54  Score=396.36  Aligned_cols=289  Identities=39%  Similarity=0.637  Sum_probs=256.3

Q ss_pred             CCcchhhhhhccccccccCCc-----cccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHH
Q 045802            1 MNDLISNSFKRYSNVDLEAGG-----VIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRA   75 (301)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~   75 (301)
                      |||+++.+|.++.+-|.+.+.     ....++..|+.||.+|++|+..|..+...+++|..+|.+.  +.++...+.++.
T Consensus         1 M~d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l~~~~~~~~~k~   78 (297)
T KOG0810|consen    1 MNDRLSELLARSVSEDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--LHSPNADKELKR   78 (297)
T ss_pred             CccccHHHHcCchhhcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--hccccccHHHHH
Confidence            999999999999877666651     1223458899999999999999999999999999999655  455556788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802           76 RMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIE  155 (301)
Q Consensus        76 ~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~  155 (301)
                      +|+.++.++.+.++.|+.+|+.+++.+......+   +.++..|+|++++..++++|.++|.+|+.+|..|+.+|+++++
T Consensus        79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~  155 (297)
T KOG0810|consen   79 KLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ  155 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988754333   3345679999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCHHHHHHHhhCCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802          156 RRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQG  235 (301)
Q Consensus       156 r~~~~i~~~~~s~eeie~~~e~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qg  235 (301)
                      |||.++.+..+++++++.++++|+++.|++.++.  ++++++.+|.++++||.+|++||++|.|||+||.|||.||+.||
T Consensus       156 Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~Qg  233 (297)
T KOG0810|consen  156 RQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQG  233 (297)
T ss_pred             HHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888655548999999999999999999999887  44667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045802          236 HQLNDIESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCIAILLGIVLIIVFLFPLISTLI  296 (301)
Q Consensus       236 e~id~Ie~nv~~a~~~v~~~~~~l~kA~~~~~~~rk~~~~~i~~~iiiilii~~~i~~~~~  296 (301)
                      +|||+||+||.+|.+||++|..++++|.+||+++|||.||+|++++|+++|+++++++.|.
T Consensus       234 Emvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~  294 (297)
T KOG0810|consen  234 EMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLV  294 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccccc
Confidence            9999999999999999999999999999999999999999988888887777775554443

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF14992 TMCO5: TMCO5 family Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02844 putative transmembrane protein; Provisional Back     alignment and domain information
>PHA02650 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-14
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-13
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 2e-08
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 4e-08
1jth_B77 Crystal Structure And Biophysical Properties Of A C 5e-08
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 6e-08
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 2e-07
3rk2_B65 Truncated Snare Complex Length = 65 3e-07
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 3e-07
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 3e-07
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 2e-05
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 2e-05
1fio_A196 Crystal Structure Of Yeast T-Snare Protein Sso1 Len 7e-04
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 131/244 (53%), Gaps = 16/244 (6%)
Query: 33  FFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIK 92
           FF+ V+ ++++++ +E+  +++ + + E+ VA      K+ R R++  ++  + R+  + 
Sbjct: 46  FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVA----VSKEDRDRLNEKLQDTMARISALG 101
Query: 93  GKLEA----LEKSNAANRKVPGCGPGS-SVD-RTRTSVVAGLGKKLKDTMDDFQHLRAKM 146
            K+ A    +EK N   ++      G+ S D R R S  + L +K    M  +  ++A+ 
Sbjct: 102 NKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAEN 161
Query: 147 TAEYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQER 206
              Y E + R+   V    +D+  I+ +I  G +E        E    ++    +EI++R
Sbjct: 162 KRRYGENVARQCRVVEPSLSDD-AIQKVIEHG-TEGIFSGMRLEGAEAKL----NEIRDR 215
Query: 207 HDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQLEFAKESQ 266
           H  ++++E++LLELH++F DM  LV +QG  ++ IE  V  ++++V++ TEQ+  A+  Q
Sbjct: 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQ 275
Query: 267 KDSR 270
           + +R
Sbjct: 276 ESAR 279
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1 Length = 196 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 8e-47
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 4e-45
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 1e-41
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 9e-28
1s94_A180 S-syntaxin; three helix bundle, structural plastic 6e-24
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 7e-24
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-20
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-20
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-19
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 1e-18
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 5e-17
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  157 bits (398), Expect = 8e-47
 Identities = 58/275 (21%), Positives = 127/275 (46%), Gaps = 8/275 (2%)

Query: 1   MNDLISNSFKRYSNVDLEAGGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEE 60
           M D          + D +   V       +D+FF+ VE ++  +  + +  + ++  +  
Sbjct: 1   MKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHS- 59

Query: 61  TKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKVPGCGPGSSVDRT 120
             +  +    ++ +  ++  +  + K    ++ KL+++E+S     +  G    S+  R 
Sbjct: 60  -AILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI---EQEEGLNRSSADLRI 115

Query: 121 RTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGES 180
           R +  + L +K  + M ++   ++      K  I+R+   +TG+    + +E+++ SG  
Sbjct: 116 RKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNP 174

Query: 181 ENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLND 240
             F    I +    +    +SEI+ RH  + ++E ++ ELH +F+DM  LVE+QG  ++ 
Sbjct: 175 AIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDR 232

Query: 241 IESHVAHANSFVRRGTEQLEFAKESQKDSRKWTCI 275
           IE +V HA  +V R     + A + Q  +R+   +
Sbjct: 233 IEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.95
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.92
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.91
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.88
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.87
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.87
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.85
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.81
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.81
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.79
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.87
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.33
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.25
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.2
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.17
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.09
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.97
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.83
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.45
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.21
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.3
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.21
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.06
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.25
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 89.61
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 82.71
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 80.66
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=7.4e-46  Score=337.22  Aligned_cols=248  Identities=23%  Similarity=0.393  Sum_probs=196.4

Q ss_pred             CccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045802           20 GGVIRKGTENLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALE   99 (301)
Q Consensus        20 ~~~~~e~~~~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~   99 (301)
                      ...+++++++|+.||+.|++|+..|..|..++++|+++|.+.++.+++  ++.++.+|+.++.+|+++++.|+.+|+.|+
T Consensus        20 ~~~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~   97 (267)
T 1dn1_B           20 VTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIE   97 (267)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999987654443  346789999999999999999999999998


Q ss_pred             HhhHhccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCC
Q 045802          100 KSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGE  179 (301)
Q Consensus       100 ~~~~~~k~~~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~  179 (301)
                      ..+...   +++.+++++.|+|++|+.+|+++|+++|..|+.+|..|+.+++.++.|+|. |.||+++++++++++++|+
T Consensus        98 ~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~-i~~~~~tdeeie~~ie~g~  173 (267)
T 1dn1_B           98 QSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLE-ITGRTTTSEELEDMLESGN  173 (267)
T ss_dssp             HHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHTCS
T ss_pred             HHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-ccCCCCCHHHHHHHHhCCc
Confidence            875431   122344567899999999999999999999999999999999999988665 6789999999999999998


Q ss_pred             chhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045802          180 SENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQGHQLNDIESHVAHANSFVRRGTEQL  259 (301)
Q Consensus       180 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~l  259 (301)
                      ++.|.+..+.++  ++++.++.++++||++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||+.|..+|
T Consensus       174 ~~~f~q~~l~~~--~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l  251 (267)
T 1dn1_B          174 PAIFASGIIMDS--SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT  251 (267)
T ss_dssp             SCTTTTTCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---
T ss_pred             HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877765433332  356788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccchhhHHHH
Q 045802          260 EFAKESQKDSRKWTCI  275 (301)
Q Consensus       260 ~kA~~~~~~~rk~~~~  275 (301)
                      .+|.+|++++|||.||
T Consensus       252 ~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          252 KKAVKYQSKARRKKIM  267 (267)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHhcCcccC
Confidence            9999999999999886
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 301
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 7e-29
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 2e-20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 7e-29
 Identities = 35/206 (16%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 29  NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRV 88
           +   F + +  +  D+   +    ++   ++      N +    +R  +D+ V Q     
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62

Query: 89  KVIKGKLEALEKSNAANRKVPGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTA 148
             +K ++++ ++                 D  + +      ++    + D++ + +    
Sbjct: 63  FKLKNEIKSAQRD-------------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKE 109

Query: 149 EYKETIERRYFTVTGQQADEQMIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHD 208
           E KE  +R+Y  +  +  ++++   +   G  + F Q  +    RG+    ++E+Q RH 
Sbjct: 110 ENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQ 169

Query: 209 AVKEIEKNLLELHQVFLDMFALVEAQ 234
            + ++EK++ EL Q+F DM  LV  Q
Sbjct: 170 ELLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.93
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.79
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 90.33
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.6e-25  Score=186.54  Aligned_cols=193  Identities=20%  Similarity=0.350  Sum_probs=160.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Q 045802           29 NLDKFFDDVENVKEDMKVVEKLYKRLQESNEETKVAHNAKTMKQIRARMDSDVEQVLKRVKVIKGKLEALEKSNAANRKV  108 (301)
Q Consensus        29 ~~~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~L~~l~~~~~~~k~~  108 (301)
                      .+..||+.|++|+..|..|+.++..|..++.+.+..+++.+...++..++.++.+++.+++.++..++.+...       
T Consensus         3 d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~-------   75 (196)
T d1fioa_           3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD-------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence            4789999999999999999999999999999887777777788889999999999999999999888888653       


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCHHHHHHHhhCCCch-hHHHHH
Q 045802          109 PGCGPGSSVDRTRTSVVAGLGKKLKDTMDDFQHLRAKMTAEYKETIERRYFTVTGQQADEQMIENLISSGESE-NFLQKA  187 (301)
Q Consensus       109 ~~~~~~s~~~rir~~~~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~r~~~~i~~~~~s~eeie~~~e~g~~~-~~~q~~  187 (301)
                            .+..+++++++..|+.+|.+++..|+.+|..|..+++.++.|++. +.+|.+++++++.....++.. .+.+..
T Consensus        76 ------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (196)
T d1fioa_          76 ------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM-IIQPEATEDEVEAAISDVGGQQIFSQAL  148 (196)
T ss_dssp             ------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCccchhhhHhhccccchHHHHHHH
Confidence                  123588899999999999999999999999999999999987765 467888999988777554333 333333


Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045802          188 IQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMFALVEAQG  235 (301)
Q Consensus       188 l~~~~~~q~~~~l~~i~~R~~ei~~ie~~i~eL~~lf~dl~~lV~~Qg  235 (301)
                      +......++...+.++++|+++|.+||++|.||++||.|||+||.+|.
T Consensus       149 ~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            333333456678999999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure